Multiple sequence alignment - TraesCS5B01G519500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G519500 chr5B 100.000 3533 0 0 1 3533 682181491 682185023 0.000000e+00 6525
1 TraesCS5B01G519500 chr5B 84.979 719 97 9 1887 2596 682951321 682952037 0.000000e+00 719
2 TraesCS5B01G519500 chr5B 82.890 865 83 22 2694 3533 682194234 682195058 0.000000e+00 717
3 TraesCS5B01G519500 chr5B 86.372 521 62 7 3013 3533 682952453 682952964 8.560000e-156 560
4 TraesCS5B01G519500 chr4A 86.703 1271 117 23 1621 2856 627819685 627820938 0.000000e+00 1363
5 TraesCS5B01G519500 chr4A 86.014 858 70 20 2702 3528 627904523 627905361 0.000000e+00 874
6 TraesCS5B01G519500 chr4A 83.369 469 46 19 1131 1586 627819234 627819683 4.250000e-109 405
7 TraesCS5B01G519500 chr4A 92.632 190 14 0 3344 3533 627821467 627821656 1.250000e-69 274
8 TraesCS5B01G519500 chr4A 76.894 528 62 30 2653 3122 627820736 627821261 9.800000e-61 244
9 TraesCS5B01G519500 chr4A 81.164 292 33 10 1 272 627817767 627818056 7.680000e-52 215
10 TraesCS5B01G519500 chr4A 72.948 743 54 46 425 1081 627818543 627819224 4.790000e-24 122
11 TraesCS5B01G519500 chr5D 89.214 751 77 4 1836 2584 539973408 539974156 0.000000e+00 935
12 TraesCS5B01G519500 chr5D 82.548 785 76 27 2770 3533 539982176 539982920 4.980000e-178 634
13 TraesCS5B01G519500 chr5D 92.032 251 20 0 2327 2577 539981585 539981835 1.560000e-93 353
14 TraesCS5B01G519500 chr5D 90.323 248 19 3 2527 2772 539981851 539982095 1.580000e-83 320
15 TraesCS5B01G519500 chr5D 86.538 104 11 2 1221 1324 539972869 539972969 1.040000e-20 111
16 TraesCS5B01G519500 chr5D 87.356 87 11 0 2042 2128 539981494 539981580 2.240000e-17 100
17 TraesCS5B01G519500 chr5A 87.591 137 17 0 3392 3528 552280591 552280455 3.650000e-35 159
18 TraesCS5B01G519500 chrUn 85.915 142 20 0 3392 3533 360425323 360425464 6.110000e-33 152
19 TraesCS5B01G519500 chrUn 85.915 142 20 0 3392 3533 390986019 390986160 6.110000e-33 152
20 TraesCS5B01G519500 chr4B 87.023 131 17 0 3398 3528 3637879 3637749 7.900000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G519500 chr5B 682181491 682185023 3532 False 6525.000000 6525 100.00000 1 3533 1 chr5B.!!$F1 3532
1 TraesCS5B01G519500 chr5B 682194234 682195058 824 False 717.000000 717 82.89000 2694 3533 1 chr5B.!!$F2 839
2 TraesCS5B01G519500 chr5B 682951321 682952964 1643 False 639.500000 719 85.67550 1887 3533 2 chr5B.!!$F3 1646
3 TraesCS5B01G519500 chr4A 627904523 627905361 838 False 874.000000 874 86.01400 2702 3528 1 chr4A.!!$F1 826
4 TraesCS5B01G519500 chr4A 627817767 627821656 3889 False 437.166667 1363 82.28500 1 3533 6 chr4A.!!$F2 3532
5 TraesCS5B01G519500 chr5D 539972869 539974156 1287 False 523.000000 935 87.87600 1221 2584 2 chr5D.!!$F1 1363
6 TraesCS5B01G519500 chr5D 539981494 539982920 1426 False 351.750000 634 88.06475 2042 3533 4 chr5D.!!$F2 1491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 948 0.034616 TGGCTTTGGAAAAATGGCCG 59.965 50.0 0.0 0.0 42.11 6.13 F
1333 1882 0.037232 GATGCGATGCCCTACCTACC 60.037 60.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 1903 0.033109 ACCAAATCAAGGGGCTAGGC 60.033 55.0 8.0 8.0 0.00 3.93 R
3316 4234 0.106918 ACAGGTGCTCCCGTTTGAAA 60.107 50.0 0.0 0.0 38.74 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.322546 GGTGATTCCCAAAGGAGCGT 60.323 55.000 0.00 0.00 45.19 5.07
81 82 5.835257 AGAGGTCAATGAACAACACAAATG 58.165 37.500 0.00 0.00 0.00 2.32
82 83 4.370917 AGGTCAATGAACAACACAAATGC 58.629 39.130 0.00 0.00 0.00 3.56
84 85 4.569966 GGTCAATGAACAACACAAATGCAA 59.430 37.500 0.00 0.00 0.00 4.08
86 87 5.063186 GTCAATGAACAACACAAATGCAACA 59.937 36.000 0.00 0.00 0.00 3.33
96 97 2.070783 CAAATGCAACATTGACTGGGC 58.929 47.619 0.00 0.00 0.00 5.36
98 99 1.563924 ATGCAACATTGACTGGGCAT 58.436 45.000 0.00 0.00 41.99 4.40
103 104 2.559668 CAACATTGACTGGGCATGAACT 59.440 45.455 0.00 0.00 0.00 3.01
111 112 2.171448 ACTGGGCATGAACTAGTGGATC 59.829 50.000 0.00 0.00 0.00 3.36
130 131 7.722728 AGTGGATCTGCATAATTATGAACACAT 59.277 33.333 26.22 10.56 35.75 3.21
132 133 8.354426 TGGATCTGCATAATTATGAACACATTG 58.646 33.333 26.22 5.82 35.75 2.82
137 138 6.256104 TGCATAATTATGAACACATTGCAAGC 59.744 34.615 26.22 8.32 33.10 4.01
158 159 2.648059 GGTAGCATCAGCAGACCAAAT 58.352 47.619 6.67 0.00 44.28 2.32
159 160 2.357009 GGTAGCATCAGCAGACCAAATG 59.643 50.000 6.67 0.00 44.28 2.32
160 161 0.815734 AGCATCAGCAGACCAAATGC 59.184 50.000 0.00 0.00 45.49 3.56
161 162 0.528924 GCATCAGCAGACCAAATGCA 59.471 50.000 0.00 0.00 46.31 3.96
162 163 1.067425 GCATCAGCAGACCAAATGCAA 60.067 47.619 0.00 0.00 46.31 4.08
163 164 2.602878 CATCAGCAGACCAAATGCAAC 58.397 47.619 0.00 0.00 46.31 4.17
165 166 2.241160 TCAGCAGACCAAATGCAACAT 58.759 42.857 0.00 0.00 46.31 2.71
167 168 3.825585 TCAGCAGACCAAATGCAACATAA 59.174 39.130 0.00 0.00 46.31 1.90
168 169 3.922240 CAGCAGACCAAATGCAACATAAC 59.078 43.478 0.00 0.00 46.31 1.89
171 172 3.511146 CAGACCAAATGCAACATAACCCT 59.489 43.478 0.00 0.00 0.00 4.34
172 173 4.704540 CAGACCAAATGCAACATAACCCTA 59.295 41.667 0.00 0.00 0.00 3.53
173 174 5.184864 CAGACCAAATGCAACATAACCCTAA 59.815 40.000 0.00 0.00 0.00 2.69
174 175 5.185056 AGACCAAATGCAACATAACCCTAAC 59.815 40.000 0.00 0.00 0.00 2.34
175 176 4.835615 ACCAAATGCAACATAACCCTAACA 59.164 37.500 0.00 0.00 0.00 2.41
180 201 5.446143 TGCAACATAACCCTAACAGTTTG 57.554 39.130 0.00 0.00 0.00 2.93
187 208 0.698818 CCCTAACAGTTTGGAGGCCT 59.301 55.000 3.86 3.86 0.00 5.19
210 231 0.669625 GCCTAGTTGTCGTCCACCAC 60.670 60.000 0.00 0.00 0.00 4.16
215 236 2.736826 TTGTCGTCCACCACCAGCA 61.737 57.895 0.00 0.00 0.00 4.41
217 238 3.157949 TCGTCCACCACCAGCACA 61.158 61.111 0.00 0.00 0.00 4.57
219 240 2.327343 CGTCCACCACCAGCACATG 61.327 63.158 0.00 0.00 0.00 3.21
220 241 1.073025 GTCCACCACCAGCACATGA 59.927 57.895 0.00 0.00 0.00 3.07
228 249 2.789842 CCAGCACATGATGGTCAGG 58.210 57.895 8.04 0.00 45.94 3.86
229 250 0.253894 CCAGCACATGATGGTCAGGA 59.746 55.000 8.04 0.00 45.94 3.86
232 253 1.841919 AGCACATGATGGTCAGGATCA 59.158 47.619 0.00 0.00 31.82 2.92
237 258 0.977627 TGATGGTCAGGATCAGGCGT 60.978 55.000 0.00 0.00 0.00 5.68
243 264 2.680352 AGGATCAGGCGTCACCGT 60.680 61.111 0.00 0.00 46.52 4.83
246 267 1.141881 GATCAGGCGTCACCGTGAT 59.858 57.895 4.13 0.00 46.52 3.06
263 284 1.340308 TGATGACAGGTTGGGCATGAG 60.340 52.381 0.00 0.00 32.48 2.90
274 295 2.191641 GCATGAGGAGGCCTGACC 59.808 66.667 12.00 6.06 31.76 4.02
275 296 2.673200 GCATGAGGAGGCCTGACCA 61.673 63.158 12.00 4.76 43.14 4.02
276 297 1.222936 CATGAGGAGGCCTGACCAC 59.777 63.158 12.00 5.29 43.14 4.16
277 298 1.229625 ATGAGGAGGCCTGACCACA 60.230 57.895 12.00 12.09 43.14 4.17
278 299 0.622738 ATGAGGAGGCCTGACCACAT 60.623 55.000 12.00 14.12 43.14 3.21
279 300 1.222936 GAGGAGGCCTGACCACATG 59.777 63.158 12.00 0.00 43.14 3.21
280 301 1.539869 AGGAGGCCTGACCACATGT 60.540 57.895 12.00 0.00 43.14 3.21
282 303 0.251341 GGAGGCCTGACCACATGTTT 60.251 55.000 12.00 0.00 43.14 2.83
286 307 1.270550 GGCCTGACCACATGTTTCTTG 59.729 52.381 0.00 0.00 38.86 3.02
287 308 2.229792 GCCTGACCACATGTTTCTTGA 58.770 47.619 0.00 0.00 0.00 3.02
288 309 2.227388 GCCTGACCACATGTTTCTTGAG 59.773 50.000 0.00 0.00 0.00 3.02
289 310 2.816087 CCTGACCACATGTTTCTTGAGG 59.184 50.000 0.00 0.00 0.00 3.86
295 758 3.553508 CCACATGTTTCTTGAGGCTTTGG 60.554 47.826 0.00 0.00 0.00 3.28
304 767 2.151502 TGAGGCTTTGGGAAACAACA 57.848 45.000 0.00 0.00 39.19 3.33
309 772 1.133407 GCTTTGGGAAACAACACGACA 59.867 47.619 0.00 0.00 39.19 4.35
310 773 2.223711 GCTTTGGGAAACAACACGACAT 60.224 45.455 0.00 0.00 39.19 3.06
316 779 2.408704 GGAAACAACACGACATCTCGAG 59.591 50.000 5.93 5.93 43.06 4.04
317 780 3.305964 GAAACAACACGACATCTCGAGA 58.694 45.455 19.19 19.19 43.06 4.04
318 781 2.333389 ACAACACGACATCTCGAGAC 57.667 50.000 19.30 4.17 43.06 3.36
319 782 1.068472 ACAACACGACATCTCGAGACC 60.068 52.381 19.30 9.16 43.06 3.85
