Multiple sequence alignment - TraesCS5B01G519800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G519800 | chr5B | 100.000 | 2549 | 0 | 0 | 1 | 2549 | 682396564 | 682394016 | 0.000000e+00 | 4708 |
1 | TraesCS5B01G519800 | chr5B | 96.774 | 1705 | 49 | 5 | 569 | 2270 | 81902666 | 81904367 | 0.000000e+00 | 2839 |
2 | TraesCS5B01G519800 | chr1B | 97.181 | 1703 | 46 | 2 | 569 | 2270 | 307939705 | 307941406 | 0.000000e+00 | 2878 |
3 | TraesCS5B01G519800 | chr1B | 97.011 | 1706 | 49 | 2 | 566 | 2270 | 616703969 | 616702265 | 0.000000e+00 | 2867 |
4 | TraesCS5B01G519800 | chr1B | 95.753 | 1719 | 67 | 5 | 554 | 2270 | 561526116 | 561527830 | 0.000000e+00 | 2765 |
5 | TraesCS5B01G519800 | chr1B | 95.736 | 1712 | 65 | 6 | 563 | 2270 | 581717566 | 581715859 | 0.000000e+00 | 2750 |
6 | TraesCS5B01G519800 | chr1B | 95.785 | 1708 | 63 | 7 | 564 | 2267 | 671392205 | 671393907 | 0.000000e+00 | 2747 |
7 | TraesCS5B01G519800 | chr1B | 98.282 | 291 | 3 | 2 | 2257 | 2547 | 645696050 | 645695762 | 2.260000e-140 | 508 |
8 | TraesCS5B01G519800 | chr1B | 97.952 | 293 | 4 | 2 | 2255 | 2547 | 288522958 | 288522668 | 8.140000e-140 | 507 |
9 | TraesCS5B01G519800 | chr2B | 96.838 | 1708 | 50 | 4 | 566 | 2270 | 776161410 | 776163116 | 0.000000e+00 | 2852 |
10 | TraesCS5B01G519800 | chr2B | 95.733 | 1711 | 65 | 6 | 564 | 2270 | 692955891 | 692957597 | 0.000000e+00 | 2748 |
11 | TraesCS5B01G519800 | chr3B | 95.833 | 1704 | 68 | 2 | 568 | 2270 | 46395681 | 46393980 | 0.000000e+00 | 2750 |
12 | TraesCS5B01G519800 | chr3B | 97.324 | 299 | 5 | 2 | 2251 | 2549 | 562524430 | 562524135 | 2.930000e-139 | 505 |
13 | TraesCS5B01G519800 | chr5D | 97.163 | 423 | 5 | 2 | 8 | 429 | 540061610 | 540061194 | 0.000000e+00 | 708 |
14 | TraesCS5B01G519800 | chr5D | 96.690 | 423 | 7 | 2 | 8 | 429 | 540050633 | 540050217 | 0.000000e+00 | 697 |
15 | TraesCS5B01G519800 | chr5D | 97.297 | 148 | 3 | 1 | 421 | 568 | 540043290 | 540043144 | 1.510000e-62 | 250 |
16 | TraesCS5B01G519800 | chr5D | 97.297 | 148 | 3 | 1 | 421 | 568 | 540055977 | 540055831 | 1.510000e-62 | 250 |
17 | TraesCS5B01G519800 | chr5D | 97.297 | 148 | 3 | 1 | 421 | 568 | 540069921 | 540069775 | 1.510000e-62 | 250 |
18 | TraesCS5B01G519800 | chr5D | 97.297 | 148 | 3 | 1 | 421 | 568 | 540074430 | 540074284 | 1.510000e-62 | 250 |
19 | TraesCS5B01G519800 | chr4A | 83.392 | 572 | 76 | 11 | 4 | 568 | 628002918 | 628002359 | 1.750000e-141 | 512 |
20 | TraesCS5B01G519800 | chr3A | 98.955 | 287 | 2 | 1 | 2263 | 2549 | 260312455 | 260312740 | 1.750000e-141 | 512 |
21 | TraesCS5B01G519800 | chr3A | 97.635 | 296 | 6 | 1 | 2253 | 2547 | 12298975 | 12299270 | 8.140000e-140 | 507 |
22 | TraesCS5B01G519800 | chr4B | 98.288 | 292 | 3 | 1 | 2258 | 2549 | 182270040 | 182269751 | 6.290000e-141 | 510 |
23 | TraesCS5B01G519800 | chr7B | 98.282 | 291 | 3 | 2 | 2257 | 2547 | 635723069 | 635723357 | 2.260000e-140 | 508 |
24 | TraesCS5B01G519800 | chr1A | 98.282 | 291 | 4 | 1 | 2258 | 2548 | 94234652 | 94234363 | 2.260000e-140 | 508 |
25 | TraesCS5B01G519800 | chrUn | 99.283 | 279 | 2 | 0 | 2269 | 2547 | 180731224 | 180731502 | 2.930000e-139 | 505 |
26 | TraesCS5B01G519800 | chrUn | 97.297 | 148 | 3 | 1 | 421 | 568 | 311747638 | 311747492 | 1.510000e-62 | 250 |
27 | TraesCS5B01G519800 | chr5A | 90.625 | 320 | 16 | 12 | 2230 | 2546 | 503116744 | 503116436 | 1.820000e-111 | 412 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G519800 | chr5B | 682394016 | 682396564 | 2548 | True | 4708 | 4708 | 100.000 | 1 | 2549 | 1 | chr5B.!!$R1 | 2548 |
1 | TraesCS5B01G519800 | chr5B | 81902666 | 81904367 | 1701 | False | 2839 | 2839 | 96.774 | 569 | 2270 | 1 | chr5B.!!$F1 | 1701 |
2 | TraesCS5B01G519800 | chr1B | 307939705 | 307941406 | 1701 | False | 2878 | 2878 | 97.181 | 569 | 2270 | 1 | chr1B.!!$F1 | 1701 |
3 | TraesCS5B01G519800 | chr1B | 616702265 | 616703969 | 1704 | True | 2867 | 2867 | 97.011 | 566 | 2270 | 1 | chr1B.!!$R3 | 1704 |
4 | TraesCS5B01G519800 | chr1B | 561526116 | 561527830 | 1714 | False | 2765 | 2765 | 95.753 | 554 | 2270 | 1 | chr1B.!!$F2 | 1716 |
5 | TraesCS5B01G519800 | chr1B | 581715859 | 581717566 | 1707 | True | 2750 | 2750 | 95.736 | 563 | 2270 | 1 | chr1B.!!$R2 | 1707 |
6 | TraesCS5B01G519800 | chr1B | 671392205 | 671393907 | 1702 | False | 2747 | 2747 | 95.785 | 564 | 2267 | 1 | chr1B.!!$F3 | 1703 |
7 | TraesCS5B01G519800 | chr2B | 776161410 | 776163116 | 1706 | False | 2852 | 2852 | 96.838 | 566 | 2270 | 1 | chr2B.!!$F2 | 1704 |
8 | TraesCS5B01G519800 | chr2B | 692955891 | 692957597 | 1706 | False | 2748 | 2748 | 95.733 | 564 | 2270 | 1 | chr2B.!!$F1 | 1706 |
9 | TraesCS5B01G519800 | chr3B | 46393980 | 46395681 | 1701 | True | 2750 | 2750 | 95.833 | 568 | 2270 | 1 | chr3B.!!$R1 | 1702 |
10 | TraesCS5B01G519800 | chr4A | 628002359 | 628002918 | 559 | True | 512 | 512 | 83.392 | 4 | 568 | 1 | chr4A.!!$R1 | 564 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
265 | 271 | 0.034089 | GGGCCAAGGTGCTAGTTCAT | 60.034 | 55.0 | 4.39 | 0.0 | 0.00 | 2.57 | F |
692 | 698 | 0.179234 | TGTGAACTTTGGCGTCTCCA | 59.821 | 50.0 | 0.00 | 0.0 | 44.85 | 3.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1363 | 1371 | 1.573108 | TCGCCCTCCATCTCTTCTTT | 58.427 | 50.0 | 0.0 | 0.0 | 0.0 | 2.52 | R |
2459 | 2484 | 1.367346 | TGTCCATAGCCAGGAAACCA | 58.633 | 50.0 | 0.0 | 0.0 | 36.8 | 3.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 5.903764 | TTTGCATCATGTAAAGCAACAAC | 57.096 | 34.783 | 13.40 | 0.00 | 45.53 | 3.32 |
35 | 36 | 6.314648 | TGCATCATGTAAAGCAACAACAAAAA | 59.685 | 30.769 | 0.00 | 0.00 | 33.48 | 1.94 |
36 | 37 | 6.847289 | GCATCATGTAAAGCAACAACAAAAAG | 59.153 | 34.615 | 0.00 | 0.00 | 32.02 | 2.27 |
37 | 38 | 7.254387 | GCATCATGTAAAGCAACAACAAAAAGA | 60.254 | 33.333 | 0.00 | 0.00 | 32.02 | 2.52 |
71 | 74 | 1.613437 | ACAAACCTTGAGGGCATTTCG | 59.387 | 47.619 | 1.54 | 0.00 | 40.27 | 3.46 |
72 | 75 | 0.603065 | AAACCTTGAGGGCATTTCGC | 59.397 | 50.000 | 1.54 | 0.00 | 40.27 | 4.70 |
104 | 107 | 1.799994 | TGTGAGTCATGCATGTTGACG | 59.200 | 47.619 | 25.43 | 0.00 | 46.39 | 4.35 |
