Multiple sequence alignment - TraesCS5B01G521700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G521700 chr5B 100.000 3769 0 0 1 3769 683594970 683598738 0.000000e+00 6961.0
1 TraesCS5B01G521700 chr5B 88.406 414 33 9 3367 3767 224281887 224282298 5.660000e-133 484.0
2 TraesCS5B01G521700 chr5B 86.939 245 26 5 3101 3344 285918827 285918588 1.730000e-68 270.0
3 TraesCS5B01G521700 chr5B 83.871 93 13 2 2977 3068 259743231 259743140 1.860000e-13 87.9
4 TraesCS5B01G521700 chr5D 93.950 1157 42 9 761 1893 541875468 541876620 0.000000e+00 1724.0
5 TraesCS5B01G521700 chr5D 95.663 830 29 4 2097 2920 541876981 541877809 0.000000e+00 1327.0
6 TraesCS5B01G521700 chr5D 90.164 915 68 4 761 1655 541700794 541701706 0.000000e+00 1171.0
7 TraesCS5B01G521700 chr5D 84.527 1131 95 31 782 1862 540806993 540805893 0.000000e+00 1046.0
8 TraesCS5B01G521700 chr5D 88.994 845 66 11 1891 2735 540805105 540804288 0.000000e+00 1020.0
9 TraesCS5B01G521700 chr5D 83.670 1139 114 28 782 1862 541392987 541391863 0.000000e+00 1007.0
10 TraesCS5B01G521700 chr5D 91.547 698 54 5 1931 2626 541391662 541390968 0.000000e+00 957.0
11 TraesCS5B01G521700 chr5D 92.321 586 28 10 3196 3769 541879075 541879655 0.000000e+00 817.0
12 TraesCS5B01G521700 chr5D 87.896 537 57 3 2046 2577 541702240 541702773 3.200000e-175 625.0
13 TraesCS5B01G521700 chr5D 95.758 330 14 0 1 330 225791042 225791371 1.990000e-147 532.0
14 TraesCS5B01G521700 chr5D 91.772 158 12 1 2951 3107 541877793 541877950 6.340000e-53 219.0
15 TraesCS5B01G521700 chr5D 89.820 167 16 1 1696 1862 541701710 541701875 2.950000e-51 213.0
16 TraesCS5B01G521700 chr5D 91.667 120 4 4 591 704 541875364 541875483 1.080000e-35 161.0
17 TraesCS5B01G521700 chr5D 89.167 120 6 5 591 704 541700691 541700809 3.920000e-30 143.0
18 TraesCS5B01G521700 chr5D 90.000 90 7 2 495 583 541393245 541393157 8.550000e-22 115.0
19 TraesCS5B01G521700 chr5D 85.393 89 4 4 2648 2735 541379249 541379169 2.410000e-12 84.2
20 TraesCS5B01G521700 chr4A 95.680 787 29 4 1891 2672 627497608 627496822 0.000000e+00 1260.0
21 TraesCS5B01G521700 chr4A 86.417 854 92 18 1016 1862 627498899 627498063 0.000000e+00 913.0
22 TraesCS5B01G521700 chr4A 90.497 684 43 13 3101 3769 627475992 627475316 0.000000e+00 883.0
23 TraesCS5B01G521700 chr4A 94.071 253 12 2 2671 2920 627476410 627476158 7.640000e-102 381.0
24 TraesCS5B01G521700 chr4A 92.405 158 11 1 2951 3107 627476174 627476017 1.360000e-54 224.0
25 TraesCS5B01G521700 chr4A 96.296 81 2 1 334 414 627499479 627499400 8.490000e-27 132.0
26 TraesCS5B01G521700 chr4A 90.110 91 6 1 486 573 627499358 627499268 8.550000e-22 115.0
27 TraesCS5B01G521700 chr7B 97.598 333 8 0 1 333 706523414 706523082 4.220000e-159 571.0
28 TraesCS5B01G521700 chr7B 87.321 418 40 12 3359 3767 629248766 629248353 2.050000e-127 466.0
29 TraesCS5B01G521700 chr7B 97.414 232 6 0 2 233 552839481 552839250 2.730000e-106 396.0
30 TraesCS5B01G521700 chr7D 95.195 333 16 0 1 333 371838394 371838062 9.270000e-146 527.0
31 TraesCS5B01G521700 chr7D 88.020 409 36 10 3366 3767 578321720 578322122 4.410000e-129 472.0
32 TraesCS5B01G521700 chr7D 87.398 246 25 5 3101 3344 453086798 453086557 1.030000e-70 278.0
33 TraesCS5B01G521700 chr7D 80.000 125 22 3 2978 3100 490781045 490780922 5.190000e-14 89.8
34 TraesCS5B01G521700 chr1A 95.166 331 16 0 3 333 30766234 30766564 1.200000e-144 523.0
35 TraesCS5B01G521700 chr1A 86.538 416 44 7 3359 3767 218124331 218123921 7.430000e-122 448.0
36 TraesCS5B01G521700 chr1A 94.850 233 12 0 101 333 369590732 369590964 7.690000e-97 364.0
37 TraesCS5B01G521700 chr6D 94.294 333 19 0 1 333 224421104 224421436 9.340000e-141 510.0
38 TraesCS5B01G521700 chr6D 85.887 248 28 6 3101 3345 344221795 344221552 1.340000e-64 257.0
39 TraesCS5B01G521700 chr1D 93.958 331 20 0 3 333 361393918 361393588 5.620000e-138 501.0
40 TraesCS5B01G521700 chr1D 87.105 411 41 11 3359 3767 314880872 314881272 4.440000e-124 455.0
41 TraesCS5B01G521700 chr3B 88.010 417 39 9 3359 3767 377400161 377400574 2.040000e-132 483.0
42 TraesCS5B01G521700 chr3B 80.469 128 22 3 2975 3100 161341808 161341934 1.110000e-15 95.3
43 TraesCS5B01G521700 chr3B 90.196 51 4 1 2972 3021 278447506 278447456 8.740000e-07 65.8
44 TraesCS5B01G521700 chr6B 92.492 333 25 0 1 333 290850981 290850649 9.470000e-131 477.0
45 TraesCS5B01G521700 chr6A 92.683 328 24 0 3 330 277549686 277550013 1.230000e-129 473.0
46 TraesCS5B01G521700 chr2B 87.081 418 35 12 3367 3767 194357762 194357347 4.440000e-124 455.0
47 TraesCS5B01G521700 chr3A 81.551 374 61 7 2975 3344 116007486 116007117 6.120000e-78 302.0
48 TraesCS5B01G521700 chr4D 87.398 246 22 5 3102 3344 87353846 87354085 1.330000e-69 274.0
49 TraesCS5B01G521700 chr4D 86.179 246 27 5 3101 3344 402832453 402832213 3.730000e-65 259.0
50 TraesCS5B01G521700 chr4D 82.584 178 26 4 2928 3102 466811755 466811580 6.520000e-33 152.0
51 TraesCS5B01G521700 chr4D 79.845 129 19 5 2975 3099 159647513 159647388 1.860000e-13 87.9
52 TraesCS5B01G521700 chr3D 87.097 248 22 8 3101 3344 381871491 381871732 4.800000e-69 272.0
53 TraesCS5B01G521700 chr2A 86.475 244 27 4 3101 3344 156807601 156807838 2.890000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G521700 chr5B 683594970 683598738 3768 False 6961.0 6961 100.000000 1 3769 1 chr5B.!!$F2 3768
1 TraesCS5B01G521700 chr5D 540804288 540806993 2705 True 1033.0 1046 86.760500 782 2735 2 chr5D.!!$R2 1953
2 TraesCS5B01G521700 chr5D 541875364 541879655 4291 False 849.6 1724 93.074600 591 3769 5 chr5D.!!$F3 3178
3 TraesCS5B01G521700 chr5D 541390968 541393245 2277 True 693.0 1007 88.405667 495 2626 3 chr5D.!!$R3 2131
4 TraesCS5B01G521700 chr5D 541700691 541702773 2082 False 538.0 1171 89.261750 591 2577 4 chr5D.!!$F2 1986
5 TraesCS5B01G521700 chr4A 627496822 627499479 2657 True 605.0 1260 92.125750 334 2672 4 chr4A.!!$R2 2338
6 TraesCS5B01G521700 chr4A 627475316 627476410 1094 True 496.0 883 92.324333 2671 3769 3 chr4A.!!$R1 1098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.033109 ACCTGGGGCCTAAAATCAGC 60.033 55.000 0.84 0.0 0.00 4.26 F
280 281 0.034574 TTCACGCCCAGCCAATGTAT 60.035 50.000 0.00 0.0 0.00 2.29 F
459 477 0.035820 TGGTACCATGGCGTTTCCTC 60.036 55.000 11.60 0.0 35.26 3.71 F
731 803 0.179032 TTTGCGGGAAAGAGAGCACA 60.179 50.000 0.00 0.0 39.51 4.57 F
734 806 0.246635 GCGGGAAAGAGAGCACAGTA 59.753 55.000 0.00 0.0 0.00 2.74 F
1003 1125 1.074072 ACGGTGCATAAGCCCACAA 59.926 52.632 0.00 0.0 41.13 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1682 0.250684 ATGCATTGTGGTCGTGGTCA 60.251 50.000 0.0 0.0 0.00 4.02 R
2004 3089 0.517316 GAGTTCCATGTTGTCGTGGC 59.483 55.000 2.0 0.0 46.99 5.01 R
2161 3251 0.979709 TGCCTCCATCTCTGACCTGG 60.980 60.000 0.0 0.0 0.00 4.45 R
2255 3345 2.162208 GGACGCTCTTTCAATCATTGCA 59.838 45.455 0.0 0.0 0.00 4.08 R
2390 3480 2.343758 GAGCTGGTGCCTTCGTCA 59.656 61.111 0.0 0.0 40.80 4.35 R
2832 3928 0.752658 GGCACAAACAAAGGGAAGCT 59.247 50.000 0.0 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.438346 CGAAAGCGGTAGGGATGG 57.562 61.111 0.00 0.00 0.00 3.51
26 27 1.820581 CGAAAGCGGTAGGGATGGA 59.179 57.895 0.00 0.00 0.00 3.41
27 28 0.529992 CGAAAGCGGTAGGGATGGAC 60.530 60.000 0.00 0.00 0.00 4.02
28 29 0.539986 GAAAGCGGTAGGGATGGACA 59.460 55.000 0.00 0.00 0.00 4.02
29 30 1.141053 GAAAGCGGTAGGGATGGACAT 59.859 52.381 0.00 0.00 0.00 3.06
30 31 0.469917 AAGCGGTAGGGATGGACATG 59.530 55.000 0.00 0.00 0.00 3.21
31 32 1.071471 GCGGTAGGGATGGACATGG 59.929 63.158 0.00 0.00 0.00 3.66
32 33 1.071471 CGGTAGGGATGGACATGGC 59.929 63.158 0.00 0.00 0.00 4.40
33 34 1.456287 GGTAGGGATGGACATGGCC 59.544 63.158 12.04 12.04 0.00 5.36
34 35 1.071471 GTAGGGATGGACATGGCCG 59.929 63.158 14.43 0.00 0.00 6.13
35 36 2.146724 TAGGGATGGACATGGCCGG 61.147 63.158 14.43 0.00 0.00 6.13
37 38 4.195334 GGATGGACATGGCCGGCT 62.195 66.667 28.56 5.85 0.00 5.52
38 39 2.592861 GATGGACATGGCCGGCTC 60.593 66.667 28.56 16.08 0.00 4.70
39 40 4.195334 ATGGACATGGCCGGCTCC 62.195 66.667 28.56 25.00 0.00 4.70
53 54 2.673523 CTCCACCTGGGGCTGAAG 59.326 66.667 0.00 0.00 37.22 3.02
54 55 2.935481 TCCACCTGGGGCTGAAGG 60.935 66.667 0.00 0.00 39.65 3.46
55 56 4.052518 CCACCTGGGGCTGAAGGG 62.053 72.222 0.00 0.00 37.94 3.95
56 57 3.260100 CACCTGGGGCTGAAGGGT 61.260 66.667 0.00 0.00 37.94 4.34
57 58 3.260100 ACCTGGGGCTGAAGGGTG 61.260 66.667 0.00 0.00 37.94 4.61