320 783 0.168348 AACACGACATCTCGAGACCG 59.832 55.000 19.30 21.97 43.06 4.79
321 784 1.583967 CACGACATCTCGAGACCGC 60.584 63.158 19.30 8.66 43.06 5.68
322 785 2.024871 CGACATCTCGAGACCGCC 59.975 66.667 19.30 3.46 43.06 6.13
323 786 2.473760 CGACATCTCGAGACCGCCT 61.474 63.158 19.30 0.00 43.06 5.52
324 787 1.357334 GACATCTCGAGACCGCCTC 59.643 63.158 19.30 4.19 38.55 4.70
325 788 2.065906 GACATCTCGAGACCGCCTCC 62.066 65.000 19.30 0.00 38.71 4.30
326 789 1.826054 CATCTCGAGACCGCCTCCT 60.826 63.158 19.30 0.00 38.71 3.69
327 790 1.527380 ATCTCGAGACCGCCTCCTC 60.527 63.158 19.30 0.00 38.71 3.71
343 806 4.578898 TCGCGTGTGACTGCCGTT 62.579 61.111 5.77 0.00 0.00 4.44
356 819 2.990967 CCGTTGCCCACATGCCTT 60.991 61.111 0.00 0.00 0.00 4.35
371 834 1.300971 GCCTTGAGTTGCATCGCTCA 61.301 55.000 10.76 10.76 39.66 4.26
372 835 0.725686 CCTTGAGTTGCATCGCTCAG 59.274 55.000 13.37 9.41 41.93 3.35
373 836 1.673923 CCTTGAGTTGCATCGCTCAGA 60.674 52.381 13.37 6.98 41.93 3.27
374 837 1.392853 CTTGAGTTGCATCGCTCAGAC 59.607 52.381 13.37 0.00 41.93 3.51
375 838 0.390340 TGAGTTGCATCGCTCAGACC 60.390 55.000 10.76 0.00 36.89 3.85
376 839 0.108424 GAGTTGCATCGCTCAGACCT 60.108 55.000 8.11 0.00 0.00 3.85
377 840 0.390866 AGTTGCATCGCTCAGACCTG 60.391 55.000 0.00 0.00 0.00 4.00
378 841 1.078918 TTGCATCGCTCAGACCTGG 60.079 57.895 0.00 0.00 0.00 4.45
379 842 2.894387 GCATCGCTCAGACCTGGC 60.894 66.667 0.00 0.00 0.00 4.85
380 843 2.898738 CATCGCTCAGACCTGGCT 59.101 61.111 0.00 0.00 0.00 4.75
381 844 1.220206 CATCGCTCAGACCTGGCTT 59.780 57.895 0.00 0.00 0.00 4.35
382 845 0.392193 CATCGCTCAGACCTGGCTTT 60.392 55.000 0.00 0.00 0.00 3.51
383 846 0.392193 ATCGCTCAGACCTGGCTTTG 60.392 55.000 0.00 0.00 0.00 2.77
384 847 2.037136 CGCTCAGACCTGGCTTTGG 61.037 63.158 0.00 0.00 0.00 3.28
385 848 1.376466 GCTCAGACCTGGCTTTGGA 59.624 57.895 0.00 0.00 0.00 3.53
386 849 0.250901 GCTCAGACCTGGCTTTGGAA 60.251 55.000 0.00 0.00 0.00 3.53
387 850 1.819305 GCTCAGACCTGGCTTTGGAAA 60.819 52.381 0.00 0.00 0.00 3.13
388 851 2.586425 CTCAGACCTGGCTTTGGAAAA 58.414 47.619 0.00 0.00 0.00 2.29
389 852 2.958355 CTCAGACCTGGCTTTGGAAAAA 59.042 45.455 0.00 0.00 0.00 1.94
390 853 3.575687 CTCAGACCTGGCTTTGGAAAAAT 59.424 43.478 0.00 0.00 0.00 1.82
391 854 3.321682 TCAGACCTGGCTTTGGAAAAATG 59.678 43.478 0.00 0.00 0.00 2.32
392 855 3.070015 CAGACCTGGCTTTGGAAAAATGT 59.930 43.478 0.00 0.00 0.00 2.71
393 856 3.321968 AGACCTGGCTTTGGAAAAATGTC 59.678 43.478 0.00 0.00 0.00 3.06
394 857 2.368548 ACCTGGCTTTGGAAAAATGTCC 59.631 45.455 0.00 0.00 38.27 4.02
395 858 2.610232 CCTGGCTTTGGAAAAATGTCCG 60.610 50.000 0.00 0.00 40.96 4.79
396 859 2.295909 CTGGCTTTGGAAAAATGTCCGA 59.704 45.455 0.00 0.00 40.96 4.55
397 860 2.896685 TGGCTTTGGAAAAATGTCCGAT 59.103 40.909 0.00 0.00 40.96 4.18
398 861 3.323403 TGGCTTTGGAAAAATGTCCGATT 59.677 39.130 0.00 0.00 40.96 3.34
399 862 3.926527 GGCTTTGGAAAAATGTCCGATTC 59.073 43.478 0.00 0.00 40.96 2.52
400 863 4.555262 GCTTTGGAAAAATGTCCGATTCA 58.445 39.130 0.00 0.00 40.96 2.57
401 864 4.385748 GCTTTGGAAAAATGTCCGATTCAC 59.614 41.667 0.00 0.00 40.96 3.18
402 865 4.513198 TTGGAAAAATGTCCGATTCACC 57.487 40.909 0.00 0.00 40.96 4.02
403 866 2.823154 TGGAAAAATGTCCGATTCACCC 59.177 45.455 0.00 0.00 40.96 4.61
404 867 2.159435 GGAAAAATGTCCGATTCACCCG 60.159 50.000 0.00 0.00 0.00 5.28
405 868 2.194201 AAAATGTCCGATTCACCCGT 57.806 45.000 0.00 0.00 0.00 5.28
406 869 2.194201 AAATGTCCGATTCACCCGTT 57.806 45.000 0.00 0.00 0.00 4.44
407 870 1.734163 AATGTCCGATTCACCCGTTC 58.266 50.000 0.00 0.00 0.00 3.95
408 871 0.107848 ATGTCCGATTCACCCGTTCC 60.108 55.000 0.00 0.00 0.00 3.62
409 872 1.449070 GTCCGATTCACCCGTTCCC 60.449 63.158 0.00 0.00 0.00 3.97
410 873 1.914263 TCCGATTCACCCGTTCCCA 60.914 57.895 0.00 0.00 0.00 4.37
411 874 1.743995 CCGATTCACCCGTTCCCAC 60.744 63.158 0.00 0.00 0.00 4.61
412 875 1.743995 CGATTCACCCGTTCCCACC 60.744 63.158 0.00 0.00 0.00 4.61
413 876 1.683441 GATTCACCCGTTCCCACCT 59.317 57.895 0.00 0.00 0.00 4.00
414 877 0.392595 GATTCACCCGTTCCCACCTC 60.393 60.000 0.00 0.00 0.00 3.85
415 878 1.848886 ATTCACCCGTTCCCACCTCC 61.849 60.000 0.00 0.00 0.00 4.30
416 879 2.928396 CACCCGTTCCCACCTCCT 60.928 66.667 0.00 0.00 0.00 3.69
417 880 2.606826 ACCCGTTCCCACCTCCTC 60.607 66.667 0.00 0.00 0.00 3.71
418 881 3.771160 CCCGTTCCCACCTCCTCG 61.771 72.222 0.00 0.00 0.00 4.63
419 882 4.452733 CCGTTCCCACCTCCTCGC 62.453 72.222 0.00 0.00 0.00 5.03
420 883 4.796231 CGTTCCCACCTCCTCGCG 62.796 72.222 0.00 0.00 0.00 5.87
421 884 3.692406 GTTCCCACCTCCTCGCGT 61.692 66.667 5.77 0.00 0.00 6.01
422 885 3.691342 TTCCCACCTCCTCGCGTG 61.691 66.667 5.77 2.75 0.00 5.34
423 886 4.988716 TCCCACCTCCTCGCGTGT 62.989 66.667 5.77 0.00 0.00 4.49
424 887 4.742201 CCCACCTCCTCGCGTGTG 62.742 72.222 5.77 7.21 0.00 3.82
425 888 3.680786 CCACCTCCTCGCGTGTGA 61.681 66.667 5.77 2.55 0.00 3.58
426 889 2.430921 CACCTCCTCGCGTGTGAC 60.431 66.667 5.77 0.00 0.00 3.67
427 890 3.681835 ACCTCCTCGCGTGTGACC 61.682 66.667 5.77 0.00 0.00 4.02
428 891 4.778415 CCTCCTCGCGTGTGACCG 62.778 72.222 5.77 0.00 0.00 4.79
447 910 4.790962 CGCTGCCCACATGCCTCT 62.791 66.667 0.00 0.00 0.00 3.69
448 911 2.591753 GCTGCCCACATGCCTCTA 59.408 61.111 0.00 0.00 0.00 2.43
449 912 1.525535 GCTGCCCACATGCCTCTAG 60.526 63.158 0.00 0.00 0.00 2.43
450 913 1.910722 CTGCCCACATGCCTCTAGT 59.089 57.895 0.00 0.00 0.00 2.57
451 914 0.254178 CTGCCCACATGCCTCTAGTT 59.746 55.000 0.00 0.00 0.00 2.24
452 915 0.035152 TGCCCACATGCCTCTAGTTG 60.035 55.000 0.00 0.00 0.00 3.16
453 916 1.379642 GCCCACATGCCTCTAGTTGC 61.380 60.000 0.00 0.00 0.00 4.17
454 917 0.035152 CCCACATGCCTCTAGTTGCA 60.035 55.000 10.53 10.53 42.52 4.08
456 919 1.945394 CCACATGCCTCTAGTTGCATC 59.055 52.381 15.63 0.00 45.98 3.91
457 920 1.596260 CACATGCCTCTAGTTGCATCG 59.404 52.381 15.63 13.71 45.98 3.84
458 921 0.585357 CATGCCTCTAGTTGCATCGC 59.415 55.000 15.63 0.00 45.98 4.58
459 922 0.467384 ATGCCTCTAGTTGCATCGCT 59.533 50.000 13.58 0.00 44.58 4.93
460 923 0.250234 TGCCTCTAGTTGCATCGCTT 59.750 50.000 5.08 0.00 31.31 4.68
463 926 1.134699 CCTCTAGTTGCATCGCTTGGA 60.135 52.381 0.00 0.00 0.00 3.53
480 943 2.688477 TGGACCTGGCTTTGGAAAAAT 58.312 42.857 0.00 0.00 0.00 1.82
485 948 0.034616 TGGCTTTGGAAAAATGGCCG 59.965 50.000 0.00 0.00 42.11 6.13
486 949 0.320050 GGCTTTGGAAAAATGGCCGA 59.680 50.000 0.00 0.00 0.00 5.54
487 950 1.066215 GGCTTTGGAAAAATGGCCGAT 60.066 47.619 0.00 0.00 0.00 4.18
490 953 3.864160 GCTTTGGAAAAATGGCCGATTCA 60.864 43.478 0.00 0.00 0.00 2.57
500 963 2.666207 CCGATTCACCCGTTCCCA 59.334 61.111 0.00 0.00 0.00 4.37
502 965 1.743995 CGATTCACCCGTTCCCACC 60.744 63.158 0.00 0.00 0.00 4.61
521 984 4.305956 AGCCAGGCCCAAAGGTGG 62.306 66.667 8.22 0.00 45.53 4.61
522 985 4.621087 GCCAGGCCCAAAGGTGGT 62.621 66.667 0.00 0.00 44.30 4.16
525 988 0.178947 CCAGGCCCAAAGGTGGTTTA 60.179 55.000 0.00 0.00 44.30 2.01
528 991 0.973632 GGCCCAAAGGTGGTTTAAGG 59.026 55.000 0.00 0.00 44.30 2.69
529 992 1.712056 GCCCAAAGGTGGTTTAAGGT 58.288 50.000 0.00 0.00 44.30 3.50
530 993 2.043992 GCCCAAAGGTGGTTTAAGGTT 58.956 47.619 0.00 0.00 44.30 3.50
531 994 2.036733 GCCCAAAGGTGGTTTAAGGTTC 59.963 50.000 0.00 0.00 44.30 3.62
532 995 2.295070 CCCAAAGGTGGTTTAAGGTTCG 59.705 50.000 0.00 0.00 44.30 3.95
533 996 2.953648 CCAAAGGTGGTTTAAGGTTCGT 59.046 45.455 0.00 0.00 40.42 3.85
534 997 3.243267 CCAAAGGTGGTTTAAGGTTCGTG 60.243 47.826 0.00 0.00 40.42 4.35
535 998 1.601166 AGGTGGTTTAAGGTTCGTGC 58.399 50.000 0.00 0.00 0.00 5.34
536 999 0.236449 GGTGGTTTAAGGTTCGTGCG 59.764 55.000 0.00 0.00 0.00 5.34
537 1000 0.236449 GTGGTTTAAGGTTCGTGCGG 59.764 55.000 0.00 0.00 0.00 5.69
538 1001 0.885596 TGGTTTAAGGTTCGTGCGGG 60.886 55.000 0.00 0.00 0.00 6.13
539 1002 0.886043 GGTTTAAGGTTCGTGCGGGT 60.886 55.000 0.00 0.00 0.00 5.28
540 1003 0.946528 GTTTAAGGTTCGTGCGGGTT 59.053 50.000 0.00 0.00 0.00 4.11
541 1004 2.142319 GTTTAAGGTTCGTGCGGGTTA 58.858 47.619 0.00 0.00 0.00 2.85
