Multiple sequence alignment - TraesCS5B01G521500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G521500 chr5B 100.000 4204 0 0 2291 6494 683516916 683521119 0.000000e+00 7764.0
1 TraesCS5B01G521500 chr5B 100.000 2039 0 0 1 2039 683514626 683516664 0.000000e+00 3766.0
2 TraesCS5B01G521500 chr5B 83.133 166 17 7 1 155 683506676 683506841 2.440000e-29 141.0
3 TraesCS5B01G521500 chr5D 94.025 3297 136 17 2291 5541 541608337 541611618 0.000000e+00 4940.0
4 TraesCS5B01G521500 chr5D 82.007 867 67 45 462 1261 541607113 541607957 0.000000e+00 654.0
5 TraesCS5B01G521500 chr5D 91.136 361 21 5 6098 6453 541612222 541612576 4.550000e-131 479.0
6 TraesCS5B01G521500 chr5D 88.112 286 17 7 5594 5867 541611637 541611917 2.260000e-84 324.0
7 TraesCS5B01G521500 chr5D 89.804 255 19 5 1 251 541606649 541606900 2.920000e-83 320.0
8 TraesCS5B01G521500 chr5D 99.160 119 1 0 1918 2036 541608188 541608306 1.420000e-51 215.0
9 TraesCS5B01G521500 chr4A 93.196 3292 161 32 2291 5541 627519597 627516328 0.000000e+00 4780.0
10 TraesCS5B01G521500 chr4A 84.588 1408 90 55 688 2039 627520959 627519623 0.000000e+00 1280.0
11 TraesCS5B01G521500 chr4A 88.333 360 13 7 6142 6493 627515808 627515470 7.840000e-109 405.0
12 TraesCS5B01G521500 chr4A 89.170 277 16 7 5595 5867 627516309 627516043 3.750000e-87 333.0
13 TraesCS5B01G521500 chr4A 80.159 252 23 13 8 246 627521904 627521667 5.210000e-36 163.0
14 TraesCS5B01G521500 chr4A 83.432 169 16 7 1 157 627571986 627571818 5.250000e-31 147.0
15 TraesCS5B01G521500 chr4A 100.000 28 0 0 3793 3820 742155683 742155710 1.200000e-02 52.8
16 TraesCS5B01G521500 chr6B 84.201 1076 111 29 3833 4874 197772588 197771538 0.000000e+00 990.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G521500 chr5B 683514626 683521119 6493 False 5765.000000 7764 100.000000 1 6494 2 chr5B.!!$F2 6493
1 TraesCS5B01G521500 chr5D 541606649 541612576 5927 False 1155.333333 4940 90.707333 1 6453 6 chr5D.!!$F1 6452
2 TraesCS5B01G521500 chr4A 627515470 627521904 6434 True 1392.200000 4780 87.089200 8 6493 5 chr4A.!!$R2 6485
3 TraesCS5B01G521500 chr6B 197771538 197772588 1050 True 990.000000 990 84.201000 3833 4874 1 chr6B.!!$R1 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 1385 0.109153 TGACCGGATAGGCTACGCTA 59.891 55.0 9.46 0.0 46.52 4.26 F
2036 2581 0.107312 CTGGGCATCACCAAGAGGAG 60.107 60.0 0.00 0.0 43.15 3.69 F
2512 3061 0.526524 GAGAGTCGAATGCCCACTCG 60.527 60.0 0.00 0.0 41.32 4.18 F
2815 3379 0.674895 GCCAGAAAGATGTGGTCGCT 60.675 55.0 0.00 0.0 41.99 4.93 F
3505 4069 0.804364 TGCGTGGTGATTCAGAATGC 59.196 50.0 0.00 0.0 34.76 3.56 F
4854 5461 0.037326 TCGGAACAGTGACATGCTCC 60.037 55.0 0.00 0.0 32.99 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2815 3379 1.043116 CACCCTCGCCTGGTAGATCA 61.043 60.000 0.00 0.0 33.84 2.92 R
3442 4006 0.251165 AGGATTTGTTGTCCGGGTGG 60.251 55.000 0.00 0.0 40.76 4.61 R
3718 4282 0.883833 ATCGGCTTCCAGTTTTGCTG 59.116 50.000 0.00 0.0 44.63 4.41 R
4221 4790 1.672363 TCCATGAATCACAGAATGCGC 59.328 47.619 0.00 0.0 42.53 6.09 R
5177 5784 0.110486 ATGAGGACTGGCGGTGTTTT 59.890 50.000 2.25 0.0 0.00 2.43 R
6096 6819 0.108424 ACAGCTCGATCCACTTCTGC 60.108 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.316442 CACTATTTGCCAGCGATGCG 60.316 55.000 0.00 0.00 0.00 4.73
54 55 1.634757 TTTGCCAGCGATGCGTACTG 61.635 55.000 0.00 2.12 0.00 2.74
62 63 0.572590 CGATGCGTACTGTTGCTAGC 59.427 55.000 8.10 8.10 0.00 3.42
76 77 1.933247 GCTAGCACAGCCTAGTTCTG 58.067 55.000 10.63 7.47 45.23 3.02
108 118 1.990563 GCACGCTAGAAATACACACGT 59.009 47.619 0.00 0.00 0.00 4.49
157 168 3.323751 ACAAAGTTATTCCGGCGTACT 57.676 42.857 6.01 0.00 0.00 2.73
158 169 4.454728 ACAAAGTTATTCCGGCGTACTA 57.545 40.909 6.01 0.00 0.00 1.82
177 188 7.339732 GTACTAGTACGTACGTATGCTGTAT 57.660 40.000 29.05 14.58 31.48 2.29
179 190 9.077674 GTACTAGTACGTACGTATGCTGTATAT 57.922 37.037 29.05 11.68 31.48 0.86
181 192 9.295214 ACTAGTACGTACGTATGCTGTATATAG 57.705 37.037 29.05 16.90 32.82 1.31
182 193 9.508567 CTAGTACGTACGTATGCTGTATATAGA 57.491 37.037 29.05 2.44 32.82 1.98
183 194 8.179148 AGTACGTACGTATGCTGTATATAGAC 57.821 38.462 29.05 14.56 32.82 2.59
184 195 7.814587 AGTACGTACGTATGCTGTATATAGACA 59.185 37.037 29.05 0.00 32.82 3.41
185 196 8.106956 GTACGTACGTATGCTGTATATAGACAG 58.893 40.741 29.05 20.77 40.13 3.51
207 222 3.552294 GCATCTCTCTTTTACGTACCTGC 59.448 47.826 0.00 0.00 0.00 4.85
233 248 1.204312 GTGCGAGTGAAAAGCGGTC 59.796 57.895 0.00 0.00 0.00 4.79
240 255 1.824329 TGAAAAGCGGTCGGCCAAA 60.824 52.632 6.96 0.00 45.17 3.28
241 256 1.360911 GAAAAGCGGTCGGCCAAAA 59.639 52.632 6.96 0.00 45.17 2.44
242 257 0.937699 GAAAAGCGGTCGGCCAAAAC 60.938 55.000 6.96 0.00 45.17 2.43
243 258 2.671357 AAAAGCGGTCGGCCAAAACG 62.671 55.000 6.96 8.17 45.17 3.60
244 259 4.612412 AGCGGTCGGCCAAAACGA 62.612 61.111 16.23 0.00 45.17 3.85
245 260 4.084888 GCGGTCGGCCAAAACGAG 62.085 66.667 16.23 3.73 41.50 4.18
246 261 3.419759 CGGTCGGCCAAAACGAGG 61.420 66.667 6.96 0.00 41.50 4.63
247 262 2.031465 GGTCGGCCAAAACGAGGA 59.969 61.111 0.00 0.00 41.50 3.71
248 263 2.033194 GGTCGGCCAAAACGAGGAG 61.033 63.158 0.00 0.00 41.50 3.69
249 264 1.005394 GTCGGCCAAAACGAGGAGA 60.005 57.895 2.24 0.00 41.50 3.71
250 265 1.014564 GTCGGCCAAAACGAGGAGAG 61.015 60.000 2.24 0.00 41.50 3.20
251 266 1.741770 CGGCCAAAACGAGGAGAGG 60.742 63.158 2.24 0.00 0.00 3.69
252 267 1.377333 GGCCAAAACGAGGAGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
253 268 1.677552 GCCAAAACGAGGAGAGGGA 59.322 57.895 0.00 0.00 0.00 4.20
254 269 0.391793 GCCAAAACGAGGAGAGGGAG 60.392 60.000 0.00 0.00 0.00 4.30
255 270 1.267121 CCAAAACGAGGAGAGGGAGA 58.733 55.000 0.00 0.00 0.00 3.71
256 271 1.205893 CCAAAACGAGGAGAGGGAGAG 59.794 57.143 0.00 0.00 0.00 3.20
257 272 2.171840 CAAAACGAGGAGAGGGAGAGA 58.828 52.381 0.00 0.00 0.00 3.10
258 273 2.137810 AAACGAGGAGAGGGAGAGAG 57.862 55.000 0.00 0.00 0.00 3.20
259 274 1.291109 AACGAGGAGAGGGAGAGAGA 58.709 55.000 0.00 0.00 0.00 3.10
260 275 0.837272 ACGAGGAGAGGGAGAGAGAG 59.163 60.000 0.00 0.00 0.00 3.20
261 276 1.128200 CGAGGAGAGGGAGAGAGAGA 58.872 60.000 0.00 0.00 0.00 3.10
262 277 1.070758 CGAGGAGAGGGAGAGAGAGAG 59.929 61.905 0.00 0.00 0.00 3.20
263 278 2.408565 GAGGAGAGGGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
264 279 2.370189 GAGGAGAGGGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
265 280 2.022035 AGGAGAGGGAGAGAGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
266 281 2.370189 GGAGAGGGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
267 282 3.041946 GAGAGGGAGAGAGAGAGAGAGT 58.958 54.545 0.00 0.00 0.00 3.24
268 283 3.456277 GAGAGGGAGAGAGAGAGAGAGTT 59.544 52.174 0.00 0.00 0.00 3.01
269 284 4.631234 AGAGGGAGAGAGAGAGAGAGTTA 58.369 47.826 0.00 0.00 0.00 2.24
270 285 4.409247 AGAGGGAGAGAGAGAGAGAGTTAC 59.591 50.000 0.00 0.00 0.00 2.50
271 286 3.458487 AGGGAGAGAGAGAGAGAGTTACC 59.542 52.174 0.00 0.00 0.00 2.85
272 287 3.201266 GGGAGAGAGAGAGAGAGTTACCA 59.799 52.174 0.00 0.00 0.00 3.25
273 288 4.141251 GGGAGAGAGAGAGAGAGTTACCAT 60.141 50.000 0.00 0.00 0.00 3.55
274 289 4.821805 GGAGAGAGAGAGAGAGTTACCATG 59.178 50.000 0.00 0.00 0.00 3.66
275 290 4.207165 AGAGAGAGAGAGAGTTACCATGC 58.793 47.826 0.00 0.00 0.00 4.06
276 291 3.951037 GAGAGAGAGAGAGTTACCATGCA 59.049 47.826 0.00 0.00 0.00 3.96
277 292 4.348486 AGAGAGAGAGAGTTACCATGCAA 58.652 43.478 0.00 0.00 0.00 4.08
278 293 4.774726 AGAGAGAGAGAGTTACCATGCAAA 59.225 41.667 0.00 0.00 0.00 3.68
279 294 5.247110 AGAGAGAGAGAGTTACCATGCAAAA 59.753 40.000 0.00 0.00 0.00 2.44
280 295 5.869579 AGAGAGAGAGTTACCATGCAAAAA 58.130 37.500 0.00 0.00 0.00 1.94
324 339 6.866770 GTGTCTGCGCATTTACCTTATCTATA 59.133 38.462 12.24 0.00 0.00 1.31
326 341 7.091443 GTCTGCGCATTTACCTTATCTATACT 58.909 38.462 12.24 0.00 0.00 2.12
328 343 6.988522 TGCGCATTTACCTTATCTATACTCA 58.011 36.000 5.66 0.00 0.00 3.41
331 346 8.936864 GCGCATTTACCTTATCTATACTCATTT 58.063 33.333 0.30 0.00 0.00 2.32
384 556 1.106944 ACCAGTCGGCAAAAAGGGTG 61.107 55.000 0.00 0.00 34.57 4.61
385 557 1.106944 CCAGTCGGCAAAAAGGGTGT 61.107 55.000 0.00 0.00 0.00 4.16
386 558 0.744281 CAGTCGGCAAAAAGGGTGTT 59.256 50.000 0.00 0.00 0.00 3.32
387 559 1.029681 AGTCGGCAAAAAGGGTGTTC 58.970 50.000 0.00 0.00 0.00 3.18
388 560 0.317519 GTCGGCAAAAAGGGTGTTCG 60.318 55.000 0.00 0.00 0.00 3.95