106 | 109 | 2.224079 | GTGAGTCATGCATGTTGACGTT | 59.776 | 45.455 | 25.43 | 3.61 | 46.39 | 3.99 |
109 | 112 | 2.224079 | AGTCATGCATGTTGACGTTGAC | 59.776 | 45.455 | 25.43 | 14.08 | 46.39 | 3.18 |
110 | 113 | 1.194322 | TCATGCATGTTGACGTTGACG | 59.806 | 47.619 | 25.43 | 1.41 | 46.33 | 4.35 |
136 | 139 | 5.558463 | CGACGTCGATGTCATAGTCAATAGT | 60.558 | 44.000 | 33.35 | 0.00 | 43.02 | 2.12 |
140 | 143 | 6.273825 | GTCGATGTCATAGTCAATAGTGGTT | 58.726 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
141 | 144 | 6.199154 | GTCGATGTCATAGTCAATAGTGGTTG | 59.801 | 42.308 | 0.00 | 0.00 | 0.00 | 3.77 |
152 | 155 | 0.816018 | TAGTGGTTGCCGTTGTGGTG | 60.816 | 55.000 | 0.00 | 0.00 | 41.21 | 4.17 |
154 | 157 | 2.831284 | GGTTGCCGTTGTGGTGGT | 60.831 | 61.111 | 0.00 | 0.00 | 41.21 | 4.16 |
161 | 164 | 1.591504 | CCGTTGTGGTGGTAATGGGC | 61.592 | 60.000 | 0.00 | 0.00 | 30.89 | 5.36 |
162 | 165 | 1.591504 | CGTTGTGGTGGTAATGGGCC | 61.592 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
179 | 182 | 2.423538 | GGGCCGTGGCATAATATGAATC | 59.576 | 50.000 | 13.76 | 0.00 | 44.11 | 2.52 |
183 | 186 | 5.414454 | GGCCGTGGCATAATATGAATCTTTA | 59.586 | 40.000 | 13.76 | 0.00 | 44.11 | 1.85 |
249 | 255 | 6.534634 | AGTATGACCTCATAATTACAAGGGC | 58.465 | 40.000 | 15.86 | 14.11 | 40.18 | 5.19 |
252 | 258 | 4.017958 | TGACCTCATAATTACAAGGGCCAA | 60.018 | 41.667 | 15.21 | 0.00 | 35.95 | 4.52 |
253 | 259 | 4.536765 | ACCTCATAATTACAAGGGCCAAG | 58.463 | 43.478 | 6.18 | 0.00 | 32.97 | 3.61 |
256 | 262 | 4.277476 | TCATAATTACAAGGGCCAAGGTG | 58.723 | 43.478 | 6.18 | 0.03 | 0.00 | 4.00 |
264 | 270 | 1.133809 | AGGGCCAAGGTGCTAGTTCA | 61.134 | 55.000 | 6.18 | 0.00 | 0.00 | 3.18 |
265 | 271 | 0.034089 | GGGCCAAGGTGCTAGTTCAT | 60.034 | 55.000 | 4.39 | 0.00 | 0.00 | 2.57 |
266 | 272 | 1.616994 | GGGCCAAGGTGCTAGTTCATT | 60.617 | 52.381 | 4.39 | 0.00 | 0.00 | 2.57 |
267 | 273 | 2.356741 | GGGCCAAGGTGCTAGTTCATTA | 60.357 | 50.000 | 4.39 | 0.00 | 0.00 | 1.90 |
268 | 274 | 3.555966 | GGCCAAGGTGCTAGTTCATTAT | 58.444 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
269 | 275 | 3.954258 | GGCCAAGGTGCTAGTTCATTATT | 59.046 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
298 | 304 | 4.520492 | TCAAATGTCTTTTCTCCTGGAAGC | 59.480 | 41.667 | 0.00 | 0.00 | 35.16 | 3.86 |
308 | 314 | 8.055181 | TCTTTTCTCCTGGAAGCACATTTATAT | 58.945 | 33.333 | 0.00 | 0.00 | 35.16 | 0.86 |
314 | 320 | 8.262601 | TCCTGGAAGCACATTTATATAGAGAA | 57.737 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
316 | 322 | 7.933577 | CCTGGAAGCACATTTATATAGAGAACA | 59.066 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
401 | 407 | 1.549203 | ATCAAATGGTGTGGAGGCAC | 58.451 | 50.000 | 0.00 | 0.00 | 38.56 | 5.01 |
423 | 429 | 4.705991 | ACGTTAGGCCCTAAGAGATATAGC | 59.294 | 45.833 | 2.67 | 0.00 | 0.00 | 2.97 |
454 | 460 | 5.240403 | TGCACATGTTACATTTGCAGAGTAA | 59.760 | 36.000 | 28.29 | 10.53 | 38.25 | 2.24 |
455 | 461 | 5.569059 | GCACATGTTACATTTGCAGAGTAAC | 59.431 | 40.000 | 25.64 | 21.46 | 44.72 | 2.50 |
456 | 462 | 6.568462 | GCACATGTTACATTTGCAGAGTAACT | 60.568 | 38.462 | 25.64 | 15.26 | 44.75 | 2.24 |
466 | 472 | 7.435488 | ACATTTGCAGAGTAACTATTACTAGCG | 59.565 | 37.037 | 15.27 | 7.98 | 46.01 | 4.26 |
468 | 474 | 6.301687 | TGCAGAGTAACTATTACTAGCGAG | 57.698 | 41.667 | 15.27 | 0.00 | 46.01 | 5.03 |
472 | 478 | 7.171337 | GCAGAGTAACTATTACTAGCGAGTACT | 59.829 | 40.741 | 6.15 | 4.19 | 46.01 | 2.73 |
473 | 479 | 8.702438 | CAGAGTAACTATTACTAGCGAGTACTC | 58.298 | 40.741 | 13.18 | 13.18 | 46.01 | 2.59 |
481 | 487 | 9.828852 | CTATTACTAGCGAGTACTCTTAAATGG | 57.171 | 37.037 | 20.34 | 9.34 | 37.91 | 3.16 |
488 | 494 | 4.508124 | CGAGTACTCTTAAATGGTGGCATC | 59.492 | 45.833 | 20.34 | 0.00 | 0.00 | 3.91 |
490 | 496 | 5.675538 | AGTACTCTTAAATGGTGGCATCTC | 58.324 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
493 | 499 | 6.506538 | ACTCTTAAATGGTGGCATCTCTAT | 57.493 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
503 | 509 | 6.763355 | TGGTGGCATCTCTATTCTCTTTATC | 58.237 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
518 | 524 | 9.956640 | ATTCTCTTTATCTTTTCTCAGATGTGT | 57.043 | 29.630 | 0.00 | 0.00 | 35.08 | 3.72 |
528 | 534 | 1.925185 | CTCAGATGTGTCACATGCTCG | 59.075 | 52.381 | 23.08 | 12.95 | 39.27 | 5.03 |
533 | 539 | 2.743538 | TGTCACATGCTCGCTGGC | 60.744 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
547 | 553 | 2.060567 | GCTGGCTGCCCCATCTATGA | 62.061 | 60.000 | 17.53 | 0.00 | 44.33 | 2.15 |
553 | 559 | 1.071471 | GCCCCATCTATGACCACGG | 59.929 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
560 | 566 | 3.889538 | CCATCTATGACCACGGTAGAGAA | 59.110 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
562 | 568 | 5.011125 | CCATCTATGACCACGGTAGAGAAAT | 59.989 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
590 | 596 | 4.962362 | AGGGTTAATTATCCTTTTGCCCTG | 59.038 | 41.667 | 11.51 | 0.00 | 41.90 | 4.45 |
692 | 698 | 0.179234 | TGTGAACTTTGGCGTCTCCA | 59.821 | 50.000 | 0.00 | 0.00 | 44.85 | 3.86 |
721 | 727 | 1.002773 | ACGTTTTGACTCGGCCCTTAT | 59.997 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
764 | 770 | 2.481276 | GCGGCCAATTTTATTCAGACCC | 60.481 | 50.000 | 2.24 | 0.00 | 0.00 | 4.46 |
1267 | 1275 | 4.280436 | TGCTTCTTTCTTTGGGTCGATA | 57.720 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
1313 | 1321 | 1.989966 | CTGCAAGAAGAGCATGGCGG | 61.990 | 60.000 | 0.00 | 0.00 | 41.82 | 6.13 |
1321 | 1329 | 1.750399 | GAGCATGGCGGATGGTTGT | 60.750 | 57.895 | 0.00 | 0.00 | 43.03 | 3.32 |
1435 | 1443 | 6.120507 | AGCTTAGGATGTTGAAGAAGAAGT | 57.879 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1897 | 1911 | 7.427214 | TGTTTACACCTAGTGCCAAAATAAAC | 58.573 | 34.615 | 0.00 | 2.88 | 36.98 | 2.01 |
1921 | 1937 | 7.033185 | ACGAACATTTTTAAGGGCATTACATC | 58.967 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2032 | 2055 | 2.028876 | GTTTGTGGTGTTTAGGGCTGT | 58.971 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
2042 | 2065 | 1.358152 | TTAGGGCTGTGCTGGTAACT | 58.642 | 50.000 | 0.00 | 0.00 | 37.61 | 2.24 |
2044 | 2067 | 1.073199 | GGGCTGTGCTGGTAACTGT | 59.927 | 57.895 | 0.00 | 0.00 | 37.92 | 3.55 |