542 1005 2.083167 TTAAGGTTCGTGCGGGTTAG 57.917 50.000 0.00 0.00 0.00 2.34
553 1016 3.372822 CGTGCGGGTTAGTATTTTGATGT 59.627 43.478 0.00 0.00 0.00 3.06
555 1018 4.393680 GTGCGGGTTAGTATTTTGATGTGA 59.606 41.667 0.00 0.00 0.00 3.58
556 1019 4.393680 TGCGGGTTAGTATTTTGATGTGAC 59.606 41.667 0.00 0.00 0.00 3.67
557 1020 4.201881 GCGGGTTAGTATTTTGATGTGACC 60.202 45.833 0.00 0.00 0.00 4.02
560 1023 6.479001 CGGGTTAGTATTTTGATGTGACCTAG 59.521 42.308 0.00 0.00 0.00 3.02
561 1024 6.260271 GGGTTAGTATTTTGATGTGACCTAGC 59.740 42.308 0.00 0.00 0.00 3.42
566 1029 5.587388 ATTTTGATGTGACCTAGCCAATG 57.413 39.130 0.00 0.00 0.00 2.82
570 1033 4.009675 TGATGTGACCTAGCCAATGAAAC 58.990 43.478 0.00 0.00 0.00 2.78
575 1038 3.181434 TGACCTAGCCAATGAAACAGGTT 60.181 43.478 0.00 0.00 36.54 3.50
583 1046 7.066307 AGCCAATGAAACAGGTTAAATTCTT 57.934 32.000 0.00 0.00 0.00 2.52
584 1047 7.508687 AGCCAATGAAACAGGTTAAATTCTTT 58.491 30.769 0.00 0.00 0.00 2.52
585 1048 7.442062 AGCCAATGAAACAGGTTAAATTCTTTG 59.558 33.333 0.00 0.00 37.01 2.77
586 1049 8.086851 CCAATGAAACAGGTTAAATTCTTTGG 57.913 34.615 13.90 13.90 43.99 3.28
587 1050 7.714813 CCAATGAAACAGGTTAAATTCTTTGGT 59.285 33.333 17.24 0.00 44.19 3.67
590 1053 7.488322 TGAAACAGGTTAAATTCTTTGGTCAG 58.512 34.615 0.00 0.00 0.00 3.51
592 1055 5.454966 ACAGGTTAAATTCTTTGGTCAGGT 58.545 37.500 0.00 0.00 0.00 4.00
593 1056 5.897250 ACAGGTTAAATTCTTTGGTCAGGTT 59.103 36.000 0.00 0.00 0.00 3.50
594 1057 6.183360 ACAGGTTAAATTCTTTGGTCAGGTTG 60.183 38.462 0.00 0.00 0.00 3.77
597 1066 3.611025 AATTCTTTGGTCAGGTTGGGA 57.389 42.857 0.00 0.00 0.00 4.37
607 1076 2.000701 AGGTTGGGATGGATGCGGA 61.001 57.895 0.00 0.00 0.00 5.54
612 1081 1.823899 GGGATGGATGCGGACAACC 60.824 63.158 0.00 0.00 39.16 3.77
615 1084 4.909678 TGGATGCGGACAACCAAA 57.090 50.000 0.00 0.00 44.98 3.28
616 1085 2.336341 TGGATGCGGACAACCAAAC 58.664 52.632 0.00 0.00 44.98 2.93
617 1086 1.209127 GGATGCGGACAACCAAACG 59.791 57.895 0.00 0.00 38.58 3.60
620 1089 3.944233 GCGGACAACCAAACGCGT 61.944 61.111 5.58 5.58 42.66 6.01
621 1090 2.247267 CGGACAACCAAACGCGTC 59.753 61.111 14.44 0.00 35.59 5.19
622 1091 2.635338 GGACAACCAAACGCGTCC 59.365 61.111 14.44 2.14 41.08 4.79
623 1092 2.181521 GGACAACCAAACGCGTCCA 61.182 57.895 14.44 0.00 45.96 4.02
624 1093 1.010462 GACAACCAAACGCGTCCAC 60.010 57.895 14.44 0.00 0.00 4.02
625 1094 2.052590 CAACCAAACGCGTCCACG 60.053 61.111 14.44 2.77 43.27 4.94
626 1095 3.273834 AACCAAACGCGTCCACGG 61.274 61.111 14.44 13.43 40.23 4.94
627 1096 4.534141 ACCAAACGCGTCCACGGT 62.534 61.111 14.44 14.14 40.23 4.83
628 1097 4.007940 CCAAACGCGTCCACGGTG 62.008 66.667 14.44 0.00 40.23 4.94
629 1098 3.266376 CAAACGCGTCCACGGTGT 61.266 61.111 14.44 0.00 40.23 4.16
630 1099 1.950130 CAAACGCGTCCACGGTGTA 60.950 57.895 14.44 0.00 40.23 2.90
631 1100 1.005867 AAACGCGTCCACGGTGTAT 60.006 52.632 14.44 0.00 40.23 2.29
632 1101 0.600782 AAACGCGTCCACGGTGTATT 60.601 50.000 14.44 0.00 40.23 1.89
639 1108 2.774687 GTCCACGGTGTATTTCCAGTT 58.225 47.619 7.45 0.00 0.00 3.16
640 1109 2.740447 GTCCACGGTGTATTTCCAGTTC 59.260 50.000 7.45 0.00 0.00 3.01
643 1112 3.374058 CCACGGTGTATTTCCAGTTCATC 59.626 47.826 7.45 0.00 0.00 2.92
649 1118 1.086696 ATTTCCAGTTCATCACGGCG 58.913 50.000 4.80 4.80 0.00 6.46
650 1119 1.573829 TTTCCAGTTCATCACGGCGC 61.574 55.000 6.90 0.00 0.00 6.53
663 1132 1.736645 CGGCGCGAGAAGGAAAAGA 60.737 57.895 12.10 0.00 0.00 2.52
673 1142 1.538950 GAAGGAAAAGAGCACCTGCAG 59.461 52.381 6.78 6.78 45.16 4.41
674 1143 0.251077 AGGAAAAGAGCACCTGCAGG 60.251 55.000 31.60 31.60 45.16 4.85
675 1144 0.250901 GGAAAAGAGCACCTGCAGGA 60.251 55.000 39.19 0.00 45.16 3.86
680 1149 1.055040 AGAGCACCTGCAGGATATCC 58.945 55.000 39.19 21.36 45.16 2.59
688 1157 0.106708 TGCAGGATATCCAACGAGGC 59.893 55.000 23.81 15.65 38.89 4.70
694 1163 4.707448 CAGGATATCCAACGAGGCTACTAT 59.293 45.833 23.81 0.00 38.89 2.12
695 1164 5.886474 CAGGATATCCAACGAGGCTACTATA 59.114 44.000 23.81 0.00 38.89 1.31
696 1165 6.038825 CAGGATATCCAACGAGGCTACTATAG 59.961 46.154 23.81 0.00 38.89 1.31
697 1166 5.887035 GGATATCCAACGAGGCTACTATAGT 59.113 44.000 17.34 10.87 37.29 2.12
698 1167 6.183360 GGATATCCAACGAGGCTACTATAGTG 60.183 46.154 17.34 6.78 37.29 2.74
699 1168 3.894759 TCCAACGAGGCTACTATAGTGT 58.105 45.455 15.90 0.51 37.29 3.55
700 1169 3.630769 TCCAACGAGGCTACTATAGTGTG 59.369 47.826 15.90 9.17 37.29 3.82
701 1170 3.243434 CCAACGAGGCTACTATAGTGTGG 60.243 52.174 15.90 6.78 0.00 4.17
702 1171 3.294038 ACGAGGCTACTATAGTGTGGT 57.706 47.619 15.90 2.52 0.00 4.16
725 1194 1.518572 GGTGGGTGATGCGTCTACG 60.519 63.158 7.58 0.00 43.27 3.51
767 1249 1.729517 ACACCTGCAAAAACAAAACGC 59.270 42.857 0.00 0.00 0.00 4.84
768 1250 1.999024 CACCTGCAAAAACAAAACGCT 59.001 42.857 0.00 0.00 0.00 5.07
769 1251 2.029124 CACCTGCAAAAACAAAACGCTC 59.971 45.455 0.00 0.00 0.00 5.03
781 1272 3.526825 AACGCTCTGTTTCGTTTGC 57.473 47.368 0.00 0.00 45.25 3.68
817 1308 3.730761 GCGCAAGTGGCTGGACTG 61.731 66.667 0.30 0.00 41.67 3.51
819 1310 2.431683 GCAAGTGGCTGGACTGGA 59.568 61.111 0.00 0.00 40.25 3.86
820 1311 1.673665 GCAAGTGGCTGGACTGGAG 60.674 63.158 0.00 0.00 40.25 3.86
821 1312 1.673665 CAAGTGGCTGGACTGGAGC 60.674 63.158 0.00 0.00 35.57 4.70
826 1317 3.005539 GCTGGACTGGAGCCTGGA 61.006 66.667 0.00 0.00 0.00 3.86
827 1318 3.028921 GCTGGACTGGAGCCTGGAG 62.029 68.421 0.00 0.00 0.00 3.86
849 1344 2.697644 CCCCAAGGGCCATCTCCT 60.698 66.667 6.18 0.00 35.35 3.69
850 1345 2.761465 CCCCAAGGGCCATCTCCTC 61.761 68.421 6.18 0.00 35.35 3.71
851 1346 1.695597 CCCAAGGGCCATCTCCTCT 60.696 63.158 6.18 0.00 32.59 3.69
854 1349 1.764054 AAGGGCCATCTCCTCTCCG 60.764 63.158 6.18 0.00 32.59 4.63
855 1350 3.237741 GGGCCATCTCCTCTCCGG 61.238 72.222 4.39 0.00 0.00 5.14
856 1351 3.934962 GGCCATCTCCTCTCCGGC 61.935 72.222 0.00 0.00 42.21 6.13
858 1353 2.123077 CCATCTCCTCTCCGGCCT 60.123 66.667 0.00 0.00 0.00 5.19
859 1354 2.206536 CCATCTCCTCTCCGGCCTC 61.207 68.421 0.00 0.00 0.00 4.70
880 1388 4.680537 ACCTCTGCCGAGACCCGT 62.681 66.667 6.73 0.00 39.74 5.28
881 1389 3.382832 CCTCTGCCGAGACCCGTT 61.383 66.667 6.73 0.00 39.74 4.44
884 1406 4.452733 CTGCCGAGACCCGTTCCC 62.453 72.222 0.00 0.00 36.31 3.97
924 1450 1.609061 CCACGCCACAGACAAGAGAAT 60.609 52.381 0.00 0.00 0.00 2.40
950 1477 1.687493 GAGGTGTGGGGAGGAGAGG 60.687 68.421 0.00 0.00 0.00 3.69
951 1478 3.403558 GGTGTGGGGAGGAGAGGC 61.404 72.222 0.00 0.00 0.00 4.70
952 1479 2.607750 GTGTGGGGAGGAGAGGCA 60.608 66.667 0.00 0.00 0.00 4.75
953 1480 2.284921 TGTGGGGAGGAGAGGCAG 60.285 66.667 0.00 0.00 0.00 4.85
954 1481 3.791586 GTGGGGAGGAGAGGCAGC 61.792 72.222 0.00 0.00 0.00 5.25
959 1486 4.527583 GAGGAGAGGCAGCCGCAG 62.528 72.222 18.51 0.00 41.24 5.18
983 1510 2.815589 GCAGGGAAGAAGAGAAAGCCAA 60.816 50.000 0.00 0.00 0.00 4.52
1021 1559 2.547997 CGTGCGTACGTACTGCTAC 58.452 57.895 29.27 24.39 44.99 3.58
1022 1560 0.858961 CGTGCGTACGTACTGCTACC 60.859 60.000 29.27 20.26 44.99 3.18
1023 1561 0.524180 GTGCGTACGTACTGCTACCC 60.524 60.000 29.00 17.39 0.00 3.69
1046 1589 2.356667 CCTTCCTCCCTGGTTGGC 59.643 66.667 0.00 0.00 37.07 4.52
1047 1590 2.356667 CTTCCTCCCTGGTTGGCC 59.643 66.667 0.00 0.00 37.07 5.36
1081 1628 4.838152 CCGCATCTCCACCCACCG 62.838 72.222 0.00 0.00 0.00 4.94
1097 1644 3.030308 CGCGCGTGGCTATCGAAT 61.030 61.111 24.19 0.00 40.44 3.34
1098 1645 2.846918 GCGCGTGGCTATCGAATC 59.153 61.111 8.43 0.00 39.11 2.52
1099 1646 2.988549 GCGCGTGGCTATCGAATCG 61.989 63.158 8.43 0.00 39.11 3.34
1100 1647 2.846918 GCGTGGCTATCGAATCGC 59.153 61.111 0.00 0.00 37.17 4.58
1101 1648 1.949133 GCGTGGCTATCGAATCGCA 60.949 57.895 0.00 0.00 42.54 5.10
1102 1649 1.487452 GCGTGGCTATCGAATCGCAA 61.487 55.000 0.00 0.00 42.54 4.85
1103 1650 1.139989 CGTGGCTATCGAATCGCAAT 58.860 50.000 0.00 0.00 0.00 3.56
1104 1651 1.125021 CGTGGCTATCGAATCGCAATC 59.875 52.381 0.00 0.00 0.00 2.67