389 561 0.748729 TCGGCAAAAAGGGTGTTCGT 60.749 50.000 0.00 0.00 0.00 3.85
391 563 1.029681 GGCAAAAAGGGTGTTCGTCT 58.970 50.000 0.00 0.00 0.00 4.18
392 564 1.001706 GGCAAAAAGGGTGTTCGTCTC 60.002 52.381 0.00 0.00 0.00 3.36
393 565 1.333791 GCAAAAAGGGTGTTCGTCTCG 60.334 52.381 0.00 0.00 0.00 4.04
394 566 0.942252 AAAAAGGGTGTTCGTCTCGC 59.058 50.000 0.00 0.00 0.00 5.03
395 567 0.179067 AAAAGGGTGTTCGTCTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
396 568 0.179067 AAAGGGTGTTCGTCTCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
397 569 0.179067 AAGGGTGTTCGTCTCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
398 570 0.179067 AGGGTGTTCGTCTCGCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
399 571 0.658897 GGGTGTTCGTCTCGCAAAAA 59.341 50.000 0.00 0.00 0.00 1.94
452 676 9.660180 TGCCTTTAAAGTTTAAACAAAATCTGT 57.340 25.926 20.06 0.00 41.27 3.41
467 691 9.841295 AACAAAATCTGTACTACTTGGTCTAAA 57.159 29.630 0.00 0.00 37.23 1.85
468 692 9.841295 ACAAAATCTGTACTACTTGGTCTAAAA 57.159 29.630 0.00 0.00 36.10 1.52
501 725 8.484641 AGAAAAGAAAAGAAAAGAAAAGCAGG 57.515 30.769 0.00 0.00 0.00 4.85
503 727 7.834068 AAAGAAAAGAAAAGAAAAGCAGGAC 57.166 32.000 0.00 0.00 0.00 3.85
515 754 0.613012 AGCAGGACAGGAAAATGGGC 60.613 55.000 0.00 0.00 0.00 5.36
526 765 4.216257 CAGGAAAATGGGCATATTCGGTAG 59.784 45.833 0.00 0.00 0.00 3.18
532 771 2.140717 GGGCATATTCGGTAGGAAACG 58.859 52.381 0.00 0.00 38.36 3.60
546 787 4.530710 AGGAAACGGGGAAATAAAAAGC 57.469 40.909 0.00 0.00 0.00 3.51
584 828 3.427573 GCCTACTAAACAAATGGTGGGT 58.572 45.455 0.00 0.00 33.72 4.51
707 986 2.729194 CGGAGGAGAGAGAAAGAAGGA 58.271 52.381 0.00 0.00 0.00 3.36
711 990 1.484653 GGAGAGAGAAAGAAGGAGGCC 59.515 57.143 0.00 0.00 0.00 5.19
712 991 1.136110 GAGAGAGAAAGAAGGAGGCCG 59.864 57.143 0.00 0.00 0.00 6.13
713 992 1.187087 GAGAGAAAGAAGGAGGCCGA 58.813 55.000 0.00 0.00 0.00 5.54
752 1199 4.038080 CGGAACAAAGGGGCACGC 62.038 66.667 0.00 0.00 43.76 5.34
833 1290 3.653009 CACGCACACAGCCACCAG 61.653 66.667 0.00 0.00 41.38 4.00
891 1385 0.109153 TGACCGGATAGGCTACGCTA 59.891 55.000 9.46 0.00 46.52 4.26
892 1386 0.803740 GACCGGATAGGCTACGCTAG 59.196 60.000 9.46 0.00 46.52 3.42
893 1387 0.608582 ACCGGATAGGCTACGCTAGG 60.609 60.000 9.46 3.49 46.52 3.02
918 1412 0.526524 CCACGCTCGAGATGAAGGTC 60.527 60.000 18.75 0.00 0.00 3.85
942 1436 1.303074 CAAGGAGCAGGAGCAGCAA 60.303 57.895 0.00 0.00 45.49 3.91
947 1441 2.981909 GCAGGAGCAGCAACAGCA 60.982 61.111 0.00 0.00 41.58 4.41
948 1442 2.558286 GCAGGAGCAGCAACAGCAA 61.558 57.895 0.00 0.00 41.58 3.91
949 1443 1.285023 CAGGAGCAGCAACAGCAAC 59.715 57.895 0.00 0.00 0.00 4.17
950 1444 1.152902 AGGAGCAGCAACAGCAACA 60.153 52.632 0.00 0.00 0.00 3.33
951 1445 1.008079 GGAGCAGCAACAGCAACAC 60.008 57.895 0.00 0.00 0.00 3.32
952 1446 1.727511 GGAGCAGCAACAGCAACACA 61.728 55.000 0.00 0.00 0.00 3.72
953 1447 0.317603 GAGCAGCAACAGCAACACAG 60.318 55.000 0.00 0.00 0.00 3.66
954 1448 1.299620 GCAGCAACAGCAACACAGG 60.300 57.895 0.00 0.00 0.00 4.00
955 1449 1.361271 CAGCAACAGCAACACAGGG 59.639 57.895 0.00 0.00 0.00 4.45
956 1450 2.028043 GCAACAGCAACACAGGGC 59.972 61.111 0.00 0.00 0.00 5.19
959 1453 3.414136 AACAGCAACACAGGGCGGA 62.414 57.895 0.00 0.00 34.54 5.54
994 1488 1.988982 GAAGGAGGAGGCCATGGACC 61.989 65.000 16.13 15.57 0.00 4.46
995 1489 3.493303 GGAGGAGGCCATGGACCC 61.493 72.222 16.13 15.75 0.00 4.46
996 1490 3.866582 GAGGAGGCCATGGACCCG 61.867 72.222 16.13 0.00 0.00 5.28
1125 1634 3.406060 CTTCGTCAATGCCGTCGCG 62.406 63.158 0.00 0.00 38.08 5.87
1233 1742 0.246635 TCTACGAGGGCTTCTGCAAC 59.753 55.000 0.00 0.00 41.91 4.17
1253 1762 2.031012 CAAGCAGGTCGGTCAGCA 59.969 61.111 0.00 0.00 0.00 4.41
1263 1772 4.521062 GGTCAGCATCGCCGCTCT 62.521 66.667 0.00 0.00 41.38 4.09
1264 1773 3.260483 GTCAGCATCGCCGCTCTG 61.260 66.667 0.00 0.00 41.38 3.35
1265 1774 3.763356 TCAGCATCGCCGCTCTGT 61.763 61.111 0.00 0.00 41.38 3.41
1266 1775 2.816958 CAGCATCGCCGCTCTGTT 60.817 61.111 0.00 0.00 41.38 3.16
1269 1778 2.185350 CATCGCCGCTCTGTTCCT 59.815 61.111 0.00 0.00 0.00 3.36
1283 1792 1.856920 TGTTCCTCCCCCTTTTCAACT 59.143 47.619 0.00 0.00 0.00 3.16
1285 1794 0.112412 TCCTCCCCCTTTTCAACTGC 59.888 55.000 0.00 0.00 0.00 4.40
1325 1835 0.929244 AAGGAGTTGGATGGATGGGG 59.071 55.000 0.00 0.00 0.00 4.96
1326 1836 0.995675 AGGAGTTGGATGGATGGGGG 60.996 60.000 0.00 0.00 0.00 5.40
1351 1861 4.440127 GCCATTGGCCAGCAACCG 62.440 66.667 17.28 0.00 44.06 4.44
1368 1878 1.450312 CGAGCATGTGAACCCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
1385 1896 3.018805 CCCGGCCTCCCCCTTTAA 61.019 66.667 0.00 0.00 0.00 1.52
1388 1899 1.150764 CGGCCTCCCCCTTTAATCC 59.849 63.158 0.00 0.00 0.00 3.01
1409 1920 1.447317 CGCCCGCCATTAATTGCTCT 61.447 55.000 9.59 0.00 0.00 4.09
1415 1926 3.369147 CCGCCATTAATTGCTCTATCTCG 59.631 47.826 9.59 0.00 0.00 4.04
1416 1927 4.237724 CGCCATTAATTGCTCTATCTCGA 58.762 43.478 9.59 0.00 0.00 4.04
1439 1950 5.050490 AGCAGCACCAGTAGTATAATTTCG 58.950 41.667 0.00 0.00 0.00 3.46
1440 1951 5.047847 GCAGCACCAGTAGTATAATTTCGA 58.952 41.667 0.00 0.00 0.00 3.71
1441 1952 5.175856 GCAGCACCAGTAGTATAATTTCGAG 59.824 44.000 0.00 0.00 0.00 4.04
1442 1953 5.175856 CAGCACCAGTAGTATAATTTCGAGC 59.824 44.000 0.00 0.00 0.00 5.03
1443 1954 4.448060 GCACCAGTAGTATAATTTCGAGCC 59.552 45.833 0.00 0.00 0.00 4.70
1444 1955 5.739358 GCACCAGTAGTATAATTTCGAGCCT 60.739 44.000 0.00 0.00 0.00 4.58
1445 1956 5.692204 CACCAGTAGTATAATTTCGAGCCTG 59.308 44.000 0.00 0.00 0.00 4.85
1446 1957 5.597182 ACCAGTAGTATAATTTCGAGCCTGA 59.403 40.000 0.00 0.00 0.00 3.86
1447 1958 6.267928 ACCAGTAGTATAATTTCGAGCCTGAT 59.732 38.462 0.00 0.00 0.00 2.90
1448 1959 7.155328 CCAGTAGTATAATTTCGAGCCTGATT 58.845 38.462 0.00 0.00 0.00 2.57
1449 1960 7.657761 CCAGTAGTATAATTTCGAGCCTGATTT 59.342 37.037 0.00 0.00 0.00 2.17
1450 1961 8.704234 CAGTAGTATAATTTCGAGCCTGATTTC 58.296 37.037 0.00 0.00 0.00 2.17
1451 1962 6.771188 AGTATAATTTCGAGCCTGATTTCG 57.229 37.500 0.00 0.00 38.13 3.46
1488 1999 2.030274 GGGGTTCGGATTTCAACAACTG 60.030 50.000 0.00 0.00 0.00 3.16
1491 2002 4.440940 GGGTTCGGATTTCAACAACTGTTT 60.441 41.667 0.00 0.00 35.83 2.83
1498 2009 6.019881 CGGATTTCAACAACTGTTTTTCTTCC 60.020 38.462 0.00 0.00 35.83 3.46
1512 2023 2.510691 TTCCGCGATTCTTCCGGC 60.511 61.111 8.23 0.00 41.68 6.13
1513 2024 4.524318 TCCGCGATTCTTCCGGCC 62.524 66.667 8.23 0.00 41.68 6.13
1530 2041 2.790791 CCGCTGTGCCACCCAAAAA 61.791 57.895 0.00 0.00 0.00 1.94
1544 2055 3.378427 ACCCAAAAATGCTATCTTCTCGC 59.622 43.478 0.00 0.00 0.00 5.03
1564 2075 2.560105 GCCTGATTTCTTGGCTTCAACT 59.440 45.455 0.00 0.00 43.05 3.16
1566 2077 4.379918 GCCTGATTTCTTGGCTTCAACTAC 60.380 45.833 0.00 0.00 43.05 2.73
1579 2090 4.390297 GCTTCAACTACAGATTCTCCACAC 59.610 45.833 0.00 0.00 0.00 3.82
1587 2098 5.495926 ACAGATTCTCCACACAAATCTCT 57.504 39.130 0.00 0.00 37.59 3.10
1599 2110 3.952323 CACAAATCTCTTCTCCATGCCAT 59.048 43.478 0.00 0.00 0.00 4.40
1623 2135 0.811281 GATTTCCGGGGCTGTTCTTG 59.189 55.000 0.00 0.00 0.00 3.02
1636 2148 3.858503 GCTGTTCTTGCTCCACCATTTTC 60.859 47.826 0.00 0.00 0.00 2.29
1646 2158 4.023707 GCTCCACCATTTTCGGATCTATTG 60.024 45.833 0.00 0.00 0.00 1.90
1649 2161 4.881273 CCACCATTTTCGGATCTATTGTCA 59.119 41.667 0.00 0.00 0.00 3.58
1654 2166 7.280205 ACCATTTTCGGATCTATTGTCAACTAC 59.720 37.037 0.00 0.00 0.00 2.73
1658 2173 7.876936 TTCGGATCTATTGTCAACTACTAGT 57.123 36.000 0.00 0.00 0.00 2.57
1709 2240 1.820519 TGACCCATGCTGCAAAGATTC 59.179 47.619 6.36 0.56 0.00 2.52
1751 2289 5.884232 TCATTCTCATGGATTTCCTTCTGTG 59.116 40.000 0.00 0.00 36.82 3.66
1839 2384 1.300971 CGGTTGCCACACTGATCTGG 61.301 60.000 4.49 0.00 0.00 3.86
1861 2406 4.576463 GGTGGTGAATTTGCCATCTAGTAG 59.424 45.833 5.41 0.00 37.09 2.57
1863 2408 6.346096 GTGGTGAATTTGCCATCTAGTAGTA 58.654 40.000 5.41 0.00 37.09 1.82
1864 2409 6.480320 GTGGTGAATTTGCCATCTAGTAGTAG 59.520 42.308 5.41 0.00 37.09 2.57
1865 2410 6.156256 TGGTGAATTTGCCATCTAGTAGTAGT 59.844 38.462 4.51 0.00 0.00 2.73
1866 2411 7.343574 TGGTGAATTTGCCATCTAGTAGTAGTA 59.656 37.037 4.51 0.00 0.00 1.82
1867 2412 7.652507 GGTGAATTTGCCATCTAGTAGTAGTAC 59.347 40.741 4.51 0.00 0.00 2.73
1868 2413 8.414778 GTGAATTTGCCATCTAGTAGTAGTACT 58.585 37.037 14.57 14.57 42.49 2.73
1889 2434 0.937304 GTTGCTCAACTTCAGCGTGA 59.063 50.000 5.56 0.00 40.01 4.35