2220 | 2245 | 2.493030 | GCGCTGGTAACCGCTAGA | 59.507 | 61.111 | 0.00 | 0.00 | 46.14 | 2.43 |
2258 | 2283 | 2.983192 | TGACATGGGTAGGGAAGAAACA | 59.017 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
2270 | 2295 | 8.648693 | GGTAGGGAAGAAACATATACATAGTGT | 58.351 | 37.037 | 0.00 | 0.00 | 0.00 | 3.55 |
2271 | 2296 | 9.477484 | GTAGGGAAGAAACATATACATAGTGTG | 57.523 | 37.037 | 0.00 | 0.00 | 0.00 | 3.82 |
2272 | 2297 | 8.090788 | AGGGAAGAAACATATACATAGTGTGT | 57.909 | 34.615 | 0.00 | 0.00 | 44.95 | 3.72 |
2273 | 2298 | 8.548877 | AGGGAAGAAACATATACATAGTGTGTT | 58.451 | 33.333 | 0.00 | 0.00 | 42.29 | 3.32 |
2274 | 2299 | 8.612619 | GGGAAGAAACATATACATAGTGTGTTG | 58.387 | 37.037 | 0.00 | 0.00 | 42.29 | 3.33 |
2275 | 2300 | 8.612619 | GGAAGAAACATATACATAGTGTGTTGG | 58.387 | 37.037 | 0.00 | 0.00 | 42.29 | 3.77 |
2276 | 2301 | 9.378551 | GAAGAAACATATACATAGTGTGTTGGA | 57.621 | 33.333 | 0.00 | 0.00 | 42.29 | 3.53 |
2277 | 2302 | 9.733556 | AAGAAACATATACATAGTGTGTTGGAA | 57.266 | 29.630 | 0.00 | 0.00 | 42.29 | 3.53 |
2278 | 2303 | 9.733556 | AGAAACATATACATAGTGTGTTGGAAA | 57.266 | 29.630 | 0.00 | 0.00 | 42.29 | 3.13 |
2284 | 2309 | 5.835113 | ACATAGTGTGTTGGAAATATGCC | 57.165 | 39.130 | 0.00 | 0.00 | 38.01 | 4.40 |
2285 | 2310 | 4.644685 | ACATAGTGTGTTGGAAATATGCCC | 59.355 | 41.667 | 0.00 | 0.00 | 38.01 | 5.36 |
2286 | 2311 | 3.456380 | AGTGTGTTGGAAATATGCCCT | 57.544 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
2287 | 2312 | 4.584638 | AGTGTGTTGGAAATATGCCCTA | 57.415 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
2288 | 2313 | 4.526970 | AGTGTGTTGGAAATATGCCCTAG | 58.473 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2289 | 2314 | 4.227300 | AGTGTGTTGGAAATATGCCCTAGA | 59.773 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
2290 | 2315 | 4.576463 | GTGTGTTGGAAATATGCCCTAGAG | 59.424 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
2291 | 2316 | 4.137543 | GTGTTGGAAATATGCCCTAGAGG | 58.862 | 47.826 | 0.00 | 0.00 | 39.47 | 3.69 |
2307 | 2332 | 7.881775 | CCCTAGAGGCAATAATAAAAGTGTT | 57.118 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2308 | 2333 | 8.974060 | CCCTAGAGGCAATAATAAAAGTGTTA | 57.026 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
2309 | 2334 | 9.574516 | CCCTAGAGGCAATAATAAAAGTGTTAT | 57.425 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2369 | 2394 | 8.948631 | ATTCATGCTATAACTGTATTATCCGG | 57.051 | 34.615 | 0.00 | 0.00 | 0.00 | 5.14 |
2370 | 2395 | 7.712204 | TCATGCTATAACTGTATTATCCGGA | 57.288 | 36.000 | 6.61 | 6.61 | 0.00 | 5.14 |
2371 | 2396 | 8.129496 | TCATGCTATAACTGTATTATCCGGAA | 57.871 | 34.615 | 9.01 | 0.00 | 0.00 | 4.30 |
2372 | 2397 | 8.590204 | TCATGCTATAACTGTATTATCCGGAAA | 58.410 | 33.333 | 9.01 | 4.74 | 0.00 | 3.13 |
2373 | 2398 | 9.383519 | CATGCTATAACTGTATTATCCGGAAAT | 57.616 | 33.333 | 9.01 | 12.31 | 0.00 | 2.17 |
2374 | 2399 | 8.997621 | TGCTATAACTGTATTATCCGGAAATC | 57.002 | 34.615 | 9.01 | 5.33 | 0.00 | 2.17 |
2375 | 2400 | 7.758076 | TGCTATAACTGTATTATCCGGAAATCG | 59.242 | 37.037 | 9.01 | 5.25 | 38.88 | 3.34 |
2376 | 2401 | 7.758528 | GCTATAACTGTATTATCCGGAAATCGT | 59.241 | 37.037 | 9.01 | 5.81 | 37.11 | 3.73 |
2381 | 2406 | 8.976986 | ACTGTATTATCCGGAAATCGTAATAC | 57.023 | 34.615 | 25.06 | 25.06 | 40.20 | 1.89 |
2382 | 2407 | 8.579006 | ACTGTATTATCCGGAAATCGTAATACA | 58.421 | 33.333 | 28.89 | 28.89 | 43.27 | 2.29 |
2383 | 2408 | 8.746922 | TGTATTATCCGGAAATCGTAATACAC | 57.253 | 34.615 | 28.04 | 16.29 | 42.13 | 2.90 |
2399 | 2424 | 7.979037 | CGTAATACACGTGTGAATACATAGAC | 58.021 | 38.462 | 30.83 | 14.41 | 45.82 | 2.59 |
2400 | 2425 | 7.112565 | CGTAATACACGTGTGAATACATAGACC | 59.887 | 40.741 | 30.83 | 6.57 | 45.82 | 3.85 |
2401 | 2426 | 4.794278 | ACACGTGTGAATACATAGACCA | 57.206 | 40.909 | 22.71 | 0.00 | 39.39 | 4.02 |
2402 | 2427 | 4.491676 | ACACGTGTGAATACATAGACCAC | 58.508 | 43.478 | 22.71 | 0.00 | 39.39 | 4.16 |
2403 | 2428 | 4.021807 | ACACGTGTGAATACATAGACCACA | 60.022 | 41.667 | 22.71 | 0.00 | 39.39 | 4.17 |
2404 | 2429 | 4.926832 | CACGTGTGAATACATAGACCACAA | 59.073 | 41.667 | 7.58 | 0.00 | 39.13 | 3.33 |
2405 | 2430 | 5.580691 | CACGTGTGAATACATAGACCACAAT | 59.419 | 40.000 | 7.58 | 0.00 | 39.13 | 2.71 |
2406 | 2431 | 6.754675 | CACGTGTGAATACATAGACCACAATA | 59.245 | 38.462 | 7.58 | 0.00 | 39.13 | 1.90 |
2407 | 2432 | 7.438160 | CACGTGTGAATACATAGACCACAATAT | 59.562 | 37.037 | 7.58 | 0.00 | 39.13 | 1.28 |
2408 | 2433 | 7.438160 | ACGTGTGAATACATAGACCACAATATG | 59.562 | 37.037 | 0.00 | 0.00 | 39.13 | 1.78 |
2409 | 2434 | 7.438160 | CGTGTGAATACATAGACCACAATATGT | 59.562 | 37.037 | 0.00 | 3.60 | 43.31 | 2.29 |
2410 | 2435 | 8.765219 | GTGTGAATACATAGACCACAATATGTC | 58.235 | 37.037 | 0.00 | 0.00 | 40.78 | 3.06 |
2411 | 2436 | 7.931407 | TGTGAATACATAGACCACAATATGTCC | 59.069 | 37.037 | 1.37 | 0.00 | 40.78 | 4.02 |
2412 | 2437 | 7.387948 | GTGAATACATAGACCACAATATGTCCC | 59.612 | 40.741 | 1.37 | 0.00 | 40.78 | 4.46 |
2413 | 2438 | 7.292356 | TGAATACATAGACCACAATATGTCCCT | 59.708 | 37.037 | 1.37 | 0.00 | 40.78 | 4.20 |
2414 | 2439 | 8.736097 | AATACATAGACCACAATATGTCCCTA | 57.264 | 34.615 | 1.37 | 0.00 | 40.78 | 3.53 |
2415 | 2440 | 6.672266 | ACATAGACCACAATATGTCCCTAG | 57.328 | 41.667 | 0.00 | 0.00 | 37.98 | 3.02 |
2416 | 2441 | 6.143915 | ACATAGACCACAATATGTCCCTAGT | 58.856 | 40.000 | 0.00 | 0.00 | 37.98 | 2.57 |
2417 | 2442 | 6.042093 | ACATAGACCACAATATGTCCCTAGTG | 59.958 | 42.308 | 0.00 | 0.00 | 37.98 | 2.74 |
2418 | 2443 | 4.620723 | AGACCACAATATGTCCCTAGTGA | 58.379 | 43.478 | 0.00 | 0.00 | 31.76 | 3.41 |
2419 | 2444 | 4.651503 | AGACCACAATATGTCCCTAGTGAG | 59.348 | 45.833 | 0.00 | 0.00 | 31.76 | 3.51 |
2420 | 2445 | 3.134804 | ACCACAATATGTCCCTAGTGAGC | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
2421 | 2446 | 3.495100 | CCACAATATGTCCCTAGTGAGCC | 60.495 | 52.174 | 0.00 | 0.00 | 0.00 | 4.70 |
2422 | 2447 | 3.389329 | CACAATATGTCCCTAGTGAGCCT | 59.611 | 47.826 | 0.00 | 0.00 | 0.00 | 4.58 |
2423 | 2448 | 3.643792 | ACAATATGTCCCTAGTGAGCCTC | 59.356 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