58 59 3.260100 CCTGGGGCTGAAGGGTGT 61.260 66.667 0.00 0.00 0.00 4.16
59 60 2.352805 CTGGGGCTGAAGGGTGTC 59.647 66.667 0.00 0.00 0.00 3.67
60 61 3.256960 TGGGGCTGAAGGGTGTCC 61.257 66.667 0.00 0.00 0.00 4.02
61 62 3.256960 GGGGCTGAAGGGTGTCCA 61.257 66.667 0.00 0.00 34.83 4.02
62 63 2.840753 GGGGCTGAAGGGTGTCCAA 61.841 63.158 0.00 0.00 34.83 3.53
63 64 1.603739 GGGCTGAAGGGTGTCCAAC 60.604 63.158 0.00 0.00 34.83 3.77
64 65 1.150536 GGCTGAAGGGTGTCCAACA 59.849 57.895 0.00 0.00 34.83 3.33
65 66 0.251341 GGCTGAAGGGTGTCCAACAT 60.251 55.000 0.00 0.00 34.83 2.71
66 67 1.168714 GCTGAAGGGTGTCCAACATC 58.831 55.000 0.00 0.00 34.83 3.06
67 68 1.545428 GCTGAAGGGTGTCCAACATCA 60.545 52.381 0.00 0.00 28.66 3.07
68 69 2.881403 GCTGAAGGGTGTCCAACATCAT 60.881 50.000 0.00 0.00 28.66 2.45
69 70 3.622206 GCTGAAGGGTGTCCAACATCATA 60.622 47.826 0.00 0.00 28.66 2.15
70 71 4.194640 CTGAAGGGTGTCCAACATCATAG 58.805 47.826 0.00 0.00 28.66 2.23
71 72 3.843619 TGAAGGGTGTCCAACATCATAGA 59.156 43.478 0.00 0.00 28.66 1.98
72 73 3.914426 AGGGTGTCCAACATCATAGAC 57.086 47.619 0.00 0.00 28.66 2.59
73 74 2.505819 AGGGTGTCCAACATCATAGACC 59.494 50.000 0.00 0.00 28.66 3.85
74 75 2.421529 GGGTGTCCAACATCATAGACCC 60.422 54.545 0.00 0.00 38.16 4.46
75 76 2.238646 GGTGTCCAACATCATAGACCCA 59.761 50.000 0.00 0.00 0.00 4.51
76 77 3.117888 GGTGTCCAACATCATAGACCCAT 60.118 47.826 0.00 0.00 0.00 4.00
77 78 4.130118 GTGTCCAACATCATAGACCCATC 58.870 47.826 0.00 0.00 0.00 3.51
78 79 3.136443 TGTCCAACATCATAGACCCATCC 59.864 47.826 0.00 0.00 0.00 3.51
79 80 2.368548 TCCAACATCATAGACCCATCCG 59.631 50.000 0.00 0.00 0.00 4.18
80 81 2.146342 CAACATCATAGACCCATCCGC 58.854 52.381 0.00 0.00 0.00 5.54
81 82 0.687354 ACATCATAGACCCATCCGCC 59.313 55.000 0.00 0.00 0.00 6.13
82 83 0.390340 CATCATAGACCCATCCGCCG 60.390 60.000 0.00 0.00 0.00 6.46
83 84 0.832135 ATCATAGACCCATCCGCCGT 60.832 55.000 0.00 0.00 0.00 5.68
84 85 1.046472 TCATAGACCCATCCGCCGTT 61.046 55.000 0.00 0.00 0.00 4.44
85 86 0.880278 CATAGACCCATCCGCCGTTG 60.880 60.000 0.00 0.00 0.00 4.10
86 87 2.660258 ATAGACCCATCCGCCGTTGC 62.660 60.000 0.00 0.00 0.00 4.17
88 89 4.652131 ACCCATCCGCCGTTGCAA 62.652 61.111 0.00 0.00 37.32 4.08
89 90 3.369400 CCCATCCGCCGTTGCAAA 61.369 61.111 0.00 0.00 37.32 3.68
90 91 2.126502 CCATCCGCCGTTGCAAAC 60.127 61.111 0.00 0.00 45.31 2.93
100 101 2.858729 GTTGCAAACGTGACAGCAG 58.141 52.632 0.00 0.00 36.92 4.24
101 102 0.592247 GTTGCAAACGTGACAGCAGG 60.592 55.000 0.00 0.00 36.92 4.85
102 103 1.029408 TTGCAAACGTGACAGCAGGT 61.029 50.000 0.00 0.00 44.34 4.00
103 104 1.009675 GCAAACGTGACAGCAGGTG 60.010 57.895 0.00 0.00 41.86 4.00
104 105 1.714899 GCAAACGTGACAGCAGGTGT 61.715 55.000 4.51 4.51 41.86 4.16
105 106 0.732571 CAAACGTGACAGCAGGTGTT 59.267 50.000 6.72 0.00 41.86 3.32
106 107 1.132262 CAAACGTGACAGCAGGTGTTT 59.868 47.619 6.72 0.00 41.86 2.83
107 108 0.732571 AACGTGACAGCAGGTGTTTG 59.267 50.000 6.72 2.70 41.86 2.93
108 109 1.009675 CGTGACAGCAGGTGTTTGC 60.010 57.895 6.72 0.00 40.56 3.68
109 110 1.713937 CGTGACAGCAGGTGTTTGCA 61.714 55.000 6.72 0.00 46.47 4.08
110 111 0.670162 GTGACAGCAGGTGTTTGCAT 59.330 50.000 6.72 0.00 46.47 3.96
111 112 0.669619 TGACAGCAGGTGTTTGCATG 59.330 50.000 6.72 0.00 46.47 4.06
112 113 0.038892 GACAGCAGGTGTTTGCATGG 60.039 55.000 6.72 0.00 46.47 3.66
113 114 1.373748 CAGCAGGTGTTTGCATGGC 60.374 57.895 0.00 0.00 46.47 4.40
114 115 1.532316 AGCAGGTGTTTGCATGGCT 60.532 52.632 0.00 0.00 46.47 4.75
115 116 1.373748 GCAGGTGTTTGCATGGCTG 60.374 57.895 0.00 0.00 43.53 4.85
116 117 1.290955 CAGGTGTTTGCATGGCTGG 59.709 57.895 0.00 0.00 0.00 4.85
117 118 1.909781 AGGTGTTTGCATGGCTGGG 60.910 57.895 0.00 0.00 0.00 4.45
118 119 1.907807 GGTGTTTGCATGGCTGGGA 60.908 57.895 0.00 0.00 0.00 4.37
119 120 1.290009 GTGTTTGCATGGCTGGGAC 59.710 57.895 0.00 0.00 0.00 4.46
120 121 2.267351 TGTTTGCATGGCTGGGACG 61.267 57.895 0.00 0.00 0.00 4.79
121 122 2.676121 TTTGCATGGCTGGGACGG 60.676 61.111 0.00 0.00 38.10 4.79
122 123 3.203086 TTTGCATGGCTGGGACGGA 62.203 57.895 0.00 0.00 36.31 4.69
128 129 2.047179 GGCTGGGACGGACAAGTC 60.047 66.667 0.00 0.00 46.51 3.01
138 139 3.139029 GGACAAGTCCGTCATCACC 57.861 57.895 3.08 0.00 40.36 4.02
139 140 0.608640 GGACAAGTCCGTCATCACCT 59.391 55.000 3.08 0.00 40.36 4.00
140 141 1.673033 GGACAAGTCCGTCATCACCTG 60.673 57.143 3.08 0.00 40.36 4.00
141 142 0.321671 ACAAGTCCGTCATCACCTGG 59.678 55.000 0.00 0.00 0.00 4.45
142 143 0.391661 CAAGTCCGTCATCACCTGGG 60.392 60.000 0.00 0.00 0.00 4.45
143 144 1.553690 AAGTCCGTCATCACCTGGGG 61.554 60.000 0.00 0.00 0.00 4.96
144 145 3.399181 TCCGTCATCACCTGGGGC 61.399 66.667 0.00 0.00 0.00 5.80
145 146 4.489771 CCGTCATCACCTGGGGCC 62.490 72.222 0.00 0.00 0.00 5.80
146 147 3.402681 CGTCATCACCTGGGGCCT 61.403 66.667 0.84 0.00 0.00 5.19
147 148 2.063979 CGTCATCACCTGGGGCCTA 61.064 63.158 0.84 0.00 0.00 3.93
148 149 1.622607 CGTCATCACCTGGGGCCTAA 61.623 60.000 0.84 0.00 0.00 2.69
149 150 0.623723 GTCATCACCTGGGGCCTAAA 59.376 55.000 0.84 0.00 0.00 1.85
150 151 1.005450 GTCATCACCTGGGGCCTAAAA 59.995 52.381 0.84 0.00 0.00 1.52
151 152 1.929494 TCATCACCTGGGGCCTAAAAT 59.071 47.619 0.84 0.00 0.00 1.82
152 153 2.091885 TCATCACCTGGGGCCTAAAATC 60.092 50.000 0.84 0.00 0.00 2.17
153 154 1.377690 TCACCTGGGGCCTAAAATCA 58.622 50.000 0.84 0.00 0.00 2.57
154 155 1.284785 TCACCTGGGGCCTAAAATCAG 59.715 52.381 0.84 0.18 0.00 2.90
155 156 0.033109 ACCTGGGGCCTAAAATCAGC 60.033 55.000 0.84 0.00 0.00 4.26
156 157 0.756815 CCTGGGGCCTAAAATCAGCC 60.757 60.000 0.84 0.00 46.37 4.85
161 162 1.106285 GGCCTAAAATCAGCCACTGG 58.894 55.000 0.00 0.00 46.34 4.00
162 163 1.616994 GGCCTAAAATCAGCCACTGGT 60.617 52.381 0.00 0.00 46.34 4.00
163 164 1.474077 GCCTAAAATCAGCCACTGGTG 59.526 52.381 0.00 0.00 41.39 4.17
164 165 2.795329 CCTAAAATCAGCCACTGGTGT 58.205 47.619 0.00 0.00 40.84 4.16
165 166 3.872240 GCCTAAAATCAGCCACTGGTGTA 60.872 47.826 0.00 0.00 40.84 2.90
166 167 4.526970 CCTAAAATCAGCCACTGGTGTAT 58.473 43.478 0.00 0.00 40.84 2.29
167 168 4.336433 CCTAAAATCAGCCACTGGTGTATG 59.664 45.833 0.00 0.00 40.84 2.39
168 169 1.755179 AATCAGCCACTGGTGTATGC 58.245 50.000 0.00 0.00 40.84 3.14
169 170 0.620030 ATCAGCCACTGGTGTATGCA 59.380 50.000 0.00 0.00 40.84 3.96
170 171 0.620030 TCAGCCACTGGTGTATGCAT 59.380 50.000 3.79 3.79 40.84 3.96
171 172 0.736636 CAGCCACTGGTGTATGCATG 59.263 55.000 10.16 0.00 35.25 4.06
172 173 1.033746 AGCCACTGGTGTATGCATGC 61.034 55.000 11.82 11.82 0.00 4.06
173 174 1.314534 GCCACTGGTGTATGCATGCA 61.315 55.000 25.04 25.04 0.00 3.96
174 175 1.395635 CCACTGGTGTATGCATGCAT 58.604 50.000 33.92 33.92 40.19 3.96
175 176 1.066454 CCACTGGTGTATGCATGCATG 59.934 52.381 37.43 23.89 37.82 4.06
176 177 1.066454 CACTGGTGTATGCATGCATGG 59.934 52.381 37.43 22.35 37.82 3.66
177 178 1.341285 ACTGGTGTATGCATGCATGGT 60.341 47.619 37.43 22.88 37.82 3.55
178 179 1.752498 CTGGTGTATGCATGCATGGTT 59.248 47.619 37.43 19.12 37.82 3.67
179 180 1.477295 TGGTGTATGCATGCATGGTTG 59.523 47.619 37.43 4.59 37.82 3.77
190 191 2.100846 CATGGTTGCACATCCGAGG 58.899 57.895 0.00 0.00 0.00 4.63
191 192 0.392863 CATGGTTGCACATCCGAGGA 60.393 55.000 0.00 0.00 0.00 3.71
192 193 0.548031 ATGGTTGCACATCCGAGGAT 59.452 50.000 0.00 0.00 34.81 3.24
199 200 2.505982 CATCCGAGGATGGCCGTT 59.494 61.111 21.29 0.00 45.89 4.44
200 201 1.153168 CATCCGAGGATGGCCGTTT 60.153 57.895 21.29 0.00 45.89 3.60
201 202 0.105964 CATCCGAGGATGGCCGTTTA 59.894 55.000 21.29 0.00 45.89 2.01
202 203 0.393077 ATCCGAGGATGGCCGTTTAG 59.607 55.000 0.00 0.00 39.96 1.85
203 204 1.887707 CCGAGGATGGCCGTTTAGC 60.888 63.158 0.00 0.00 39.96 3.09
204 205 1.153449 CGAGGATGGCCGTTTAGCA 60.153 57.895 0.00 0.00 39.96 3.49
205 206 1.429148 CGAGGATGGCCGTTTAGCAC 61.429 60.000 0.00 0.00 39.96 4.40
206 207 1.077716 AGGATGGCCGTTTAGCACC 60.078 57.895 0.00 0.00 39.96 5.01
207 208 1.377987 GGATGGCCGTTTAGCACCA 60.378 57.895 0.00 0.00 36.43 4.17
208 209 0.751643 GGATGGCCGTTTAGCACCAT 60.752 55.000 0.00 0.00 45.52 3.55
209 210 0.381801 GATGGCCGTTTAGCACCATG 59.618 55.000 0.00 0.00 42.92 3.66
210 211 1.666209 ATGGCCGTTTAGCACCATGC 61.666 55.000 0.00 0.00 41.34 4.06
211 212 2.489751 GCCGTTTAGCACCATGCC 59.510 61.111 0.00 0.00 46.52 4.40
212 213 3.063743 GCCGTTTAGCACCATGCCC 62.064 63.158 0.00 0.00 46.52 5.36
213 214 1.677300 CCGTTTAGCACCATGCCCA 60.677 57.895 0.00 0.00 46.52 5.36