1894 2439 2.996621 GCTCAACTTCAGCGTGATAACT 59.003 45.455 0.00 0.00 0.00 2.24
1914 2459 0.110486 AACTTCCCCTTGTGCGATGT 59.890 50.000 0.00 0.00 0.00 3.06
1915 2460 0.606401 ACTTCCCCTTGTGCGATGTG 60.606 55.000 0.00 0.00 0.00 3.21
1916 2461 0.321564 CTTCCCCTTGTGCGATGTGA 60.322 55.000 0.00 0.00 0.00 3.58
1923 2468 2.287103 CCTTGTGCGATGTGATGATGAG 59.713 50.000 0.00 0.00 0.00 2.90
2036 2581 0.107312 CTGGGCATCACCAAGAGGAG 60.107 60.000 0.00 0.00 43.15 3.69
2497 3046 2.536761 AGATCGTCTACCGGAGAGAG 57.463 55.000 9.46 4.38 33.72 3.20
2506 3055 1.066587 CCGGAGAGAGTCGAATGCC 59.933 63.158 0.00 0.00 0.00 4.40
2512 3061 0.526524 GAGAGTCGAATGCCCACTCG 60.527 60.000 0.00 0.00 41.32 4.18
2569 3118 5.360714 TGATGATGAGATGTACTGTGTGCTA 59.639 40.000 0.00 0.00 0.00 3.49
2605 3154 1.622811 CAGCAGGGTGAAGAAGAGAGT 59.377 52.381 0.00 0.00 0.00 3.24
2659 3208 3.039588 GCCGCCGACGAAGAACAA 61.040 61.111 0.00 0.00 43.93 2.83
2710 3271 0.694771 AGGAAGAACAGCAGCCATCA 59.305 50.000 0.00 0.00 0.00 3.07
2711 3272 1.284198 AGGAAGAACAGCAGCCATCAT 59.716 47.619 0.00 0.00 0.00 2.45
2728 3289 1.142667 TCATGTGTGGAACCTGCTGAA 59.857 47.619 0.00 0.00 34.36 3.02
2764 3328 2.067766 GTTCAGACTGAAGCAGCAGAG 58.932 52.381 18.24 3.11 37.00 3.35
2815 3379 0.674895 GCCAGAAAGATGTGGTCGCT 60.675 55.000 0.00 0.00 41.99 4.93
2998 3562 2.436292 GGCAGGAGCAGCAGTGAG 60.436 66.667 0.00 0.00 44.61 3.51
3052 3616 1.522580 GGATCTGTTCTGCCGGCTC 60.523 63.158 29.70 13.94 0.00 4.70
3103 3667 2.124278 GGGGGATCCAAGCGTTCC 60.124 66.667 15.23 3.02 35.00 3.62
3302 3866 5.654650 CCTACTAGTTCTCCAATGTCTCTGT 59.345 44.000 0.00 0.00 0.00 3.41
3329 3893 1.472878 TGATCGAAGGAAGGTCTGACG 59.527 52.381 1.07 0.00 0.00 4.35
3442 4006 1.798813 CCAAGCCGTTACAGTTCTGTC 59.201 52.381 8.80 0.00 0.00 3.51
3463 4027 2.553466 CCACCCGGACAACAAATCCTTA 60.553 50.000 0.73 0.00 33.70 2.69
3505 4069 0.804364 TGCGTGGTGATTCAGAATGC 59.196 50.000 0.00 0.00 34.76 3.56
3675 4239 6.777580 ACATCAAACTTCTCACCAGGTAATTT 59.222 34.615 0.00 0.00 0.00 1.82
3682 4246 7.602753 ACTTCTCACCAGGTAATTTTATTTGC 58.397 34.615 0.00 0.00 0.00 3.68
3705 4269 7.650890 TGCCATCTACATTGCTTTGTTATATG 58.349 34.615 0.00 0.00 0.00 1.78
3707 4271 7.522725 GCCATCTACATTGCTTTGTTATATGCT 60.523 37.037 0.00 0.00 0.00 3.79
3708 4272 9.002600 CCATCTACATTGCTTTGTTATATGCTA 57.997 33.333 0.00 0.00 0.00 3.49
3718 4282 9.352784 TGCTTTGTTATATGCTATGTTTGTTTC 57.647 29.630 0.00 0.00 0.00 2.78
3847 4411 3.500680 CCACGTTTACAAGGCACAGTTAT 59.499 43.478 0.00 0.00 0.00 1.89
3935 4499 3.576982 ACGGAGATTGAGACTGTAACCAA 59.423 43.478 0.00 0.00 0.00 3.67
4069 4637 5.049474 GGTAAGCATCATGATGAAATACGCA 60.049 40.000 34.65 10.51 41.20 5.24
4071 4639 5.104562 AGCATCATGATGAAATACGCAAG 57.895 39.130 34.65 8.21 41.20 4.01
4087 4655 2.387757 GCAAGCTATTCCATCCCCAAA 58.612 47.619 0.00 0.00 0.00 3.28
4221 4790 0.391528 TCTGCATCATGGTGGTGTCG 60.392 55.000 8.33 0.00 29.39 4.35
4223 4792 3.092403 CATCATGGTGGTGTCGCG 58.908 61.111 0.00 0.00 0.00 5.87
4224 4793 2.819595 ATCATGGTGGTGTCGCGC 60.820 61.111 0.00 0.00 0.00 6.86
4226 4795 2.874648 ATCATGGTGGTGTCGCGCAT 62.875 55.000 8.75 0.00 0.00 4.73
4325 4894 4.757149 AGAGATCTGTTTGCAAGTACCAAC 59.243 41.667 0.00 0.00 0.00 3.77
4327 4896 4.887071 AGATCTGTTTGCAAGTACCAACAA 59.113 37.500 0.00 0.00 0.00 2.83
4451 5052 2.556144 TCTGCTCTGCTTGTGACATT 57.444 45.000 0.00 0.00 0.00 2.71
4456 5057 2.159234 GCTCTGCTTGTGACATTGTCTC 59.841 50.000 17.26 14.06 33.15 3.36
4457 5058 3.661944 CTCTGCTTGTGACATTGTCTCT 58.338 45.455 17.26 0.00 33.15 3.10
4481 5082 7.222611 TCTCTGTTTTTAAAATTTCAGCTGTGC 59.777 33.333 14.67 0.00 0.00 4.57
4520 5121 1.704641 AAGTTTCAGCTTCAACCCCC 58.295 50.000 1.78 0.00 0.00 5.40
4594 5199 3.005791 AGCTATGGTTGTTGCCACTTTTC 59.994 43.478 0.00 0.00 41.94 2.29
4701 5306 3.994392 ACAAGAAAATCGATGTGTACGCT 59.006 39.130 8.10 0.00 0.00 5.07
4760 5367 2.631160 CCCATTATAACAGGGTGCGA 57.369 50.000 14.17 0.00 37.81 5.10
4794 5401 1.379044 CCTGGTTGGATGGGTGAGC 60.379 63.158 0.00 0.00 38.35 4.26
4821 5428 6.363065 AGTACTCCCTCACTCGATTTATACA 58.637 40.000 0.00 0.00 0.00 2.29
4854 5461 0.037326 TCGGAACAGTGACATGCTCC 60.037 55.000 0.00 0.00 32.99 4.70
4857 5464 1.608025 GGAACAGTGACATGCTCCGAA 60.608 52.381 0.00 0.00 0.00 4.30
5139 5746 0.037326 TGTGCACGAGGACATCTTCC 60.037 55.000 13.13 0.00 41.46 3.46
5151 5758 1.137086 ACATCTTCCGATTCCAGACCG 59.863 52.381 0.00 0.00 0.00 4.79
5160 5767 3.973458 TCCAGACCGGAAACACCA 58.027 55.556 9.46 0.00 42.52 4.17
5163 5770 0.179029 CCAGACCGGAAACACCACTT 60.179 55.000 9.46 0.00 38.90 3.16
5173 5780 3.002965 GGAAACACCACTTGTAAGAACGG 59.997 47.826 0.00 0.00 37.51 4.44
5176 5783 3.399330 ACACCACTTGTAAGAACGGATG 58.601 45.455 0.00 1.50 36.32 3.51
5177 5784 3.070446 ACACCACTTGTAAGAACGGATGA 59.930 43.478 0.00 0.00 36.32 2.92
5181 5788 5.008316 ACCACTTGTAAGAACGGATGAAAAC 59.992 40.000 0.00 0.00 0.00 2.43
5182 5789 5.008217 CCACTTGTAAGAACGGATGAAAACA 59.992 40.000 0.00 0.00 0.00 2.83
5183 5790 5.907391 CACTTGTAAGAACGGATGAAAACAC 59.093 40.000 0.00 0.00 0.00 3.32
5188 5795 3.661911 CGGATGAAAACACCGCCA 58.338 55.556 0.00 0.00 40.19 5.69
5189 5796 1.501741 CGGATGAAAACACCGCCAG 59.498 57.895 0.00 0.00 40.19 4.85
5190 5797 1.234615 CGGATGAAAACACCGCCAGT 61.235 55.000 0.00 0.00 40.19 4.00
5191 5798 0.521735 GGATGAAAACACCGCCAGTC 59.478 55.000 0.00 0.00 0.00 3.51
5192 5799 0.521735 GATGAAAACACCGCCAGTCC 59.478 55.000 0.00 0.00 0.00 3.85
5195 5802 0.534203 GAAAACACCGCCAGTCCTCA 60.534 55.000 0.00 0.00 0.00 3.86
5196 5803 0.110486 AAAACACCGCCAGTCCTCAT 59.890 50.000 0.00 0.00 0.00 2.90
5197 5804 0.606401 AAACACCGCCAGTCCTCATG 60.606 55.000 0.00 0.00 0.00 3.07
5199 5806 0.902984 ACACCGCCAGTCCTCATGTA 60.903 55.000 0.00 0.00 0.00 2.29
5202 5809 1.338769 ACCGCCAGTCCTCATGTAAAC 60.339 52.381 0.00 0.00 0.00 2.01
5206 5813 2.945668 GCCAGTCCTCATGTAAACATCC 59.054 50.000 0.00 0.00 33.61 3.51
5207 5814 3.622206 GCCAGTCCTCATGTAAACATCCA 60.622 47.826 0.00 0.00 33.61 3.41
5208 5815 4.785301 CCAGTCCTCATGTAAACATCCAT 58.215 43.478 0.00 0.00 33.61 3.41
5209 5816 5.195940 CCAGTCCTCATGTAAACATCCATT 58.804 41.667 0.00 0.00 33.61 3.16
5210 5817 5.066893 CCAGTCCTCATGTAAACATCCATTG 59.933 44.000 0.00 0.00 33.61 2.82
5211 5818 4.641989 AGTCCTCATGTAAACATCCATTGC 59.358 41.667 0.00 0.00 33.61 3.56
5214 5822 4.641541 CCTCATGTAAACATCCATTGCTGA 59.358 41.667 0.00 0.00 33.61 4.26
5219 5827 1.855295 AACATCCATTGCTGATGCCA 58.145 45.000 0.00 0.00 42.68 4.92
5224 5832 1.179152 CCATTGCTGATGCCACAGAA 58.821 50.000 10.69 0.00 39.94 3.02
5234 5842 4.005650 TGATGCCACAGAAATCTGACTTC 58.994 43.478 16.93 12.26 46.59 3.01
5235 5843 3.777106 TGCCACAGAAATCTGACTTCT 57.223 42.857 16.93 0.00 46.59 2.85
5247 5855 9.050601 AGAAATCTGACTTCTCTAAACTTTGTG 57.949 33.333 0.00 0.00 0.00 3.33
5451 6069 4.436998 CAGACCGCCGACACCTCC 62.437 72.222 0.00 0.00 0.00 4.30
5500 6118 0.384974 GAGCTTCGACTAGGCGATCG 60.385 60.000 23.79 16.94 40.35 3.69
5531 6149 0.865769 GCGTGGTTCCTGTACAGTTG 59.134 55.000 21.18 7.42 0.00 3.16
5541 6159 3.508402 TCCTGTACAGTTGCTGACGATTA 59.492 43.478 21.18 0.00 35.18 1.75
5542 6160 4.159693 TCCTGTACAGTTGCTGACGATTAT 59.840 41.667 21.18 0.00 35.18 1.28
5544 6162 5.220472 CCTGTACAGTTGCTGACGATTATTG 60.220 44.000 21.18 0.00 35.18 1.90
5545 6163 5.234752 TGTACAGTTGCTGACGATTATTGT 58.765 37.500 2.91 0.00 35.18 2.71
5546 6164 4.928661 ACAGTTGCTGACGATTATTGTC 57.071 40.909 5.67 5.67 35.18 3.18
5547 6165 4.314961 ACAGTTGCTGACGATTATTGTCA 58.685 39.130 13.94 13.94 43.68 3.58
5548 6166 4.754618 ACAGTTGCTGACGATTATTGTCAA 59.245 37.500 15.27 0.39 45.05 3.18
5549 6167 5.412594 ACAGTTGCTGACGATTATTGTCAAT 59.587 36.000 15.27 3.06 45.05 2.57
5550 6168 6.072508 ACAGTTGCTGACGATTATTGTCAATT 60.073 34.615 15.27 0.00 45.05 2.32
5551 6169 6.249893 CAGTTGCTGACGATTATTGTCAATTG 59.750 38.462 15.27 0.00 45.05 2.32
5552 6170 5.233957 TGCTGACGATTATTGTCAATTGG 57.766 39.130 15.27 6.08 45.05 3.16
5554 6172 5.182950 TGCTGACGATTATTGTCAATTGGTT 59.817 36.000 15.27 0.00 45.05 3.67
5556 6174 5.948588 TGACGATTATTGTCAATTGGTTGG 58.051 37.500 12.47 0.00 42.99 3.77
5557 6175 5.707764 TGACGATTATTGTCAATTGGTTGGA 59.292 36.000 12.47 0.00 42.99 3.53
5558 6176 6.207614 TGACGATTATTGTCAATTGGTTGGAA 59.792 34.615 12.47 0.00 42.99 3.53
5559 6177 6.386654 ACGATTATTGTCAATTGGTTGGAAC 58.613 36.000 5.42 0.00 35.99 3.62