2424 | 2449 | 3.900601 | CAATATGTCCCTAGTGAGCCTCT | 59.099 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2425 | 2450 | 5.080337 | CAATATGTCCCTAGTGAGCCTCTA | 58.920 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
2426 | 2451 | 2.738587 | TGTCCCTAGTGAGCCTCTAG | 57.261 | 55.000 | 0.00 | 0.00 | 35.86 | 2.43 |
2427 | 2452 | 1.923850 | TGTCCCTAGTGAGCCTCTAGT | 59.076 | 52.381 | 0.00 | 0.00 | 34.72 | 2.57 |
2428 | 2453 | 2.312140 | TGTCCCTAGTGAGCCTCTAGTT | 59.688 | 50.000 | 0.00 | 0.00 | 34.72 | 2.24 |
2429 | 2454 | 2.691011 | GTCCCTAGTGAGCCTCTAGTTG | 59.309 | 54.545 | 0.00 | 3.20 | 34.72 | 3.16 |
2430 | 2455 | 2.581246 | TCCCTAGTGAGCCTCTAGTTGA | 59.419 | 50.000 | 0.00 | 4.76 | 34.72 | 3.18 |
2431 | 2456 | 2.691011 | CCCTAGTGAGCCTCTAGTTGAC | 59.309 | 54.545 | 0.00 | 0.00 | 34.72 | 3.18 |
2432 | 2457 | 3.626222 | CCCTAGTGAGCCTCTAGTTGACT | 60.626 | 52.174 | 0.00 | 0.00 | 34.72 | 3.41 |
2433 | 2458 | 4.385421 | CCCTAGTGAGCCTCTAGTTGACTA | 60.385 | 50.000 | 0.00 | 0.00 | 34.72 | 2.59 |
2434 | 2459 | 4.819630 | CCTAGTGAGCCTCTAGTTGACTAG | 59.180 | 50.000 | 11.14 | 11.14 | 45.57 | 2.57 |
2435 | 2460 | 3.020984 | AGTGAGCCTCTAGTTGACTAGC | 58.979 | 50.000 | 12.30 | 3.61 | 44.24 | 3.42 |
2436 | 2461 | 3.020984 | GTGAGCCTCTAGTTGACTAGCT | 58.979 | 50.000 | 12.30 | 7.92 | 44.24 | 3.32 |
2437 | 2462 | 3.066203 | GTGAGCCTCTAGTTGACTAGCTC | 59.934 | 52.174 | 17.34 | 17.34 | 44.24 | 4.09 |
2438 | 2463 | 2.289547 | GAGCCTCTAGTTGACTAGCTCG | 59.710 | 54.545 | 12.30 | 0.00 | 44.24 | 5.03 |
2439 | 2464 | 2.018515 | GCCTCTAGTTGACTAGCTCGT | 58.981 | 52.381 | 12.30 | 0.00 | 44.24 | 4.18 |
2440 | 2465 | 2.424246 | GCCTCTAGTTGACTAGCTCGTT | 59.576 | 50.000 | 12.30 | 0.00 | 44.24 | 3.85 |
2441 | 2466 | 3.732471 | GCCTCTAGTTGACTAGCTCGTTG | 60.732 | 52.174 | 12.30 | 0.75 | 44.24 | 4.10 |
2442 | 2467 | 3.440872 | CCTCTAGTTGACTAGCTCGTTGT | 59.559 | 47.826 | 12.30 | 0.00 | 44.24 | 3.32 |
2443 | 2468 | 4.407818 | CTCTAGTTGACTAGCTCGTTGTG | 58.592 | 47.826 | 12.30 | 0.00 | 44.24 | 3.33 |
2444 | 2469 | 4.070009 | TCTAGTTGACTAGCTCGTTGTGA | 58.930 | 43.478 | 12.30 | 0.00 | 44.24 | 3.58 |
2445 | 2470 | 3.944055 | AGTTGACTAGCTCGTTGTGAT | 57.056 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
2446 | 2471 | 3.839293 | AGTTGACTAGCTCGTTGTGATC | 58.161 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
2447 | 2472 | 3.255888 | AGTTGACTAGCTCGTTGTGATCA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2448 | 2473 | 3.934457 | TGACTAGCTCGTTGTGATCAA | 57.066 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2449 | 2474 | 8.771523 | CTAGTTGACTAGCTCGTTGTGATCAAC | 61.772 | 44.444 | 0.00 | 9.17 | 42.66 | 3.18 |
2462 | 2487 | 5.682234 | TGTGATCAACAGATAGTCATGGT | 57.318 | 39.130 | 0.00 | 0.00 | 33.78 | 3.55 |
2463 | 2488 | 6.053632 | TGTGATCAACAGATAGTCATGGTT | 57.946 | 37.500 | 0.00 | 0.00 | 33.78 | 3.67 |
2464 | 2489 | 6.475504 | TGTGATCAACAGATAGTCATGGTTT | 58.524 | 36.000 | 0.00 | 0.00 | 33.78 | 3.27 |
2465 | 2490 | 6.595326 | TGTGATCAACAGATAGTCATGGTTTC | 59.405 | 38.462 | 0.00 | 0.00 | 33.78 | 2.78 |
2466 | 2491 | 6.037610 | GTGATCAACAGATAGTCATGGTTTCC | 59.962 | 42.308 | 0.00 | 0.00 | 0.00 | 3.13 |
2467 | 2492 | 5.762179 | TCAACAGATAGTCATGGTTTCCT | 57.238 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2468 | 2493 | 5.491070 | TCAACAGATAGTCATGGTTTCCTG | 58.509 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2469 | 2494 | 4.494091 | ACAGATAGTCATGGTTTCCTGG | 57.506 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
2470 | 2495 | 3.209410 | CAGATAGTCATGGTTTCCTGGC | 58.791 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2471 | 2496 | 3.118112 | CAGATAGTCATGGTTTCCTGGCT | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 4.75 |
2472 | 2497 | 4.101585 | CAGATAGTCATGGTTTCCTGGCTA | 59.898 | 45.833 | 0.00 | 0.00 | 34.35 | 3.93 |
2473 | 2498 | 4.910304 | AGATAGTCATGGTTTCCTGGCTAT | 59.090 | 41.667 | 10.00 | 10.00 | 41.67 | 2.97 |
2474 | 2499 | 3.287867 | AGTCATGGTTTCCTGGCTATG | 57.712 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
2475 | 2500 | 2.092212 | AGTCATGGTTTCCTGGCTATGG | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2476 | 2501 | 2.092429 | GTCATGGTTTCCTGGCTATGGA | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2477 | 2502 | 2.092429 | TCATGGTTTCCTGGCTATGGAC | 60.092 | 50.000 | 0.00 | 0.00 | 32.65 | 4.02 |
2478 | 2503 | 1.367346 | TGGTTTCCTGGCTATGGACA | 58.633 | 50.000 | 0.00 | 0.00 | 32.65 | 4.02 |
2479 | 2504 | 1.922447 | TGGTTTCCTGGCTATGGACAT | 59.078 | 47.619 | 0.00 | 0.00 | 32.65 | 3.06 |
2480 | 2505 | 2.311542 | TGGTTTCCTGGCTATGGACATT | 59.688 | 45.455 | 0.00 | 0.00 | 32.65 | 2.71 |
2481 | 2506 | 2.689983 | GGTTTCCTGGCTATGGACATTG | 59.310 | 50.000 | 0.00 | 0.00 | 32.65 | 2.82 |
2482 | 2507 | 2.689983 | GTTTCCTGGCTATGGACATTGG | 59.310 | 50.000 | 0.00 | 0.00 | 32.65 | 3.16 |
2483 | 2508 | 1.891933 | TCCTGGCTATGGACATTGGA | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2484 | 2509 | 2.421725 | TCCTGGCTATGGACATTGGAT | 58.578 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2485 | 2510 | 2.107031 | TCCTGGCTATGGACATTGGATG | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2498 | 2523 | 5.756195 | ACATTGGATGTCGTTGATAATGG | 57.244 | 39.130 | 0.00 | 0.00 | 39.92 | 3.16 |
2499 | 2524 | 4.580167 | ACATTGGATGTCGTTGATAATGGG | 59.420 | 41.667 | 0.00 | 0.00 | 39.92 | 4.00 |
2500 | 2525 | 4.495690 | TTGGATGTCGTTGATAATGGGA | 57.504 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
2501 | 2526 | 4.705110 | TGGATGTCGTTGATAATGGGAT | 57.295 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
2502 | 2527 | 4.641396 | TGGATGTCGTTGATAATGGGATC | 58.359 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2503 | 2528 | 4.102367 | TGGATGTCGTTGATAATGGGATCA | 59.898 | 41.667 | 0.00 | 0.00 | 33.96 | 2.92 |
2504 | 2529 | 4.452455 | GGATGTCGTTGATAATGGGATCAC | 59.548 | 45.833 | 0.00 | 0.00 | 35.56 | 3.06 |
2505 | 2530 | 4.479786 | TGTCGTTGATAATGGGATCACA | 57.520 | 40.909 | 0.00 | 0.00 | 35.56 | 3.58 |
2506 | 2531 | 5.034852 | TGTCGTTGATAATGGGATCACAT | 57.965 | 39.130 | 4.06 | 4.06 | 35.56 | 3.21 |