1105 1652 1.125021 GTGGCTATCGAATCGCAATCG 59.875 52.381 0.00 0.00 41.53 3.34
1121 1668 1.827394 TCGAACCCCGATTCATCCC 59.173 57.895 0.00 0.00 43.23 3.85
1122 1669 1.594293 CGAACCCCGATTCATCCCG 60.594 63.158 0.00 0.00 41.76 5.14
1123 1670 1.227853 GAACCCCGATTCATCCCGG 60.228 63.158 0.00 0.00 44.94 5.73
1124 1671 3.415650 AACCCCGATTCATCCCGGC 62.416 63.158 0.00 0.00 44.07 6.13
1125 1672 4.643387 CCCCGATTCATCCCGGCC 62.643 72.222 0.00 0.00 44.07 6.13
1126 1673 4.643387 CCCGATTCATCCCGGCCC 62.643 72.222 0.00 0.00 44.07 5.80
1127 1674 3.872603 CCGATTCATCCCGGCCCA 61.873 66.667 0.00 0.00 39.22 5.36
1128 1675 2.281070 CGATTCATCCCGGCCCAG 60.281 66.667 0.00 0.00 0.00 4.45
1129 1676 2.113986 GATTCATCCCGGCCCAGG 59.886 66.667 0.00 0.00 0.00 4.45
1150 1697 0.737715 GTCCATCTGTGACTGCGTCC 60.738 60.000 6.30 0.20 0.00 4.79
1155 1702 3.249973 CTGTGACTGCGTCCGACGA 62.250 63.158 24.78 8.75 46.05 4.20
1168 1715 2.844804 GTCCGACGACTTTCTTGATACG 59.155 50.000 0.00 0.00 35.99 3.06
1169 1716 2.485426 TCCGACGACTTTCTTGATACGT 59.515 45.455 0.00 0.00 36.71 3.57
1170 1717 3.684305 TCCGACGACTTTCTTGATACGTA 59.316 43.478 0.00 0.00 34.26 3.57
1174 1721 6.290956 CCGACGACTTTCTTGATACGTATTTC 60.291 42.308 9.92 0.00 34.26 2.17
1179 1726 9.807386 CGACTTTCTTGATACGTATTTCTTTTT 57.193 29.630 9.92 0.00 0.00 1.94
1215 1764 3.261580 TCACCATTTGTATCGCACTCTG 58.738 45.455 0.00 0.00 0.00 3.35
1216 1765 3.002791 CACCATTTGTATCGCACTCTGT 58.997 45.455 0.00 0.00 0.00 3.41
1217 1766 3.002791 ACCATTTGTATCGCACTCTGTG 58.997 45.455 0.00 0.00 36.51 3.66
1218 1767 3.002791 CCATTTGTATCGCACTCTGTGT 58.997 45.455 0.00 0.00 35.75 3.72
1219 1768 4.180817 CCATTTGTATCGCACTCTGTGTA 58.819 43.478 0.00 0.00 35.75 2.90
1326 1875 1.069765 CCGTAAGATGCGATGCCCT 59.930 57.895 0.00 0.00 43.02 5.19
1330 1879 1.344763 GTAAGATGCGATGCCCTACCT 59.655 52.381 0.00 0.00 0.00 3.08
1331 1880 1.717032 AAGATGCGATGCCCTACCTA 58.283 50.000 0.00 0.00 0.00 3.08
1333 1882 0.037232 GATGCGATGCCCTACCTACC 60.037 60.000 0.00 0.00 0.00 3.18
1334 1883 0.471971 ATGCGATGCCCTACCTACCT 60.472 55.000 0.00 0.00 0.00 3.08
1335 1884 1.367840 GCGATGCCCTACCTACCTG 59.632 63.158 0.00 0.00 0.00 4.00
1336 1885 1.113517 GCGATGCCCTACCTACCTGA 61.114 60.000 0.00 0.00 0.00 3.86
1337 1886 0.674534 CGATGCCCTACCTACCTGAC 59.325 60.000 0.00 0.00 0.00 3.51
1338 1887 1.754555 CGATGCCCTACCTACCTGACT 60.755 57.143 0.00 0.00 0.00 3.41
1339 1888 2.488528 CGATGCCCTACCTACCTGACTA 60.489 54.545 0.00 0.00 0.00 2.59
1340 1889 3.573695 GATGCCCTACCTACCTGACTAA 58.426 50.000 0.00 0.00 0.00 2.24
1348 1897 5.827267 CCTACCTACCTGACTAAGACTAACC 59.173 48.000 0.00 0.00 0.00 2.85
1354 1903 6.837471 ACCTGACTAAGACTAACCAACTAG 57.163 41.667 0.00 0.00 0.00 2.57
1355 1904 5.185442 ACCTGACTAAGACTAACCAACTAGC 59.815 44.000 0.00 0.00 0.00 3.42
1442 2007 4.160329 GTCCCATCCATCATACTACCAGA 58.840 47.826 0.00 0.00 0.00 3.86
1509 2089 5.124138 CCTTATATACGCTAGCTAGTGCAGT 59.876 44.000 29.78 21.03 42.74 4.40
1510 2090 6.349445 CCTTATATACGCTAGCTAGTGCAGTT 60.349 42.308 29.78 15.58 42.74 3.16
1511 2091 7.148289 CCTTATATACGCTAGCTAGTGCAGTTA 60.148 40.741 29.78 17.09 42.74 2.24
1512 2092 2.563471 ACGCTAGCTAGTGCAGTTAC 57.437 50.000 29.78 7.35 42.74 2.50
1526 2106 2.031682 GCAGTTACTTTCAGTGCACCAG 60.032 50.000 14.63 6.92 39.93 4.00
1527 2107 2.031682 CAGTTACTTTCAGTGCACCAGC 60.032 50.000 14.63 0.00 42.57 4.85
1586 2166 3.604582 ACATCTTTTGCTACTGCCTCTC 58.395 45.455 0.00 0.00 38.71 3.20
1587 2167 3.262915 ACATCTTTTGCTACTGCCTCTCT 59.737 43.478 0.00 0.00 38.71 3.10
1588 2168 3.325293 TCTTTTGCTACTGCCTCTCTG 57.675 47.619 0.00 0.00 38.71 3.35
1589 2169 2.899900 TCTTTTGCTACTGCCTCTCTGA 59.100 45.455 0.00 0.00 38.71 3.27
1590 2170 2.751166 TTTGCTACTGCCTCTCTGAC 57.249 50.000 0.00 0.00 38.71 3.51
1591 2171 1.930251 TTGCTACTGCCTCTCTGACT 58.070 50.000 0.00 0.00 38.71 3.41
1592 2172 1.180907 TGCTACTGCCTCTCTGACTG 58.819 55.000 0.00 0.00 38.71 3.51
1593 2173 1.181786 GCTACTGCCTCTCTGACTGT 58.818 55.000 0.00 0.00 0.00 3.55
1594 2174 1.548269 GCTACTGCCTCTCTGACTGTT 59.452 52.381 0.00 0.00 0.00 3.16
1595 2175 2.416701 GCTACTGCCTCTCTGACTGTTC 60.417 54.545 0.00 0.00 0.00 3.18
1596 2176 1.709578 ACTGCCTCTCTGACTGTTCA 58.290 50.000 0.00 0.00 0.00 3.18
1597 2177 1.342819 ACTGCCTCTCTGACTGTTCAC 59.657 52.381 0.00 0.00 0.00 3.18
1598 2178 1.342496 CTGCCTCTCTGACTGTTCACA 59.658 52.381 0.00 0.00 0.00 3.58
1599 2179 1.762370 TGCCTCTCTGACTGTTCACAA 59.238 47.619 0.00 0.00 0.00 3.33
1600 2180 2.170397 TGCCTCTCTGACTGTTCACAAA 59.830 45.455 0.00 0.00 0.00 2.83
1601 2181 3.181451 TGCCTCTCTGACTGTTCACAAAT 60.181 43.478 0.00 0.00 0.00 2.32
1602 2182 3.188048 GCCTCTCTGACTGTTCACAAATG 59.812 47.826 0.00 0.00 0.00 2.32
1603 2183 4.384056 CCTCTCTGACTGTTCACAAATGT 58.616 43.478 0.00 0.00 0.00 2.71
1604 2184 5.541845 CCTCTCTGACTGTTCACAAATGTA 58.458 41.667 0.00 0.00 0.00 2.29
1605 2185 5.991606 CCTCTCTGACTGTTCACAAATGTAA 59.008 40.000 0.00 0.00 0.00 2.41
1606 2186 6.146837 CCTCTCTGACTGTTCACAAATGTAAG 59.853 42.308 0.00 0.00 0.00 2.34
1607 2187 6.816136 TCTCTGACTGTTCACAAATGTAAGA 58.184 36.000 0.00 0.00 0.00 2.10
1608 2188 7.272244 TCTCTGACTGTTCACAAATGTAAGAA 58.728 34.615 0.00 0.00 0.00 2.52
1609 2189 7.768582 TCTCTGACTGTTCACAAATGTAAGAAA 59.231 33.333 0.00 0.00 0.00 2.52
1610 2190 8.275015 TCTGACTGTTCACAAATGTAAGAAAA 57.725 30.769 0.00 0.00 0.00 2.29
1611 2191 8.181573 TCTGACTGTTCACAAATGTAAGAAAAC 58.818 33.333 0.00 0.00 0.00 2.43
1612 2192 6.964370 TGACTGTTCACAAATGTAAGAAAACG 59.036 34.615 0.00 0.00 0.00 3.60
1613 2193 6.848451 ACTGTTCACAAATGTAAGAAAACGT 58.152 32.000 0.00 0.00 0.00 3.99
1614 2194 6.964934 ACTGTTCACAAATGTAAGAAAACGTC 59.035 34.615 0.00 0.00 0.00 4.34
1615 2195 7.079182 TGTTCACAAATGTAAGAAAACGTCT 57.921 32.000 0.00 0.00 38.69 4.18
1617 2197 8.666573 TGTTCACAAATGTAAGAAAACGTCTTA 58.333 29.630 0.00 0.00 45.18 2.10
1630 2210 7.630924 AGAAAACGTCTTACATTTCTCAACAG 58.369 34.615 5.11 0.00 37.52 3.16
1631 2211 7.494625 AGAAAACGTCTTACATTTCTCAACAGA 59.505 33.333 5.11 0.00 37.52 3.41
1632 2212 6.771188 AACGTCTTACATTTCTCAACAGAG 57.229 37.500 0.00 0.00 0.00 3.35
1633 2213 5.230942 ACGTCTTACATTTCTCAACAGAGG 58.769 41.667 0.00 0.00 0.00 3.69
1664 2248 2.416162 GCTCTCTACTCCAACCTGTTCG 60.416 54.545 0.00 0.00 0.00 3.95
1666 2250 1.204941 CTCTACTCCAACCTGTTCGGG 59.795 57.143 0.00 0.00 36.97 5.14
1685 2271 5.664457 TCGGGATATTCAGATGATATGTGC 58.336 41.667 0.00 0.00 0.00 4.57
1721 2309 4.203654 AGGCTTTACTACTACCAAGCAC 57.796 45.455 5.21 0.00 42.94 4.40
1723 2311 4.225267 AGGCTTTACTACTACCAAGCACAT 59.775 41.667 5.21 0.00 42.94 3.21
1725 2313 5.414765 GGCTTTACTACTACCAAGCACATTT 59.585 40.000 5.21 0.00 42.94 2.32
1726 2314 6.596497 GGCTTTACTACTACCAAGCACATTTA 59.404 38.462 5.21 0.00 42.94 1.40
1750 2338 1.636003 AGTTTGGAATCTGAGTCCCCC 59.364 52.381 20.32 8.80 33.89 5.40
1753 2341 0.417437 TGGAATCTGAGTCCCCCAGA 59.583 55.000 20.32 0.00 43.84 3.86
1754 2342 0.833949 GGAATCTGAGTCCCCCAGAC 59.166 60.000 12.99 0.00 46.71 3.51
1764 2352 2.532843 GTCCCCCAGACTACAACTACA 58.467 52.381 0.00 0.00 42.69 2.74
1767 2355 3.517901 TCCCCCAGACTACAACTACATTG 59.482 47.826 0.00 0.00 44.60 2.82
1786 2374 5.416639 ACATTGACATTCATTGCTTGCTCTA 59.583 36.000 0.00 0.00 32.63 2.43
1808 2422 7.110155 TCTACAAATCTCAACTTAACATCCCC 58.890 38.462 0.00 0.00 0.00 4.81
1810 2424 3.560636 ATCTCAACTTAACATCCCCCG 57.439 47.619 0.00 0.00 0.00 5.73
1812 2426 0.988832 TCAACTTAACATCCCCCGCT 59.011 50.000 0.00 0.00 0.00 5.52
1829 2449 1.603802 CGCTCCTTTGTTTTCTCTGCA 59.396 47.619 0.00 0.00 0.00 4.41
1832 2452 3.985925 GCTCCTTTGTTTTCTCTGCAATG 59.014 43.478 0.00 0.00 0.00 2.82
1897 2520 3.700577 CCTGTTGGCTTAACGCATG 57.299 52.632 0.00 0.00 42.34 4.06
1921 2545 2.381752 TGACTTCTGAGTGAGTGGGA 57.618 50.000 0.00 0.00 35.88 4.37
1953 2579 0.689080 TCCTCCAGTGCCATCTCTCC 60.689 60.000 0.00 0.00 0.00 3.71
1974 2600 3.477210 ACTTCTCCAAGTGTCACCTTC 57.523 47.619 0.00 0.00 41.64 3.46