5560 6178 5.511377 CGATTATTGTCAATTGGTTGGAACG 59.489 40.000 5.42 0.48 35.99 3.95
5561 6179 3.658757 ATTGTCAATTGGTTGGAACGG 57.341 42.857 5.42 0.00 35.99 4.44
5562 6180 1.323412 TGTCAATTGGTTGGAACGGG 58.677 50.000 5.42 0.00 35.99 5.28
5563 6181 1.324383 GTCAATTGGTTGGAACGGGT 58.676 50.000 5.42 0.00 35.99 5.28
5564 6182 2.158652 TGTCAATTGGTTGGAACGGGTA 60.159 45.455 5.42 0.00 35.99 3.69
5565 6183 2.885894 GTCAATTGGTTGGAACGGGTAA 59.114 45.455 5.42 0.00 35.99 2.85
5566 6184 3.508402 GTCAATTGGTTGGAACGGGTAAT 59.492 43.478 5.42 0.00 35.99 1.89
5567 6185 4.021807 GTCAATTGGTTGGAACGGGTAATT 60.022 41.667 5.42 0.00 35.99 1.40
5568 6186 4.021894 TCAATTGGTTGGAACGGGTAATTG 60.022 41.667 5.42 0.00 36.12 2.32
5569 6187 1.249407 TGGTTGGAACGGGTAATTGC 58.751 50.000 0.00 0.00 0.00 3.56
5570 6188 1.202952 TGGTTGGAACGGGTAATTGCT 60.203 47.619 0.00 0.00 0.00 3.91
5571 6189 1.201414 GGTTGGAACGGGTAATTGCTG 59.799 52.381 0.00 0.00 0.00 4.41
5572 6190 0.885196 TTGGAACGGGTAATTGCTGC 59.115 50.000 0.00 0.00 0.00 5.25
5573 6191 0.250945 TGGAACGGGTAATTGCTGCA 60.251 50.000 0.00 0.00 0.00 4.41
5574 6192 0.451783 GGAACGGGTAATTGCTGCAG 59.548 55.000 10.11 10.11 0.00 4.41
5575 6193 1.165270 GAACGGGTAATTGCTGCAGT 58.835 50.000 16.64 0.00 0.00 4.40
5576 6194 0.881118 AACGGGTAATTGCTGCAGTG 59.119 50.000 16.64 0.00 0.00 3.66
5577 6195 0.960364 ACGGGTAATTGCTGCAGTGG 60.960 55.000 16.64 0.00 0.00 4.00
5578 6196 0.676466 CGGGTAATTGCTGCAGTGGA 60.676 55.000 16.64 1.70 0.00 4.02
5579 6197 1.098050 GGGTAATTGCTGCAGTGGAG 58.902 55.000 16.64 7.39 0.00 3.86
5580 6198 1.098050 GGTAATTGCTGCAGTGGAGG 58.902 55.000 16.64 0.00 0.00 4.30
5581 6199 0.453390 GTAATTGCTGCAGTGGAGGC 59.547 55.000 16.64 6.47 0.00 4.70
5582 6200 0.038021 TAATTGCTGCAGTGGAGGCA 59.962 50.000 16.64 9.01 39.32 4.75
5583 6201 0.613853 AATTGCTGCAGTGGAGGCAT 60.614 50.000 16.64 0.00 41.06 4.40
5584 6202 1.035932 ATTGCTGCAGTGGAGGCATC 61.036 55.000 16.64 0.00 41.06 3.91
5585 6203 2.133359 TTGCTGCAGTGGAGGCATCT 62.133 55.000 16.64 0.00 41.06 2.90
5586 6204 1.818785 GCTGCAGTGGAGGCATCTC 60.819 63.158 16.64 0.00 41.06 2.75
5587 6205 1.600638 CTGCAGTGGAGGCATCTCA 59.399 57.895 5.25 0.00 41.06 3.27
5588 6206 0.743701 CTGCAGTGGAGGCATCTCAC 60.744 60.000 5.25 10.71 41.06 3.51
5589 6207 1.812922 GCAGTGGAGGCATCTCACG 60.813 63.158 12.24 9.44 41.69 4.35
5590 6208 1.593787 CAGTGGAGGCATCTCACGT 59.406 57.895 12.24 0.00 41.69 4.49
5591 6209 0.459237 CAGTGGAGGCATCTCACGTC 60.459 60.000 12.24 0.00 41.69 4.34
5592 6210 1.153549 GTGGAGGCATCTCACGTCC 60.154 63.158 0.00 0.00 41.69 4.79
5593 6211 2.105128 GGAGGCATCTCACGTCCG 59.895 66.667 0.00 0.00 41.69 4.79
5669 6288 4.619320 TGGGTGCTTGGCTTGGGG 62.619 66.667 0.00 0.00 0.00 4.96
5675 6294 2.115910 CTTGGCTTGGGGTGCTCA 59.884 61.111 0.00 0.00 0.00 4.26
5688 6307 1.338105 GGTGCTCAGCTCATGTGTGTA 60.338 52.381 0.00 0.00 0.00 2.90
5690 6309 3.430790 GGTGCTCAGCTCATGTGTGTATA 60.431 47.826 0.00 0.00 0.00 1.47
5702 6329 3.374764 TGTGTGTATATGCAGGGAGAGT 58.625 45.455 0.00 0.00 0.00 3.24
5714 6341 2.102757 CAGGGAGAGTGATGTCTGATGG 59.897 54.545 0.00 0.00 0.00 3.51
5720 6347 2.417933 GAGTGATGTCTGATGGTGTTGC 59.582 50.000 0.00 0.00 0.00 4.17
5723 6350 2.224597 TGATGTCTGATGGTGTTGCTGT 60.225 45.455 0.00 0.00 0.00 4.40
5732 6359 4.039004 TGATGGTGTTGCTGTTGCTAATTT 59.961 37.500 0.00 0.00 40.48 1.82
5733 6360 3.715495 TGGTGTTGCTGTTGCTAATTTG 58.285 40.909 0.00 0.00 40.48 2.32
5735 6362 4.142071 TGGTGTTGCTGTTGCTAATTTGAA 60.142 37.500 0.00 0.00 40.48 2.69
5737 6364 5.466393 GGTGTTGCTGTTGCTAATTTGAATT 59.534 36.000 0.00 0.00 40.48 2.17
5739 6366 7.148755 GGTGTTGCTGTTGCTAATTTGAATTAG 60.149 37.037 15.77 15.77 46.72 1.73
5740 6367 6.867816 TGTTGCTGTTGCTAATTTGAATTAGG 59.132 34.615 19.62 8.23 45.03 2.69
5741 6368 6.832520 TGCTGTTGCTAATTTGAATTAGGA 57.167 33.333 19.62 16.03 45.03 2.94
5783 6413 8.982091 TTGTAGTAGCAGTTGTAGATCTATCT 57.018 34.615 5.57 2.83 40.86 1.98
5806 6436 0.480690 TAACCTTTGCTGGCCTTGGA 59.519 50.000 3.32 0.00 0.00 3.53
5830 6460 4.275689 TGGCAAAGCATTCTACGATTATGG 59.724 41.667 0.00 0.00 0.00 2.74
5831 6461 4.275936 GGCAAAGCATTCTACGATTATGGT 59.724 41.667 0.00 0.00 0.00 3.55
5850 6480 5.913137 TGGTGAATGAATGTATGGTTTCC 57.087 39.130 0.00 0.00 0.00 3.13
5867 6497 2.885135 TCCTGGTGCATCAAGATTGT 57.115 45.000 0.00 0.00 0.00 2.71
5869 6499 3.877559 TCCTGGTGCATCAAGATTGTAG 58.122 45.455 0.00 0.00 0.00 2.74
5870 6500 3.519107 TCCTGGTGCATCAAGATTGTAGA 59.481 43.478 0.00 0.00 0.00 2.59
5871 6501 4.164796 TCCTGGTGCATCAAGATTGTAGAT 59.835 41.667 0.00 0.00 0.00 1.98
5872 6502 4.885907 CCTGGTGCATCAAGATTGTAGATT 59.114 41.667 0.00 0.00 0.00 2.40
5873 6503 5.220989 CCTGGTGCATCAAGATTGTAGATTG 60.221 44.000 0.00 0.00 0.00 2.67
5874 6504 4.641541 TGGTGCATCAAGATTGTAGATTGG 59.358 41.667 0.00 0.00 0.00 3.16
5875 6505 4.883585 GGTGCATCAAGATTGTAGATTGGA 59.116 41.667 0.00 0.00 0.00 3.53
5876 6506 5.533903 GGTGCATCAAGATTGTAGATTGGAT 59.466 40.000 0.00 0.00 0.00 3.41
5878 6522 6.916387 GTGCATCAAGATTGTAGATTGGATTG 59.084 38.462 0.00 0.00 0.00 2.67
5892 6536 5.524646 AGATTGGATTGTTGCTTTTGTGTTG 59.475 36.000 0.00 0.00 0.00 3.33
5895 6539 3.001533 GGATTGTTGCTTTTGTGTTGCTG 59.998 43.478 0.00 0.00 0.00 4.41
5902 6553 2.287248 GCTTTTGTGTTGCTGTCTCCTC 60.287 50.000 0.00 0.00 0.00 3.71
5923 6574 2.947652 CGGATGCCATCTTGAACAATCT 59.052 45.455 4.41 0.00 0.00 2.40
5924 6575 4.129380 CGGATGCCATCTTGAACAATCTA 58.871 43.478 4.41 0.00 0.00 1.98
5925 6576 4.024556 CGGATGCCATCTTGAACAATCTAC 60.025 45.833 4.41 0.00 0.00 2.59
5928 6579 4.009675 TGCCATCTTGAACAATCTACCAC 58.990 43.478 0.00 0.00 0.00 4.16
5929 6580 4.263462 TGCCATCTTGAACAATCTACCACT 60.263 41.667 0.00 0.00 0.00 4.00
5930 6581 5.045942 TGCCATCTTGAACAATCTACCACTA 60.046 40.000 0.00 0.00 0.00 2.74
5931 6582 6.058183 GCCATCTTGAACAATCTACCACTAT 58.942 40.000 0.00 0.00 0.00 2.12
5932 6583 6.203723 GCCATCTTGAACAATCTACCACTATC 59.796 42.308 0.00 0.00 0.00 2.08
5940 6591 6.814954 ACAATCTACCACTATCATTCAGGT 57.185 37.500 0.00 0.00 36.40 4.00
5971 6622 2.946947 GCTTTACAGGCAAGCAGGA 58.053 52.632 2.71 0.00 45.19 3.86
5972 6623 0.807496 GCTTTACAGGCAAGCAGGAG 59.193 55.000 2.71 0.00 45.19 3.69
5973 6624 0.807496 CTTTACAGGCAAGCAGGAGC 59.193 55.000 0.00 0.00 42.56 4.70
5982 6633 0.391395 CAAGCAGGAGCCTCTGACAG 60.391 60.000 7.94 0.00 43.56 3.51
5988 6639 0.248843 GGAGCCTCTGACAGTGAAGG 59.751 60.000 6.09 5.30 0.00 3.46
5989 6640 0.972883 GAGCCTCTGACAGTGAAGGT 59.027 55.000 6.09 0.00 0.00 3.50
5990 6641 2.171840 GAGCCTCTGACAGTGAAGGTA 58.828 52.381 6.09 0.00 0.00 3.08
5991 6642 1.896465 AGCCTCTGACAGTGAAGGTAC 59.104 52.381 6.09 0.00 0.00 3.34
5992 6643 1.066787 GCCTCTGACAGTGAAGGTACC 60.067 57.143 2.73 2.73 0.00 3.34
5993 6644 1.550976 CCTCTGACAGTGAAGGTACCC 59.449 57.143 8.74 0.00 0.00 3.69
5994 6645 2.248248 CTCTGACAGTGAAGGTACCCA 58.752 52.381 8.74 0.00 0.00 4.51
5995 6646 2.834549 CTCTGACAGTGAAGGTACCCAT 59.165 50.000 8.74 0.00 0.00 4.00
6015 6669 5.300286 CCCATTACCAAATCTGAGTTGATCC 59.700 44.000 18.42 0.00 0.00 3.36
6029 6683 6.409704 TGAGTTGATCCTTTCAGATTGTAGG 58.590 40.000 0.00 0.00 35.27 3.18
6030 6684 6.213397 TGAGTTGATCCTTTCAGATTGTAGGA 59.787 38.462 0.00 0.00 40.82 2.94
6036 6690 7.826252 TGATCCTTTCAGATTGTAGGAAAGAAG 59.174 37.037 13.29 0.67 46.48 2.85
6039 6693 6.093357 CCTTTCAGATTGTAGGAAAGAAGAGC 59.907 42.308 13.29 0.00 46.48 4.09
6041 6695 6.365970 TCAGATTGTAGGAAAGAAGAGCTT 57.634 37.500 0.00 0.00 38.88 3.74
6042 6696 6.169094 TCAGATTGTAGGAAAGAAGAGCTTG 58.831 40.000 0.00 0.00 36.80 4.01
6043 6697 4.940654 AGATTGTAGGAAAGAAGAGCTTGC 59.059 41.667 0.00 0.00 36.80 4.01
6046 6700 5.078411 TGTAGGAAAGAAGAGCTTGCTAG 57.922 43.478 0.00 0.00 36.80 3.42
6047 6701 4.528596 TGTAGGAAAGAAGAGCTTGCTAGT 59.471 41.667 0.00 0.00 36.80 2.57
6048 6702 5.715279 TGTAGGAAAGAAGAGCTTGCTAGTA 59.285 40.000 0.00 0.00 36.80 1.82
6051 6705 5.423610 AGGAAAGAAGAGCTTGCTAGTATGA 59.576 40.000 0.00 0.00 36.80 2.15
6052 6706 5.752955 GGAAAGAAGAGCTTGCTAGTATGAG 59.247 44.000 0.00 0.00 36.80 2.90
6053 6707 5.930837 AAGAAGAGCTTGCTAGTATGAGT 57.069 39.130 0.00 0.00 34.93 3.41
6054 6708 5.930837 AGAAGAGCTTGCTAGTATGAGTT 57.069 39.130 0.00 0.00 0.00 3.01
6055 6709 6.293004 AGAAGAGCTTGCTAGTATGAGTTT 57.707 37.500 0.00 0.00 0.00 2.66