214 215 1.037030 CCGTTTAGCACCATGCCCAT 61.037 55.000 0.00 0.00 46.52 4.00
215 216 0.381801 CGTTTAGCACCATGCCCATC 59.618 55.000 0.00 0.00 46.52 3.51
216 217 0.746659 GTTTAGCACCATGCCCATCC 59.253 55.000 0.00 0.00 46.52 3.51
217 218 0.630673 TTTAGCACCATGCCCATCCT 59.369 50.000 0.00 0.00 46.52 3.24
218 219 0.106569 TTAGCACCATGCCCATCCTG 60.107 55.000 0.00 0.00 46.52 3.86
219 220 1.281199 TAGCACCATGCCCATCCTGT 61.281 55.000 0.00 0.00 46.52 4.00
220 221 2.420568 GCACCATGCCCATCCTGTG 61.421 63.158 0.00 0.00 37.42 3.66
221 222 2.043652 ACCATGCCCATCCTGTGC 60.044 61.111 0.00 0.00 0.00 4.57
222 223 2.043752 CCATGCCCATCCTGTGCA 60.044 61.111 0.00 0.00 39.68 4.57
223 224 1.456892 CCATGCCCATCCTGTGCAT 60.457 57.895 0.00 0.00 46.09 3.96
224 225 4.270482 ATGCCCATCCTGTGCATG 57.730 55.556 0.00 0.00 43.66 4.06
225 226 2.131709 ATGCCCATCCTGTGCATGC 61.132 57.895 11.82 11.82 43.66 4.06
226 227 2.756691 GCCCATCCTGTGCATGCA 60.757 61.111 18.46 18.46 0.00 3.96
227 228 2.131709 GCCCATCCTGTGCATGCAT 61.132 57.895 25.64 3.87 0.00 3.96
228 229 1.739667 CCCATCCTGTGCATGCATG 59.260 57.895 25.64 22.70 0.00 4.06
242 243 3.441163 CATGCATGCATGTTTGTACTCC 58.559 45.455 40.30 8.24 46.20 3.85
243 244 1.818060 TGCATGCATGTTTGTACTCCC 59.182 47.619 26.79 7.53 0.00 4.30
244 245 1.202177 GCATGCATGTTTGTACTCCCG 60.202 52.381 26.79 0.00 0.00 5.14
245 246 2.355197 CATGCATGTTTGTACTCCCGA 58.645 47.619 18.91 0.00 0.00 5.14
246 247 2.552599 TGCATGTTTGTACTCCCGAA 57.447 45.000 0.00 0.00 0.00 4.30
247 248 2.422597 TGCATGTTTGTACTCCCGAAG 58.577 47.619 0.00 0.00 0.00 3.79
248 249 1.130561 GCATGTTTGTACTCCCGAAGC 59.869 52.381 0.00 0.00 0.00 3.86
249 250 1.737793 CATGTTTGTACTCCCGAAGCC 59.262 52.381 0.00 0.00 0.00 4.35
250 251 0.320073 TGTTTGTACTCCCGAAGCCG 60.320 55.000 0.00 0.00 0.00 5.52
260 261 3.804193 CGAAGCCGGCCTTTGAGC 61.804 66.667 26.15 3.65 37.14 4.26
261 262 2.360475 GAAGCCGGCCTTTGAGCT 60.360 61.111 26.15 0.00 37.10 4.09
262 263 2.116125 AAGCCGGCCTTTGAGCTT 59.884 55.556 26.15 4.89 40.63 3.74
263 264 1.973812 AAGCCGGCCTTTGAGCTTC 60.974 57.895 26.15 0.00 41.60 3.86
264 265 2.672996 GCCGGCCTTTGAGCTTCA 60.673 61.111 18.11 0.00 0.00 3.02
265 266 2.982744 GCCGGCCTTTGAGCTTCAC 61.983 63.158 18.11 0.00 0.00 3.18
266 267 2.680913 CCGGCCTTTGAGCTTCACG 61.681 63.158 0.00 0.00 0.00 4.35
267 268 2.563427 GGCCTTTGAGCTTCACGC 59.437 61.111 0.00 0.00 39.57 5.34
268 269 2.563427 GCCTTTGAGCTTCACGCC 59.437 61.111 0.00 0.00 40.39 5.68
269 270 2.982744 GCCTTTGAGCTTCACGCCC 61.983 63.158 0.00 0.00 40.39 6.13
270 271 1.600636 CCTTTGAGCTTCACGCCCA 60.601 57.895 0.00 0.00 40.39 5.36
271 272 1.580845 CCTTTGAGCTTCACGCCCAG 61.581 60.000 0.00 0.00 40.39 4.45
272 273 2.192608 CTTTGAGCTTCACGCCCAGC 62.193 60.000 0.00 0.00 40.39 4.85
273 274 4.704833 TGAGCTTCACGCCCAGCC 62.705 66.667 0.00 0.00 40.39 4.85
274 275 4.704833 GAGCTTCACGCCCAGCCA 62.705 66.667 0.00 0.00 40.39 4.75
275 276 4.269523 AGCTTCACGCCCAGCCAA 62.270 61.111 0.00 0.00 40.39 4.52
276 277 3.064324 GCTTCACGCCCAGCCAAT 61.064 61.111 0.00 0.00 0.00 3.16
277 278 2.879907 CTTCACGCCCAGCCAATG 59.120 61.111 0.00 0.00 0.00 2.82
278 279 1.973281 CTTCACGCCCAGCCAATGT 60.973 57.895 0.00 0.00 0.00 2.71
279 280 0.676466 CTTCACGCCCAGCCAATGTA 60.676 55.000 0.00 0.00 0.00 2.29
280 281 0.034574 TTCACGCCCAGCCAATGTAT 60.035 50.000 0.00 0.00 0.00 2.29
281 282 0.747644 TCACGCCCAGCCAATGTATG 60.748 55.000 0.00 0.00 0.00 2.39
282 283 2.120909 ACGCCCAGCCAATGTATGC 61.121 57.895 0.00 0.00 0.00 3.14
283 284 1.825191 CGCCCAGCCAATGTATGCT 60.825 57.895 0.00 0.00 38.67 3.79
284 285 1.386525 CGCCCAGCCAATGTATGCTT 61.387 55.000 0.00 0.00 35.12 3.91
285 286 0.103572 GCCCAGCCAATGTATGCTTG 59.896 55.000 0.00 0.00 35.12 4.01
286 287 0.103572 CCCAGCCAATGTATGCTTGC 59.896 55.000 0.00 0.00 35.12 4.01
287 288 0.818938 CCAGCCAATGTATGCTTGCA 59.181 50.000 0.00 0.00 35.12 4.08
288 289 1.205179 CCAGCCAATGTATGCTTGCAA 59.795 47.619 0.00 0.00 35.12 4.08
289 290 2.536365 CAGCCAATGTATGCTTGCAAG 58.464 47.619 22.44 22.44 35.12 4.01
290 291 1.479323 AGCCAATGTATGCTTGCAAGG 59.521 47.619 27.10 9.74 32.94 3.61
291 292 1.930567 CCAATGTATGCTTGCAAGGC 58.069 50.000 27.10 18.97 0.00 4.35
292 293 1.479323 CCAATGTATGCTTGCAAGGCT 59.521 47.619 27.10 11.67 0.00 4.58
293 294 2.536365 CAATGTATGCTTGCAAGGCTG 58.464 47.619 27.10 3.67 0.00 4.85
294 295 1.843368 ATGTATGCTTGCAAGGCTGT 58.157 45.000 27.10 14.03 0.00 4.40
295 296 0.883153 TGTATGCTTGCAAGGCTGTG 59.117 50.000 27.10 2.48 0.00 3.66
296 297 1.167851 GTATGCTTGCAAGGCTGTGA 58.832 50.000 27.10 5.07 0.00 3.58
297 298 1.541147 GTATGCTTGCAAGGCTGTGAA 59.459 47.619 27.10 4.73 0.00 3.18
298 299 0.601558 ATGCTTGCAAGGCTGTGAAG 59.398 50.000 27.10 0.00 0.00 3.02
299 300 1.372623 GCTTGCAAGGCTGTGAAGC 60.373 57.895 27.10 7.04 34.83 3.86
306 307 4.021925 GGCTGTGAAGCCGGTCCT 62.022 66.667 1.90 0.00 45.79 3.85
307 308 2.032681 GCTGTGAAGCCGGTCCTT 59.967 61.111 1.90 0.00 0.00 3.36
308 309 2.035442 GCTGTGAAGCCGGTCCTTC 61.035 63.158 13.26 13.26 41.21 3.46
309 310 1.371183 CTGTGAAGCCGGTCCTTCA 59.629 57.895 17.52 17.52 46.48 3.02
311 312 3.885814 TGAAGCCGGTCCTTCAGT 58.114 55.556 17.52 0.00 44.49 3.41
312 313 3.060828 TGAAGCCGGTCCTTCAGTA 57.939 52.632 17.52 0.00 44.49 2.74
313 314 0.606604 TGAAGCCGGTCCTTCAGTAC 59.393 55.000 17.52 0.00 44.49 2.73
314 315 0.108281 GAAGCCGGTCCTTCAGTACC 60.108 60.000 14.78 0.00 40.67 3.34
315 316 0.834687 AAGCCGGTCCTTCAGTACCA 60.835 55.000 1.90 0.00 35.35 3.25
316 317 1.079336 GCCGGTCCTTCAGTACCAC 60.079 63.158 1.90 0.00 35.35 4.16
317 318 1.214589 CCGGTCCTTCAGTACCACG 59.785 63.158 0.00 0.00 35.35 4.94
318 319 1.445582 CGGTCCTTCAGTACCACGC 60.446 63.158 0.00 0.00 35.35 5.34
319 320 1.079336 GGTCCTTCAGTACCACGCC 60.079 63.158 0.00 0.00 35.73 5.68
320 321 1.079336 GTCCTTCAGTACCACGCCC 60.079 63.158 0.00 0.00 0.00 6.13
321 322 1.534476 TCCTTCAGTACCACGCCCA 60.534 57.895 0.00 0.00 0.00 5.36
322 323 1.079127 CCTTCAGTACCACGCCCAG 60.079 63.158 0.00 0.00 0.00 4.45
323 324 1.741770 CTTCAGTACCACGCCCAGC 60.742 63.158 0.00 0.00 0.00 4.85
324 325 3.248446 TTCAGTACCACGCCCAGCC 62.248 63.158 0.00 0.00 0.00 4.85
348 349 4.466015 GGGGCCAGATAAATTTGACTTTGA 59.534 41.667 4.39 0.00 0.00 2.69
440 458 5.327737 TTGGTAACCAAAACCTATGGAGT 57.672 39.130 0.00 0.00 40.92 3.85
441 459 4.658063 TGGTAACCAAAACCTATGGAGTG 58.342 43.478 0.00 0.00 40.56 3.51
442 460 4.014406 GGTAACCAAAACCTATGGAGTGG 58.986 47.826 0.00 0.00 40.56 4.00
443 461 3.895704 AACCAAAACCTATGGAGTGGT 57.104 42.857 0.00 0.00 40.56 4.16
444 462 5.280624 GGTAACCAAAACCTATGGAGTGGTA 60.281 44.000 0.00 0.64 40.56 3.25
445 463 4.296621 ACCAAAACCTATGGAGTGGTAC 57.703 45.455 0.00 0.00 40.56 3.34
446 464 3.009805 ACCAAAACCTATGGAGTGGTACC 59.990 47.826 4.43 4.43 40.56 3.34
447 465 3.009695 CCAAAACCTATGGAGTGGTACCA 59.990 47.826 11.60 11.60 40.56 3.25
449 467 4.503714 AAACCTATGGAGTGGTACCATG 57.496 45.455 19.72 2.92 46.05 3.66
450 468 2.408565 ACCTATGGAGTGGTACCATGG 58.591 52.381 19.72 11.19 46.05 3.66
451 469 1.072331 CCTATGGAGTGGTACCATGGC 59.928 57.143 19.72 10.31 46.05 4.40
452 470 0.756294 TATGGAGTGGTACCATGGCG 59.244 55.000 19.72 0.00 46.05 5.69
453 471 1.271840 ATGGAGTGGTACCATGGCGT 61.272 55.000 19.72 1.91 45.05 5.68
454 472 1.298667 GGAGTGGTACCATGGCGTT 59.701 57.895 19.72 0.00 0.00 4.84
455 473 0.322187 GGAGTGGTACCATGGCGTTT 60.322 55.000 19.72 0.00 0.00 3.60
456 474 1.084289 GAGTGGTACCATGGCGTTTC 58.916 55.000 19.72 1.94 0.00 2.78
457 475 0.322187 AGTGGTACCATGGCGTTTCC 60.322 55.000 19.72 7.91 0.00 3.13
458 476 0.322187 GTGGTACCATGGCGTTTCCT 60.322 55.000 19.72 0.00 35.26 3.36
459 477 0.035820 TGGTACCATGGCGTTTCCTC 60.036 55.000 11.60 0.00 35.26 3.71
460 478 1.087771 GGTACCATGGCGTTTCCTCG 61.088 60.000 13.04 0.00 35.26 4.63
461 479 0.390735 GTACCATGGCGTTTCCTCGT 60.391 55.000 13.04 0.00 35.26 4.18
462 480 0.390603 TACCATGGCGTTTCCTCGTG 60.391 55.000 13.04 0.00 35.26 4.35
463 481 2.480555 CATGGCGTTTCCTCGTGC 59.519 61.111 0.00 0.00 35.26 5.34
464 482 2.034879 CATGGCGTTTCCTCGTGCT 61.035 57.895 0.00 0.00 35.26 4.40
465 483 2.034879 ATGGCGTTTCCTCGTGCTG 61.035 57.895 0.00 0.00 35.26 4.41
466 484 4.090057 GGCGTTTCCTCGTGCTGC 62.090 66.667 0.00 0.00 0.00 5.25
467 485 4.430423 GCGTTTCCTCGTGCTGCG 62.430 66.667 0.00 0.00 43.01 5.18
469 487 2.853914 GTTTCCTCGTGCTGCGAC 59.146 61.111 0.00 0.00 45.68 5.19
470 488 1.954146 GTTTCCTCGTGCTGCGACA 60.954 57.895 0.00 0.00 45.68 4.35