2507 | 2532 | 5.056480 | TGTCGTTGATAATGGGATCACATC | 58.944 | 41.667 | 11.76 | 0.00 | 35.56 | 3.06 |
2508 | 2533 | 5.056480 | GTCGTTGATAATGGGATCACATCA | 58.944 | 41.667 | 11.76 | 2.91 | 35.56 | 3.07 |
2509 | 2534 | 5.702670 | GTCGTTGATAATGGGATCACATCAT | 59.297 | 40.000 | 11.76 | 0.88 | 35.56 | 2.45 |
2510 | 2535 | 6.205464 | GTCGTTGATAATGGGATCACATCATT | 59.795 | 38.462 | 11.76 | 9.08 | 35.56 | 2.57 |
2511 | 2536 | 7.387673 | GTCGTTGATAATGGGATCACATCATTA | 59.612 | 37.037 | 11.76 | 10.83 | 35.56 | 1.90 |
2512 | 2537 | 7.603784 | TCGTTGATAATGGGATCACATCATTAG | 59.396 | 37.037 | 11.76 | 1.42 | 36.97 | 1.73 |
2513 | 2538 | 7.148356 | CGTTGATAATGGGATCACATCATTAGG | 60.148 | 40.741 | 11.76 | 0.00 | 36.97 | 2.69 |
2514 | 2539 | 7.572546 | TGATAATGGGATCACATCATTAGGA | 57.427 | 36.000 | 11.76 | 0.55 | 36.97 | 2.94 |
2515 | 2540 | 7.627311 | TGATAATGGGATCACATCATTAGGAG | 58.373 | 38.462 | 11.76 | 0.00 | 36.97 | 3.69 |
2516 | 2541 | 7.458806 | TGATAATGGGATCACATCATTAGGAGA | 59.541 | 37.037 | 11.76 | 0.00 | 36.97 | 3.71 |
2517 | 2542 | 6.520021 | AATGGGATCACATCATTAGGAGAA | 57.480 | 37.500 | 11.76 | 0.00 | 30.35 | 2.87 |
2518 | 2543 | 6.715350 | ATGGGATCACATCATTAGGAGAAT | 57.285 | 37.500 | 4.06 | 0.00 | 0.00 | 2.40 |
2519 | 2544 | 5.872963 | TGGGATCACATCATTAGGAGAATG | 58.127 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
2520 | 2545 | 5.608015 | TGGGATCACATCATTAGGAGAATGA | 59.392 | 40.000 | 0.00 | 2.66 | 40.50 | 2.57 |
2521 | 2546 | 6.273965 | TGGGATCACATCATTAGGAGAATGAT | 59.726 | 38.462 | 0.00 | 6.90 | 45.40 | 2.45 |
2529 | 2554 | 6.752285 | TCATTAGGAGAATGATGTGATGGA | 57.248 | 37.500 | 0.00 | 0.00 | 32.21 | 3.41 |
2530 | 2555 | 6.528321 | TCATTAGGAGAATGATGTGATGGAC | 58.472 | 40.000 | 0.00 | 0.00 | 32.21 | 4.02 |
2531 | 2556 | 5.955961 | TTAGGAGAATGATGTGATGGACA | 57.044 | 39.130 | 0.00 | 0.00 | 39.53 | 4.02 |
2532 | 2557 | 4.849813 | AGGAGAATGATGTGATGGACAA | 57.150 | 40.909 | 0.00 | 0.00 | 38.36 | 3.18 |
2533 | 2558 | 4.778579 | AGGAGAATGATGTGATGGACAAG | 58.221 | 43.478 | 0.00 | 0.00 | 38.36 | 3.16 |
2534 | 2559 | 4.472470 | AGGAGAATGATGTGATGGACAAGA | 59.528 | 41.667 | 0.00 | 0.00 | 38.36 | 3.02 |
2535 | 2560 | 4.574013 | GGAGAATGATGTGATGGACAAGAC | 59.426 | 45.833 | 0.00 | 0.00 | 38.36 | 3.01 |
2536 | 2561 | 4.521146 | AGAATGATGTGATGGACAAGACC | 58.479 | 43.478 | 0.00 | 0.00 | 38.36 | 3.85 |
2537 | 2562 | 2.787473 | TGATGTGATGGACAAGACCC | 57.213 | 50.000 | 0.00 | 0.00 | 38.36 | 4.46 |
2538 | 2563 | 1.984424 | TGATGTGATGGACAAGACCCA | 59.016 | 47.619 | 0.00 | 0.00 | 38.36 | 4.51 |
2539 | 2564 | 2.374839 | TGATGTGATGGACAAGACCCAA | 59.625 | 45.455 | 0.00 | 0.00 | 38.36 | 4.12 |
2540 | 2565 | 3.010472 | TGATGTGATGGACAAGACCCAAT | 59.990 | 43.478 | 0.00 | 0.00 | 38.36 | 3.16 |
2541 | 2566 | 3.071874 | TGTGATGGACAAGACCCAATC | 57.928 | 47.619 | 0.00 | 0.00 | 37.22 | 2.67 |
2542 | 2567 | 2.290896 | TGTGATGGACAAGACCCAATCC | 60.291 | 50.000 | 0.00 | 0.00 | 37.22 | 3.01 |
2543 | 2568 | 2.025887 | GTGATGGACAAGACCCAATCCT | 60.026 | 50.000 | 0.00 | 0.00 | 37.22 | 3.24 |
2544 | 2569 | 3.199946 | GTGATGGACAAGACCCAATCCTA | 59.800 | 47.826 | 0.00 | 0.00 | 37.22 | 2.94 |
2545 | 2570 | 3.849574 | TGATGGACAAGACCCAATCCTAA | 59.150 | 43.478 | 0.00 | 0.00 | 37.22 | 2.69 |
2546 | 2571 | 4.080356 | TGATGGACAAGACCCAATCCTAAG | 60.080 | 45.833 | 0.00 | 0.00 | 37.22 | 2.18 |
2547 | 2572 | 2.026262 | TGGACAAGACCCAATCCTAAGC | 60.026 | 50.000 | 0.00 | 0.00 | 32.06 | 3.09 |
2548 | 2573 | 2.644676 | GACAAGACCCAATCCTAAGCC | 58.355 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 3.484649 | GCTTTACATGATGCAAAGCGATG | 59.515 | 43.478 | 22.83 | 0.00 | 43.97 | 3.84 |
15 | 16 | 7.754069 | TCTCTTTTTGTTGTTGCTTTACATG | 57.246 | 32.000 | 0.00 | 0.00 | 0.00 | 3.21 |
16 | 17 | 8.770438 | TTTCTCTTTTTGTTGTTGCTTTACAT | 57.230 | 26.923 | 0.00 | 0.00 | 0.00 | 2.29 |
48 | 51 | 4.261825 | CGAAATGCCCTCAAGGTTTGTAAA | 60.262 | 41.667 | 0.00 | 0.00 | 38.26 | 2.01 |
71 | 74 | 2.098934 | TGACTCACACAATGTGTTTGGC | 59.901 | 45.455 | 17.31 | 14.49 | 45.08 | 4.52 |
72 | 75 | 4.292599 | CATGACTCACACAATGTGTTTGG | 58.707 | 43.478 | 17.31 | 11.69 | 45.08 | 3.28 |
88 | 91 | 2.224079 | GTCAACGTCAACATGCATGACT | 59.776 | 45.455 | 32.75 | 16.19 | 43.93 | 3.41 |
112 | 115 | 2.732001 | TGACTATGACATCGACGTCG | 57.268 | 50.000 | 31.30 | 31.30 | 38.84 | 5.12 |
113 | 116 | 5.621634 | CACTATTGACTATGACATCGACGTC | 59.378 | 44.000 | 4.33 | 4.33 | 36.40 | 4.34 |
115 | 118 | 4.912187 | CCACTATTGACTATGACATCGACG | 59.088 | 45.833 | 0.00 | 0.00 | 0.00 | 5.12 |
116 | 119 | 5.833082 | ACCACTATTGACTATGACATCGAC | 58.167 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
117 | 120 | 6.273071 | CAACCACTATTGACTATGACATCGA | 58.727 | 40.000 | 0.00 | 0.00 | 0.00 | 3.59 |
118 | 121 | 5.050769 | GCAACCACTATTGACTATGACATCG | 60.051 | 44.000 | 0.00 | 0.00 | 0.00 | 3.84 |
119 | 122 | 5.237344 | GGCAACCACTATTGACTATGACATC | 59.763 | 44.000 | 0.00 | 0.00 | 34.49 | 3.06 |
126 | 129 | 3.244284 | ACAACGGCAACCACTATTGACTA | 60.244 | 43.478 | 0.00 | 0.00 | 35.24 | 2.59 |
136 | 139 | 2.266816 | TACCACCACAACGGCAACCA | 62.267 | 55.000 | 0.00 | 0.00 | 39.03 | 3.67 |
140 | 143 | 0.891449 | CCATTACCACCACAACGGCA | 60.891 | 55.000 | 0.00 | 0.00 | 39.03 | 5.69 |
141 | 144 | 1.591504 | CCCATTACCACCACAACGGC | 61.592 | 60.000 | 0.00 | 0.00 | 39.03 | 5.68 |
152 | 155 | 0.466555 | TTATGCCACGGCCCATTACC | 60.467 | 55.000 | 5.42 | 0.00 | 41.09 | 2.85 |
154 | 157 | 3.009584 | TCATATTATGCCACGGCCCATTA | 59.990 | 43.478 | 5.42 | 0.00 | 41.09 | 1.90 |
161 | 164 | 8.267620 | TCATAAAGATTCATATTATGCCACGG | 57.732 | 34.615 | 0.00 | 0.00 | 37.09 | 4.94 |
223 | 226 | 7.502561 | GCCCTTGTAATTATGAGGTCATACTTT | 59.497 | 37.037 | 13.15 | 4.53 | 38.44 | 2.66 |
227 | 230 | 5.371176 | TGGCCCTTGTAATTATGAGGTCATA | 59.629 | 40.000 | 0.00 | 0.00 | 37.76 | 2.15 |
237 | 243 | 2.042433 | AGCACCTTGGCCCTTGTAATTA | 59.958 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
239 | 245 | 0.409484 | AGCACCTTGGCCCTTGTAAT | 59.591 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
284 | 290 | 9.342308 | CTATATAAATGTGCTTCCAGGAGAAAA | 57.658 | 33.333 | 0.00 | 0.00 | 32.88 | 2.29 |