2021 2647 0.179018 ACTGTCCAGCCAAACACTCC 60.179 55.000 0.00 0.00 0.00 3.85
2067 2693 1.824852 GGGATTCAAGGAAAATGGCGT 59.175 47.619 0.00 0.00 0.00 5.68
2076 2707 1.127951 GGAAAATGGCGTACACTGTCG 59.872 52.381 0.00 0.00 0.00 4.35
2091 2722 1.112916 TGTCGTCTGACCCAGCTCAA 61.113 55.000 1.55 0.00 44.86 3.02
2173 2807 2.040412 ACCTCACTGAATTTCTCCACCC 59.960 50.000 0.00 0.00 0.00 4.61
2208 2842 2.391389 GCTGAAGAAGGCGTTCGGG 61.391 63.158 13.11 6.45 37.79 5.14
2301 2935 2.722201 GGACTACGTCAGGGGCCTG 61.722 68.421 0.84 0.00 44.86 4.85
2485 3119 0.746659 GGGCTACAATGTGGATTGCC 59.253 55.000 0.00 4.52 42.54 4.52
2549 3249 7.257722 AGGTTTTAGTGTGTTGTTCTGAATTG 58.742 34.615 0.00 0.00 0.00 2.32
2578 3278 3.471680 GAACACCTTCAGAAGTTCAGCT 58.528 45.455 9.41 0.00 39.95 4.24
2580 3280 2.149578 CACCTTCAGAAGTTCAGCTGG 58.850 52.381 15.13 5.41 33.05 4.85
2604 3304 5.296813 ACTCTGTTTTTGCATCGGTTATC 57.703 39.130 0.00 0.00 0.00 1.75
2611 3339 2.498644 TGCATCGGTTATCCAAACCA 57.501 45.000 7.62 0.00 40.28 3.67
2613 3341 3.360867 TGCATCGGTTATCCAAACCAAT 58.639 40.909 7.62 0.00 40.28 3.16
2631 3359 8.355169 CAAACCAATCAGATTTGTATAGATGGG 58.645 37.037 0.36 0.00 36.16 4.00
2632 3360 6.546484 ACCAATCAGATTTGTATAGATGGGG 58.454 40.000 0.00 0.00 34.69 4.96
2686 3442 2.933495 TCGACCAGAGTTTATCGTGG 57.067 50.000 0.00 0.00 36.03 4.94
2811 3659 8.421249 TCCTGACAATCTTGGTCAATTTTAAT 57.579 30.769 0.00 0.00 44.04 1.40
2937 3837 1.898094 GCACATCACAGGGCACACA 60.898 57.895 0.00 0.00 0.00 3.72
2938 3838 1.454572 GCACATCACAGGGCACACAA 61.455 55.000 0.00 0.00 0.00 3.33
2939 3839 1.031235 CACATCACAGGGCACACAAA 58.969 50.000 0.00 0.00 0.00 2.83
3000 3910 0.908910 ATGGGTGCTACGACAATCCA 59.091 50.000 0.00 0.00 32.13 3.41
3005 3915 2.418746 GGTGCTACGACAATCCACTCAT 60.419 50.000 0.00 0.00 0.00 2.90
3008 3918 3.195610 TGCTACGACAATCCACTCATTCT 59.804 43.478 0.00 0.00 0.00 2.40
3023 3933 4.398358 ACTCATTCTGTGCCATGATTCTTG 59.602 41.667 0.00 0.00 0.00 3.02
3060 3970 0.176680 ACAGCTAGAATCAGGCACGG 59.823 55.000 0.00 0.00 0.00 4.94
3116 4026 3.605749 AACATGCTCGACACCGGGG 62.606 63.158 0.00 0.00 36.61 5.73
3181 4091 5.301551 TGGCACTCTCTTATTGAAAGCAAAA 59.698 36.000 0.00 0.00 37.59 2.44
3182 4092 6.183360 TGGCACTCTCTTATTGAAAGCAAAAA 60.183 34.615 0.00 0.00 37.59 1.94
3210 4120 3.963383 AGTTAAGAAACCAACAGCACG 57.037 42.857 0.00 0.00 36.15 5.34
3223 4134 1.331756 ACAGCACGCTCAACTCAAAAG 59.668 47.619 0.00 0.00 0.00 2.27
3231 4142 5.049405 CACGCTCAACTCAAAAGTAGGAAAT 60.049 40.000 0.00 0.00 33.48 2.17
3234 4145 6.128172 CGCTCAACTCAAAAGTAGGAAATGAT 60.128 38.462 0.00 0.00 33.48 2.45
3266 4184 1.131638 TCAGCACAACAGGAAGAGGT 58.868 50.000 0.00 0.00 0.00 3.85
3276 4194 1.830477 CAGGAAGAGGTGGAGGAGAAG 59.170 57.143 0.00 0.00 0.00 2.85
3277 4195 1.199615 GGAAGAGGTGGAGGAGAAGG 58.800 60.000 0.00 0.00 0.00 3.46
3287 4205 1.467920 GAGGAGAAGGCACCAATTGG 58.532 55.000 23.31 23.31 42.17 3.16
3349 4297 4.322567 AGCACCTGTGATTTCTTCTTCTC 58.677 43.478 0.51 0.00 0.00 2.87
3387 4335 1.191489 TGTGGATCTTGTCGCCCAGA 61.191 55.000 0.00 0.00 0.00 3.86
3405 4353 4.657039 CCCAGAATTTCCATTCCCATCAAT 59.343 41.667 0.00 0.00 39.95 2.57
3529 4477 0.955428 CCACACACCTTGGATCACCG 60.955 60.000 0.00 0.00 39.42 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.468914 GAACGCTCCTTTGGGAATCAC 59.531 52.381 0.00 0.00 41.69 3.06
8 9 1.351017 AGAACGCTCCTTTGGGAATCA 59.649 47.619 0.00 0.00 41.69 2.57
9 10 2.010497 GAGAACGCTCCTTTGGGAATC 58.990 52.381 0.00 0.00 41.69 2.52
10 11 1.676014 CGAGAACGCTCCTTTGGGAAT 60.676 52.381 0.00 0.00 41.69 3.01
15 16 1.923204 CAGATCGAGAACGCTCCTTTG 59.077 52.381 0.00 0.00 37.91 2.77
16 17 1.737363 GCAGATCGAGAACGCTCCTTT 60.737 52.381 0.00 0.00 37.91 3.11
25 26 6.282930 TGTTGATCATTATGCAGATCGAGAA 58.717 36.000 0.00 0.00 42.72 2.87
81 82 0.889994 TCATGCCCAGTCAATGTTGC 59.110 50.000 0.00 0.00 0.00 4.17
82 83 2.559668 AGTTCATGCCCAGTCAATGTTG 59.440 45.455 0.00 0.00 0.00 3.33
84 85 2.592102 AGTTCATGCCCAGTCAATGT 57.408 45.000 0.00 0.00 0.00 2.71
86 87 3.614092 CACTAGTTCATGCCCAGTCAAT 58.386 45.455 0.00 0.00 0.00 2.57
96 97 7.741027 AATTATGCAGATCCACTAGTTCATG 57.259 36.000 0.00 0.00 0.00 3.07
98 99 8.650490 TCATAATTATGCAGATCCACTAGTTCA 58.350 33.333 18.89 0.00 33.76 3.18
103 104 8.210265 TGTGTTCATAATTATGCAGATCCACTA 58.790 33.333 18.89 3.73 33.76 2.74
111 112 7.516155 GCTTGCAATGTGTTCATAATTATGCAG 60.516 37.037 18.89 8.16 41.01 4.41
130 131 1.647545 GCTGATGCTACCGCTTGCAA 61.648 55.000 0.00 0.00 42.74 4.08
132 133 2.044832 CTGCTGATGCTACCGCTTGC 62.045 60.000 0.00 0.00 40.48 4.01
137 138 0.108186 TTGGTCTGCTGATGCTACCG 60.108 55.000 0.00 0.00 43.83 4.02
158 159 4.279671 CCAAACTGTTAGGGTTATGTTGCA 59.720 41.667 0.00 0.00 0.00 4.08
159 160 4.521256 TCCAAACTGTTAGGGTTATGTTGC 59.479 41.667 9.98 0.00 0.00 4.17
160 161 5.183140 CCTCCAAACTGTTAGGGTTATGTTG 59.817 44.000 9.98 0.00 0.00 3.33
161 162 5.321927 CCTCCAAACTGTTAGGGTTATGTT 58.678 41.667 9.98 0.00 0.00 2.71
162 163 4.809691 GCCTCCAAACTGTTAGGGTTATGT 60.810 45.833 9.30 0.00 0.00 2.29
163 164 3.694566 GCCTCCAAACTGTTAGGGTTATG 59.305 47.826 9.30 0.00 0.00 1.90
165 166 2.040679 GGCCTCCAAACTGTTAGGGTTA 59.959 50.000 9.30 0.00 0.00 2.85
167 168 0.404426 GGCCTCCAAACTGTTAGGGT 59.596 55.000 9.30 0.00 0.00 4.34
168 169 0.698818 AGGCCTCCAAACTGTTAGGG 59.301 55.000 0.00 7.25 0.00 3.53
171 172 2.290071 GCTACAGGCCTCCAAACTGTTA 60.290 50.000 0.00 0.00 42.38 2.41
172 173 1.545651 GCTACAGGCCTCCAAACTGTT 60.546 52.381 0.00 0.00 42.38 3.16
173 174 0.036875 GCTACAGGCCTCCAAACTGT 59.963 55.000 0.00 0.00 46.30 3.55
174 175 2.859992 GCTACAGGCCTCCAAACTG 58.140 57.895 0.00 0.00 38.19 3.16
187 208 1.542915 GTGGACGACAACTAGGCTACA 59.457 52.381 0.00 0.00 0.00 2.74
210 231 0.253894 TCCTGACCATCATGTGCTGG 59.746 55.000 1.52 1.52 37.35 4.85
215 236 1.142465 GCCTGATCCTGACCATCATGT 59.858 52.381 0.00 0.00 29.78 3.21
217 238 0.395686 CGCCTGATCCTGACCATCAT 59.604 55.000 0.00 0.00 29.78 2.45
219 240 0.249657 GACGCCTGATCCTGACCATC 60.250 60.000 0.00 0.00 0.00 3.51
220 241 0.977627 TGACGCCTGATCCTGACCAT 60.978 55.000 0.00 0.00 0.00 3.55
224 245 3.298958 GGTGACGCCTGATCCTGA 58.701 61.111 0.00 0.00 0.00 3.86
237 258 0.034756 CCAACCTGTCATCACGGTGA 59.965 55.000 14.01 14.01 0.00 4.02
243 264 0.697658 TCATGCCCAACCTGTCATCA 59.302 50.000 0.00 0.00 0.00 3.07
246 267 1.133181 TCCTCATGCCCAACCTGTCA 61.133 55.000 0.00 0.00 0.00 3.58
250 271 2.988839 GCCTCCTCATGCCCAACCT 61.989 63.158 0.00 0.00 0.00 3.50
252 273 2.440980 GGCCTCCTCATGCCCAAC 60.441 66.667 0.00 0.00 41.97 3.77
263 284 0.251341 AAACATGTGGTCAGGCCTCC 60.251 55.000 0.00 1.85 38.35 4.30
272 293 2.664402 AGCCTCAAGAAACATGTGGT 57.336 45.000 0.00 0.00 34.65 4.16
274 295 3.553508 CCCAAAGCCTCAAGAAACATGTG 60.554 47.826 0.00 0.00 0.00 3.21
275 296 2.629617 CCCAAAGCCTCAAGAAACATGT 59.370 45.455 0.00 0.00 0.00 3.21
276 297 2.892852 TCCCAAAGCCTCAAGAAACATG 59.107 45.455 0.00 0.00 0.00 3.21
277 298 3.243359 TCCCAAAGCCTCAAGAAACAT 57.757 42.857 0.00 0.00 0.00 2.71
278 299 2.746279 TCCCAAAGCCTCAAGAAACA 57.254 45.000 0.00 0.00 0.00 2.83
279 300 3.132111 TGTTTCCCAAAGCCTCAAGAAAC 59.868 43.478 10.63 10.63 42.02 2.78
280 301 3.370104 TGTTTCCCAAAGCCTCAAGAAA 58.630 40.909 0.00 0.00 0.00 2.52
282 303 2.693074 GTTGTTTCCCAAAGCCTCAAGA 59.307 45.455 0.00 0.00 34.07 3.02
286 307 1.269051 CGTGTTGTTTCCCAAAGCCTC 60.269 52.381 0.00 0.00 34.07 4.70
287 308 0.744281 CGTGTTGTTTCCCAAAGCCT 59.256 50.000 0.00 0.00 34.07 4.58
288 309 0.741915 TCGTGTTGTTTCCCAAAGCC 59.258 50.000 0.00 0.00 34.07 4.35
289 310 1.133407 TGTCGTGTTGTTTCCCAAAGC 59.867 47.619 0.00 0.00 34.07 3.51
295 758 2.400399 TCGAGATGTCGTGTTGTTTCC 58.600 47.619 12.41 0.00 46.85 3.13
304 767 2.762234 GGCGGTCTCGAGATGTCGT 61.762 63.158 19.90 0.00 46.85 4.34
309 772 1.527380 GAGGAGGCGGTCTCGAGAT 60.527 63.158 19.90 0.91 43.34 2.75
310 773 2.124653 GAGGAGGCGGTCTCGAGA 60.125 66.667 12.08 12.08 43.34 4.04