471 489 1.954146 TTTCCTCGTGCTGCGACAC 60.954 57.895 0.00 0.00 45.68 3.67
472 490 2.363711 TTTCCTCGTGCTGCGACACT 62.364 55.000 7.26 0.00 45.68 3.55
473 491 3.108289 CCTCGTGCTGCGACACTG 61.108 66.667 7.26 2.03 45.68 3.66
474 492 3.108289 CTCGTGCTGCGACACTGG 61.108 66.667 7.26 0.00 45.68 4.00
475 493 3.558099 CTCGTGCTGCGACACTGGA 62.558 63.158 7.26 0.00 45.68 3.86
476 494 3.406361 CGTGCTGCGACACTGGAC 61.406 66.667 7.26 0.00 44.77 4.02
477 495 3.044305 GTGCTGCGACACTGGACC 61.044 66.667 1.88 0.00 37.58 4.46
478 496 3.233980 TGCTGCGACACTGGACCT 61.234 61.111 0.00 0.00 0.00 3.85
479 497 2.740055 GCTGCGACACTGGACCTG 60.740 66.667 0.00 0.00 0.00 4.00
480 498 2.047844 CTGCGACACTGGACCTGG 60.048 66.667 3.15 0.00 0.00 4.45
481 499 2.523168 TGCGACACTGGACCTGGA 60.523 61.111 0.00 0.00 0.00 3.86
482 500 1.892819 CTGCGACACTGGACCTGGAT 61.893 60.000 0.00 0.00 0.00 3.41
483 501 1.448540 GCGACACTGGACCTGGATG 60.449 63.158 0.00 0.00 0.00 3.51
484 502 1.448540 CGACACTGGACCTGGATGC 60.449 63.158 0.00 0.00 0.00 3.91
513 531 2.747989 GGTAGAGATATCATCGCCGTCA 59.252 50.000 5.32 0.00 0.00 4.35
573 594 0.530744 GTGAGACCGTGGCATGTAGA 59.469 55.000 5.89 0.00 0.00 2.59
574 595 1.137086 GTGAGACCGTGGCATGTAGAT 59.863 52.381 5.89 0.00 0.00 1.98
575 596 1.136891 TGAGACCGTGGCATGTAGATG 59.863 52.381 5.89 0.00 0.00 2.90
576 597 0.465705 AGACCGTGGCATGTAGATGG 59.534 55.000 5.89 0.00 0.00 3.51
583 604 2.723231 GCATGTAGATGGCATGGCA 58.277 52.632 25.52 25.52 42.72 4.92
585 606 2.439409 GCATGTAGATGGCATGGCATA 58.561 47.619 32.28 18.66 42.72 3.14
586 607 2.163010 GCATGTAGATGGCATGGCATAC 59.837 50.000 32.28 26.58 42.72 2.39
587 608 3.682696 CATGTAGATGGCATGGCATACT 58.317 45.455 32.28 28.32 39.82 2.12
588 609 3.862877 TGTAGATGGCATGGCATACTT 57.137 42.857 32.28 22.32 0.00 2.24
589 610 4.972751 TGTAGATGGCATGGCATACTTA 57.027 40.909 32.28 21.40 0.00 2.24
613 679 6.783708 TCTGGTGTGTTTCCTTGTATTTTT 57.216 33.333 0.00 0.00 0.00 1.94
618 686 5.757808 GTGTGTTTCCTTGTATTTTTGCCAT 59.242 36.000 0.00 0.00 0.00 4.40
677 748 1.023513 AGCATCGCTCTGGAACAAGC 61.024 55.000 0.00 0.00 38.70 4.01
706 778 3.643763 CAGAGAGAGCACAGTACGTTTT 58.356 45.455 0.00 0.00 0.00 2.43
729 801 1.686355 TTTTTGCGGGAAAGAGAGCA 58.314 45.000 0.00 0.00 37.89 4.26
730 802 0.951558 TTTTGCGGGAAAGAGAGCAC 59.048 50.000 0.00 0.00 39.51 4.40
731 803 0.179032 TTTGCGGGAAAGAGAGCACA 60.179 50.000 0.00 0.00 39.51 4.57
732 804 0.603707 TTGCGGGAAAGAGAGCACAG 60.604 55.000 0.00 0.00 39.51 3.66
733 805 1.004440 GCGGGAAAGAGAGCACAGT 60.004 57.895 0.00 0.00 0.00 3.55
734 806 0.246635 GCGGGAAAGAGAGCACAGTA 59.753 55.000 0.00 0.00 0.00 2.74
735 807 1.997669 CGGGAAAGAGAGCACAGTAC 58.002 55.000 0.00 0.00 0.00 2.73
736 808 1.732732 CGGGAAAGAGAGCACAGTACG 60.733 57.143 0.00 0.00 0.00 3.67
737 809 1.272769 GGGAAAGAGAGCACAGTACGT 59.727 52.381 0.00 0.00 0.00 3.57
738 810 2.288886 GGGAAAGAGAGCACAGTACGTT 60.289 50.000 0.00 0.00 0.00 3.99
739 811 3.391049 GGAAAGAGAGCACAGTACGTTT 58.609 45.455 0.00 0.00 0.00 3.60
740 812 3.808174 GGAAAGAGAGCACAGTACGTTTT 59.192 43.478 0.00 0.00 0.00 2.43
741 813 4.272748 GGAAAGAGAGCACAGTACGTTTTT 59.727 41.667 0.00 0.00 0.00 1.94
882 963 1.135527 TCGGCCGAATTCGTGTCTAAT 59.864 47.619 28.99 0.00 37.74 1.73
899 980 5.301805 TGTCTAATGCAGAATCGTATCAGGA 59.698 40.000 0.00 0.00 34.17 3.86
925 1006 4.436998 CCCGAGTCGGTCTGCACC 62.437 72.222 28.98 0.00 46.80 5.01
1003 1125 1.074072 ACGGTGCATAAGCCCACAA 59.926 52.632 0.00 0.00 41.13 3.33
1043 1182 3.119137 ACCACCACACAAAGAAAGAAAGC 60.119 43.478 0.00 0.00 0.00 3.51
1522 1677 4.254492 GTTTGAGTGGGAGGTGATACTTC 58.746 47.826 0.00 0.00 0.00 3.01
1527 1682 4.366267 AGTGGGAGGTGATACTTCTCAAT 58.634 43.478 0.00 0.00 36.40 2.57
1538 1693 1.691976 ACTTCTCAATGACCACGACCA 59.308 47.619 0.00 0.00 0.00 4.02
1751 1935 7.633789 AGGTGCATAATTTTCTCTCCTTTCTA 58.366 34.615 0.00 0.00 0.00 2.10
1800 1985 2.876550 GGCACTACTCGGAAGTTTGTTT 59.123 45.455 0.00 0.00 36.92 2.83
1957 3042 2.186076 CACATCTTAGCTCGGTCGAAC 58.814 52.381 0.00 0.00 0.00 3.95
1972 3057 1.749258 GAACGATTGGACCCTGGGC 60.749 63.158 14.08 5.57 0.00 5.36
2038 3123 2.164624 GGAACTCGCTCTTCAGCTAAGA 59.835 50.000 0.00 0.00 44.40 2.10
2247 3337 2.100989 ACGCGTCCCTCTTATTCTTCT 58.899 47.619 5.58 0.00 0.00 2.85
2253 3343 4.160626 CGTCCCTCTTATTCTTCTGGAAGT 59.839 45.833 9.73 0.00 39.38 3.01
2255 3345 5.423931 GTCCCTCTTATTCTTCTGGAAGTCT 59.576 44.000 9.73 2.59 39.38 3.24
2390 3480 4.161102 AGTTATATAAGGAAGCTCCGCCT 58.839 43.478 0.00 0.00 42.75 5.52
2500 3590 0.038744 AGACGAGTTCTTACGGGGGA 59.961 55.000 0.00 0.00 0.00 4.81
2606 3698 0.035317 TCTGTTTGACGGATGCTGCT 59.965 50.000 0.00 0.00 0.00 4.24
2674 3769 4.991153 TGTGCCAAATGTTGTTCTTGTA 57.009 36.364 0.00 0.00 0.00 2.41
2683 3778 5.779806 ATGTTGTTCTTGTACACTATCGC 57.220 39.130 0.00 0.00 0.00 4.58
2690 3786 1.904144 TGTACACTATCGCGAACTGC 58.096 50.000 15.24 0.43 41.47 4.40
2752 3848 6.159299 TCAGAAAAGCATTGAAACATTCCA 57.841 33.333 0.00 0.00 0.00 3.53
2832 3928 7.285629 TGTCTTCTCTCTCTGTTTTCTTCTGTA 59.714 37.037 0.00 0.00 0.00 2.74
2865 3961 5.352284 TGTTTGTGCCGAAAAACATACATT 58.648 33.333 0.00 0.00 40.41 2.71
2913 4009 2.157640 AGGTGGGATCTCTCTCTGTG 57.842 55.000 0.00 0.00 0.00 3.66
2914 4010 1.360852 AGGTGGGATCTCTCTCTGTGT 59.639 52.381 0.00 0.00 0.00 3.72
2915 4011 2.183679 GGTGGGATCTCTCTCTGTGTT 58.816 52.381 0.00 0.00 0.00 3.32
2916 4012 2.569404 GGTGGGATCTCTCTCTGTGTTT 59.431 50.000 0.00 0.00 0.00 2.83
2917 4013 3.008485 GGTGGGATCTCTCTCTGTGTTTT 59.992 47.826 0.00 0.00 0.00 2.43
2918 4014 4.249661 GTGGGATCTCTCTCTGTGTTTTC 58.750 47.826 0.00 0.00 0.00 2.29
2919 4015 4.020662 GTGGGATCTCTCTCTGTGTTTTCT 60.021 45.833 0.00 0.00 0.00 2.52
2920 4016 4.594920 TGGGATCTCTCTCTGTGTTTTCTT 59.405 41.667 0.00 0.00 0.00 2.52
2921 4017 5.175127 GGGATCTCTCTCTGTGTTTTCTTC 58.825 45.833 0.00 0.00 0.00 2.87
2922 4018 5.046663 GGGATCTCTCTCTGTGTTTTCTTCT 60.047 44.000 0.00 0.00 0.00 2.85
2923 4019 6.099341 GGATCTCTCTCTGTGTTTTCTTCTC 58.901 44.000 0.00 0.00 0.00 2.87
2924 4020 6.071391 GGATCTCTCTCTGTGTTTTCTTCTCT 60.071 42.308 0.00 0.00 0.00 3.10
2925 4021 6.083098 TCTCTCTCTGTGTTTTCTTCTCTG 57.917 41.667 0.00 0.00 0.00 3.35
2926 4022 5.010516 TCTCTCTCTGTGTTTTCTTCTCTGG 59.989 44.000 0.00 0.00 0.00 3.86
2927 4023 4.651503 TCTCTCTGTGTTTTCTTCTCTGGT 59.348 41.667 0.00 0.00 0.00 4.00
2928 4024 4.950050 TCTCTGTGTTTTCTTCTCTGGTC 58.050 43.478 0.00 0.00 0.00 4.02
2929 4025 4.651503 TCTCTGTGTTTTCTTCTCTGGTCT 59.348 41.667 0.00 0.00 0.00 3.85
2930 4026 4.950050 TCTGTGTTTTCTTCTCTGGTCTC 58.050 43.478 0.00 0.00 0.00 3.36
2931 4027 4.651503 TCTGTGTTTTCTTCTCTGGTCTCT 59.348 41.667 0.00 0.00 0.00 3.10
2932 4028 4.950050 TGTGTTTTCTTCTCTGGTCTCTC 58.050 43.478 0.00 0.00 0.00 3.20
2933 4029 4.651503 TGTGTTTTCTTCTCTGGTCTCTCT 59.348 41.667 0.00 0.00 0.00 3.10
2934 4030 4.987912 GTGTTTTCTTCTCTGGTCTCTCTG 59.012 45.833 0.00 0.00 0.00 3.35
2935 4031 4.651503 TGTTTTCTTCTCTGGTCTCTCTGT 59.348 41.667 0.00 0.00 0.00 3.41
2936 4032 4.862902 TTTCTTCTCTGGTCTCTCTGTG 57.137 45.455 0.00 0.00 0.00 3.66
2937 4033 3.517296 TCTTCTCTGGTCTCTCTGTGT 57.483 47.619 0.00 0.00 0.00 3.72
2938 4034 3.838565 TCTTCTCTGGTCTCTCTGTGTT 58.161 45.455 0.00 0.00 0.00 3.32
2939 4035 4.219115 TCTTCTCTGGTCTCTCTGTGTTT 58.781 43.478 0.00 0.00 0.00 2.83
2940 4036 4.651503 TCTTCTCTGGTCTCTCTGTGTTTT 59.348 41.667 0.00 0.00 0.00 2.43
2941 4037 4.592485 TCTCTGGTCTCTCTGTGTTTTC 57.408 45.455 0.00 0.00 0.00 2.29
2942 4038 4.219115 TCTCTGGTCTCTCTGTGTTTTCT 58.781 43.478 0.00 0.00 0.00 2.52
2943 4039 4.651503 TCTCTGGTCTCTCTGTGTTTTCTT 59.348 41.667 0.00 0.00 0.00 2.52
2944 4040 4.950050 TCTGGTCTCTCTGTGTTTTCTTC 58.050 43.478 0.00 0.00 0.00 2.87
2945 4041 4.651503 TCTGGTCTCTCTGTGTTTTCTTCT 59.348 41.667 0.00 0.00 0.00 2.85
2946 4042 4.950050 TGGTCTCTCTGTGTTTTCTTCTC 58.050 43.478 0.00 0.00 0.00 2.87
2947 4043 4.651503 TGGTCTCTCTGTGTTTTCTTCTCT 59.348 41.667 0.00 0.00 0.00 3.10
2948 4044 4.987912 GGTCTCTCTGTGTTTTCTTCTCTG 59.012 45.833 0.00 0.00 0.00 3.35
2949 4045 4.987912 GTCTCTCTGTGTTTTCTTCTCTGG 59.012 45.833 0.00 0.00 0.00 3.86
2950 4046 3.733337 TCTCTGTGTTTTCTTCTCTGGC 58.267 45.455 0.00 0.00 0.00 4.85
2951 4047 3.389329 TCTCTGTGTTTTCTTCTCTGGCT 59.611 43.478 0.00 0.00 0.00 4.75
2952 4048 3.733337 TCTGTGTTTTCTTCTCTGGCTC 58.267 45.455 0.00 0.00 0.00 4.70