292 | 298 | 9.679661 | TTTGTTCTCTATATAAATGTGCTTCCA | 57.320 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
370 | 376 | 4.202243 | ACACCATTTGATTTGTTGGAGGTG | 60.202 | 41.667 | 0.00 | 0.00 | 46.95 | 4.00 |
371 | 377 | 3.966665 | ACACCATTTGATTTGTTGGAGGT | 59.033 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
376 | 382 | 4.309099 | CCTCCACACCATTTGATTTGTTG | 58.691 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
377 | 383 | 3.244181 | GCCTCCACACCATTTGATTTGTT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
401 | 407 | 4.951094 | AGCTATATCTCTTAGGGCCTAACG | 59.049 | 45.833 | 22.01 | 16.94 | 0.00 | 3.18 |
447 | 453 | 8.592105 | AGTACTCGCTAGTAATAGTTACTCTG | 57.408 | 38.462 | 5.70 | 3.03 | 44.90 | 3.35 |
455 | 461 | 9.828852 | CCATTTAAGAGTACTCGCTAGTAATAG | 57.171 | 37.037 | 17.07 | 0.00 | 39.90 | 1.73 |
456 | 462 | 9.347240 | ACCATTTAAGAGTACTCGCTAGTAATA | 57.653 | 33.333 | 17.07 | 0.15 | 39.90 | 0.98 |
460 | 466 | 5.163540 | CCACCATTTAAGAGTACTCGCTAGT | 60.164 | 44.000 | 17.07 | 7.08 | 39.91 | 2.57 |
464 | 470 | 2.608090 | GCCACCATTTAAGAGTACTCGC | 59.392 | 50.000 | 17.07 | 6.76 | 34.09 | 5.03 |
466 | 472 | 5.675538 | AGATGCCACCATTTAAGAGTACTC | 58.324 | 41.667 | 15.41 | 15.41 | 0.00 | 2.59 |
468 | 474 | 5.675538 | AGAGATGCCACCATTTAAGAGTAC | 58.324 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
472 | 478 | 7.071698 | AGAGAATAGAGATGCCACCATTTAAGA | 59.928 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
473 | 479 | 7.222872 | AGAGAATAGAGATGCCACCATTTAAG | 58.777 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
481 | 487 | 8.900983 | AAAGATAAAGAGAATAGAGATGCCAC | 57.099 | 34.615 | 0.00 | 0.00 | 0.00 | 5.01 |
493 | 499 | 9.429359 | GACACATCTGAGAAAAGATAAAGAGAA | 57.571 | 33.333 | 0.00 | 0.00 | 35.09 | 2.87 |
503 | 509 | 4.454847 | AGCATGTGACACATCTGAGAAAAG | 59.545 | 41.667 | 18.27 | 5.37 | 36.53 | 2.27 |
518 | 524 | 2.435410 | CAGCCAGCGAGCATGTGA | 60.435 | 61.111 | 3.80 | 0.00 | 34.23 | 3.58 |
528 | 534 | 1.602888 | CATAGATGGGGCAGCCAGC | 60.603 | 63.158 | 15.19 | 0.00 | 44.65 | 4.85 |
533 | 539 | 0.250038 | CGTGGTCATAGATGGGGCAG | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
539 | 545 | 5.515797 | TTTCTCTACCGTGGTCATAGATG | 57.484 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
543 | 549 | 8.582437 | CCTTATTATTTCTCTACCGTGGTCATA | 58.418 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
547 | 553 | 5.664457 | ACCCTTATTATTTCTCTACCGTGGT | 59.336 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
562 | 568 | 9.150028 | GGGCAAAAGGATAATTAACCCTTATTA | 57.850 | 33.333 | 17.67 | 0.00 | 39.21 | 0.98 |
590 | 596 | 0.610174 | TGAGCAGATGGACACCACTC | 59.390 | 55.000 | 0.00 | 0.00 | 35.80 | 3.51 |
1267 | 1275 | 1.949799 | ATCAGAGTCTTGGCCAGAGT | 58.050 | 50.000 | 5.11 | 8.92 | 37.96 | 3.24 |
1363 | 1371 | 1.573108 | TCGCCCTCCATCTCTTCTTT | 58.427 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1897 | 1911 | 6.196353 | CGATGTAATGCCCTTAAAAATGTTCG | 59.804 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
1972 | 1989 | 2.195683 | CCCCAGCCGCACCAATAT | 59.804 | 61.111 | 0.00 | 0.00 | 0.00 | 1.28 |
1973 | 1990 | 3.012119 | TCCCCAGCCGCACCAATA | 61.012 | 61.111 | 0.00 | 0.00 | 0.00 | 1.90 |
2032 | 2055 | 3.678056 | CTGTCCTAACAGTTACCAGCA | 57.322 | 47.619 | 0.00 | 0.00 | 46.52 | 4.41 |
2042 | 2065 | 2.906389 | ACTCTTGCCATCTGTCCTAACA | 59.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
2044 | 2067 | 4.041567 | TCAAACTCTTGCCATCTGTCCTAA | 59.958 | 41.667 | 0.00 | 0.00 | 32.14 | 2.69 |
2154 | 2179 | 3.319198 | GGGTTCGAGTCCCCAGCA | 61.319 | 66.667 | 14.49 | 0.00 | 40.88 | 4.41 |
2220 | 2245 | 3.554934 | TGTCAAACTCTTGCCATCTGTT | 58.445 | 40.909 | 0.00 | 0.00 | 32.14 | 3.16 |
2258 | 2283 | 9.231297 | GGCATATTTCCAACACACTATGTATAT | 57.769 | 33.333 | 0.00 | 0.00 | 42.31 | 0.86 |
2270 | 2295 | 4.437682 | CCTCTAGGGCATATTTCCAACA | 57.562 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
2283 | 2308 | 7.881775 | AACACTTTTATTATTGCCTCTAGGG | 57.118 | 36.000 | 0.00 | 0.00 | 35.18 | 3.53 |
2344 | 2369 | 8.758829 | TCCGGATAATACAGTTATAGCATGAAT | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2345 | 2370 | 8.129496 | TCCGGATAATACAGTTATAGCATGAA | 57.871 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2346 | 2371 | 7.712204 | TCCGGATAATACAGTTATAGCATGA | 57.288 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2347 | 2372 | 8.771920 | TTTCCGGATAATACAGTTATAGCATG | 57.228 | 34.615 | 4.15 | 0.00 | 0.00 | 4.06 |
2348 | 2373 | 9.601217 | GATTTCCGGATAATACAGTTATAGCAT | 57.399 | 33.333 | 4.15 | 0.00 | 0.00 | 3.79 |
2349 | 2374 | 7.758076 | CGATTTCCGGATAATACAGTTATAGCA | 59.242 | 37.037 | 4.15 | 0.00 | 33.91 | 3.49 |
2350 | 2375 | 7.758528 | ACGATTTCCGGATAATACAGTTATAGC | 59.241 | 37.037 | 4.15 | 0.00 | 43.93 | 2.97 |
2355 | 2380 | 9.415544 | GTATTACGATTTCCGGATAATACAGTT | 57.584 | 33.333 | 26.02 | 11.20 | 39.68 | 3.16 |
2356 | 2381 | 8.579006 | TGTATTACGATTTCCGGATAATACAGT | 58.421 | 33.333 | 28.04 | 20.31 | 41.92 | 3.55 |
2357 | 2382 | 8.857216 | GTGTATTACGATTTCCGGATAATACAG | 58.143 | 37.037 | 30.32 | 18.57 | 44.29 | 2.74 |
2358 | 2383 | 8.746922 | GTGTATTACGATTTCCGGATAATACA | 57.253 | 34.615 | 28.04 | 28.04 | 43.07 | 2.29 |
2375 | 2400 | 7.916977 | TGGTCTATGTATTCACACGTGTATTAC | 59.083 | 37.037 | 22.90 | 20.91 | 37.54 | 1.89 |
2376 | 2401 | 7.916977 | GTGGTCTATGTATTCACACGTGTATTA | 59.083 | 37.037 | 22.90 | 9.93 | 37.54 | 0.98 |
2377 | 2402 | 6.755141 | GTGGTCTATGTATTCACACGTGTATT | 59.245 | 38.462 | 22.90 | 11.42 | 37.54 | 1.89 |
2378 | 2403 | 6.127563 | TGTGGTCTATGTATTCACACGTGTAT | 60.128 | 38.462 | 22.90 | 14.96 | 37.54 | 2.29 |
2379 | 2404 | 5.183522 | TGTGGTCTATGTATTCACACGTGTA | 59.816 | 40.000 | 22.90 | 7.35 | 37.54 | 2.90 |
2380 | 2405 | 4.021807 | TGTGGTCTATGTATTCACACGTGT | 60.022 | 41.667 | 17.22 | 17.22 | 37.54 | 4.49 |
2381 | 2406 | 4.490743 | TGTGGTCTATGTATTCACACGTG | 58.509 | 43.478 | 15.48 | 15.48 | 37.54 | 4.49 |
2382 | 2407 | 4.794278 | TGTGGTCTATGTATTCACACGT | 57.206 | 40.909 | 0.00 | 0.00 | 37.54 | 4.49 |
2383 | 2408 | 7.438160 | ACATATTGTGGTCTATGTATTCACACG | 59.562 | 37.037 | 0.00 | 0.00 | 36.93 | 4.49 |