320 783 4.057428 AGTCACACGCGAGGAGGC 62.057 66.667 15.93 3.53 0.00 4.70
321 784 2.126307 CAGTCACACGCGAGGAGG 60.126 66.667 15.93 0.00 0.00 4.30
322 785 2.807045 GCAGTCACACGCGAGGAG 60.807 66.667 15.93 1.86 0.00 3.69
323 786 4.357947 GGCAGTCACACGCGAGGA 62.358 66.667 15.93 3.70 0.00 3.71
326 789 4.578898 AACGGCAGTCACACGCGA 62.579 61.111 15.93 0.00 0.00 5.87
327 790 4.354212 CAACGGCAGTCACACGCG 62.354 66.667 3.53 3.53 0.00 6.01
328 791 4.666532 GCAACGGCAGTCACACGC 62.667 66.667 0.00 0.00 40.72 5.34
329 792 4.012895 GGCAACGGCAGTCACACG 62.013 66.667 0.00 0.00 43.71 4.49
330 793 3.660111 GGGCAACGGCAGTCACAC 61.660 66.667 0.00 0.00 43.71 3.82
331 794 4.182433 TGGGCAACGGCAGTCACA 62.182 61.111 0.00 0.00 43.71 3.58
332 795 3.660111 GTGGGCAACGGCAGTCAC 61.660 66.667 0.00 0.00 43.71 3.67
333 796 3.490031 ATGTGGGCAACGGCAGTCA 62.490 57.895 0.00 0.00 43.71 3.41
343 806 1.153524 AACTCAAGGCATGTGGGCA 59.846 52.632 0.00 0.00 46.44 5.36
356 819 0.390340 GGTCTGAGCGATGCAACTCA 60.390 55.000 14.48 14.48 40.54 3.41
371 834 3.308401 ACATTTTTCCAAAGCCAGGTCT 58.692 40.909 0.00 0.00 0.00 3.85
372 835 3.554960 GGACATTTTTCCAAAGCCAGGTC 60.555 47.826 0.00 0.00 35.49 3.85
373 836 2.368548 GGACATTTTTCCAAAGCCAGGT 59.631 45.455 0.00 0.00 35.49 4.00
374 837 2.610232 CGGACATTTTTCCAAAGCCAGG 60.610 50.000 0.00 0.00 35.04 4.45
375 838 2.295909 TCGGACATTTTTCCAAAGCCAG 59.704 45.455 0.00 0.00 35.04 4.85
376 839 2.311463 TCGGACATTTTTCCAAAGCCA 58.689 42.857 0.00 0.00 35.04 4.75
377 840 3.592898 ATCGGACATTTTTCCAAAGCC 57.407 42.857 0.00 0.00 35.04 4.35
378 841 4.385748 GTGAATCGGACATTTTTCCAAAGC 59.614 41.667 0.00 0.00 35.04 3.51
379 842 4.923281 GGTGAATCGGACATTTTTCCAAAG 59.077 41.667 0.00 0.00 35.04 2.77
380 843 4.262249 GGGTGAATCGGACATTTTTCCAAA 60.262 41.667 0.00 0.00 35.04 3.28
381 844 3.257127 GGGTGAATCGGACATTTTTCCAA 59.743 43.478 0.00 0.00 35.04 3.53
382 845 2.823154 GGGTGAATCGGACATTTTTCCA 59.177 45.455 0.00 0.00 35.04 3.53
383 846 2.159435 CGGGTGAATCGGACATTTTTCC 60.159 50.000 0.00 0.00 0.00 3.13
384 847 2.486592 ACGGGTGAATCGGACATTTTTC 59.513 45.455 0.00 0.00 0.00 2.29
385 848 2.510613 ACGGGTGAATCGGACATTTTT 58.489 42.857 0.00 0.00 0.00 1.94
386 849 2.194201 ACGGGTGAATCGGACATTTT 57.806 45.000 0.00 0.00 0.00 1.82
387 850 2.081462 GAACGGGTGAATCGGACATTT 58.919 47.619 0.00 0.00 0.00 2.32
388 851 1.677820 GGAACGGGTGAATCGGACATT 60.678 52.381 0.00 0.00 0.00 2.71
389 852 0.107848 GGAACGGGTGAATCGGACAT 60.108 55.000 0.00 0.00 0.00 3.06
390 853 1.294138 GGAACGGGTGAATCGGACA 59.706 57.895 0.00 0.00 0.00 4.02
391 854 1.449070 GGGAACGGGTGAATCGGAC 60.449 63.158 0.00 0.00 0.00 4.79
392 855 1.914263 TGGGAACGGGTGAATCGGA 60.914 57.895 0.00 0.00 0.00 4.55
393 856 1.743995 GTGGGAACGGGTGAATCGG 60.744 63.158 0.00 0.00 0.00 4.18
394 857 1.743995 GGTGGGAACGGGTGAATCG 60.744 63.158 0.00 0.00 0.00 3.34
395 858 0.392595 GAGGTGGGAACGGGTGAATC 60.393 60.000 0.00 0.00 0.00 2.52
396 859 1.683441 GAGGTGGGAACGGGTGAAT 59.317 57.895 0.00 0.00 0.00 2.57
397 860 2.522367 GGAGGTGGGAACGGGTGAA 61.522 63.158 0.00 0.00 0.00 3.18
398 861 2.926242 GGAGGTGGGAACGGGTGA 60.926 66.667 0.00 0.00 0.00 4.02
399 862 2.928396 AGGAGGTGGGAACGGGTG 60.928 66.667 0.00 0.00 0.00 4.61
400 863 2.606826 GAGGAGGTGGGAACGGGT 60.607 66.667 0.00 0.00 0.00 5.28
401 864 3.771160 CGAGGAGGTGGGAACGGG 61.771 72.222 0.00 0.00 0.00 5.28
402 865 4.452733 GCGAGGAGGTGGGAACGG 62.453 72.222 0.00 0.00 0.00 4.44
403 866 4.796231 CGCGAGGAGGTGGGAACG 62.796 72.222 0.00 0.00 0.00 3.95
404 867 3.692406 ACGCGAGGAGGTGGGAAC 61.692 66.667 15.93 0.00 0.00 3.62
405 868 3.691342 CACGCGAGGAGGTGGGAA 61.691 66.667 15.93 0.00 0.00 3.97
406 869 4.988716 ACACGCGAGGAGGTGGGA 62.989 66.667 15.93 0.00 38.46 4.37
407 870 4.742201 CACACGCGAGGAGGTGGG 62.742 72.222 15.93 0.00 38.46 4.61
408 871 3.680786 TCACACGCGAGGAGGTGG 61.681 66.667 15.93 0.00 38.46 4.61
409 872 2.430921 GTCACACGCGAGGAGGTG 60.431 66.667 15.93 12.79 39.98 4.00
410 873 3.681835 GGTCACACGCGAGGAGGT 61.682 66.667 15.93 0.00 0.00 3.85
411 874 4.778415 CGGTCACACGCGAGGAGG 62.778 72.222 15.93 0.00 0.00 4.30
430 893 3.390183 TAGAGGCATGTGGGCAGCG 62.390 63.158 0.00 0.00 46.44 5.18
431 894 1.525535 CTAGAGGCATGTGGGCAGC 60.526 63.158 0.00 0.00 46.44 5.25
432 895 0.254178 AACTAGAGGCATGTGGGCAG 59.746 55.000 0.00 0.00 46.44 4.85
433 896 0.035152 CAACTAGAGGCATGTGGGCA 60.035 55.000 0.00 0.00 46.44 5.36
434 897 1.379642 GCAACTAGAGGCATGTGGGC 61.380 60.000 0.00 0.00 43.80 5.36
435 898 0.035152 TGCAACTAGAGGCATGTGGG 60.035 55.000 8.62 0.00 34.58 4.61
436 899 3.556817 TGCAACTAGAGGCATGTGG 57.443 52.632 8.62 0.00 34.58 4.17
441 904 0.250234 AAGCGATGCAACTAGAGGCA 59.750 50.000 13.78 13.78 45.23 4.75
442 905 0.654683 CAAGCGATGCAACTAGAGGC 59.345 55.000 0.00 0.00 0.00 4.70
443 906 1.134699 TCCAAGCGATGCAACTAGAGG 60.135 52.381 0.00 0.00 0.00 3.69
444 907 1.929836 GTCCAAGCGATGCAACTAGAG 59.070 52.381 0.00 0.00 0.00 2.43
445 908 1.405526 GGTCCAAGCGATGCAACTAGA 60.406 52.381 0.00 0.00 0.00 2.43
446 909 1.009829 GGTCCAAGCGATGCAACTAG 58.990 55.000 0.00 0.00 0.00 2.57
447 910 0.613260 AGGTCCAAGCGATGCAACTA 59.387 50.000 0.00 0.00 0.00 2.24
448 911 0.957395 CAGGTCCAAGCGATGCAACT 60.957 55.000 0.00 0.00 0.00 3.16
449 912 1.503542 CAGGTCCAAGCGATGCAAC 59.496 57.895 0.00 0.00 0.00 4.17
450 913 1.675310 CCAGGTCCAAGCGATGCAA 60.675 57.895 0.00 0.00 0.00 4.08
451 914 2.046023 CCAGGTCCAAGCGATGCA 60.046 61.111 0.00 0.00 0.00 3.96
452 915 3.512516 GCCAGGTCCAAGCGATGC 61.513 66.667 0.00 0.00 0.00 3.91
453 916 0.962356 AAAGCCAGGTCCAAGCGATG 60.962 55.000 0.00 0.00 0.00 3.84
454 917 0.962356 CAAAGCCAGGTCCAAGCGAT 60.962 55.000 0.00 0.00 0.00 4.58
455 918 1.600636 CAAAGCCAGGTCCAAGCGA 60.601 57.895 0.00 0.00 0.00 4.93
456 919 2.629656 CCAAAGCCAGGTCCAAGCG 61.630 63.158 0.00 0.00 0.00 4.68
457 920 0.827507 TTCCAAAGCCAGGTCCAAGC 60.828 55.000 0.00 0.00 0.00 4.01
458 921 1.703411 TTTCCAAAGCCAGGTCCAAG 58.297 50.000 0.00 0.00 0.00 3.61
459 922 2.166907 TTTTCCAAAGCCAGGTCCAA 57.833 45.000 0.00 0.00 0.00 3.53
460 923 2.166907 TTTTTCCAAAGCCAGGTCCA 57.833 45.000 0.00 0.00 0.00 4.02
463 926 1.072173 GCCATTTTTCCAAAGCCAGGT 59.928 47.619 0.00 0.00 0.00 4.00
480 943 2.046700 GAACGGGTGAATCGGCCA 60.047 61.111 2.24 0.00 0.00 5.36
485 948 1.743995 CGGTGGGAACGGGTGAATC 60.744 63.158 0.00 0.00 0.00 2.52
486 949 2.180159 CTCGGTGGGAACGGGTGAAT 62.180 60.000 0.00 0.00 0.00 2.57
487 950 2.843411 TCGGTGGGAACGGGTGAA 60.843 61.111 0.00 0.00 0.00 3.18
500 963 4.351054 CTTTGGGCCTGGCTCGGT 62.351 66.667 19.68 0.00 0.00 4.69
502 965 4.351054 ACCTTTGGGCCTGGCTCG 62.351 66.667 19.68 3.92 35.63 5.03
515 978 1.951602 GCACGAACCTTAAACCACCTT 59.048 47.619 0.00 0.00 0.00 3.50
521 984 0.946528 AACCCGCACGAACCTTAAAC 59.053 50.000 0.00 0.00 0.00 2.01
522 985 2.224257 ACTAACCCGCACGAACCTTAAA 60.224 45.455 0.00 0.00 0.00 1.52
525 988 0.968405 TACTAACCCGCACGAACCTT 59.032 50.000 0.00 0.00 0.00 3.50
528 991 3.432933 TCAAAATACTAACCCGCACGAAC 59.567 43.478 0.00 0.00 0.00 3.95
529 992 3.661944 TCAAAATACTAACCCGCACGAA 58.338 40.909 0.00 0.00 0.00 3.85
530 993 3.316071 TCAAAATACTAACCCGCACGA 57.684 42.857 0.00 0.00 0.00 4.35
531 994 3.372822 ACATCAAAATACTAACCCGCACG 59.627 43.478 0.00 0.00 0.00 5.34
532 995 4.393680 TCACATCAAAATACTAACCCGCAC 59.606 41.667 0.00 0.00 0.00 5.34
533 996 4.393680 GTCACATCAAAATACTAACCCGCA 59.606 41.667 0.00 0.00 0.00 5.69
534 997 4.201881 GGTCACATCAAAATACTAACCCGC 60.202 45.833 0.00 0.00 0.00 6.13
535 998 5.183228 AGGTCACATCAAAATACTAACCCG 58.817 41.667 0.00 0.00 0.00 5.28
536 999 6.260271 GCTAGGTCACATCAAAATACTAACCC 59.740 42.308 0.00 0.00 0.00 4.11
537 1000 6.260271 GGCTAGGTCACATCAAAATACTAACC 59.740 42.308 0.00 0.00 0.00 2.85
538 1001 6.821665 TGGCTAGGTCACATCAAAATACTAAC 59.178 38.462 0.00 0.00 0.00 2.34
539 1002 6.953101 TGGCTAGGTCACATCAAAATACTAA 58.047 36.000 0.00 0.00 0.00 2.24
540 1003 6.553953 TGGCTAGGTCACATCAAAATACTA 57.446 37.500 0.00 0.00 0.00 1.82