6057 6711 7.164803 AGAAGAGCTTGCTAGTATGAGTTTTT 58.835 34.615 0.00 0.00 0.00 1.94
6089 6812 7.531857 TTTTTGCCTCATAATAAGTGGTTGA 57.468 32.000 0.00 0.00 0.00 3.18
6090 6813 7.716799 TTTTGCCTCATAATAAGTGGTTGAT 57.283 32.000 0.00 0.00 0.00 2.57
6092 6815 5.754782 TGCCTCATAATAAGTGGTTGATGT 58.245 37.500 0.00 0.00 0.00 3.06
6093 6816 5.589855 TGCCTCATAATAAGTGGTTGATGTG 59.410 40.000 0.00 0.00 0.00 3.21
6094 6817 5.822519 GCCTCATAATAAGTGGTTGATGTGA 59.177 40.000 0.00 0.00 0.00 3.58
6095 6818 6.488006 GCCTCATAATAAGTGGTTGATGTGAT 59.512 38.462 0.00 0.00 0.00 3.06
6096 6819 7.521099 GCCTCATAATAAGTGGTTGATGTGATG 60.521 40.741 0.00 0.00 0.00 3.07
6104 6827 2.815503 TGGTTGATGTGATGCAGAAGTG 59.184 45.455 0.00 0.00 0.00 3.16
6122 6845 6.004574 AGAAGTGGATCGAGCTGTATGTATA 58.995 40.000 0.00 0.00 0.00 1.47
6124 6847 6.201226 AGTGGATCGAGCTGTATGTATATG 57.799 41.667 0.00 0.00 0.00 1.78
6125 6848 4.800993 GTGGATCGAGCTGTATGTATATGC 59.199 45.833 0.00 0.00 0.00 3.14
6126 6849 4.142160 TGGATCGAGCTGTATGTATATGCC 60.142 45.833 0.00 0.00 0.00 4.40
6127 6850 4.142160 GGATCGAGCTGTATGTATATGCCA 60.142 45.833 0.00 0.00 0.00 4.92
6128 6851 4.174411 TCGAGCTGTATGTATATGCCAC 57.826 45.455 0.00 0.00 0.00 5.01
6129 6852 3.826729 TCGAGCTGTATGTATATGCCACT 59.173 43.478 0.00 0.00 0.00 4.00
6130 6853 5.007682 TCGAGCTGTATGTATATGCCACTA 58.992 41.667 0.00 0.00 0.00 2.74
6131 6854 5.123979 TCGAGCTGTATGTATATGCCACTAG 59.876 44.000 0.00 0.00 0.00 2.57
6132 6855 5.655488 GAGCTGTATGTATATGCCACTAGG 58.345 45.833 0.00 0.00 38.23 3.02
6133 6856 5.087323 AGCTGTATGTATATGCCACTAGGT 58.913 41.667 0.00 0.00 37.19 3.08
6134 6857 5.186021 AGCTGTATGTATATGCCACTAGGTC 59.814 44.000 0.00 0.00 37.19 3.85
6144 6867 2.042026 TGCCACTAGGTCTGGTACTGTA 59.958 50.000 0.00 0.00 37.19 2.74
6153 6876 2.163815 GTCTGGTACTGTACAGCGACAT 59.836 50.000 22.90 5.47 34.76 3.06
6235 6962 0.342665 ATTTGGGCATGGGGATGGAA 59.657 50.000 0.00 0.00 0.00 3.53
6322 7049 2.335369 CCGGATCGATCCCACGAC 59.665 66.667 33.51 12.21 44.24 4.34
6330 7057 1.139095 GATCCCACGACGTGTCCTC 59.861 63.158 25.18 14.46 0.00 3.71
6332 7059 2.783122 ATCCCACGACGTGTCCTCCT 62.783 60.000 25.18 2.54 0.00 3.69
6333 7060 1.676635 CCCACGACGTGTCCTCCTA 60.677 63.158 25.18 0.00 0.00 2.94
6344 7076 0.691078 GTCCTCCTACCCAGCCATGA 60.691 60.000 0.00 0.00 0.00 3.07
6463 7195 1.460743 CCTGTTGCTCGTGTGTATGTG 59.539 52.381 0.00 0.00 0.00 3.21
6464 7196 2.135139 CTGTTGCTCGTGTGTATGTGT 58.865 47.619 0.00 0.00 0.00 3.72
6480 7212 2.345876 TGTGTGTGTGTCTTGACACTG 58.654 47.619 27.23 0.00 45.52 3.66
6490 7222 5.030295 GTGTCTTGACACTGTTGTTGATTG 58.970 41.667 22.24 0.00 35.47 2.67
6493 7225 6.183360 TGTCTTGACACTGTTGTTGATTGTAC 60.183 38.462 0.00 0.00 35.47 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.215160 GCACGTGATTGGGATTATCATTTC 58.785 41.667 22.23 0.00 34.75 2.17
19 20 2.518949 GCAAATAGTGGCACGTGATTG 58.481 47.619 22.23 16.01 0.00 2.67
62 63 1.023513 GGCTGCAGAACTAGGCTGTG 61.024 60.000 20.43 9.68 36.63 3.66
70 71 1.228367 CCACTTGGGCTGCAGAACT 60.228 57.895 20.43 0.00 0.00 3.01
108 118 4.805192 GTCAACTTTTTGATCTGCTTTGCA 59.195 37.500 0.00 0.00 43.72 4.08
157 168 9.290483 GTCTATATACAGCATACGTACGTACTA 57.710 37.037 28.99 11.20 33.01 1.82
158 169 7.814587 TGTCTATATACAGCATACGTACGTACT 59.185 37.037 28.99 19.60 33.01 2.73
177 188 7.569639 ACGTAAAAGAGAGATGCTGTCTATA 57.430 36.000 0.00 0.00 37.29 1.31
179 190 5.899120 ACGTAAAAGAGAGATGCTGTCTA 57.101 39.130 0.00 0.00 37.29 2.59
181 192 4.799428 GGTACGTAAAAGAGAGATGCTGTC 59.201 45.833 0.00 0.00 0.00 3.51
182 193 4.463186 AGGTACGTAAAAGAGAGATGCTGT 59.537 41.667 0.00 0.00 0.00 4.40
183 194 4.800993 CAGGTACGTAAAAGAGAGATGCTG 59.199 45.833 0.00 0.00 0.00 4.41
184 195 4.678309 GCAGGTACGTAAAAGAGAGATGCT 60.678 45.833 0.00 0.00 0.00 3.79
185 196 3.552294 GCAGGTACGTAAAAGAGAGATGC 59.448 47.826 0.00 0.00 0.00 3.91
186 197 3.791887 CGCAGGTACGTAAAAGAGAGATG 59.208 47.826 0.00 0.00 0.00 2.90
187 198 3.734293 GCGCAGGTACGTAAAAGAGAGAT 60.734 47.826 0.30 0.00 34.88 2.75
188 199 2.415090 GCGCAGGTACGTAAAAGAGAGA 60.415 50.000 0.30 0.00 34.88 3.10
190 201 1.730121 CGCGCAGGTACGTAAAAGAGA 60.730 52.381 8.75 0.00 34.88 3.10
191 202 0.638746 CGCGCAGGTACGTAAAAGAG 59.361 55.000 8.75 0.00 34.88 2.85
192 203 0.240678 TCGCGCAGGTACGTAAAAGA 59.759 50.000 8.75 0.00 34.88 2.52
193 204 1.006391 CATCGCGCAGGTACGTAAAAG 60.006 52.381 8.75 0.00 34.88 2.27
223 238 0.937699 GTTTTGGCCGACCGCTTTTC 60.938 55.000 0.00 0.00 39.70 2.29
233 248 1.741770 CCTCTCCTCGTTTTGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
240 255 1.211949 CTCTCTCTCCCTCTCCTCGTT 59.788 57.143 0.00 0.00 0.00 3.85
241 256 0.837272 CTCTCTCTCCCTCTCCTCGT 59.163 60.000 0.00 0.00 0.00 4.18
242 257 1.070758 CTCTCTCTCTCCCTCTCCTCG 59.929 61.905 0.00 0.00 0.00 4.63
243 258 2.370189 CTCTCTCTCTCTCCCTCTCCTC 59.630 59.091 0.00 0.00 0.00 3.71
244 259 2.022035 TCTCTCTCTCTCTCCCTCTCCT 60.022 54.545 0.00 0.00 0.00 3.69
245 260 2.370189 CTCTCTCTCTCTCTCCCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
246 261 3.041946 ACTCTCTCTCTCTCTCCCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
247 262 3.136641 ACTCTCTCTCTCTCTCCCTCT 57.863 52.381 0.00 0.00 0.00 3.69
248 263 3.933861 AACTCTCTCTCTCTCTCCCTC 57.066 52.381 0.00 0.00 0.00 4.30
249 264 3.458487 GGTAACTCTCTCTCTCTCTCCCT 59.542 52.174 0.00 0.00 0.00 4.20
250 265 3.201266 TGGTAACTCTCTCTCTCTCTCCC 59.799 52.174 0.00 0.00 37.61 4.30
251 266 4.497291 TGGTAACTCTCTCTCTCTCTCC 57.503 50.000 0.00 0.00 37.61 3.71
252 267 4.275936 GCATGGTAACTCTCTCTCTCTCTC 59.724 50.000 0.00 0.00 37.61 3.20
253 268 4.207165 GCATGGTAACTCTCTCTCTCTCT 58.793 47.826 0.00 0.00 37.61 3.10
254 269 3.951037 TGCATGGTAACTCTCTCTCTCTC 59.049 47.826 0.00 0.00 37.61 3.20
255 270 3.974719 TGCATGGTAACTCTCTCTCTCT 58.025 45.455 0.00 0.00 37.61 3.10
256 271 4.727507 TTGCATGGTAACTCTCTCTCTC 57.272 45.455 0.00 0.00 37.61 3.20
257 272 5.489792 TTTTGCATGGTAACTCTCTCTCT 57.510 39.130 0.00 0.00 37.61 3.10
284 299 3.879892 GCAGACACTCTCTCCTTGTTTTT 59.120 43.478 0.00 0.00 0.00 1.94
285 300 3.471680 GCAGACACTCTCTCCTTGTTTT 58.528 45.455 0.00 0.00 0.00 2.43
286 301 2.546795 CGCAGACACTCTCTCCTTGTTT 60.547 50.000 0.00 0.00 0.00 2.83
287 302 1.000283 CGCAGACACTCTCTCCTTGTT 60.000 52.381 0.00 0.00 0.00 2.83
288 303 0.600557 CGCAGACACTCTCTCCTTGT 59.399 55.000 0.00 0.00 0.00 3.16
289 304 0.735632 GCGCAGACACTCTCTCCTTG 60.736 60.000 0.30 0.00 0.00 3.61
304 319 6.988522 TGAGTATAGATAAGGTAAATGCGCA 58.011 36.000 14.96 14.96 0.00 6.09
331 346 9.309516 CACACTACTACTTTTCTTCACAAGTAA 57.690 33.333 0.00 0.00 35.53 2.24
332 347 8.689061 TCACACTACTACTTTTCTTCACAAGTA 58.311 33.333 0.00 0.00 34.92 2.24
333 348 7.553334 TCACACTACTACTTTTCTTCACAAGT 58.447 34.615 0.00 0.00 37.08 3.16
334 349 8.420374 TTCACACTACTACTTTTCTTCACAAG 57.580 34.615 0.00 0.00 0.00 3.16
335 350 8.958119 ATTCACACTACTACTTTTCTTCACAA 57.042 30.769 0.00 0.00 0.00 3.33
344 359 9.623000 ACTGGTTTTTATTCACACTACTACTTT 57.377 29.630 0.00 0.00 0.00 2.66
346 361 7.597743 CGACTGGTTTTTATTCACACTACTACT 59.402 37.037 0.00 0.00 0.00 2.57
347 362 7.148689 CCGACTGGTTTTTATTCACACTACTAC 60.149 40.741 0.00 0.00 0.00 2.73
366 538 1.106944 ACACCCTTTTTGCCGACTGG 61.107 55.000 0.00 0.00 38.77 4.00
426 650 9.660180 ACAGATTTTGTTTAAACTTTAAAGGCA 57.340 25.926 19.14 5.68 36.31 4.75
438 662 9.841295 AGACCAAGTAGTACAGATTTTGTTTAA 57.159 29.630 2.52 0.00 41.29 1.52
440 664 9.841295 TTAGACCAAGTAGTACAGATTTTGTTT 57.159 29.630 2.52 0.00 41.29 2.83
441 665 9.841295 TTTAGACCAAGTAGTACAGATTTTGTT 57.159 29.630 2.52 0.00 41.29 2.83
442 666 9.841295 TTTTAGACCAAGTAGTACAGATTTTGT 57.159 29.630 2.52 0.00 43.96 2.83
475 699 8.939929 CCTGCTTTTCTTTTCTTTTCTTTTCTT 58.060 29.630 0.00 0.00 0.00 2.52
476 700 8.314021 TCCTGCTTTTCTTTTCTTTTCTTTTCT 58.686 29.630 0.00 0.00 0.00 2.52
477 701 8.383619 GTCCTGCTTTTCTTTTCTTTTCTTTTC 58.616 33.333 0.00 0.00 0.00 2.29
478 702 7.877612 TGTCCTGCTTTTCTTTTCTTTTCTTTT 59.122 29.630 0.00 0.00 0.00 2.27
479 703 7.386059 TGTCCTGCTTTTCTTTTCTTTTCTTT 58.614 30.769 0.00 0.00 0.00 2.52
480 704 6.935167 TGTCCTGCTTTTCTTTTCTTTTCTT 58.065 32.000 0.00 0.00 0.00 2.52
481 705 6.406288 CCTGTCCTGCTTTTCTTTTCTTTTCT 60.406 38.462 0.00 0.00 0.00 2.52
482 706 5.750547 CCTGTCCTGCTTTTCTTTTCTTTTC 59.249 40.000 0.00 0.00 0.00 2.29
501 725 3.004734 CCGAATATGCCCATTTTCCTGTC 59.995 47.826 6.06 0.00 0.00 3.51