2953 4049 2.810852 CTGTGTTTTCTTCTCTGGCTCC 59.189 50.000 0.00 0.00 0.00 4.70
2954 4050 2.155279 GTGTTTTCTTCTCTGGCTCCC 58.845 52.381 0.00 0.00 0.00 4.30
2955 4051 2.057922 TGTTTTCTTCTCTGGCTCCCT 58.942 47.619 0.00 0.00 0.00 4.20
2956 4052 2.443255 TGTTTTCTTCTCTGGCTCCCTT 59.557 45.455 0.00 0.00 0.00 3.95
2997 4093 6.309389 ACCGTTTCTTATATTCCCAGAGTT 57.691 37.500 0.00 0.00 0.00 3.01
3005 4101 8.985315 TCTTATATTCCCAGAGTTCGTAACTA 57.015 34.615 1.08 0.00 43.03 2.24
3023 4119 7.118422 GTAACTACGATTGGGCTGAAATATC 57.882 40.000 0.00 0.00 0.00 1.63
3038 4134 6.092807 GCTGAAATATCGAGGGGATGTTTATC 59.907 42.308 0.00 0.00 43.78 1.75
3039 4135 7.316393 TGAAATATCGAGGGGATGTTTATCT 57.684 36.000 0.00 0.00 43.78 1.98
3107 4203 1.553690 GGTAGCCACAAGCCCTCTGA 61.554 60.000 0.00 0.00 45.47 3.27
3108 4204 0.107945 GTAGCCACAAGCCCTCTGAG 60.108 60.000 0.00 0.00 45.47 3.35
3111 4207 1.302285 CCACAAGCCCTCTGAGCAT 59.698 57.895 0.00 0.00 0.00 3.79
3112 4208 0.747283 CCACAAGCCCTCTGAGCATC 60.747 60.000 0.00 0.00 0.00 3.91
3113 4209 1.088340 CACAAGCCCTCTGAGCATCG 61.088 60.000 0.00 0.00 38.61 3.84
3116 4244 0.975040 AAGCCCTCTGAGCATCGTCT 60.975 55.000 0.00 0.00 38.61 4.18
3213 5349 9.919416 TGGACTTCATTTGATATGGATTTTCTA 57.081 29.630 0.00 0.00 0.00 2.10
3248 5384 0.963962 CAACAAACAGGAGCTGGCAT 59.036 50.000 0.00 0.00 35.51 4.40
3364 5513 8.755696 AAAAATGTTATGCGTATCACACATTT 57.244 26.923 15.83 15.83 45.06 2.32
3400 5551 8.261492 CCAAAGGCATTCATATAGAGTCATAC 57.739 38.462 0.00 0.00 0.00 2.39
3405 5556 8.965819 AGGCATTCATATAGAGTCATACTGTAG 58.034 37.037 0.00 0.00 26.94 2.74
3461 5612 7.387673 TGACCATAATTATTAGAGCATTGTCCG 59.612 37.037 0.00 0.00 0.00 4.79
3478 5629 3.192844 TGTCCGAGTGAGGAAAGTATGAC 59.807 47.826 0.00 0.00 42.77 3.06
3484 5635 4.282496 AGTGAGGAAAGTATGACGGAGAT 58.718 43.478 0.00 0.00 0.00 2.75
3491 5642 6.721668 AGGAAAGTATGACGGAGATGATGATA 59.278 38.462 0.00 0.00 0.00 2.15
3494 5645 4.707448 AGTATGACGGAGATGATGATACCC 59.293 45.833 0.00 0.00 0.00 3.69
3495 5646 2.248248 TGACGGAGATGATGATACCCC 58.752 52.381 0.00 0.00 0.00 4.95
3496 5647 1.550976 GACGGAGATGATGATACCCCC 59.449 57.143 0.00 0.00 0.00 5.40
3504 5655 2.556766 TGATGATACCCCCACAAGTCA 58.443 47.619 0.00 0.00 0.00 3.41
3522 5673 1.454111 AGGATGAGACTCCGGACGG 60.454 63.158 0.00 3.96 40.46 4.79
3593 5744 6.109359 AGAGAAGGTGCAATGTTACTATCAC 58.891 40.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.138047 CTACCGCTTTCGCTGGTACG 61.138 60.000 0.00 0.00 41.18 3.67
1 2 0.804933 CCTACCGCTTTCGCTGGTAC 60.805 60.000 0.00 0.00 41.18 3.34
2 3 1.514087 CCTACCGCTTTCGCTGGTA 59.486 57.895 0.00 0.00 41.18 3.25
3 4 2.264794 CCTACCGCTTTCGCTGGT 59.735 61.111 0.00 0.00 42.64 4.00
4 5 2.311688 ATCCCTACCGCTTTCGCTGG 62.312 60.000 0.00 0.00 36.39 4.85
5 6 1.144057 ATCCCTACCGCTTTCGCTG 59.856 57.895 0.00 0.00 0.00 5.18
6 7 1.144057 CATCCCTACCGCTTTCGCT 59.856 57.895 0.00 0.00 0.00 4.93
7 8 1.887707 CCATCCCTACCGCTTTCGC 60.888 63.158 0.00 0.00 0.00 4.70
8 9 0.529992 GTCCATCCCTACCGCTTTCG 60.530 60.000 0.00 0.00 0.00 3.46
9 10 0.539986 TGTCCATCCCTACCGCTTTC 59.460 55.000 0.00 0.00 0.00 2.62
10 11 1.134098 CATGTCCATCCCTACCGCTTT 60.134 52.381 0.00 0.00 0.00 3.51
11 12 0.469917 CATGTCCATCCCTACCGCTT 59.530 55.000 0.00 0.00 0.00 4.68
12 13 1.410850 CCATGTCCATCCCTACCGCT 61.411 60.000 0.00 0.00 0.00 5.52
13 14 1.071471 CCATGTCCATCCCTACCGC 59.929 63.158 0.00 0.00 0.00 5.68
14 15 1.071471 GCCATGTCCATCCCTACCG 59.929 63.158 0.00 0.00 0.00 4.02
15 16 1.456287 GGCCATGTCCATCCCTACC 59.544 63.158 0.00 0.00 0.00 3.18
16 17 1.071471 CGGCCATGTCCATCCCTAC 59.929 63.158 2.24 0.00 0.00 3.18
17 18 2.146724 CCGGCCATGTCCATCCCTA 61.147 63.158 2.24 0.00 0.00 3.53
18 19 3.492353 CCGGCCATGTCCATCCCT 61.492 66.667 2.24 0.00 0.00 4.20
20 21 4.195334 AGCCGGCCATGTCCATCC 62.195 66.667 26.15 0.00 0.00 3.51
21 22 2.592861 GAGCCGGCCATGTCCATC 60.593 66.667 26.15 7.69 0.00 3.51
22 23 4.195334 GGAGCCGGCCATGTCCAT 62.195 66.667 26.15 0.00 0.00 3.41
35 36 3.635268 CTTCAGCCCCAGGTGGAGC 62.635 68.421 0.00 0.00 40.16 4.70
36 37 2.673523 CTTCAGCCCCAGGTGGAG 59.326 66.667 0.00 0.00 40.64 3.86
37 38 2.935481 CCTTCAGCCCCAGGTGGA 60.935 66.667 0.00 0.00 41.96 4.02
38 39 4.052518 CCCTTCAGCCCCAGGTGG 62.053 72.222 0.00 0.00 41.96 4.61
39 40 3.260100 ACCCTTCAGCCCCAGGTG 61.260 66.667 0.00 0.00 43.07 4.00
40 41 3.260100 CACCCTTCAGCCCCAGGT 61.260 66.667 0.00 0.00 0.00 4.00
41 42 3.260100 ACACCCTTCAGCCCCAGG 61.260 66.667 0.00 0.00 0.00 4.45
42 43 2.352805 GACACCCTTCAGCCCCAG 59.647 66.667 0.00 0.00 0.00 4.45
43 44 3.256960 GGACACCCTTCAGCCCCA 61.257 66.667 0.00 0.00 0.00 4.96
44 45 2.840753 TTGGACACCCTTCAGCCCC 61.841 63.158 0.00 0.00 0.00 5.80
45 46 1.603739 GTTGGACACCCTTCAGCCC 60.604 63.158 0.00 0.00 0.00 5.19
46 47 0.251341 ATGTTGGACACCCTTCAGCC 60.251 55.000 0.00 0.00 0.00 4.85
47 48 1.168714 GATGTTGGACACCCTTCAGC 58.831 55.000 0.00 0.00 0.00 4.26
48 49 2.566833 TGATGTTGGACACCCTTCAG 57.433 50.000 0.00 0.00 0.00 3.02
49 50 3.843619 TCTATGATGTTGGACACCCTTCA 59.156 43.478 0.00 0.00 0.00 3.02
50 51 4.192317 GTCTATGATGTTGGACACCCTTC 58.808 47.826 0.00 0.00 0.00 3.46
51 52 3.054361 GGTCTATGATGTTGGACACCCTT 60.054 47.826 0.00 0.00 0.00 3.95
52 53 2.505819 GGTCTATGATGTTGGACACCCT 59.494 50.000 0.00 0.00 0.00 4.34
53 54 2.421529 GGGTCTATGATGTTGGACACCC 60.422 54.545 0.00 0.00 0.00 4.61
54 55 2.238646 TGGGTCTATGATGTTGGACACC 59.761 50.000 0.00 0.00 31.80 4.16
55 56 3.627395 TGGGTCTATGATGTTGGACAC 57.373 47.619 0.00 0.00 33.26 3.67
56 57 3.136443 GGATGGGTCTATGATGTTGGACA 59.864 47.826 0.00 0.00 0.00 4.02
57 58 3.744660 GGATGGGTCTATGATGTTGGAC 58.255 50.000 0.00 0.00 0.00 4.02
58 59 2.368548 CGGATGGGTCTATGATGTTGGA 59.631 50.000 0.00 0.00 0.00 3.53
59 60 2.771089 CGGATGGGTCTATGATGTTGG 58.229 52.381 0.00 0.00 0.00 3.77
60 61 2.146342 GCGGATGGGTCTATGATGTTG 58.854 52.381 0.00 0.00 0.00 3.33
61 62 1.072331 GGCGGATGGGTCTATGATGTT 59.928 52.381 0.00 0.00 0.00 2.71
62 63 0.687354 GGCGGATGGGTCTATGATGT 59.313 55.000 0.00 0.00 0.00 3.06
63 64 0.390340 CGGCGGATGGGTCTATGATG 60.390 60.000 0.00 0.00 0.00 3.07
64 65 0.832135 ACGGCGGATGGGTCTATGAT 60.832 55.000 13.24 0.00 0.00 2.45
65 66 1.046472 AACGGCGGATGGGTCTATGA 61.046 55.000 13.24 0.00 0.00 2.15
66 67 0.880278 CAACGGCGGATGGGTCTATG 60.880 60.000 13.24 0.00 0.00 2.23
67 68 1.445942 CAACGGCGGATGGGTCTAT 59.554 57.895 13.24 0.00 0.00 1.98
68 69 2.897207 CAACGGCGGATGGGTCTA 59.103 61.111 13.24 0.00 0.00 2.59
69 70 4.778143 GCAACGGCGGATGGGTCT 62.778 66.667 13.24 0.00 0.00 3.85
71 72 4.652131 TTGCAACGGCGGATGGGT 62.652 61.111 13.24 0.00 45.35 4.51
72 73 3.369400 TTTGCAACGGCGGATGGG 61.369 61.111 13.24 0.00 45.35 4.00
73 74 2.126502 GTTTGCAACGGCGGATGG 60.127 61.111 13.24 0.00 45.35 3.51
82 83 0.592247 CCTGCTGTCACGTTTGCAAC 60.592 55.000 0.00 0.00 34.90 4.17
83 84 1.029408 ACCTGCTGTCACGTTTGCAA 61.029 50.000 0.00 0.00 34.90 4.08
84 85 1.451207 ACCTGCTGTCACGTTTGCA 60.451 52.632 0.00 0.00 0.00 4.08
85 86 1.009675 CACCTGCTGTCACGTTTGC 60.010 57.895 0.00 0.00 0.00 3.68
86 87 0.732571 AACACCTGCTGTCACGTTTG 59.267 50.000 0.00 0.00 30.29 2.93
87 88 1.132262 CAAACACCTGCTGTCACGTTT 59.868 47.619 0.00 0.00 30.29 3.60
88 89 0.732571 CAAACACCTGCTGTCACGTT 59.267 50.000 0.00 0.00 30.29 3.99
89 90 1.714899 GCAAACACCTGCTGTCACGT 61.715 55.000 0.00 0.00 39.34 4.49
90 91 1.009675 GCAAACACCTGCTGTCACG 60.010 57.895 0.00 0.00 39.34 4.35
91 92 0.670162 ATGCAAACACCTGCTGTCAC 59.330 50.000 0.00 0.00 43.07 3.67
92 93 0.669619 CATGCAAACACCTGCTGTCA 59.330 50.000 0.00 0.00 43.07 3.58
93 94 0.038892 CCATGCAAACACCTGCTGTC 60.039 55.000 0.00 0.00 43.07 3.51
94 95 2.043625 CCATGCAAACACCTGCTGT 58.956 52.632 0.00 0.00 43.07 4.40
95 96 1.373748 GCCATGCAAACACCTGCTG 60.374 57.895 0.00 0.00 43.07 4.41
96 97 1.532316 AGCCATGCAAACACCTGCT 60.532 52.632 0.00 0.00 43.07 4.24
97 98 1.373748 CAGCCATGCAAACACCTGC 60.374 57.895 0.00 0.00 42.95 4.85
98 99 1.290955 CCAGCCATGCAAACACCTG 59.709 57.895 0.00 0.00 0.00 4.00
99 100 1.909781 CCCAGCCATGCAAACACCT 60.910 57.895 0.00 0.00 0.00 4.00
100 101 1.907807 TCCCAGCCATGCAAACACC 60.908 57.895 0.00 0.00 0.00 4.16
101 102 1.290009 GTCCCAGCCATGCAAACAC 59.710 57.895 0.00 0.00 0.00 3.32
102 103 2.267351 CGTCCCAGCCATGCAAACA 61.267 57.895 0.00 0.00 0.00 2.83
103 104 2.568090 CGTCCCAGCCATGCAAAC 59.432 61.111 0.00 0.00 0.00 2.93
104 105 2.676121 CCGTCCCAGCCATGCAAA 60.676 61.111 0.00 0.00 0.00 3.68