541 1004 5.435686 TGGCTAGGTCACATCAAAATACT 57.564 39.130 0.00 0.00 0.00 2.12
542 1005 6.318648 TCATTGGCTAGGTCACATCAAAATAC 59.681 38.462 0.00 0.00 0.00 1.89
553 1016 2.375174 ACCTGTTTCATTGGCTAGGTCA 59.625 45.455 0.00 0.00 33.48 4.02
555 1018 3.525800 AACCTGTTTCATTGGCTAGGT 57.474 42.857 0.00 0.00 40.07 3.08
556 1019 5.975693 TTTAACCTGTTTCATTGGCTAGG 57.024 39.130 0.00 0.00 0.00 3.02
557 1020 7.830739 AGAATTTAACCTGTTTCATTGGCTAG 58.169 34.615 0.00 0.00 0.00 3.42
560 1023 7.307930 CCAAAGAATTTAACCTGTTTCATTGGC 60.308 37.037 5.81 0.00 38.98 4.52
561 1024 7.714813 ACCAAAGAATTTAACCTGTTTCATTGG 59.285 33.333 13.79 13.79 45.50 3.16
566 1029 6.923508 CCTGACCAAAGAATTTAACCTGTTTC 59.076 38.462 0.00 0.00 35.03 2.78
570 1033 6.215845 CAACCTGACCAAAGAATTTAACCTG 58.784 40.000 0.00 0.00 35.03 4.00
575 1038 5.068215 TCCCAACCTGACCAAAGAATTTA 57.932 39.130 0.00 0.00 35.03 1.40
583 1046 1.005805 CATCCATCCCAACCTGACCAA 59.994 52.381 0.00 0.00 0.00 3.67
584 1047 0.625316 CATCCATCCCAACCTGACCA 59.375 55.000 0.00 0.00 0.00 4.02
585 1048 0.753111 GCATCCATCCCAACCTGACC 60.753 60.000 0.00 0.00 0.00 4.02
586 1049 1.097547 CGCATCCATCCCAACCTGAC 61.098 60.000 0.00 0.00 0.00 3.51
587 1050 1.224315 CGCATCCATCCCAACCTGA 59.776 57.895 0.00 0.00 0.00 3.86
590 1053 1.823899 GTCCGCATCCATCCCAACC 60.824 63.158 0.00 0.00 0.00 3.77
592 1055 0.679640 GTTGTCCGCATCCATCCCAA 60.680 55.000 0.00 0.00 0.00 4.12
593 1056 1.077787 GTTGTCCGCATCCATCCCA 60.078 57.895 0.00 0.00 0.00 4.37
594 1057 1.823899 GGTTGTCCGCATCCATCCC 60.824 63.158 0.00 0.00 35.18 3.85
597 1066 0.887933 GTTTGGTTGTCCGCATCCAT 59.112 50.000 0.00 0.00 42.24 3.41
607 1076 2.815298 CGTGGACGCGTTTGGTTGT 61.815 57.895 15.53 0.00 0.00 3.32
612 1081 1.286354 ATACACCGTGGACGCGTTTG 61.286 55.000 15.53 6.78 38.18 2.93
614 1083 0.600782 AAATACACCGTGGACGCGTT 60.601 50.000 15.53 0.00 38.18 4.84
615 1084 1.005867 AAATACACCGTGGACGCGT 60.006 52.632 13.85 13.85 38.18 6.01
616 1085 1.689352 GGAAATACACCGTGGACGCG 61.689 60.000 3.53 3.53 38.18 6.01
617 1086 0.671163 TGGAAATACACCGTGGACGC 60.671 55.000 3.03 0.00 38.18 5.19
618 1087 1.337447 ACTGGAAATACACCGTGGACG 60.337 52.381 3.03 0.00 39.44 4.79
619 1088 2.467566 ACTGGAAATACACCGTGGAC 57.532 50.000 3.03 0.00 0.00 4.02
620 1089 2.369203 TGAACTGGAAATACACCGTGGA 59.631 45.455 3.03 0.00 0.00 4.02
621 1090 2.773487 TGAACTGGAAATACACCGTGG 58.227 47.619 3.03 0.00 0.00 4.94
622 1091 4.000325 TGATGAACTGGAAATACACCGTG 59.000 43.478 0.00 0.00 0.00 4.94
623 1092 4.000988 GTGATGAACTGGAAATACACCGT 58.999 43.478 0.00 0.00 0.00 4.83
624 1093 3.062099 CGTGATGAACTGGAAATACACCG 59.938 47.826 0.00 0.00 0.00 4.94
625 1094 3.374058 CCGTGATGAACTGGAAATACACC 59.626 47.826 0.00 0.00 0.00 4.16
626 1095 3.181510 GCCGTGATGAACTGGAAATACAC 60.182 47.826 0.00 0.00 0.00 2.90
627 1096 3.006940 GCCGTGATGAACTGGAAATACA 58.993 45.455 0.00 0.00 0.00 2.29
628 1097 2.030457 CGCCGTGATGAACTGGAAATAC 59.970 50.000 0.00 0.00 0.00 1.89
629 1098 2.276201 CGCCGTGATGAACTGGAAATA 58.724 47.619 0.00 0.00 0.00 1.40
630 1099 1.086696 CGCCGTGATGAACTGGAAAT 58.913 50.000 0.00 0.00 0.00 2.17
631 1100 1.573829 GCGCCGTGATGAACTGGAAA 61.574 55.000 0.00 0.00 0.00 3.13
632 1101 2.032634 GCGCCGTGATGAACTGGAA 61.033 57.895 0.00 0.00 0.00 3.53
639 1108 2.202610 CTTCTCGCGCCGTGATGA 60.203 61.111 0.00 0.00 30.13 2.92
640 1109 3.257561 CCTTCTCGCGCCGTGATG 61.258 66.667 0.00 6.09 0.00 3.07
643 1112 2.227968 CTTTTCCTTCTCGCGCCGTG 62.228 60.000 0.00 0.00 0.00 4.94
649 1118 0.799393 GGTGCTCTTTTCCTTCTCGC 59.201 55.000 0.00 0.00 0.00 5.03
650 1119 2.072298 CAGGTGCTCTTTTCCTTCTCG 58.928 52.381 0.00 0.00 0.00 4.04
663 1132 1.133976 GTTGGATATCCTGCAGGTGCT 60.134 52.381 31.58 19.35 42.66 4.40
673 1142 5.887035 ACTATAGTAGCCTCGTTGGATATCC 59.113 44.000 15.39 15.39 39.12 2.59
674 1143 6.374894 ACACTATAGTAGCCTCGTTGGATATC 59.625 42.308 4.74 0.00 39.12 1.63
675 1144 6.151312 CACACTATAGTAGCCTCGTTGGATAT 59.849 42.308 4.74 0.00 39.12 1.63
680 1149 3.380637 ACCACACTATAGTAGCCTCGTTG 59.619 47.826 4.74 0.00 0.00 4.10
688 1157 4.381612 CCACCACACACCACACTATAGTAG 60.382 50.000 4.74 3.11 0.00 2.57
694 1163 0.983905 ACCCACCACACACCACACTA 60.984 55.000 0.00 0.00 0.00 2.74
695 1164 2.305607 ACCCACCACACACCACACT 61.306 57.895 0.00 0.00 0.00 3.55
696 1165 2.118404 CACCCACCACACACCACAC 61.118 63.158 0.00 0.00 0.00 3.82
697 1166 1.640593 ATCACCCACCACACACCACA 61.641 55.000 0.00 0.00 0.00 4.17
698 1167 1.150536 ATCACCCACCACACACCAC 59.849 57.895 0.00 0.00 0.00 4.16
699 1168 1.150308 CATCACCCACCACACACCA 59.850 57.895 0.00 0.00 0.00 4.17
700 1169 2.268076 GCATCACCCACCACACACC 61.268 63.158 0.00 0.00 0.00 4.16
701 1170 2.616330 CGCATCACCCACCACACAC 61.616 63.158 0.00 0.00 0.00 3.82
702 1171 2.281414 CGCATCACCCACCACACA 60.281 61.111 0.00 0.00 0.00 3.72
725 1194 2.479656 CTCTCTTTTGACTGACAGCAGC 59.520 50.000 1.25 0.00 46.26 5.25
767 1249 0.041312 CCACCGCAAACGAAACAGAG 60.041 55.000 0.00 0.00 43.93 3.35
768 1250 2.018544 CCACCGCAAACGAAACAGA 58.981 52.632 0.00 0.00 43.93 3.41
769 1251 1.657181 GCCACCGCAAACGAAACAG 60.657 57.895 0.00 0.00 43.93 3.16
804 1295 2.753029 GCTCCAGTCCAGCCACTT 59.247 61.111 0.00 0.00 0.00 3.16
809 1300 3.005539 TCCAGGCTCCAGTCCAGC 61.006 66.667 0.00 0.00 36.02 4.85
810 1301 2.365586 CCTCCAGGCTCCAGTCCAG 61.366 68.421 0.00 0.00 0.00 3.86
811 1302 2.284921 CCTCCAGGCTCCAGTCCA 60.285 66.667 0.00 0.00 0.00 4.02
858 1353 3.992641 TCTCGGCAGAGGTGGGGA 61.993 66.667 14.13 0.00 44.47 4.81
859 1354 3.775654 GTCTCGGCAGAGGTGGGG 61.776 72.222 14.13 0.00 44.47 4.96
905 1427 1.800805 ATTCTCTTGTCTGTGGCGTG 58.199 50.000 0.00 0.00 0.00 5.34
906 1428 2.826128 TCTATTCTCTTGTCTGTGGCGT 59.174 45.455 0.00 0.00 0.00 5.68
907 1429 3.510388 TCTATTCTCTTGTCTGTGGCG 57.490 47.619 0.00 0.00 0.00 5.69
908 1430 3.620821 GCTTCTATTCTCTTGTCTGTGGC 59.379 47.826 0.00 0.00 0.00 5.01
910 1432 5.718146 TCTGCTTCTATTCTCTTGTCTGTG 58.282 41.667 0.00 0.00 0.00 3.66
911 1433 5.105392 CCTCTGCTTCTATTCTCTTGTCTGT 60.105 44.000 0.00 0.00 0.00 3.41
912 1434 5.105392 ACCTCTGCTTCTATTCTCTTGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
924 1450 0.116342 TCCCCACACCTCTGCTTCTA 59.884 55.000 0.00 0.00 0.00 2.10
956 1483 3.130160 CTTCTTCCCTGCGGCTGC 61.130 66.667 11.65 11.65 43.20 5.25
957 1484 1.449246 CTCTTCTTCCCTGCGGCTG 60.449 63.158 0.00 0.00 0.00 4.85
958 1485 1.194781 TTCTCTTCTTCCCTGCGGCT 61.195 55.000 0.00 0.00 0.00 5.52
959 1486 0.321653 TTTCTCTTCTTCCCTGCGGC 60.322 55.000 0.00 0.00 0.00 6.53
962 1489 1.271597 TGGCTTTCTCTTCTTCCCTGC 60.272 52.381 0.00 0.00 0.00 4.85
1012 1550 1.765255 GGGGGAGGGGTAGCAGTAC 60.765 68.421 0.00 0.00 0.00 2.73
1013 1551 1.533808 AAGGGGGAGGGGTAGCAGTA 61.534 60.000 0.00 0.00 0.00 2.74
1014 1552 2.841972 GAAGGGGGAGGGGTAGCAGT 62.842 65.000 0.00 0.00 0.00 4.40
1015 1553 2.042930 AAGGGGGAGGGGTAGCAG 59.957 66.667 0.00 0.00 0.00 4.24
1016 1554 2.042261 GAAGGGGGAGGGGTAGCA 59.958 66.667 0.00 0.00 0.00 3.49
1017 1555 2.773053 GGAAGGGGGAGGGGTAGC 60.773 72.222 0.00 0.00 0.00 3.58
1018 1556 1.074395 GAGGAAGGGGGAGGGGTAG 60.074 68.421 0.00 0.00 0.00 3.18
1019 1557 2.654204 GGAGGAAGGGGGAGGGGTA 61.654 68.421 0.00 0.00 0.00 3.69
1020 1558 4.040198 GGAGGAAGGGGGAGGGGT 62.040 72.222 0.00 0.00 0.00 4.95
1021 1559 4.845307 GGGAGGAAGGGGGAGGGG 62.845 77.778 0.00 0.00 0.00 4.79
1022 1560 3.711782 AGGGAGGAAGGGGGAGGG 61.712 72.222 0.00 0.00 0.00 4.30
1023 1561 2.367512 CAGGGAGGAAGGGGGAGG 60.368 72.222 0.00 0.00 0.00 4.30
1081 1628 2.846918 GATTCGATAGCCACGCGC 59.153 61.111 5.73 0.00 37.98 6.86
1082 1629 2.988549 GCGATTCGATAGCCACGCG 61.989 63.158 10.88 3.53 39.36 6.01
1083 1630 1.487452 TTGCGATTCGATAGCCACGC 61.487 55.000 10.88 0.00 44.89 5.34
1086 1633 1.000717 TCGATTGCGATTCGATAGCCA 60.001 47.619 10.88 0.00 42.51 4.75
1104 1651 1.594293 CGGGATGAATCGGGGTTCG 60.594 63.158 0.00 0.00 40.90 3.95
1105 1652 1.227853 CCGGGATGAATCGGGGTTC 60.228 63.158 0.00 0.00 42.32 3.62