503 727 2.958355 ACCGAATATGCCCATTTTCCTG 59.042 45.455 6.06 2.05 0.00 3.86
515 754 2.366266 TCCCCGTTTCCTACCGAATATG 59.634 50.000 0.00 0.00 0.00 1.78
526 765 3.247442 CGCTTTTTATTTCCCCGTTTCC 58.753 45.455 0.00 0.00 0.00 3.13
532 771 0.804544 GCCGCGCTTTTTATTTCCCC 60.805 55.000 5.56 0.00 0.00 4.81
559 800 3.126343 CACCATTTGTTTAGTAGGCGTCC 59.874 47.826 0.00 0.00 0.00 4.79
584 828 0.685097 CGGGTTTCTCTCTCCCACAA 59.315 55.000 0.00 0.00 41.12 3.33
638 905 2.967473 CTCTCGTCTCGTGGCGTGT 61.967 63.158 11.54 0.00 0.00 4.49
752 1199 4.521062 CCCTGGCTCCTCGCTTCG 62.521 72.222 0.00 0.00 39.13 3.79
786 1240 0.397957 GTTCCTCCCTCCCTCTCCTC 60.398 65.000 0.00 0.00 0.00 3.71
893 1387 4.742201 TCTCGAGCGTGGCCTTGC 62.742 66.667 7.81 8.16 0.00 4.01
894 1388 2.169789 CATCTCGAGCGTGGCCTTG 61.170 63.158 7.81 0.00 0.00 3.61
895 1389 1.888436 TTCATCTCGAGCGTGGCCTT 61.888 55.000 7.81 0.00 0.00 4.35
896 1390 2.290122 CTTCATCTCGAGCGTGGCCT 62.290 60.000 7.81 0.00 0.00 5.19
897 1391 1.880340 CTTCATCTCGAGCGTGGCC 60.880 63.158 7.81 0.00 0.00 5.36
898 1392 1.880340 CCTTCATCTCGAGCGTGGC 60.880 63.158 7.81 0.00 0.00 5.01
899 1393 0.526524 GACCTTCATCTCGAGCGTGG 60.527 60.000 7.81 7.78 0.00 4.94
900 1394 0.453793 AGACCTTCATCTCGAGCGTG 59.546 55.000 7.81 9.37 0.00 5.34
934 1428 0.317603 CTGTGTTGCTGTTGCTGCTC 60.318 55.000 0.00 0.00 40.48 4.26
942 1436 3.832237 CTCCGCCCTGTGTTGCTGT 62.832 63.158 0.00 0.00 0.00 4.40
965 1459 4.162690 CCTCCTTCCCCGCTTCCG 62.163 72.222 0.00 0.00 0.00 4.30
1191 1700 2.507102 AGCATGCCGTCGAAGTCG 60.507 61.111 15.66 0.00 39.05 4.18
1253 1762 2.496817 GAGGAACAGAGCGGCGAT 59.503 61.111 12.98 2.76 0.00 4.58
1261 1770 1.827792 TGAAAAGGGGGAGGAACAGA 58.172 50.000 0.00 0.00 0.00 3.41
1263 1772 1.856920 AGTTGAAAAGGGGGAGGAACA 59.143 47.619 0.00 0.00 0.00 3.18
1264 1773 2.239400 CAGTTGAAAAGGGGGAGGAAC 58.761 52.381 0.00 0.00 0.00 3.62
1265 1774 1.480498 GCAGTTGAAAAGGGGGAGGAA 60.480 52.381 0.00 0.00 0.00 3.36
1266 1775 0.112412 GCAGTTGAAAAGGGGGAGGA 59.888 55.000 0.00 0.00 0.00 3.71
1269 1778 0.827507 GCAGCAGTTGAAAAGGGGGA 60.828 55.000 0.00 0.00 0.00 4.81
1325 1835 3.758931 GCCAATGGCGACCAACCC 61.759 66.667 9.14 0.00 39.62 4.11
1351 1861 1.077429 GGAGGGGGTTCACATGCTC 60.077 63.158 0.00 0.00 0.00 4.26
1368 1878 2.353338 GATTAAAGGGGGAGGCCGGG 62.353 65.000 2.18 0.00 0.00 5.73
1385 1896 0.110486 AATTAATGGCGGGCGAGGAT 59.890 50.000 0.00 0.00 0.00 3.24
1388 1899 1.008538 GCAATTAATGGCGGGCGAG 60.009 57.895 0.00 0.00 0.00 5.03
1409 1920 1.950216 CTACTGGTGCTGCTCGAGATA 59.050 52.381 18.75 2.81 0.00 1.98
1415 1926 5.175856 CGAAATTATACTACTGGTGCTGCTC 59.824 44.000 0.00 0.00 0.00 4.26
1416 1927 5.050490 CGAAATTATACTACTGGTGCTGCT 58.950 41.667 0.00 0.00 0.00 4.24
1418 1929 5.175856 GCTCGAAATTATACTACTGGTGCTG 59.824 44.000 0.00 0.00 0.00 4.41
1421 1932 5.692204 CAGGCTCGAAATTATACTACTGGTG 59.308 44.000 0.00 0.00 0.00 4.17
1422 1933 5.597182 TCAGGCTCGAAATTATACTACTGGT 59.403 40.000 0.00 0.00 0.00 4.00
1423 1934 6.085555 TCAGGCTCGAAATTATACTACTGG 57.914 41.667 0.00 0.00 0.00 4.00
1439 1950 1.648467 GCCCACACGAAATCAGGCTC 61.648 60.000 0.00 0.00 37.42 4.70
1440 1951 1.675641 GCCCACACGAAATCAGGCT 60.676 57.895 0.00 0.00 37.42 4.58
1441 1952 2.877691 GCCCACACGAAATCAGGC 59.122 61.111 0.00 0.00 0.00 4.85
1442 1953 3.039202 GCGCCCACACGAAATCAGG 62.039 63.158 0.00 0.00 34.06 3.86
1443 1954 2.480555 GCGCCCACACGAAATCAG 59.519 61.111 0.00 0.00 34.06 2.90
1444 1955 3.418913 CGCGCCCACACGAAATCA 61.419 61.111 0.00 0.00 34.06 2.57
1445 1956 4.160635 CCGCGCCCACACGAAATC 62.161 66.667 0.00 0.00 34.06 2.17
1468 1979 2.621526 ACAGTTGTTGAAATCCGAACCC 59.378 45.455 0.00 0.00 0.00 4.11
1473 1984 6.019881 GGAAGAAAAACAGTTGTTGAAATCCG 60.020 38.462 0.00 0.00 38.44 4.18
1480 1991 2.529894 CGCGGAAGAAAAACAGTTGTTG 59.470 45.455 0.00 0.00 38.44 3.33
1488 1999 3.489444 GGAAGAATCGCGGAAGAAAAAC 58.511 45.455 6.13 0.00 0.00 2.43
1491 2002 1.355971 CGGAAGAATCGCGGAAGAAA 58.644 50.000 6.13 0.00 0.00 2.52
1530 2041 4.040217 AGAAATCAGGCGAGAAGATAGCAT 59.960 41.667 0.00 0.00 0.00 3.79
1544 2055 4.761739 TGTAGTTGAAGCCAAGAAATCAGG 59.238 41.667 0.00 0.00 32.06 3.86
1564 2075 6.611613 AGAGATTTGTGTGGAGAATCTGTA 57.388 37.500 2.84 0.00 39.52 2.74
1566 2077 6.171921 AGAAGAGATTTGTGTGGAGAATCTG 58.828 40.000 2.84 0.00 39.52 2.90
1579 2090 3.952323 ACATGGCATGGAGAAGAGATTTG 59.048 43.478 29.49 2.92 33.60 2.32
1599 2110 1.304052 CAGCCCCGGAAATCCAACA 60.304 57.895 0.73 0.00 35.14 3.33
1623 2135 2.044123 AGATCCGAAAATGGTGGAGC 57.956 50.000 0.00 0.00 38.45 4.70
1636 2148 8.452534 GGATACTAGTAGTTGACAATAGATCCG 58.547 40.741 8.40 0.00 0.00 4.18
1646 2158 5.563085 CGCTGGATGGATACTAGTAGTTGAC 60.563 48.000 8.40 0.00 37.61 3.18
1649 2161 4.278669 CACGCTGGATGGATACTAGTAGTT 59.721 45.833 8.40 0.00 37.61 2.24
1654 2166 1.667177 CGCACGCTGGATGGATACTAG 60.667 57.143 0.00 0.00 37.61 2.57
1658 2173 0.747852 TTACGCACGCTGGATGGATA 59.252 50.000 0.00 0.00 0.00 2.59
1825 2370 4.308526 CCACCAGATCAGTGTGGC 57.691 61.111 13.30 0.00 42.40 5.01
1839 2384 5.186198 ACTACTAGATGGCAAATTCACCAC 58.814 41.667 0.00 0.00 39.19 4.16
1889 2434 3.262405 TCGCACAAGGGGAAGTTAGTTAT 59.738 43.478 0.00 0.00 35.23 1.89
1894 2439 1.349688 ACATCGCACAAGGGGAAGTTA 59.650 47.619 0.00 0.00 42.27 2.24
1914 2459 5.546621 TGAGATTGATCTGCTCATCATCA 57.453 39.130 0.00 0.00 37.25 3.07
1915 2460 5.410132 CCTTGAGATTGATCTGCTCATCATC 59.590 44.000 11.61 1.42 38.35 2.92
1916 2461 5.163184 ACCTTGAGATTGATCTGCTCATCAT 60.163 40.000 11.61 1.51 38.35 2.45
1923 2468 4.511527 TCTTCACCTTGAGATTGATCTGC 58.488 43.478 0.00 0.00 37.25 4.26
2506 3055 2.358737 GACACCTTGCCCGAGTGG 60.359 66.667 0.00 0.00 35.79 4.00
2659 3208 1.619827 CCCTTTGCACCAACATCATGT 59.380 47.619 0.00 0.00 0.00 3.21
2710 3271 2.559668 CAATTCAGCAGGTTCCACACAT 59.440 45.455 0.00 0.00 0.00 3.21
2711 3272 1.955778 CAATTCAGCAGGTTCCACACA 59.044 47.619 0.00 0.00 0.00 3.72
2728 3289 1.069513 TGAACCTGAACCGTCGACAAT 59.930 47.619 17.16 0.00 0.00 2.71
2764 3328 2.810852 CTCTTTGTCCTTGTCAGAAGGC 59.189 50.000 0.00 0.00 37.34 4.35
2775 3339 3.490348 CCCATTGTTGACTCTTTGTCCT 58.510 45.455 0.00 0.00 44.75 3.85
2815 3379 1.043116 CACCCTCGCCTGGTAGATCA 61.043 60.000 0.00 0.00 33.84 2.92
2998 3562 3.306818 ACTCGAAGTTGAACGCTTAGAC 58.693 45.455 0.00 0.00 0.00 2.59
3103 3667 4.609691 AAACACACTTCTTACACCAACG 57.390 40.909 0.00 0.00 0.00 4.10
3302 3866 1.208052 CCTTCCTTCGATCAGCCTTCA 59.792 52.381 0.00 0.00 0.00 3.02
3442 4006 0.251165 AGGATTTGTTGTCCGGGTGG 60.251 55.000 0.00 0.00 40.76 4.61
3463 4027 5.422214 ACCTCGGACTTGTATCAGATTTT 57.578 39.130 0.00 0.00 0.00 1.82
3505 4069 1.081892 CAGCAGTGGAAGTGGAATCG 58.918 55.000 0.00 0.00 37.87 3.34
3608 4172 7.497595 TCATAACTAAACAGCCTACATACTGG 58.502 38.462 0.00 0.00 38.25 4.00
3675 4239 6.934056 ACAAAGCAATGTAGATGGCAAATAA 58.066 32.000 1.51 0.00 29.67 1.40
3682 4246 7.879070 AGCATATAACAAAGCAATGTAGATGG 58.121 34.615 0.00 0.00 32.02 3.51
3718 4282 0.883833 ATCGGCTTCCAGTTTTGCTG 59.116 50.000 0.00 0.00 44.63 4.41
3847 4411 3.479489 CAGCATACAAGGTGCCATCATA 58.521 45.455 0.00 0.00 43.50 2.15
3935 4499 8.114331 TGAGACAATATTCTCATTTTGCAAGT 57.886 30.769 0.00 0.00 45.79 3.16
4069 4637 2.587307 AGGTTTGGGGATGGAATAGCTT 59.413 45.455 0.00 0.00 0.00 3.74
4071 4639 2.175715 AGAGGTTTGGGGATGGAATAGC 59.824 50.000 0.00 0.00 0.00 2.97
4087 4655 8.718656 AGAATATTAGTCTAATTGCCAAGAGGT 58.281 33.333 10.36 0.00 37.19 3.85
4221 4790 1.672363 TCCATGAATCACAGAATGCGC 59.328 47.619 0.00 0.00 42.53 6.09
4223 4792 4.579340 ACATCTCCATGAATCACAGAATGC 59.421 41.667 0.00 0.00 34.62 3.56
4224 4793 6.694877 AACATCTCCATGAATCACAGAATG 57.305 37.500 0.00 0.00 36.44 2.67
4226 4795 8.812513 ATTTAACATCTCCATGAATCACAGAA 57.187 30.769 0.00 0.00 33.72 3.02
4280 4849 5.046591 TCTGAATATTTATACCTGGGCCTCG 60.047 44.000 4.53 0.00 0.00 4.63
4325 4894 8.862550 AAAAGAGAAAAGCAGAGTATTTGTTG 57.137 30.769 0.00 0.00 0.00 3.33
4327 4896 8.348507 CAGAAAAGAGAAAAGCAGAGTATTTGT 58.651 33.333 0.00 0.00 0.00 2.83
4451 5052 8.686334 AGCTGAAATTTTAAAAACAGAGAGACA 58.314 29.630 24.05 9.14 0.00 3.41
4456 5057 7.339953 GCACAGCTGAAATTTTAAAAACAGAG 58.660 34.615 23.35 19.39 0.00 3.35
4457 5058 6.019961 CGCACAGCTGAAATTTTAAAAACAGA 60.020 34.615 23.35 5.58 0.00 3.41
4481 5082 2.810439 TCTTTGCCAACCCAAAATCG 57.190 45.000 0.00 0.00 34.59 3.34