105 106 3.645660 TCCGTCCCAGCCATGCAA 61.646 61.111 0.00 0.00 0.00 4.08
106 107 4.408821 GTCCGTCCCAGCCATGCA 62.409 66.667 0.00 0.00 0.00 3.96
107 108 3.918253 TTGTCCGTCCCAGCCATGC 62.918 63.158 0.00 0.00 0.00 4.06
108 109 1.746615 CTTGTCCGTCCCAGCCATG 60.747 63.158 0.00 0.00 0.00 3.66
109 110 2.185310 GACTTGTCCGTCCCAGCCAT 62.185 60.000 0.00 0.00 0.00 4.40
110 111 2.847234 ACTTGTCCGTCCCAGCCA 60.847 61.111 0.00 0.00 0.00 4.75
111 112 2.047179 GACTTGTCCGTCCCAGCC 60.047 66.667 0.00 0.00 0.00 4.85
112 113 2.047179 GGACTTGTCCGTCCCAGC 60.047 66.667 3.87 0.00 46.19 4.85
120 121 0.608640 AGGTGATGACGGACTTGTCC 59.391 55.000 9.62 9.62 38.11 4.02
121 122 1.673033 CCAGGTGATGACGGACTTGTC 60.673 57.143 0.00 0.00 39.37 3.18
122 123 0.321671 CCAGGTGATGACGGACTTGT 59.678 55.000 0.00 0.00 0.00 3.16
123 124 0.391661 CCCAGGTGATGACGGACTTG 60.392 60.000 0.00 0.00 0.00 3.16
124 125 1.553690 CCCCAGGTGATGACGGACTT 61.554 60.000 0.00 0.00 0.00 3.01
125 126 1.990060 CCCCAGGTGATGACGGACT 60.990 63.158 0.00 0.00 0.00 3.85
126 127 2.584608 CCCCAGGTGATGACGGAC 59.415 66.667 0.00 0.00 0.00 4.79
127 128 3.399181 GCCCCAGGTGATGACGGA 61.399 66.667 0.00 0.00 0.00 4.69
128 129 4.489771 GGCCCCAGGTGATGACGG 62.490 72.222 0.00 0.00 0.00 4.79
129 130 1.622607 TTAGGCCCCAGGTGATGACG 61.623 60.000 0.00 0.00 0.00 4.35
130 131 0.623723 TTTAGGCCCCAGGTGATGAC 59.376 55.000 0.00 0.00 0.00 3.06
131 132 1.377690 TTTTAGGCCCCAGGTGATGA 58.622 50.000 0.00 0.00 0.00 2.92
132 133 2.310538 GATTTTAGGCCCCAGGTGATG 58.689 52.381 0.00 0.00 0.00 3.07
133 134 1.929494 TGATTTTAGGCCCCAGGTGAT 59.071 47.619 0.00 0.00 0.00 3.06
134 135 1.284785 CTGATTTTAGGCCCCAGGTGA 59.715 52.381 0.00 0.00 0.00 4.02
135 136 1.767759 CTGATTTTAGGCCCCAGGTG 58.232 55.000 0.00 0.00 0.00 4.00
136 137 0.033109 GCTGATTTTAGGCCCCAGGT 60.033 55.000 0.00 0.00 0.00 4.00
137 138 0.756815 GGCTGATTTTAGGCCCCAGG 60.757 60.000 0.00 0.00 39.96 4.45
138 139 0.033208 TGGCTGATTTTAGGCCCCAG 60.033 55.000 0.00 0.00 44.71 4.45
139 140 0.324275 GTGGCTGATTTTAGGCCCCA 60.324 55.000 0.00 0.00 44.71 4.96
140 141 0.033109 AGTGGCTGATTTTAGGCCCC 60.033 55.000 0.00 0.00 44.71 5.80
141 142 1.106285 CAGTGGCTGATTTTAGGCCC 58.894 55.000 0.00 0.00 44.71 5.80
142 143 1.106285 CCAGTGGCTGATTTTAGGCC 58.894 55.000 0.00 0.00 45.45 5.19
143 144 1.474077 CACCAGTGGCTGATTTTAGGC 59.526 52.381 9.78 0.00 43.03 3.93
144 145 2.795329 ACACCAGTGGCTGATTTTAGG 58.205 47.619 9.78 0.00 32.44 2.69
145 146 4.201950 GCATACACCAGTGGCTGATTTTAG 60.202 45.833 9.78 0.00 32.44 1.85
146 147 3.694072 GCATACACCAGTGGCTGATTTTA 59.306 43.478 9.78 0.00 32.44 1.52
147 148 2.493278 GCATACACCAGTGGCTGATTTT 59.507 45.455 9.78 0.00 32.44 1.82
148 149 2.094675 GCATACACCAGTGGCTGATTT 58.905 47.619 9.78 0.00 32.44 2.17
149 150 1.004628 TGCATACACCAGTGGCTGATT 59.995 47.619 9.78 0.00 32.44 2.57
150 151 0.620030 TGCATACACCAGTGGCTGAT 59.380 50.000 9.78 0.00 32.44 2.90
151 152 0.620030 ATGCATACACCAGTGGCTGA 59.380 50.000 9.78 0.00 32.44 4.26
152 153 0.736636 CATGCATACACCAGTGGCTG 59.263 55.000 9.78 9.55 32.59 4.85
153 154 1.033746 GCATGCATACACCAGTGGCT 61.034 55.000 14.21 0.00 32.59 4.75
154 155 1.314534 TGCATGCATACACCAGTGGC 61.315 55.000 18.46 0.00 34.19 5.01
155 156 1.066454 CATGCATGCATACACCAGTGG 59.934 52.381 31.73 13.15 34.91 4.00
156 157 1.066454 CCATGCATGCATACACCAGTG 59.934 52.381 31.73 18.47 34.91 3.66
157 158 1.341285 ACCATGCATGCATACACCAGT 60.341 47.619 31.73 18.35 34.91 4.00
158 159 1.395635 ACCATGCATGCATACACCAG 58.604 50.000 31.73 18.22 34.91 4.00
159 160 1.477295 CAACCATGCATGCATACACCA 59.523 47.619 31.73 3.08 34.91 4.17
160 161 2.212869 CAACCATGCATGCATACACC 57.787 50.000 31.73 0.00 34.91 4.16
172 173 0.392863 TCCTCGGATGTGCAACCATG 60.393 55.000 0.00 0.00 34.36 3.66
173 174 0.548031 ATCCTCGGATGTGCAACCAT 59.452 50.000 0.00 0.00 34.36 3.55
174 175 0.392863 CATCCTCGGATGTGCAACCA 60.393 55.000 16.12 0.00 44.93 3.67
175 176 2.397751 CATCCTCGGATGTGCAACC 58.602 57.895 16.12 0.00 44.93 3.77
183 184 0.393077 CTAAACGGCCATCCTCGGAT 59.607 55.000 2.24 0.00 34.81 4.18
184 185 1.820581 CTAAACGGCCATCCTCGGA 59.179 57.895 2.24 0.00 0.00 4.55
185 186 1.887707 GCTAAACGGCCATCCTCGG 60.888 63.158 2.24 0.00 0.00 4.63
186 187 1.153449 TGCTAAACGGCCATCCTCG 60.153 57.895 2.24 0.00 0.00 4.63
187 188 1.095807 GGTGCTAAACGGCCATCCTC 61.096 60.000 2.24 0.00 0.00 3.71
188 189 1.077716 GGTGCTAAACGGCCATCCT 60.078 57.895 2.24 0.00 0.00 3.24
189 190 0.751643 ATGGTGCTAAACGGCCATCC 60.752 55.000 2.24 0.00 37.13 3.51
190 191 0.381801 CATGGTGCTAAACGGCCATC 59.618 55.000 2.24 0.00 39.47 3.51
191 192 1.666209 GCATGGTGCTAAACGGCCAT 61.666 55.000 2.24 0.00 40.96 4.40
192 193 2.339556 GCATGGTGCTAAACGGCCA 61.340 57.895 2.24 0.00 40.96 5.36
193 194 2.489751 GCATGGTGCTAAACGGCC 59.510 61.111 0.00 0.00 40.96 6.13
194 195 2.489751 GGCATGGTGCTAAACGGC 59.510 61.111 1.64 0.00 44.28 5.68
195 196 1.037030 ATGGGCATGGTGCTAAACGG 61.037 55.000 1.64 0.00 44.28 4.44
196 197 0.381801 GATGGGCATGGTGCTAAACG 59.618 55.000 1.64 0.00 44.28 3.60
197 198 0.746659 GGATGGGCATGGTGCTAAAC 59.253 55.000 1.64 0.00 44.28 2.01
198 199 0.630673 AGGATGGGCATGGTGCTAAA 59.369 50.000 1.64 0.00 44.28 1.85
199 200 0.106569 CAGGATGGGCATGGTGCTAA 60.107 55.000 1.64 0.00 44.28 3.09
200 201 1.281199 ACAGGATGGGCATGGTGCTA 61.281 55.000 1.64 0.00 43.62 3.49
201 202 2.277737 CAGGATGGGCATGGTGCT 59.722 61.111 1.64 0.00 44.28 4.40
202 203 2.043652 ACAGGATGGGCATGGTGC 60.044 61.111 0.00 0.00 43.62 5.01
203 204 3.929002 CACAGGATGGGCATGGTG 58.071 61.111 0.00 0.00 43.62 4.17
222 223 2.428171 GGGAGTACAAACATGCATGCAT 59.572 45.455 27.46 27.46 37.08 3.96
223 224 1.818060 GGGAGTACAAACATGCATGCA 59.182 47.619 26.53 25.04 0.00 3.96
224 225 1.202177 CGGGAGTACAAACATGCATGC 60.202 52.381 26.53 11.82 0.00 4.06
225 226 2.355197 TCGGGAGTACAAACATGCATG 58.645 47.619 25.09 25.09 0.00 4.06
226 227 2.779755 TCGGGAGTACAAACATGCAT 57.220 45.000 0.00 0.00 0.00 3.96
227 228 2.422597 CTTCGGGAGTACAAACATGCA 58.577 47.619 0.00 0.00 0.00 3.96
228 229 1.130561 GCTTCGGGAGTACAAACATGC 59.869 52.381 0.00 0.00 0.00 4.06
229 230 1.737793 GGCTTCGGGAGTACAAACATG 59.262 52.381 0.00 0.00 0.00 3.21
230 231 1.674817 CGGCTTCGGGAGTACAAACAT 60.675 52.381 0.00 0.00 0.00 2.71
231 232 0.320073 CGGCTTCGGGAGTACAAACA 60.320 55.000 0.00 0.00 0.00 2.83
232 233 2.452767 CGGCTTCGGGAGTACAAAC 58.547 57.895 0.00 0.00 0.00 2.93
243 244 3.804193 GCTCAAAGGCCGGCTTCG 61.804 66.667 28.56 14.18 0.00 3.79
244 245 1.973812 AAGCTCAAAGGCCGGCTTC 60.974 57.895 28.56 11.04 40.40 3.86
245 246 1.973812 GAAGCTCAAAGGCCGGCTT 60.974 57.895 28.56 18.19 45.91 4.35
246 247 2.360475 GAAGCTCAAAGGCCGGCT 60.360 61.111 28.56 9.77 36.53 5.52
247 248 2.672996 TGAAGCTCAAAGGCCGGC 60.673 61.111 21.18 21.18 0.00 6.13
248 249 2.680913 CGTGAAGCTCAAAGGCCGG 61.681 63.158 0.00 0.00 0.00 6.13
249 250 2.863153 CGTGAAGCTCAAAGGCCG 59.137 61.111 0.00 0.00 0.00 6.13
250 251 2.563427 GCGTGAAGCTCAAAGGCC 59.437 61.111 0.00 0.00 44.04 5.19
260 261 0.676466 TACATTGGCTGGGCGTGAAG 60.676 55.000 6.41 0.00 0.00 3.02
261 262 0.034574 ATACATTGGCTGGGCGTGAA 60.035 50.000 6.41 0.00 0.00 3.18
262 263 0.747644 CATACATTGGCTGGGCGTGA 60.748 55.000 6.41 0.00 0.00 4.35
263 264 1.729276 CATACATTGGCTGGGCGTG 59.271 57.895 0.00 0.00 0.00 5.34
264 265 2.120909 GCATACATTGGCTGGGCGT 61.121 57.895 0.00 0.00 0.00 5.68
265 266 1.386525 AAGCATACATTGGCTGGGCG 61.387 55.000 0.00 0.00 40.93 6.13
266 267 0.103572 CAAGCATACATTGGCTGGGC 59.896 55.000 0.00 0.00 40.93 5.36
267 268 0.103572 GCAAGCATACATTGGCTGGG 59.896 55.000 0.00 0.00 40.93 4.45
268 269 0.818938 TGCAAGCATACATTGGCTGG 59.181 50.000 0.00 0.00 40.93 4.85
269 270 2.536365 CTTGCAAGCATACATTGGCTG 58.464 47.619 14.65 0.00 40.93 4.85
270 271 1.479323 CCTTGCAAGCATACATTGGCT 59.521 47.619 21.43 0.00 43.46 4.75
271 272 1.930567 CCTTGCAAGCATACATTGGC 58.069 50.000 21.43 0.00 0.00 4.52
272 273 1.479323 AGCCTTGCAAGCATACATTGG 59.521 47.619 21.43 6.07 0.00 3.16
273 274 2.094390 ACAGCCTTGCAAGCATACATTG 60.094 45.455 21.43 11.86 0.00 2.82
274 275 2.094390 CACAGCCTTGCAAGCATACATT 60.094 45.455 21.43 0.00 0.00 2.71
275 276 1.475280 CACAGCCTTGCAAGCATACAT 59.525 47.619 21.43 0.77 0.00 2.29
276 277 0.883153 CACAGCCTTGCAAGCATACA 59.117 50.000 21.43 0.00 0.00 2.29
277 278 1.167851 TCACAGCCTTGCAAGCATAC 58.832 50.000 21.43 9.62 0.00 2.39
278 279 1.814394 CTTCACAGCCTTGCAAGCATA 59.186 47.619 21.43 0.00 0.00 3.14