2384 | 2409 | 8.662781 | ACATATTGTGGTCTATGTATTCACAC | 57.337 | 34.615 | 0.00 | 0.00 | 36.93 | 3.82 |
2385 | 2410 | 7.931407 | GGACATATTGTGGTCTATGTATTCACA | 59.069 | 37.037 | 0.00 | 0.00 | 38.38 | 3.58 |
2386 | 2411 | 7.387948 | GGGACATATTGTGGTCTATGTATTCAC | 59.612 | 40.741 | 0.00 | 0.00 | 38.38 | 3.18 |
2387 | 2412 | 7.292356 | AGGGACATATTGTGGTCTATGTATTCA | 59.708 | 37.037 | 0.00 | 0.00 | 38.38 | 2.57 |
2388 | 2413 | 7.680730 | AGGGACATATTGTGGTCTATGTATTC | 58.319 | 38.462 | 0.00 | 0.00 | 38.38 | 1.75 |
2389 | 2414 | 7.633018 | AGGGACATATTGTGGTCTATGTATT | 57.367 | 36.000 | 0.00 | 0.00 | 38.38 | 1.89 |
2390 | 2415 | 7.956315 | ACTAGGGACATATTGTGGTCTATGTAT | 59.044 | 37.037 | 0.00 | 0.00 | 38.38 | 2.29 |
2391 | 2416 | 7.232737 | CACTAGGGACATATTGTGGTCTATGTA | 59.767 | 40.741 | 0.00 | 0.00 | 38.38 | 2.29 |
2392 | 2417 | 6.042093 | CACTAGGGACATATTGTGGTCTATGT | 59.958 | 42.308 | 0.00 | 0.00 | 40.38 | 2.29 |
2393 | 2418 | 6.267699 | TCACTAGGGACATATTGTGGTCTATG | 59.732 | 42.308 | 0.00 | 0.00 | 34.49 | 2.23 |
2394 | 2419 | 6.382087 | TCACTAGGGACATATTGTGGTCTAT | 58.618 | 40.000 | 0.00 | 0.00 | 34.49 | 1.98 |
2395 | 2420 | 5.773091 | TCACTAGGGACATATTGTGGTCTA | 58.227 | 41.667 | 0.00 | 0.00 | 34.49 | 2.59 |
2396 | 2421 | 4.620723 | TCACTAGGGACATATTGTGGTCT | 58.379 | 43.478 | 0.00 | 0.00 | 34.49 | 3.85 |
2397 | 2422 | 4.740934 | GCTCACTAGGGACATATTGTGGTC | 60.741 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2398 | 2423 | 3.134804 | GCTCACTAGGGACATATTGTGGT | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
2399 | 2424 | 3.495100 | GGCTCACTAGGGACATATTGTGG | 60.495 | 52.174 | 0.00 | 0.00 | 0.00 | 4.17 |
2400 | 2425 | 3.389329 | AGGCTCACTAGGGACATATTGTG | 59.611 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
2401 | 2426 | 3.643792 | GAGGCTCACTAGGGACATATTGT | 59.356 | 47.826 | 10.25 | 0.00 | 0.00 | 2.71 |
2402 | 2427 | 3.900601 | AGAGGCTCACTAGGGACATATTG | 59.099 | 47.826 | 18.26 | 0.00 | 0.00 | 1.90 |
2403 | 2428 | 4.206244 | AGAGGCTCACTAGGGACATATT | 57.794 | 45.455 | 18.26 | 0.00 | 0.00 | 1.28 |
2404 | 2429 | 3.913370 | AGAGGCTCACTAGGGACATAT | 57.087 | 47.619 | 18.26 | 0.00 | 0.00 | 1.78 |
2405 | 2430 | 3.722627 | ACTAGAGGCTCACTAGGGACATA | 59.277 | 47.826 | 18.26 | 0.00 | 40.86 | 2.29 |
2406 | 2431 | 2.516277 | ACTAGAGGCTCACTAGGGACAT | 59.484 | 50.000 | 18.26 | 0.00 | 40.86 | 3.06 |
2407 | 2432 | 1.923850 | ACTAGAGGCTCACTAGGGACA | 59.076 | 52.381 | 18.26 | 0.00 | 40.86 | 4.02 |
2408 | 2433 | 2.691011 | CAACTAGAGGCTCACTAGGGAC | 59.309 | 54.545 | 18.26 | 0.00 | 40.86 | 4.46 |
2409 | 2434 | 2.581246 | TCAACTAGAGGCTCACTAGGGA | 59.419 | 50.000 | 18.26 | 9.66 | 40.86 | 4.20 |
2410 | 2435 | 2.691011 | GTCAACTAGAGGCTCACTAGGG | 59.309 | 54.545 | 18.26 | 7.64 | 40.86 | 3.53 |
2411 | 2436 | 3.626930 | AGTCAACTAGAGGCTCACTAGG | 58.373 | 50.000 | 18.26 | 3.24 | 40.86 | 3.02 |
2412 | 2437 | 4.274950 | GCTAGTCAACTAGAGGCTCACTAG | 59.725 | 50.000 | 23.14 | 23.14 | 46.80 | 2.57 |
2413 | 2438 | 4.080243 | AGCTAGTCAACTAGAGGCTCACTA | 60.080 | 45.833 | 18.26 | 12.80 | 46.80 | 2.74 |
2414 | 2439 | 3.020984 | GCTAGTCAACTAGAGGCTCACT | 58.979 | 50.000 | 18.26 | 12.32 | 46.80 | 3.41 |
2415 | 2440 | 3.020984 | AGCTAGTCAACTAGAGGCTCAC | 58.979 | 50.000 | 18.26 | 4.72 | 46.80 | 3.51 |
2416 | 2441 | 3.283751 | GAGCTAGTCAACTAGAGGCTCA | 58.716 | 50.000 | 18.26 | 1.80 | 46.80 | 4.26 |
2417 | 2442 | 2.289547 | CGAGCTAGTCAACTAGAGGCTC | 59.710 | 54.545 | 19.03 | 16.73 | 46.80 | 4.70 |
2418 | 2443 | 2.294074 | CGAGCTAGTCAACTAGAGGCT | 58.706 | 52.381 | 19.03 | 10.84 | 46.80 | 4.58 |
2419 | 2444 | 2.018515 | ACGAGCTAGTCAACTAGAGGC | 58.981 | 52.381 | 19.03 | 6.58 | 46.80 | 4.70 |
2420 | 2445 | 3.440872 | ACAACGAGCTAGTCAACTAGAGG | 59.559 | 47.826 | 19.03 | 10.05 | 46.80 | 3.69 |
2421 | 2446 | 4.154375 | TCACAACGAGCTAGTCAACTAGAG | 59.846 | 45.833 | 19.03 | 11.89 | 46.80 | 2.43 |
2422 | 2447 | 4.070009 | TCACAACGAGCTAGTCAACTAGA | 58.930 | 43.478 | 19.03 | 0.00 | 46.80 | 2.43 |
2423 | 2448 | 4.421033 | TCACAACGAGCTAGTCAACTAG | 57.579 | 45.455 | 11.99 | 11.99 | 46.63 | 2.57 |
2424 | 2449 | 4.457949 | TGATCACAACGAGCTAGTCAACTA | 59.542 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2425 | 2450 | 3.255888 | TGATCACAACGAGCTAGTCAACT | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2426 | 2451 | 3.575630 | TGATCACAACGAGCTAGTCAAC | 58.424 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2427 | 2452 | 3.934457 | TGATCACAACGAGCTAGTCAA | 57.066 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2428 | 2453 | 3.575630 | GTTGATCACAACGAGCTAGTCA | 58.424 | 45.455 | 0.00 | 0.00 | 45.06 | 3.41 |
2439 | 2464 | 6.053632 | ACCATGACTATCTGTTGATCACAA | 57.946 | 37.500 | 0.00 | 0.00 | 33.87 | 3.33 |
2440 | 2465 | 5.682234 | ACCATGACTATCTGTTGATCACA | 57.318 | 39.130 | 0.00 | 0.00 | 34.32 | 3.58 |
2441 | 2466 | 6.037610 | GGAAACCATGACTATCTGTTGATCAC | 59.962 | 42.308 | 0.00 | 0.00 | 34.32 | 3.06 |
2442 | 2467 | 6.070021 | AGGAAACCATGACTATCTGTTGATCA | 60.070 | 38.462 | 0.00 | 0.00 | 34.32 | 2.92 |
2443 | 2468 | 6.259608 | CAGGAAACCATGACTATCTGTTGATC | 59.740 | 42.308 | 0.00 | 0.00 | 34.32 | 2.92 |
2444 | 2469 | 6.118170 | CAGGAAACCATGACTATCTGTTGAT | 58.882 | 40.000 | 0.00 | 0.00 | 36.74 | 2.57 |
2445 | 2470 | 5.491070 | CAGGAAACCATGACTATCTGTTGA | 58.509 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2446 | 2471 | 4.637534 | CCAGGAAACCATGACTATCTGTTG | 59.362 | 45.833 | 0.00 | 0.00 | 0.00 | 3.33 |
2447 | 2472 | 4.848357 | CCAGGAAACCATGACTATCTGTT | 58.152 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2448 | 2473 | 3.370953 | GCCAGGAAACCATGACTATCTGT | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2449 | 2474 | 3.118112 | AGCCAGGAAACCATGACTATCTG | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2450 | 2475 | 3.118531 | AGCCAGGAAACCATGACTATCT | 58.881 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
2451 | 2476 | 3.567478 | AGCCAGGAAACCATGACTATC | 57.433 | 47.619 | 0.00 | 0.00 | 0.00 | 2.08 |
2452 | 2477 | 4.202503 | CCATAGCCAGGAAACCATGACTAT | 60.203 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