4520 5121 2.183478 TGTCAGTGCATGTTAGGTGG 57.817 50.000 0.00 0.00 0.00 4.61
4701 5306 1.684386 CCAGCAGCACAACCCCAAAA 61.684 55.000 0.00 0.00 0.00 2.44
4755 5362 2.748058 TTTCCTGGCCCTTCTCGCAC 62.748 60.000 0.00 0.00 0.00 5.34
4758 5365 1.746991 GCTTTCCTGGCCCTTCTCG 60.747 63.158 0.00 0.00 0.00 4.04
4760 5367 2.766660 GGCTTTCCTGGCCCTTCT 59.233 61.111 0.00 0.00 43.49 2.85
4794 5401 2.404923 TCGAGTGAGGGAGTACTCTG 57.595 55.000 21.88 3.40 40.82 3.35
4845 5452 4.631813 ACTATCTTGTTTTCGGAGCATGTC 59.368 41.667 0.00 0.00 0.00 3.06
4854 5461 6.223138 TGTGCAACTACTATCTTGTTTTCG 57.777 37.500 0.00 0.00 38.04 3.46
4857 5464 8.792830 ATGTATGTGCAACTACTATCTTGTTT 57.207 30.769 8.05 0.00 38.04 2.83
5151 5758 3.002965 CCGTTCTTACAAGTGGTGTTTCC 59.997 47.826 0.00 0.00 41.98 3.13
5157 5764 4.345859 TTCATCCGTTCTTACAAGTGGT 57.654 40.909 0.00 0.00 0.00 4.16
5160 5767 5.008316 GGTGTTTTCATCCGTTCTTACAAGT 59.992 40.000 0.00 0.00 0.00 3.16
5163 5770 3.495377 CGGTGTTTTCATCCGTTCTTACA 59.505 43.478 0.00 0.00 38.59 2.41
5173 5780 0.521735 GGACTGGCGGTGTTTTCATC 59.478 55.000 2.25 0.00 0.00 2.92
5176 5783 0.534203 TGAGGACTGGCGGTGTTTTC 60.534 55.000 2.25 0.00 0.00 2.29
5177 5784 0.110486 ATGAGGACTGGCGGTGTTTT 59.890 50.000 2.25 0.00 0.00 2.43
5181 5788 0.249120 TTACATGAGGACTGGCGGTG 59.751 55.000 2.25 0.00 0.00 4.94
5182 5789 0.981183 TTTACATGAGGACTGGCGGT 59.019 50.000 0.00 0.00 0.00 5.68
5183 5790 1.338674 TGTTTACATGAGGACTGGCGG 60.339 52.381 0.00 0.00 0.00 6.13
5185 5792 2.945668 GGATGTTTACATGAGGACTGGC 59.054 50.000 0.00 0.00 36.57 4.85
5186 5793 4.220693 TGGATGTTTACATGAGGACTGG 57.779 45.455 0.00 0.00 36.57 4.00
5188 5795 4.641989 GCAATGGATGTTTACATGAGGACT 59.358 41.667 0.00 0.00 36.57 3.85
5189 5796 4.641989 AGCAATGGATGTTTACATGAGGAC 59.358 41.667 0.00 0.00 36.57 3.85
5190 5797 4.641541 CAGCAATGGATGTTTACATGAGGA 59.358 41.667 0.00 0.00 36.57 3.71
5191 5798 4.641541 TCAGCAATGGATGTTTACATGAGG 59.358 41.667 0.00 0.00 36.57 3.86
5192 5799 5.823209 TCAGCAATGGATGTTTACATGAG 57.177 39.130 0.00 0.00 36.57 2.90
5195 5802 4.202182 GGCATCAGCAATGGATGTTTACAT 60.202 41.667 0.00 0.00 43.17 2.29
5196 5803 3.130869 GGCATCAGCAATGGATGTTTACA 59.869 43.478 0.00 0.00 43.17 2.41
5197 5804 3.130869 TGGCATCAGCAATGGATGTTTAC 59.869 43.478 0.00 0.00 43.17 2.01
5199 5806 2.093869 GTGGCATCAGCAATGGATGTTT 60.094 45.455 0.00 0.00 43.17 2.83
5202 5809 1.067060 CTGTGGCATCAGCAATGGATG 59.933 52.381 0.00 0.00 44.61 3.51
5206 5813 3.130516 AGATTTCTGTGGCATCAGCAATG 59.869 43.478 15.27 0.00 44.61 2.82
5207 5814 3.130516 CAGATTTCTGTGGCATCAGCAAT 59.869 43.478 12.05 12.05 39.83 3.56
5208 5815 2.490509 CAGATTTCTGTGGCATCAGCAA 59.509 45.455 10.87 7.96 39.83 3.91
5209 5816 2.089201 CAGATTTCTGTGGCATCAGCA 58.911 47.619 10.87 0.09 39.83 4.41
5210 5817 2.097142 GTCAGATTTCTGTGGCATCAGC 59.903 50.000 7.42 0.00 44.12 4.26
5211 5818 3.607741 AGTCAGATTTCTGTGGCATCAG 58.392 45.455 7.42 9.81 44.12 2.90
5214 5822 4.019501 AGAGAAGTCAGATTTCTGTGGCAT 60.020 41.667 12.70 0.00 44.12 4.40
5219 5827 9.050601 CAAAGTTTAGAGAAGTCAGATTTCTGT 57.949 33.333 12.70 11.17 44.12 3.41
5224 5832 7.442666 GGTCACAAAGTTTAGAGAAGTCAGATT 59.557 37.037 0.00 0.00 0.00 2.40
5234 5842 3.815401 CACCTGGGTCACAAAGTTTAGAG 59.185 47.826 0.00 0.00 0.00 2.43
5235 5843 3.815809 CACCTGGGTCACAAAGTTTAGA 58.184 45.455 0.00 0.00 0.00 2.10
5247 5855 1.673665 CAGCTTCAGCACCTGGGTC 60.674 63.158 0.75 0.00 45.16 4.46
5358 5973 0.250858 TCAGGTGGGACTGCATGTTG 60.251 55.000 0.00 0.00 38.36 3.33
5394 6009 1.888436 GCGTGTCCTCCTCATCCACA 61.888 60.000 0.00 0.00 0.00 4.17
5512 6130 0.865769 CAACTGTACAGGAACCACGC 59.134 55.000 26.12 0.00 0.00 5.34
5513 6131 0.865769 GCAACTGTACAGGAACCACG 59.134 55.000 26.12 7.72 0.00 4.94
5519 6137 1.324383 TCGTCAGCAACTGTACAGGA 58.676 50.000 26.12 10.90 32.61 3.86
5520 6138 2.370281 ATCGTCAGCAACTGTACAGG 57.630 50.000 26.12 10.99 32.61 4.00
5531 6149 5.235305 ACCAATTGACAATAATCGTCAGC 57.765 39.130 7.12 0.00 43.85 4.26
5541 6159 2.298729 CCCGTTCCAACCAATTGACAAT 59.701 45.455 7.12 0.00 38.15 2.71
5542 6160 1.683917 CCCGTTCCAACCAATTGACAA 59.316 47.619 7.12 0.00 38.15 3.18
5544 6162 1.324383 ACCCGTTCCAACCAATTGAC 58.676 50.000 7.12 0.00 38.15 3.18
5545 6163 2.953284 TACCCGTTCCAACCAATTGA 57.047 45.000 7.12 0.00 38.15 2.57
5546 6164 4.241681 CAATTACCCGTTCCAACCAATTG 58.758 43.478 0.00 0.00 35.40 2.32
5547 6165 3.306433 GCAATTACCCGTTCCAACCAATT 60.306 43.478 0.00 0.00 0.00 2.32
5548 6166 2.232696 GCAATTACCCGTTCCAACCAAT 59.767 45.455 0.00 0.00 0.00 3.16
5549 6167 1.614413 GCAATTACCCGTTCCAACCAA 59.386 47.619 0.00 0.00 0.00 3.67
5550 6168 1.202952 AGCAATTACCCGTTCCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
5551 6169 1.201414 CAGCAATTACCCGTTCCAACC 59.799 52.381 0.00 0.00 0.00 3.77
5552 6170 1.402325 GCAGCAATTACCCGTTCCAAC 60.402 52.381 0.00 0.00 0.00 3.77
5554 6172 0.250945 TGCAGCAATTACCCGTTCCA 60.251 50.000 0.00 0.00 0.00 3.53
5556 6174 1.135689 CACTGCAGCAATTACCCGTTC 60.136 52.381 15.27 0.00 0.00 3.95
5557 6175 0.881118 CACTGCAGCAATTACCCGTT 59.119 50.000 15.27 0.00 0.00 4.44
5558 6176 0.960364 CCACTGCAGCAATTACCCGT 60.960 55.000 15.27 0.00 0.00 5.28
5559 6177 0.676466 TCCACTGCAGCAATTACCCG 60.676 55.000 15.27 0.00 0.00 5.28
5560 6178 1.098050 CTCCACTGCAGCAATTACCC 58.902 55.000 15.27 0.00 0.00 3.69
5561 6179 1.098050 CCTCCACTGCAGCAATTACC 58.902 55.000 15.27 0.00 0.00 2.85
5562 6180 0.453390 GCCTCCACTGCAGCAATTAC 59.547 55.000 15.27 0.00 0.00 1.89
5563 6181 0.038021 TGCCTCCACTGCAGCAATTA 59.962 50.000 15.27 0.00 34.05 1.40
5564 6182 0.613853 ATGCCTCCACTGCAGCAATT 60.614 50.000 15.27 0.00 42.92 2.32
5565 6183 1.000019 ATGCCTCCACTGCAGCAAT 60.000 52.632 15.27 0.00 42.92 3.56
5566 6184 1.676635 GATGCCTCCACTGCAGCAA 60.677 57.895 15.27 0.00 44.20 3.91
5567 6185 2.045634 GATGCCTCCACTGCAGCA 60.046 61.111 15.27 6.00 44.20 4.41
5568 6186 1.818785 GAGATGCCTCCACTGCAGC 60.819 63.158 15.27 0.00 45.09 5.25
5569 6187 0.743701 GTGAGATGCCTCCACTGCAG 60.744 60.000 13.48 13.48 42.92 4.41
5570 6188 1.297689 GTGAGATGCCTCCACTGCA 59.702 57.895 0.00 0.00 43.97 4.41
5571 6189 1.812922 CGTGAGATGCCTCCACTGC 60.813 63.158 8.25 0.00 38.66 4.40
5572 6190 0.459237 GACGTGAGATGCCTCCACTG 60.459 60.000 0.00 5.59 38.66 3.66
5573 6191 1.608717 GGACGTGAGATGCCTCCACT 61.609 60.000 0.00 0.00 38.66 4.00
5574 6192 1.153549 GGACGTGAGATGCCTCCAC 60.154 63.158 0.00 0.00 38.66 4.02
5575 6193 2.710902 CGGACGTGAGATGCCTCCA 61.711 63.158 0.00 0.00 38.66 3.86
5576 6194 2.105128 CGGACGTGAGATGCCTCC 59.895 66.667 0.00 0.00 38.66 4.30
5577 6195 2.105128 CCGGACGTGAGATGCCTC 59.895 66.667 0.00 0.00 39.86 4.70
5578 6196 3.461773 CCCGGACGTGAGATGCCT 61.462 66.667 0.73 0.00 0.00 4.75
5579 6197 4.530857 CCCCGGACGTGAGATGCC 62.531 72.222 0.73 0.00 0.00 4.40
5580 6198 4.530857 CCCCCGGACGTGAGATGC 62.531 72.222 0.73 0.00 0.00 3.91
5581 6199 2.758327 TCCCCCGGACGTGAGATG 60.758 66.667 0.73 0.00 0.00 2.90
5582 6200 2.299727 ATCTCCCCCGGACGTGAGAT 62.300 60.000 0.73 10.89 39.21 2.75
5583 6201 2.509931 AATCTCCCCCGGACGTGAGA 62.510 60.000 0.73 8.86 38.17 3.27
5584 6202 2.017559 GAATCTCCCCCGGACGTGAG 62.018 65.000 0.73 2.86 0.00 3.51
5585 6203 2.038329 AATCTCCCCCGGACGTGA 59.962 61.111 0.73 0.00 0.00 4.35
5586 6204 1.614241 AAGAATCTCCCCCGGACGTG 61.614 60.000 0.73 0.00 0.00 4.49
5587 6205 0.908180 AAAGAATCTCCCCCGGACGT 60.908 55.000 0.73 0.00 0.00 4.34
5588 6206 0.462047 CAAAGAATCTCCCCCGGACG 60.462 60.000 0.73 0.00 0.00 4.79
5589 6207 0.107165 CCAAAGAATCTCCCCCGGAC 60.107 60.000 0.73 0.00 0.00 4.79
5590 6208 0.549169 ACCAAAGAATCTCCCCCGGA 60.549 55.000 0.73 0.00 0.00 5.14
5591 6209 0.394352 CACCAAAGAATCTCCCCCGG 60.394 60.000 0.00 0.00 0.00 5.73
5592 6210 0.394352 CCACCAAAGAATCTCCCCCG 60.394 60.000 0.00 0.00 0.00 5.73
5593 6211 0.033109 CCCACCAAAGAATCTCCCCC 60.033 60.000 0.00 0.00 0.00 5.40
5643 6262 1.691196 CCAAGCACCCACTCAAGAAA 58.309 50.000 0.00 0.00 0.00 2.52
5669 6288 2.084610 TACACACATGAGCTGAGCAC 57.915 50.000 7.39 0.00 0.00 4.40
5675 6294 3.495629 CCCTGCATATACACACATGAGCT 60.496 47.826 0.00 0.00 0.00 4.09
5688 6307 3.324268 CAGACATCACTCTCCCTGCATAT 59.676 47.826 0.00 0.00 0.00 1.78
5690 6309 1.485480 CAGACATCACTCTCCCTGCAT 59.515 52.381 0.00 0.00 0.00 3.96
5702 6329 2.224597 ACAGCAACACCATCAGACATCA 60.225 45.455 0.00 0.00 0.00 3.07