279 280 0.601558 CTTCACAGCCTTGCAAGCAT 59.398 50.000 21.43 8.37 0.00 3.79
280 281 2.035421 CTTCACAGCCTTGCAAGCA 58.965 52.632 21.43 0.00 0.00 3.91
281 282 1.372623 GCTTCACAGCCTTGCAAGC 60.373 57.895 21.43 15.79 40.61 4.01
282 283 4.959446 GCTTCACAGCCTTGCAAG 57.041 55.556 19.93 19.93 40.61 4.01
290 291 2.032681 AAGGACCGGCTTCACAGC 59.967 61.111 0.00 0.00 46.52 4.40
291 292 0.671781 CTGAAGGACCGGCTTCACAG 60.672 60.000 17.52 11.14 35.91 3.66
292 293 1.371183 CTGAAGGACCGGCTTCACA 59.629 57.895 17.52 5.88 35.91 3.58
293 294 0.606604 TACTGAAGGACCGGCTTCAC 59.393 55.000 17.52 1.61 35.91 3.18
294 295 0.606604 GTACTGAAGGACCGGCTTCA 59.393 55.000 19.50 19.50 37.88 3.02
295 296 0.108281 GGTACTGAAGGACCGGCTTC 60.108 60.000 13.26 13.26 0.00 3.86
296 297 0.834687 TGGTACTGAAGGACCGGCTT 60.835 55.000 0.00 0.00 38.69 4.35
297 298 1.229082 TGGTACTGAAGGACCGGCT 60.229 57.895 0.00 0.00 38.69 5.52
298 299 1.079336 GTGGTACTGAAGGACCGGC 60.079 63.158 0.00 0.00 38.69 6.13
299 300 1.214589 CGTGGTACTGAAGGACCGG 59.785 63.158 7.22 0.00 38.69 5.28
300 301 1.445582 GCGTGGTACTGAAGGACCG 60.446 63.158 7.22 0.00 38.69 4.79
301 302 1.079336 GGCGTGGTACTGAAGGACC 60.079 63.158 4.61 4.61 36.17 4.46
302 303 1.079336 GGGCGTGGTACTGAAGGAC 60.079 63.158 0.00 0.00 0.00 3.85
303 304 1.534476 TGGGCGTGGTACTGAAGGA 60.534 57.895 0.00 0.00 0.00 3.36
304 305 1.079127 CTGGGCGTGGTACTGAAGG 60.079 63.158 0.00 0.00 0.00 3.46
305 306 1.741770 GCTGGGCGTGGTACTGAAG 60.742 63.158 0.00 0.00 0.00 3.02
306 307 2.345991 GCTGGGCGTGGTACTGAA 59.654 61.111 0.00 0.00 0.00 3.02
307 308 3.702048 GGCTGGGCGTGGTACTGA 61.702 66.667 0.00 0.00 0.00 3.41
319 320 2.357593 ATTTATCTGGCCCCGGCTGG 62.358 60.000 3.88 3.88 41.60 4.85
320 321 0.468029 AATTTATCTGGCCCCGGCTG 60.468 55.000 0.00 0.00 41.60 4.85
321 322 0.261696 AAATTTATCTGGCCCCGGCT 59.738 50.000 0.00 0.00 41.60 5.52
322 323 0.389025 CAAATTTATCTGGCCCCGGC 59.611 55.000 0.00 0.00 41.06 6.13
323 324 1.681264 GTCAAATTTATCTGGCCCCGG 59.319 52.381 0.00 0.00 0.00 5.73
324 325 2.654863 AGTCAAATTTATCTGGCCCCG 58.345 47.619 0.00 0.00 0.00 5.73
325 326 4.466015 TCAAAGTCAAATTTATCTGGCCCC 59.534 41.667 0.00 0.00 0.00 5.80
326 327 5.659440 TCAAAGTCAAATTTATCTGGCCC 57.341 39.130 0.00 0.00 0.00 5.80
327 328 8.552083 AATTTCAAAGTCAAATTTATCTGGCC 57.448 30.769 0.00 0.00 30.74 5.36
328 329 9.815936 CAAATTTCAAAGTCAAATTTATCTGGC 57.184 29.630 3.47 0.00 40.07 4.85
433 451 0.756294 CGCCATGGTACCACTCCATA 59.244 55.000 19.09 0.00 42.92 2.74
434 452 1.271840 ACGCCATGGTACCACTCCAT 61.272 55.000 19.09 0.00 45.29 3.41
435 453 1.485294 AACGCCATGGTACCACTCCA 61.485 55.000 19.09 0.00 39.41 3.86
436 454 0.322187 AAACGCCATGGTACCACTCC 60.322 55.000 19.09 7.09 0.00 3.85
437 455 1.084289 GAAACGCCATGGTACCACTC 58.916 55.000 19.09 8.26 0.00 3.51
438 456 0.322187 GGAAACGCCATGGTACCACT 60.322 55.000 19.09 3.70 36.34 4.00
439 457 0.322187 AGGAAACGCCATGGTACCAC 60.322 55.000 19.09 3.50 40.02 4.16
440 458 0.035820 GAGGAAACGCCATGGTACCA 60.036 55.000 18.99 18.99 40.02 3.25
441 459 1.087771 CGAGGAAACGCCATGGTACC 61.088 60.000 14.67 4.43 40.02 3.34
442 460 0.390735 ACGAGGAAACGCCATGGTAC 60.391 55.000 14.67 0.00 40.02 3.34
443 461 0.390603 CACGAGGAAACGCCATGGTA 60.391 55.000 14.67 0.00 40.02 3.25
444 462 1.671054 CACGAGGAAACGCCATGGT 60.671 57.895 14.67 0.00 40.02 3.55
445 463 3.039202 GCACGAGGAAACGCCATGG 62.039 63.158 7.63 7.63 40.02 3.66
446 464 2.034879 AGCACGAGGAAACGCCATG 61.035 57.895 0.00 0.00 40.02 3.66
447 465 2.034879 CAGCACGAGGAAACGCCAT 61.035 57.895 0.00 0.00 40.02 4.40
448 466 2.664851 CAGCACGAGGAAACGCCA 60.665 61.111 0.00 0.00 40.02 5.69
449 467 4.090057 GCAGCACGAGGAAACGCC 62.090 66.667 0.00 0.00 36.70 5.68
459 477 3.406361 GTCCAGTGTCGCAGCACG 61.406 66.667 0.00 0.00 43.61 5.34
460 478 3.044305 GGTCCAGTGTCGCAGCAC 61.044 66.667 0.00 0.00 39.51 4.40
461 479 3.233980 AGGTCCAGTGTCGCAGCA 61.234 61.111 0.00 0.00 0.00 4.41
462 480 2.740055 CAGGTCCAGTGTCGCAGC 60.740 66.667 0.00 0.00 0.00 5.25
463 481 1.892819 ATCCAGGTCCAGTGTCGCAG 61.893 60.000 0.00 0.00 0.00 5.18
464 482 1.913262 ATCCAGGTCCAGTGTCGCA 60.913 57.895 0.00 0.00 0.00 5.10
465 483 1.448540 CATCCAGGTCCAGTGTCGC 60.449 63.158 0.00 0.00 0.00 5.19
466 484 1.448540 GCATCCAGGTCCAGTGTCG 60.449 63.158 0.00 0.00 0.00 4.35
467 485 0.392193 CAGCATCCAGGTCCAGTGTC 60.392 60.000 0.00 0.00 0.00 3.67
468 486 1.681666 CAGCATCCAGGTCCAGTGT 59.318 57.895 0.00 0.00 0.00 3.55
469 487 1.077930 CCAGCATCCAGGTCCAGTG 60.078 63.158 0.00 0.00 0.00 3.66
470 488 0.622738 ATCCAGCATCCAGGTCCAGT 60.623 55.000 0.00 0.00 0.00 4.00
471 489 0.179026 CATCCAGCATCCAGGTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
472 490 0.621280 TCATCCAGCATCCAGGTCCA 60.621 55.000 0.00 0.00 0.00 4.02
473 491 0.108207 CTCATCCAGCATCCAGGTCC 59.892 60.000 0.00 0.00 0.00 4.46
474 492 0.108207 CCTCATCCAGCATCCAGGTC 59.892 60.000 0.00 0.00 0.00 3.85
475 493 0.622738 ACCTCATCCAGCATCCAGGT 60.623 55.000 0.00 0.00 0.00 4.00
476 494 1.347050 CTACCTCATCCAGCATCCAGG 59.653 57.143 0.00 0.00 0.00 4.45
477 495 2.299582 CTCTACCTCATCCAGCATCCAG 59.700 54.545 0.00 0.00 0.00 3.86
478 496 2.091111 TCTCTACCTCATCCAGCATCCA 60.091 50.000 0.00 0.00 0.00 3.41
479 497 2.603021 TCTCTACCTCATCCAGCATCC 58.397 52.381 0.00 0.00 0.00 3.51
480 498 5.655974 TGATATCTCTACCTCATCCAGCATC 59.344 44.000 3.98 0.00 0.00 3.91
481 499 5.587861 TGATATCTCTACCTCATCCAGCAT 58.412 41.667 3.98 0.00 0.00 3.79
482 500 5.003096 TGATATCTCTACCTCATCCAGCA 57.997 43.478 3.98 0.00 0.00 4.41
483 501 5.221028 CGATGATATCTCTACCTCATCCAGC 60.221 48.000 3.98 0.00 40.44 4.85
484 502 5.221028 GCGATGATATCTCTACCTCATCCAG 60.221 48.000 3.98 0.00 40.44 3.86
513 531 2.171448 CTCCTTCCCGTCATCCATCTTT 59.829 50.000 0.00 0.00 0.00 2.52
555 576 1.136891 CATCTACATGCCACGGTCTCA 59.863 52.381 0.00 0.00 0.00 3.27
561 582 0.589708 CATGCCATCTACATGCCACG 59.410 55.000 0.00 0.00 38.58 4.94
563 584 0.824595 GCCATGCCATCTACATGCCA 60.825 55.000 0.00 0.00 42.89 4.92
567 588 4.377762 AAGTATGCCATGCCATCTACAT 57.622 40.909 0.00 0.00 0.00 2.29
573 594 3.074985 ACCAGATAAGTATGCCATGCCAT 59.925 43.478 0.00 0.00 0.00 4.40
574 595 2.442878 ACCAGATAAGTATGCCATGCCA 59.557 45.455 0.00 0.00 0.00 4.92
575 596 2.816087 CACCAGATAAGTATGCCATGCC 59.184 50.000 0.00 0.00 0.00 4.40
576 597 3.251729 CACACCAGATAAGTATGCCATGC 59.748 47.826 0.00 0.00 0.00 4.06
577 598 4.454678 ACACACCAGATAAGTATGCCATG 58.545 43.478 0.00 0.00 0.00 3.66
583 604 6.779860 ACAAGGAAACACACCAGATAAGTAT 58.220 36.000 0.00 0.00 0.00 2.12
585 606 5.048846 ACAAGGAAACACACCAGATAAGT 57.951 39.130 0.00 0.00 0.00 2.24
586 607 7.687941 AATACAAGGAAACACACCAGATAAG 57.312 36.000 0.00 0.00 0.00 1.73
587 608 8.472007 AAAATACAAGGAAACACACCAGATAA 57.528 30.769 0.00 0.00 0.00 1.75
588 609 8.356657 CAAAAATACAAGGAAACACACCAGATA 58.643 33.333 0.00 0.00 0.00 1.98
589 610 6.976934 AAAATACAAGGAAACACACCAGAT 57.023 33.333 0.00 0.00 0.00 2.90
618 686 5.655532 GGTGTATGTCTAACTCCTCCAAGTA 59.344 44.000 0.00 0.00 0.00 2.24
673 744 0.321387 TCTCTCTGCTTGCCTGCTTG 60.321 55.000 0.00 0.00 0.00 4.01
675 746 1.597989 CTCTCTCTGCTTGCCTGCT 59.402 57.895 0.00 0.00 0.00 4.24
677 748 1.020333 GTGCTCTCTCTGCTTGCCTG 61.020 60.000 0.00 0.00 0.00 4.85
711 783 0.951558 GTGCTCTCTTTCCCGCAAAA 59.048 50.000 0.00 0.00 33.74 2.44
713 785 0.603707 CTGTGCTCTCTTTCCCGCAA 60.604 55.000 0.00 0.00 33.74 4.85
714 786 1.004560 CTGTGCTCTCTTTCCCGCA 60.005 57.895 0.00 0.00 0.00 5.69
715 787 0.246635 TACTGTGCTCTCTTTCCCGC 59.753 55.000 0.00 0.00 0.00 6.13
716 788 1.732732 CGTACTGTGCTCTCTTTCCCG 60.733 57.143 0.00 0.00 0.00 5.14
717 789 1.272769 ACGTACTGTGCTCTCTTTCCC 59.727 52.381 0.00 0.00 0.00 3.97
718 790 2.726832 ACGTACTGTGCTCTCTTTCC 57.273 50.000 0.00 0.00 0.00 3.13
719 791 5.405331 AAAAACGTACTGTGCTCTCTTTC 57.595 39.130 0.00 0.00 0.00 2.62
749 821 0.670162 GTGCTCTCTGCCTGCAAAAA 59.330 50.000 0.00 0.00 42.00 1.94
750 822 0.466007 TGTGCTCTCTGCCTGCAAAA 60.466 50.000 0.00 0.00 42.00 2.44
751 823 0.887836 CTGTGCTCTCTGCCTGCAAA 60.888 55.000 0.00 0.00 42.00 3.68
752 824 1.302271 CTGTGCTCTCTGCCTGCAA 60.302 57.895 0.00 0.00 42.00 4.08
753 825 1.187567 TACTGTGCTCTCTGCCTGCA 61.188 55.000 0.00 0.00 42.00 4.41
754 826 0.739112 GTACTGTGCTCTCTGCCTGC 60.739 60.000 0.00 0.00 42.00 4.85
755 827 0.457509 CGTACTGTGCTCTCTGCCTG 60.458 60.000 0.00 0.00 42.00 4.85
756 828 0.896019 ACGTACTGTGCTCTCTGCCT 60.896 55.000 0.00 0.00 42.00 4.75