2453 | 2478 | 3.136443 | CCATAGCCAGGAAACCATGACTA | 59.864 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2454 | 2479 | 2.092212 | CCATAGCCAGGAAACCATGACT | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2455 | 2480 | 2.092429 | TCCATAGCCAGGAAACCATGAC | 60.092 | 50.000 | 0.00 | 0.00 | 30.71 | 3.06 |
2456 | 2481 | 2.092429 | GTCCATAGCCAGGAAACCATGA | 60.092 | 50.000 | 0.00 | 0.00 | 36.80 | 3.07 |
2457 | 2482 | 2.301346 | GTCCATAGCCAGGAAACCATG | 58.699 | 52.381 | 0.00 | 0.00 | 36.80 | 3.66 |
2458 | 2483 | 1.922447 | TGTCCATAGCCAGGAAACCAT | 59.078 | 47.619 | 0.00 | 0.00 | 36.80 | 3.55 |
2459 | 2484 | 1.367346 | TGTCCATAGCCAGGAAACCA | 58.633 | 50.000 | 0.00 | 0.00 | 36.80 | 3.67 |
2460 | 2485 | 2.689983 | CAATGTCCATAGCCAGGAAACC | 59.310 | 50.000 | 0.00 | 0.00 | 36.80 | 3.27 |
2461 | 2486 | 2.689983 | CCAATGTCCATAGCCAGGAAAC | 59.310 | 50.000 | 0.00 | 0.00 | 36.80 | 2.78 |
2462 | 2487 | 2.580322 | TCCAATGTCCATAGCCAGGAAA | 59.420 | 45.455 | 0.00 | 0.00 | 36.80 | 3.13 |
2463 | 2488 | 2.204463 | TCCAATGTCCATAGCCAGGAA | 58.796 | 47.619 | 0.00 | 0.00 | 36.80 | 3.36 |
2464 | 2489 | 1.891933 | TCCAATGTCCATAGCCAGGA | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2465 | 2490 | 2.158564 | ACATCCAATGTCCATAGCCAGG | 60.159 | 50.000 | 0.00 | 0.00 | 39.92 | 4.45 |
2466 | 2491 | 3.219176 | ACATCCAATGTCCATAGCCAG | 57.781 | 47.619 | 0.00 | 0.00 | 39.92 | 4.85 |
2477 | 2502 | 4.821260 | TCCCATTATCAACGACATCCAATG | 59.179 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
2478 | 2503 | 5.047566 | TCCCATTATCAACGACATCCAAT | 57.952 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2479 | 2504 | 4.495690 | TCCCATTATCAACGACATCCAA | 57.504 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
2480 | 2505 | 4.102367 | TGATCCCATTATCAACGACATCCA | 59.898 | 41.667 | 0.00 | 0.00 | 32.97 | 3.41 |
2481 | 2506 | 4.452455 | GTGATCCCATTATCAACGACATCC | 59.548 | 45.833 | 0.00 | 0.00 | 37.61 | 3.51 |
2482 | 2507 | 5.056480 | TGTGATCCCATTATCAACGACATC | 58.944 | 41.667 | 0.00 | 0.00 | 37.61 | 3.06 |
2483 | 2508 | 5.034852 | TGTGATCCCATTATCAACGACAT | 57.965 | 39.130 | 0.00 | 0.00 | 37.61 | 3.06 |
2484 | 2509 | 4.479786 | TGTGATCCCATTATCAACGACA | 57.520 | 40.909 | 0.00 | 0.00 | 37.61 | 4.35 |
2485 | 2510 | 5.056480 | TGATGTGATCCCATTATCAACGAC | 58.944 | 41.667 | 0.00 | 0.00 | 37.61 | 4.34 |
2486 | 2511 | 5.289083 | TGATGTGATCCCATTATCAACGA | 57.711 | 39.130 | 0.00 | 0.00 | 37.61 | 3.85 |
2487 | 2512 | 6.564709 | AATGATGTGATCCCATTATCAACG | 57.435 | 37.500 | 0.00 | 0.00 | 37.61 | 4.10 |
2488 | 2513 | 7.884877 | TCCTAATGATGTGATCCCATTATCAAC | 59.115 | 37.037 | 0.00 | 0.00 | 37.61 | 3.18 |
2489 | 2514 | 7.987820 | TCCTAATGATGTGATCCCATTATCAA | 58.012 | 34.615 | 0.00 | 0.00 | 37.61 | 2.57 |
2490 | 2515 | 7.458806 | TCTCCTAATGATGTGATCCCATTATCA | 59.541 | 37.037 | 0.00 | 0.00 | 33.79 | 2.15 |
2491 | 2516 | 7.855375 | TCTCCTAATGATGTGATCCCATTATC | 58.145 | 38.462 | 0.00 | 0.00 | 33.79 | 1.75 |
2492 | 2517 | 7.819521 | TCTCCTAATGATGTGATCCCATTAT | 57.180 | 36.000 | 0.00 | 0.00 | 33.79 | 1.28 |
2493 | 2518 | 7.631510 | TTCTCCTAATGATGTGATCCCATTA | 57.368 | 36.000 | 0.00 | 0.00 | 33.21 | 1.90 |
2494 | 2519 | 6.520021 | TTCTCCTAATGATGTGATCCCATT | 57.480 | 37.500 | 0.00 | 0.00 | 35.09 | 3.16 |
2495 | 2520 | 6.273965 | TCATTCTCCTAATGATGTGATCCCAT | 59.726 | 38.462 | 0.00 | 0.00 | 32.21 | 4.00 |
2496 | 2521 | 5.608015 | TCATTCTCCTAATGATGTGATCCCA | 59.392 | 40.000 | 0.00 | 0.00 | 32.21 | 4.37 |
2497 | 2522 | 6.119240 | TCATTCTCCTAATGATGTGATCCC | 57.881 | 41.667 | 0.00 | 0.00 | 32.21 | 3.85 |
2505 | 2530 | 7.166851 | GTCCATCACATCATTCTCCTAATGAT | 58.833 | 38.462 | 7.28 | 7.28 | 45.40 | 2.45 |
2506 | 2531 | 6.100134 | TGTCCATCACATCATTCTCCTAATGA | 59.900 | 38.462 | 3.13 | 3.13 | 40.50 | 2.57 |
2507 | 2532 | 6.293698 | TGTCCATCACATCATTCTCCTAATG | 58.706 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2508 | 2533 | 6.505048 | TGTCCATCACATCATTCTCCTAAT | 57.495 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
2509 | 2534 | 5.955961 | TGTCCATCACATCATTCTCCTAA | 57.044 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2510 | 2535 | 5.662657 | TCTTGTCCATCACATCATTCTCCTA | 59.337 | 40.000 | 0.00 | 0.00 | 33.90 | 2.94 |
2511 | 2536 | 4.472470 | TCTTGTCCATCACATCATTCTCCT | 59.528 | 41.667 | 0.00 | 0.00 | 33.90 | 3.69 |
2512 | 2537 | 4.574013 | GTCTTGTCCATCACATCATTCTCC | 59.426 | 45.833 | 0.00 | 0.00 | 33.90 | 3.71 |
2513 | 2538 | 4.574013 | GGTCTTGTCCATCACATCATTCTC | 59.426 | 45.833 | 0.00 | 0.00 | 33.90 | 2.87 |
2514 | 2539 | 4.521146 | GGTCTTGTCCATCACATCATTCT | 58.479 | 43.478 | 0.00 | 0.00 | 33.90 | 2.40 |
2515 | 2540 | 3.629398 | GGGTCTTGTCCATCACATCATTC | 59.371 | 47.826 | 0.00 | 0.00 | 33.90 | 2.67 |
2516 | 2541 | 3.010472 | TGGGTCTTGTCCATCACATCATT | 59.990 | 43.478 | 0.00 | 0.00 | 33.90 | 2.57 |
2517 | 2542 | 2.577563 | TGGGTCTTGTCCATCACATCAT | 59.422 | 45.455 | 0.00 | 0.00 | 33.90 | 2.45 |
2518 | 2543 | 1.984424 | TGGGTCTTGTCCATCACATCA | 59.016 | 47.619 | 0.00 | 0.00 | 33.90 | 3.07 |
2519 | 2544 | 2.787473 | TGGGTCTTGTCCATCACATC | 57.213 | 50.000 | 0.00 | 0.00 | 33.90 | 3.06 |
2520 | 2545 | 3.624777 | GATTGGGTCTTGTCCATCACAT | 58.375 | 45.455 | 0.00 | 0.00 | 33.90 | 3.21 |
2521 | 2546 | 2.290896 | GGATTGGGTCTTGTCCATCACA | 60.291 | 50.000 | 0.00 | 0.00 | 33.82 | 3.58 |
2522 | 2547 | 2.025887 | AGGATTGGGTCTTGTCCATCAC | 60.026 | 50.000 | 0.00 | 0.00 | 33.82 | 3.06 |
2523 | 2548 | 2.278245 | AGGATTGGGTCTTGTCCATCA | 58.722 | 47.619 | 0.00 | 0.00 | 33.82 | 3.07 |
2524 | 2549 | 4.455606 | CTTAGGATTGGGTCTTGTCCATC | 58.544 | 47.826 | 0.00 | 0.00 | 33.82 | 3.51 |
2525 | 2550 | 3.372025 | GCTTAGGATTGGGTCTTGTCCAT | 60.372 | 47.826 | 0.00 | 0.00 | 33.82 | 3.41 |
2526 | 2551 | 2.026262 | GCTTAGGATTGGGTCTTGTCCA | 60.026 | 50.000 | 0.00 | 0.00 | 33.12 | 4.02 |
2527 | 2552 | 2.644676 | GCTTAGGATTGGGTCTTGTCC | 58.355 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
2528 | 2553 | 2.644676 | GGCTTAGGATTGGGTCTTGTC | 58.355 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2529 | 2554 | 2.808906 | GGCTTAGGATTGGGTCTTGT | 57.191 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.