5714 6341 6.529463 AATTCAAATTAGCAACAGCAACAC 57.471 33.333 0.00 0.00 0.00 3.32
5720 6347 9.132521 CAACTTCCTAATTCAAATTAGCAACAG 57.867 33.333 14.40 10.02 44.07 3.16
5723 6350 7.895759 AGCAACTTCCTAATTCAAATTAGCAA 58.104 30.769 14.40 7.55 44.07 3.91
5732 6359 7.817418 ACTACAAAAGCAACTTCCTAATTCA 57.183 32.000 0.00 0.00 0.00 2.57
5733 6360 9.529325 AAAACTACAAAAGCAACTTCCTAATTC 57.471 29.630 0.00 0.00 0.00 2.17
5735 6362 8.474831 ACAAAACTACAAAAGCAACTTCCTAAT 58.525 29.630 0.00 0.00 0.00 1.73
5737 6364 7.399245 ACAAAACTACAAAAGCAACTTCCTA 57.601 32.000 0.00 0.00 0.00 2.94
5739 6366 7.255569 ACTACAAAACTACAAAAGCAACTTCC 58.744 34.615 0.00 0.00 0.00 3.46
5740 6367 9.434559 CTACTACAAAACTACAAAAGCAACTTC 57.565 33.333 0.00 0.00 0.00 3.01
5741 6368 7.913821 GCTACTACAAAACTACAAAAGCAACTT 59.086 33.333 0.00 0.00 0.00 2.66
5782 6412 3.567478 AGGCCAGCAAAGGTTAGATAG 57.433 47.619 5.01 0.00 0.00 2.08
5783 6413 3.620488 CAAGGCCAGCAAAGGTTAGATA 58.380 45.455 5.01 0.00 0.00 1.98
5784 6414 2.450476 CAAGGCCAGCAAAGGTTAGAT 58.550 47.619 5.01 0.00 0.00 1.98
5785 6415 1.547675 CCAAGGCCAGCAAAGGTTAGA 60.548 52.381 5.01 0.00 0.00 2.10
5806 6436 5.048504 CCATAATCGTAGAATGCTTTGCCAT 60.049 40.000 0.00 0.00 43.58 4.40
5812 6442 6.992123 TCATTCACCATAATCGTAGAATGCTT 59.008 34.615 0.00 0.00 43.58 3.91
5814 6444 6.785488 TCATTCACCATAATCGTAGAATGC 57.215 37.500 0.00 0.00 43.58 3.56
5830 6460 5.418840 ACCAGGAAACCATACATTCATTCAC 59.581 40.000 0.00 0.00 0.00 3.18
5831 6461 5.418524 CACCAGGAAACCATACATTCATTCA 59.581 40.000 0.00 0.00 0.00 2.57
5850 6480 5.220989 CCAATCTACAATCTTGATGCACCAG 60.221 44.000 0.00 0.00 0.00 4.00
5867 6497 6.403866 ACACAAAAGCAACAATCCAATCTA 57.596 33.333 0.00 0.00 0.00 1.98
5869 6499 5.740406 CAACACAAAAGCAACAATCCAATC 58.260 37.500 0.00 0.00 0.00 2.67
5870 6500 4.035441 GCAACACAAAAGCAACAATCCAAT 59.965 37.500 0.00 0.00 0.00 3.16
5871 6501 3.373439 GCAACACAAAAGCAACAATCCAA 59.627 39.130 0.00 0.00 0.00 3.53
5872 6502 2.935201 GCAACACAAAAGCAACAATCCA 59.065 40.909 0.00 0.00 0.00 3.41
5873 6503 3.001533 CAGCAACACAAAAGCAACAATCC 59.998 43.478 0.00 0.00 0.00 3.01
5874 6504 3.618150 ACAGCAACACAAAAGCAACAATC 59.382 39.130 0.00 0.00 0.00 2.67
5875 6505 3.598299 ACAGCAACACAAAAGCAACAAT 58.402 36.364 0.00 0.00 0.00 2.71
5876 6506 2.992543 GACAGCAACACAAAAGCAACAA 59.007 40.909 0.00 0.00 0.00 2.83
5878 6522 2.854185 GAGACAGCAACACAAAAGCAAC 59.146 45.455 0.00 0.00 0.00 4.17
5892 6536 2.037620 ATGGCATCCGAGGAGACAGC 62.038 60.000 0.00 0.00 0.00 4.40
5895 6539 0.755686 AAGATGGCATCCGAGGAGAC 59.244 55.000 23.33 0.00 0.00 3.36
5902 6553 2.947652 AGATTGTTCAAGATGGCATCCG 59.052 45.455 23.33 15.12 0.00 4.18
5923 6574 7.490657 AAACAGTACCTGAATGATAGTGGTA 57.509 36.000 0.00 0.00 35.18 3.25
5924 6575 6.374417 AAACAGTACCTGAATGATAGTGGT 57.626 37.500 0.00 0.00 35.18 4.16
5925 6576 7.822334 TGTAAAACAGTACCTGAATGATAGTGG 59.178 37.037 0.00 0.00 35.18 4.00
5928 6579 7.011482 GCCTGTAAAACAGTACCTGAATGATAG 59.989 40.741 6.33 0.00 44.50 2.08
5929 6580 6.821665 GCCTGTAAAACAGTACCTGAATGATA 59.178 38.462 6.33 0.00 44.50 2.15
5930 6581 5.648092 GCCTGTAAAACAGTACCTGAATGAT 59.352 40.000 6.33 0.00 44.50 2.45
5931 6582 5.001232 GCCTGTAAAACAGTACCTGAATGA 58.999 41.667 6.33 0.00 44.50 2.57
5932 6583 5.003804 AGCCTGTAAAACAGTACCTGAATG 58.996 41.667 6.33 0.00 44.50 2.67
5940 6591 4.758165 GCCTGTAAAGCCTGTAAAACAGTA 59.242 41.667 6.33 0.00 44.50 2.74
5948 6599 1.821216 GCTTGCCTGTAAAGCCTGTA 58.179 50.000 0.00 0.00 43.45 2.74
5949 6600 2.646121 GCTTGCCTGTAAAGCCTGT 58.354 52.632 0.00 0.00 43.45 4.00
5955 6606 0.609131 GGCTCCTGCTTGCCTGTAAA 60.609 55.000 0.00 0.00 45.26 2.01
5957 6608 2.671070 GGCTCCTGCTTGCCTGTA 59.329 61.111 0.00 0.00 45.26 2.74
5962 6613 1.744741 GTCAGAGGCTCCTGCTTGC 60.745 63.158 11.71 0.00 39.59 4.01
5964 6615 0.835543 ACTGTCAGAGGCTCCTGCTT 60.836 55.000 11.71 0.00 39.59 3.91
5965 6616 1.229145 ACTGTCAGAGGCTCCTGCT 60.229 57.895 11.71 0.00 39.59 4.24
5966 6617 1.079266 CACTGTCAGAGGCTCCTGC 60.079 63.158 11.71 1.77 34.28 4.85
5967 6618 0.972134 TTCACTGTCAGAGGCTCCTG 59.028 55.000 11.71 9.11 35.55 3.86
5968 6619 1.265236 CTTCACTGTCAGAGGCTCCT 58.735 55.000 11.71 0.00 0.00 3.69
5969 6620 0.248843 CCTTCACTGTCAGAGGCTCC 59.751 60.000 11.71 0.00 0.00 4.70
5970 6621 0.972883 ACCTTCACTGTCAGAGGCTC 59.027 55.000 6.34 6.34 0.00 4.70
5971 6622 1.896465 GTACCTTCACTGTCAGAGGCT 59.104 52.381 6.91 0.00 0.00 4.58
5972 6623 1.066787 GGTACCTTCACTGTCAGAGGC 60.067 57.143 6.91 0.00 0.00 4.70
5988 6639 6.177610 TCAACTCAGATTTGGTAATGGGTAC 58.822 40.000 0.92 0.00 0.00 3.34
5989 6640 6.381498 TCAACTCAGATTTGGTAATGGGTA 57.619 37.500 0.92 0.00 0.00 3.69
5990 6641 5.255397 TCAACTCAGATTTGGTAATGGGT 57.745 39.130 0.92 0.00 0.00 4.51
5991 6642 5.300286 GGATCAACTCAGATTTGGTAATGGG 59.700 44.000 0.92 0.00 0.00 4.00
5992 6643 6.125029 AGGATCAACTCAGATTTGGTAATGG 58.875 40.000 0.92 0.00 0.00 3.16
5993 6644 7.636150 AAGGATCAACTCAGATTTGGTAATG 57.364 36.000 0.92 0.00 0.00 1.90
5994 6645 7.890127 TGAAAGGATCAACTCAGATTTGGTAAT 59.110 33.333 0.92 0.00 34.30 1.89
5995 6646 7.230747 TGAAAGGATCAACTCAGATTTGGTAA 58.769 34.615 0.92 0.00 34.30 2.85
6015 6669 6.878389 AGCTCTTCTTTCCTACAATCTGAAAG 59.122 38.462 0.00 0.00 43.93 2.62
6023 6677 4.357918 AGCAAGCTCTTCTTTCCTACAA 57.642 40.909 0.00 0.00 31.27 2.41
6029 6683 6.337356 ACTCATACTAGCAAGCTCTTCTTTC 58.663 40.000 0.00 0.00 31.27 2.62
6030 6684 6.293004 ACTCATACTAGCAAGCTCTTCTTT 57.707 37.500 0.00 0.00 31.27 2.52
6069 6792 5.589855 CACATCAACCACTTATTATGAGGCA 59.410 40.000 0.00 0.00 0.00 4.75
6074 6797 7.012610 TCTGCATCACATCAACCACTTATTATG 59.987 37.037 0.00 0.00 0.00 1.90
6082 6805 2.816087 ACTTCTGCATCACATCAACCAC 59.184 45.455 0.00 0.00 0.00 4.16
6083 6806 2.815503 CACTTCTGCATCACATCAACCA 59.184 45.455 0.00 0.00 0.00 3.67
6085 6808 3.076621 TCCACTTCTGCATCACATCAAC 58.923 45.455 0.00 0.00 0.00 3.18
6086 6809 3.421919 TCCACTTCTGCATCACATCAA 57.578 42.857 0.00 0.00 0.00 2.57
6087 6810 3.538591 GATCCACTTCTGCATCACATCA 58.461 45.455 0.00 0.00 0.00 3.07
6089 6812 2.169144 TCGATCCACTTCTGCATCACAT 59.831 45.455 0.00 0.00 0.00 3.21
6090 6813 1.550072 TCGATCCACTTCTGCATCACA 59.450 47.619 0.00 0.00 0.00 3.58
6092 6815 1.472201 GCTCGATCCACTTCTGCATCA 60.472 52.381 0.00 0.00 0.00 3.07
6093 6816 1.202510 AGCTCGATCCACTTCTGCATC 60.203 52.381 0.00 0.00 0.00 3.91
6094 6817 0.829333 AGCTCGATCCACTTCTGCAT 59.171 50.000 0.00 0.00 0.00 3.96
6095 6818 0.108472 CAGCTCGATCCACTTCTGCA 60.108 55.000 0.00 0.00 0.00 4.41
6096 6819 0.108424 ACAGCTCGATCCACTTCTGC 60.108 55.000 0.00 0.00 0.00 4.26
6104 6827 4.142160 TGGCATATACATACAGCTCGATCC 60.142 45.833 0.00 0.00 0.00 3.36
6122 6845 2.111384 CAGTACCAGACCTAGTGGCAT 58.889 52.381 0.00 0.00 38.83 4.40
6124 6847 1.558233 ACAGTACCAGACCTAGTGGC 58.442 55.000 0.00 0.00 38.83 5.01
6125 6848 3.693807 TGTACAGTACCAGACCTAGTGG 58.306 50.000 8.30 0.00 41.30 4.00
6126 6849 3.128938 GCTGTACAGTACCAGACCTAGTG 59.871 52.174 23.44 0.00 0.00 2.74
6127 6850 3.354467 GCTGTACAGTACCAGACCTAGT 58.646 50.000 23.44 0.00 0.00 2.57
6128 6851 2.355132 CGCTGTACAGTACCAGACCTAG 59.645 54.545 23.44 0.00 0.00 3.02
6129 6852 2.026915 TCGCTGTACAGTACCAGACCTA 60.027 50.000 23.44 0.00 0.00 3.08
6130 6853 1.174783 CGCTGTACAGTACCAGACCT 58.825 55.000 23.44 0.00 0.00 3.85
6131 6854 1.135460 GTCGCTGTACAGTACCAGACC 60.135 57.143 23.44 3.95 0.00 3.85
6132 6855 1.538512 TGTCGCTGTACAGTACCAGAC 59.461 52.381 23.44 21.36 0.00 3.51
6133 6856 1.900245 TGTCGCTGTACAGTACCAGA 58.100 50.000 23.44 12.46 0.00 3.86
6134 6857 2.163613 TCATGTCGCTGTACAGTACCAG 59.836 50.000 23.44 15.46 31.70 4.00
6144 6867 2.138320 CACAGTTTCTCATGTCGCTGT 58.862 47.619 0.00 0.00 37.63 4.40
6153 6876 1.134128 TCAAGCAGCCACAGTTTCTCA 60.134 47.619 0.00 0.00 0.00 3.27
6235 6962 1.537889 TCTGGTGTCCCCGTTCCAT 60.538 57.895 0.00 0.00 35.15 3.41
6322 7049 2.722201 GGCTGGGTAGGAGGACACG 61.722 68.421 0.00 0.00 0.00 4.49
6330 7057 0.620556 AGTGTTCATGGCTGGGTAGG 59.379 55.000 0.00 0.00 0.00 3.18
6332 7059 1.003118 GTCAGTGTTCATGGCTGGGTA 59.997 52.381 0.00 0.00 0.00 3.69
6333 7060 0.250901 GTCAGTGTTCATGGCTGGGT 60.251 55.000 0.00 0.00 0.00 4.51
6344 7076 3.354678 GGCAATGCCGTCAGTGTT 58.645 55.556 9.14 0.00 39.62 3.32
6382 7114 3.781307 TCATCAACCCCGGCCGAG 61.781 66.667 30.73 20.57 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.