757 829 0.809385 TACGTACTGTGCTCTCTGCC 59.191 55.000 0.00 0.00 42.00 4.85
758 830 1.199327 TGTACGTACTGTGCTCTCTGC 59.801 52.381 25.12 0.00 43.25 4.26
759 831 2.225727 TGTGTACGTACTGTGCTCTCTG 59.774 50.000 25.12 0.00 33.83 3.35
760 832 2.484651 CTGTGTACGTACTGTGCTCTCT 59.515 50.000 25.12 0.00 33.83 3.10
761 833 2.225963 ACTGTGTACGTACTGTGCTCTC 59.774 50.000 25.12 7.31 33.83 3.20
762 834 2.225963 GACTGTGTACGTACTGTGCTCT 59.774 50.000 25.12 2.87 33.63 4.09
763 835 2.225963 AGACTGTGTACGTACTGTGCTC 59.774 50.000 25.12 13.22 33.63 4.26
764 836 2.228059 AGACTGTGTACGTACTGTGCT 58.772 47.619 25.12 13.38 33.63 4.40
765 837 2.701073 AGACTGTGTACGTACTGTGC 57.299 50.000 25.12 13.45 33.63 4.57
766 838 3.961182 ACAAGACTGTGTACGTACTGTG 58.039 45.455 25.12 16.40 33.30 3.66
767 839 5.240183 ACATACAAGACTGTGTACGTACTGT 59.760 40.000 25.12 19.91 36.83 3.55
768 840 5.696822 ACATACAAGACTGTGTACGTACTG 58.303 41.667 25.12 15.59 36.83 2.74
769 841 5.954296 ACATACAAGACTGTGTACGTACT 57.046 39.130 25.12 6.08 36.83 2.73
882 963 1.067060 CGGTCCTGATACGATTCTGCA 59.933 52.381 0.00 0.00 0.00 4.41
1043 1182 2.930040 CGTAGTAGGCAGTTCATGGTTG 59.070 50.000 0.00 0.00 0.00 3.77
1226 1380 3.129502 CCTCGCGGTCGTAGTGGA 61.130 66.667 6.13 0.00 36.96 4.02
1522 1677 1.877637 TTGTGGTCGTGGTCATTGAG 58.122 50.000 0.00 0.00 0.00 3.02
1527 1682 0.250684 ATGCATTGTGGTCGTGGTCA 60.251 50.000 0.00 0.00 0.00 4.02
1666 1821 9.773328 CCACACACACATAAAAATCATTACTAG 57.227 33.333 0.00 0.00 0.00 2.57
1669 1825 9.638239 AATCCACACACACATAAAAATCATTAC 57.362 29.630 0.00 0.00 0.00 1.89
1676 1832 4.895889 TGGGAATCCACACACACATAAAAA 59.104 37.500 0.09 0.00 38.32 1.94
1682 1838 0.843309 ACTGGGAATCCACACACACA 59.157 50.000 0.09 0.00 38.32 3.72
1683 1839 1.238439 CACTGGGAATCCACACACAC 58.762 55.000 0.09 0.00 38.32 3.82
1751 1935 5.964958 ACGATGTGACCAATCTGAAAAAT 57.035 34.783 0.00 0.00 0.00 1.82
1800 1985 1.070786 GTTGGAGACCACTTGGCGA 59.929 57.895 0.00 0.00 39.32 5.54
1937 2991 2.186076 GTTCGACCGAGCTAAGATGTG 58.814 52.381 0.00 0.00 0.00 3.21
1957 3042 1.146263 GTAGCCCAGGGTCCAATCG 59.854 63.158 7.55 0.00 0.00 3.34
2004 3089 0.517316 GAGTTCCATGTTGTCGTGGC 59.483 55.000 2.00 0.00 46.99 5.01
2161 3251 0.979709 TGCCTCCATCTCTGACCTGG 60.980 60.000 0.00 0.00 0.00 4.45
2247 3337 5.072055 TCTTTCAATCATTGCAGACTTCCA 58.928 37.500 0.00 0.00 0.00 3.53
2253 3343 3.076621 ACGCTCTTTCAATCATTGCAGA 58.923 40.909 0.00 0.00 0.00 4.26
2255 3345 2.162208 GGACGCTCTTTCAATCATTGCA 59.838 45.455 0.00 0.00 0.00 4.08
2390 3480 2.343758 GAGCTGGTGCCTTCGTCA 59.656 61.111 0.00 0.00 40.80 4.35
2500 3590 5.954150 ACTTGGGCATTCTAATCTGTTCATT 59.046 36.000 0.00 0.00 0.00 2.57
2832 3928 0.752658 GGCACAAACAAAGGGAAGCT 59.247 50.000 0.00 0.00 0.00 3.74
2913 4009 4.987912 CACAGAGAGACCAGAGAAGAAAAC 59.012 45.833 0.00 0.00 0.00 2.43
2914 4010 4.651503 ACACAGAGAGACCAGAGAAGAAAA 59.348 41.667 0.00 0.00 0.00 2.29
2915 4011 4.219115 ACACAGAGAGACCAGAGAAGAAA 58.781 43.478 0.00 0.00 0.00 2.52
2916 4012 3.838565 ACACAGAGAGACCAGAGAAGAA 58.161 45.455 0.00 0.00 0.00 2.52
2917 4013 3.517296 ACACAGAGAGACCAGAGAAGA 57.483 47.619 0.00 0.00 0.00 2.87
2918 4014 4.599047 AAACACAGAGAGACCAGAGAAG 57.401 45.455 0.00 0.00 0.00 2.85
2919 4015 4.651503 AGAAAACACAGAGAGACCAGAGAA 59.348 41.667 0.00 0.00 0.00 2.87
2920 4016 4.219115 AGAAAACACAGAGAGACCAGAGA 58.781 43.478 0.00 0.00 0.00 3.10
2921 4017 4.599047 AGAAAACACAGAGAGACCAGAG 57.401 45.455 0.00 0.00 0.00 3.35
2922 4018 4.651503 AGAAGAAAACACAGAGAGACCAGA 59.348 41.667 0.00 0.00 0.00 3.86
2923 4019 4.954875 AGAAGAAAACACAGAGAGACCAG 58.045 43.478 0.00 0.00 0.00 4.00
2924 4020 4.651503 AGAGAAGAAAACACAGAGAGACCA 59.348 41.667 0.00 0.00 0.00 4.02
2925 4021 4.987912 CAGAGAAGAAAACACAGAGAGACC 59.012 45.833 0.00 0.00 0.00 3.85
2926 4022 4.987912 CCAGAGAAGAAAACACAGAGAGAC 59.012 45.833 0.00 0.00 0.00 3.36
2927 4023 4.502259 GCCAGAGAAGAAAACACAGAGAGA 60.502 45.833 0.00 0.00 0.00 3.10
2928 4024 3.745458 GCCAGAGAAGAAAACACAGAGAG 59.255 47.826 0.00 0.00 0.00 3.20
2929 4025 3.389329 AGCCAGAGAAGAAAACACAGAGA 59.611 43.478 0.00 0.00 0.00 3.10
2930 4026 3.737850 AGCCAGAGAAGAAAACACAGAG 58.262 45.455 0.00 0.00 0.00 3.35
2931 4027 3.495100 GGAGCCAGAGAAGAAAACACAGA 60.495 47.826 0.00 0.00 0.00 3.41
2932 4028 2.810852 GGAGCCAGAGAAGAAAACACAG 59.189 50.000 0.00 0.00 0.00 3.66
2933 4029 2.487265 GGGAGCCAGAGAAGAAAACACA 60.487 50.000 0.00 0.00 0.00 3.72
2934 4030 2.155279 GGGAGCCAGAGAAGAAAACAC 58.845 52.381 0.00 0.00 0.00 3.32
2935 4031 2.057922 AGGGAGCCAGAGAAGAAAACA 58.942 47.619 0.00 0.00 0.00 2.83
2936 4032 2.869101 AGGGAGCCAGAGAAGAAAAC 57.131 50.000 0.00 0.00 0.00 2.43
2937 4033 3.884037 AAAGGGAGCCAGAGAAGAAAA 57.116 42.857 0.00 0.00 0.00 2.29
2938 4034 3.117512 ACAAAAGGGAGCCAGAGAAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
2939 4035 2.443255 ACAAAAGGGAGCCAGAGAAGAA 59.557 45.455 0.00 0.00 0.00 2.52
2940 4036 2.057922 ACAAAAGGGAGCCAGAGAAGA 58.942 47.619 0.00 0.00 0.00 2.87
2941 4037 2.575805 ACAAAAGGGAGCCAGAGAAG 57.424 50.000 0.00 0.00 0.00 2.85
2942 4038 3.312736 AAACAAAAGGGAGCCAGAGAA 57.687 42.857 0.00 0.00 0.00 2.87
2943 4039 3.117512 AGAAAACAAAAGGGAGCCAGAGA 60.118 43.478 0.00 0.00 0.00 3.10
2944 4040 3.225940 AGAAAACAAAAGGGAGCCAGAG 58.774 45.455 0.00 0.00 0.00 3.35
2945 4041 3.222603 GAGAAAACAAAAGGGAGCCAGA 58.777 45.455 0.00 0.00 0.00 3.86
2946 4042 2.030805 CGAGAAAACAAAAGGGAGCCAG 60.031 50.000 0.00 0.00 0.00 4.85
2947 4043 1.953686 CGAGAAAACAAAAGGGAGCCA 59.046 47.619 0.00 0.00 0.00 4.75
2948 4044 1.954382 ACGAGAAAACAAAAGGGAGCC 59.046 47.619 0.00 0.00 0.00 4.70
2949 4045 2.031069 GGACGAGAAAACAAAAGGGAGC 60.031 50.000 0.00 0.00 0.00 4.70
2950 4046 3.211045 TGGACGAGAAAACAAAAGGGAG 58.789 45.455 0.00 0.00 0.00 4.30
2951 4047 3.284793 TGGACGAGAAAACAAAAGGGA 57.715 42.857 0.00 0.00 0.00 4.20
2952 4048 4.379339 TTTGGACGAGAAAACAAAAGGG 57.621 40.909 0.00 0.00 30.67 3.95
2953 4049 4.565166 GGTTTTGGACGAGAAAACAAAAGG 59.435 41.667 17.07 0.00 42.59 3.11
2954 4050 4.264380 CGGTTTTGGACGAGAAAACAAAAG 59.736 41.667 17.07 7.08 42.59 2.27
2955 4051 4.167268 CGGTTTTGGACGAGAAAACAAAA 58.833 39.130 17.07 0.00 42.59 2.44
2956 4052 3.190953 ACGGTTTTGGACGAGAAAACAAA 59.809 39.130 17.07 0.00 42.59 2.83
3005 4101 3.393800 CTCGATATTTCAGCCCAATCGT 58.606 45.455 0.00 0.00 40.15 3.73
3011 4107 1.056660 TCCCCTCGATATTTCAGCCC 58.943 55.000 0.00 0.00 0.00 5.19
3023 4119 5.683876 ATATCCAGATAAACATCCCCTCG 57.316 43.478 0.00 0.00 0.00 4.63
3038 4134 5.235186 CGACCACAAGAAAGCTAATATCCAG 59.765 44.000 0.00 0.00 0.00 3.86
3039 4135 5.105106 TCGACCACAAGAAAGCTAATATCCA 60.105 40.000 0.00 0.00 0.00 3.41
3107 4203 0.743688 AGAATCAGCGAGACGATGCT 59.256 50.000 4.56 0.00 43.19 3.79
3108 4204 1.565305 AAGAATCAGCGAGACGATGC 58.435 50.000 4.56 0.00 43.19 3.91
3167 4295 9.868277 AAGTCCAAATGCGATAAAAATTTATGA 57.132 25.926 3.25 0.00 33.72 2.15
3169 4297 9.868277 TGAAGTCCAAATGCGATAAAAATTTAT 57.132 25.926 0.00 0.00 36.14 1.40
3174 4302 7.869937 TCAAATGAAGTCCAAATGCGATAAAAA 59.130 29.630 0.00 0.00 0.00 1.94
3213 5349 7.295952 TGTTTGTTGCATATTTTTGTTTCGT 57.704 28.000 0.00 0.00 0.00 3.85
3248 5384 6.588204 ACTAACATATTAATTGAGTGCCCGA 58.412 36.000 0.00 0.00 0.00 5.14
3335 5471 9.847706 TGTGTGATACGCATAACATTTTTATTT 57.152 25.926 0.00 0.00 33.08 1.40
3391 5540 8.582657 ACAACTCAATACTACAGTATGACTCT 57.417 34.615 2.71 0.00 40.78 3.24
3438 5589 7.604164 ACTCGGACAATGCTCTAATAATTATGG 59.396 37.037 0.00 0.00 0.00 2.74
3461 5612 3.695060 TCTCCGTCATACTTTCCTCACTC 59.305 47.826 0.00 0.00 0.00 3.51
3478 5629 1.276421 GTGGGGGTATCATCATCTCCG 59.724 57.143 0.00 0.00 0.00 4.63
3484 5635 2.505407 CTGACTTGTGGGGGTATCATCA 59.495 50.000 0.00 0.00 0.00 3.07
3491 5642 0.475632 TCATCCTGACTTGTGGGGGT 60.476 55.000 0.00 0.00 0.00 4.95
3494 5645 1.905215 AGTCTCATCCTGACTTGTGGG 59.095 52.381 0.00 0.00 41.45 4.61
3495 5646 2.093764 GGAGTCTCATCCTGACTTGTGG 60.094 54.545 1.47 0.00 43.88 4.17
3496 5647 2.416566 CGGAGTCTCATCCTGACTTGTG 60.417 54.545 1.47 0.00 43.88 3.33
3504 5655 1.454111 CCGTCCGGAGTCTCATCCT 60.454 63.158 3.06 0.00 37.20 3.24
3558 5709 5.590530 TGCACCTTCTCTCTTTATCTCTC 57.409 43.478 0.00 0.00 0.00 3.20
3575 5726 6.072175 TGGAAAAGTGATAGTAACATTGCACC 60.072 38.462 0.00 0.00 0.00 5.01
3593 5744 3.781079 TGAAGCACAAGTGTGGAAAAG 57.219 42.857 13.10 0.00 45.72 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.