1106 1653 2.915869 CCGGGATGAATCGGGGTT 59.084 61.111 0.00 0.00 42.32 4.11
1107 1654 3.873812 GCCGGGATGAATCGGGGT 61.874 66.667 2.18 0.00 45.75 4.95
1108 1655 4.643387 GGCCGGGATGAATCGGGG 62.643 72.222 2.18 0.00 45.75 5.73
1109 1656 4.643387 GGGCCGGGATGAATCGGG 62.643 72.222 2.18 0.00 45.75 5.14
1111 1658 2.281070 CTGGGCCGGGATGAATCG 60.281 66.667 3.77 0.00 0.00 3.34
1112 1659 2.113986 CCTGGGCCGGGATGAATC 59.886 66.667 28.43 0.00 29.82 2.52
1113 1660 2.368192 TCCTGGGCCGGGATGAAT 60.368 61.111 30.71 0.00 33.41 2.57
1114 1661 3.089874 CTCCTGGGCCGGGATGAA 61.090 66.667 33.90 12.61 38.36 2.57
1115 1662 4.414956 ACTCCTGGGCCGGGATGA 62.415 66.667 33.90 13.01 38.36 2.92
1116 1663 3.866582 GACTCCTGGGCCGGGATG 61.867 72.222 33.90 26.94 38.36 3.51
1122 1669 1.997874 ACAGATGGACTCCTGGGCC 60.998 63.158 0.00 0.00 45.52 5.80
1123 1670 1.222936 CACAGATGGACTCCTGGGC 59.777 63.158 0.00 0.00 34.85 5.36
1124 1671 0.539051 GTCACAGATGGACTCCTGGG 59.461 60.000 0.00 0.00 35.23 4.45
1125 1672 1.206610 CAGTCACAGATGGACTCCTGG 59.793 57.143 0.00 0.00 43.47 4.45
1126 1673 1.405256 GCAGTCACAGATGGACTCCTG 60.405 57.143 0.00 0.00 43.47 3.86
1127 1674 0.901124 GCAGTCACAGATGGACTCCT 59.099 55.000 0.00 0.00 43.47 3.69
1128 1675 0.459237 CGCAGTCACAGATGGACTCC 60.459 60.000 0.00 0.00 43.47 3.85
1129 1676 0.244994 ACGCAGTCACAGATGGACTC 59.755 55.000 0.00 0.00 43.47 3.36
1150 1697 6.468319 AGAAATACGTATCAAGAAAGTCGTCG 59.532 38.462 8.86 0.00 33.70 5.12
1189 1736 3.911964 GTGCGATACAAATGGTGAACAAC 59.088 43.478 0.00 0.00 0.00 3.32
1191 1738 3.407698 AGTGCGATACAAATGGTGAACA 58.592 40.909 0.00 0.00 0.00 3.18
1192 1739 3.684788 AGAGTGCGATACAAATGGTGAAC 59.315 43.478 0.00 0.00 0.00 3.18
1193 1740 3.684305 CAGAGTGCGATACAAATGGTGAA 59.316 43.478 0.00 0.00 0.00 3.18
1205 1754 1.472201 CCTGCATACACAGAGTGCGAT 60.472 52.381 0.00 0.00 41.61 4.58
1206 1755 0.108662 CCTGCATACACAGAGTGCGA 60.109 55.000 0.00 0.00 41.61 5.10
1207 1756 0.108662 TCCTGCATACACAGAGTGCG 60.109 55.000 0.00 0.00 41.61 5.34
1215 1764 0.740737 GGCCAACATCCTGCATACAC 59.259 55.000 0.00 0.00 0.00 2.90
1216 1765 0.330941 TGGCCAACATCCTGCATACA 59.669 50.000 0.61 0.00 0.00 2.29
1217 1766 1.027357 CTGGCCAACATCCTGCATAC 58.973 55.000 7.01 0.00 0.00 2.39
1218 1767 0.106569 CCTGGCCAACATCCTGCATA 60.107 55.000 7.01 0.00 0.00 3.14
1219 1768 1.380785 CCTGGCCAACATCCTGCAT 60.381 57.895 7.01 0.00 0.00 3.96
1253 1802 3.468140 GGCCGTCAGGTAGGGGAC 61.468 72.222 0.00 0.00 40.50 4.46
1260 1809 1.227853 GTTTCAGTGGCCGTCAGGT 60.228 57.895 0.00 0.00 40.50 4.00
1288 1837 0.391793 GTTGGAAGAAGGCCGAGGAG 60.392 60.000 0.00 0.00 0.00 3.69
1326 1875 6.392911 TGGTTAGTCTTAGTCAGGTAGGTA 57.607 41.667 0.00 0.00 0.00 3.08
1330 1879 6.376581 GCTAGTTGGTTAGTCTTAGTCAGGTA 59.623 42.308 0.00 0.00 0.00 3.08
1331 1880 5.185442 GCTAGTTGGTTAGTCTTAGTCAGGT 59.815 44.000 0.00 0.00 0.00 4.00
1333 1882 5.419471 AGGCTAGTTGGTTAGTCTTAGTCAG 59.581 44.000 0.00 0.00 31.76 3.51
1334 1883 5.331069 AGGCTAGTTGGTTAGTCTTAGTCA 58.669 41.667 0.00 0.00 31.76 3.41
1335 1884 5.918426 AGGCTAGTTGGTTAGTCTTAGTC 57.082 43.478 0.00 0.00 31.76 2.59
1336 1885 5.360429 GCTAGGCTAGTTGGTTAGTCTTAGT 59.640 44.000 21.92 0.00 36.93 2.24
1337 1886 5.221283 GGCTAGGCTAGTTGGTTAGTCTTAG 60.221 48.000 21.92 0.00 36.93 2.18
1338 1887 4.648307 GGCTAGGCTAGTTGGTTAGTCTTA 59.352 45.833 21.92 0.00 36.93 2.10
1339 1888 3.451540 GGCTAGGCTAGTTGGTTAGTCTT 59.548 47.826 21.92 0.00 36.93 3.01
1340 1889 3.032459 GGCTAGGCTAGTTGGTTAGTCT 58.968 50.000 21.92 0.00 38.96 3.24
1348 1897 1.204146 TCAAGGGGCTAGGCTAGTTG 58.796 55.000 21.92 17.27 0.00 3.16
1354 1903 0.033109 ACCAAATCAAGGGGCTAGGC 60.033 55.000 8.00 8.00 0.00 3.93
1355 1904 2.532250 AACCAAATCAAGGGGCTAGG 57.468 50.000 0.00 0.00 0.00 3.02
1396 1953 8.485578 ACAAAATTCCCCAATAAACAGAGTAA 57.514 30.769 0.00 0.00 0.00 2.24
1526 2106 6.859017 TGGCATGTATGAATATGATTGATGC 58.141 36.000 0.00 0.00 34.31 3.91
1527 2107 8.051901 ACTGGCATGTATGAATATGATTGATG 57.948 34.615 0.00 0.00 0.00 3.07
1586 2166 7.164171 CGTTTTCTTACATTTGTGAACAGTCAG 59.836 37.037 0.00 0.00 33.27 3.51
1587 2167 6.964370 CGTTTTCTTACATTTGTGAACAGTCA 59.036 34.615 0.00 0.00 0.00 3.41
1588 2168 6.964934 ACGTTTTCTTACATTTGTGAACAGTC 59.035 34.615 0.00 0.00 0.00 3.51
1589 2169 6.848451 ACGTTTTCTTACATTTGTGAACAGT 58.152 32.000 0.00 0.00 0.00 3.55
1590 2170 7.186804 AGACGTTTTCTTACATTTGTGAACAG 58.813 34.615 0.00 0.00 0.00 3.16
1591 2171 7.079182 AGACGTTTTCTTACATTTGTGAACA 57.921 32.000 0.00 0.00 0.00 3.18
1592 2172 7.964545 AAGACGTTTTCTTACATTTGTGAAC 57.035 32.000 0.00 0.00 43.27 3.18
1603 2183 9.100554 TGTTGAGAAATGTAAGACGTTTTCTTA 57.899 29.630 10.96 5.58 43.27 2.10
1604 2184 7.981142 TGTTGAGAAATGTAAGACGTTTTCTT 58.019 30.769 10.96 3.14 46.91 2.52
1605 2185 7.494625 TCTGTTGAGAAATGTAAGACGTTTTCT 59.505 33.333 9.75 9.75 37.43 2.52
1606 2186 7.627340 TCTGTTGAGAAATGTAAGACGTTTTC 58.373 34.615 0.00 0.00 37.43 2.29
1607 2187 7.254795 CCTCTGTTGAGAAATGTAAGACGTTTT 60.255 37.037 0.00 0.00 42.73 2.43
1608 2188 6.202954 CCTCTGTTGAGAAATGTAAGACGTTT 59.797 38.462 0.00 0.00 42.73 3.60
1609 2189 5.696724 CCTCTGTTGAGAAATGTAAGACGTT 59.303 40.000 0.00 0.00 42.73 3.99
1610 2190 5.230942 CCTCTGTTGAGAAATGTAAGACGT 58.769 41.667 0.00 0.00 42.73 4.34
1611 2191 4.627467 CCCTCTGTTGAGAAATGTAAGACG 59.373 45.833 0.00 0.00 42.73 4.18
1612 2192 5.794894 TCCCTCTGTTGAGAAATGTAAGAC 58.205 41.667 0.00 0.00 42.73 3.01
1613 2193 5.046304 CCTCCCTCTGTTGAGAAATGTAAGA 60.046 44.000 0.00 0.00 42.73 2.10
1614 2194 5.181748 CCTCCCTCTGTTGAGAAATGTAAG 58.818 45.833 0.00 0.00 42.73 2.34
1615 2195 4.019321 CCCTCCCTCTGTTGAGAAATGTAA 60.019 45.833 0.00 0.00 42.73 2.41
1616 2196 3.519510 CCCTCCCTCTGTTGAGAAATGTA 59.480 47.826 0.00 0.00 42.73 2.29
1617 2197 2.307098 CCCTCCCTCTGTTGAGAAATGT 59.693 50.000 0.00 0.00 42.73 2.71
1618 2198 2.573462 TCCCTCCCTCTGTTGAGAAATG 59.427 50.000 0.00 0.00 42.73 2.32
1619 2199 2.843113 CTCCCTCCCTCTGTTGAGAAAT 59.157 50.000 0.00 0.00 42.73 2.17
1630 2210 0.850784 AGAGAGCTACTCCCTCCCTC 59.149 60.000 8.89 0.00 45.96 4.30
1631 2211 1.778484 GTAGAGAGCTACTCCCTCCCT 59.222 57.143 8.89 0.00 45.96 4.20
1632 2212 2.281539 GTAGAGAGCTACTCCCTCCC 57.718 60.000 8.89 0.00 45.96 4.30
1664 2248 6.883217 AGTTGCACATATCATCTGAATATCCC 59.117 38.462 0.00 0.00 0.00 3.85
1699 2285 4.773674 TGTGCTTGGTAGTAGTAAAGCCTA 59.226 41.667 10.24 0.00 43.46 3.93
1700 2286 3.581332 TGTGCTTGGTAGTAGTAAAGCCT 59.419 43.478 10.24 0.00 43.46 4.58
1702 2288 6.496338 AAATGTGCTTGGTAGTAGTAAAGC 57.504 37.500 6.95 6.95 44.18 3.51
1721 2309 8.616076 GGACTCAGATTCCAAACTGTATAAATG 58.384 37.037 1.81 0.00 35.84 2.32
1723 2311 7.110155 GGGACTCAGATTCCAAACTGTATAAA 58.890 38.462 8.98 0.00 34.45 1.40
1725 2313 5.130477 GGGGACTCAGATTCCAAACTGTATA 59.870 44.000 8.98 0.00 34.45 1.47
1726 2314 4.080299 GGGGACTCAGATTCCAAACTGTAT 60.080 45.833 8.98 0.00 34.45 2.29
1750 2338 7.889589 TGAATGTCAATGTAGTTGTAGTCTG 57.110 36.000 0.00 0.00 38.95 3.51
1753 2341 7.391554 AGCAATGAATGTCAATGTAGTTGTAGT 59.608 33.333 0.00 0.00 38.95 2.73
1754 2342 7.755591 AGCAATGAATGTCAATGTAGTTGTAG 58.244 34.615 0.00 0.00 38.95 2.74
1755 2343 7.686438 AGCAATGAATGTCAATGTAGTTGTA 57.314 32.000 0.00 0.00 38.95 2.41
1757 2345 6.183360 GCAAGCAATGAATGTCAATGTAGTTG 60.183 38.462 0.00 0.23 39.25 3.16
1758 2346 5.865552 GCAAGCAATGAATGTCAATGTAGTT 59.134 36.000 0.00 0.00 30.25 2.24
1760 2348 5.647589 AGCAAGCAATGAATGTCAATGTAG 58.352 37.500 0.00 0.00 30.25 2.74
1761 2349 5.416639 AGAGCAAGCAATGAATGTCAATGTA 59.583 36.000 0.00 0.00 30.25 2.29
1762 2350 4.219944 AGAGCAAGCAATGAATGTCAATGT 59.780 37.500 0.00 0.00 30.25 2.71
1763 2351 4.744570 AGAGCAAGCAATGAATGTCAATG 58.255 39.130 0.00 0.00 30.72 2.82
1764 2352 5.416639 TGTAGAGCAAGCAATGAATGTCAAT 59.583 36.000 0.00 0.00 0.00 2.57
1767 2355 4.952262 TGTAGAGCAAGCAATGAATGTC 57.048 40.909 0.00 0.00 0.00 3.06
1786 2374 5.016831 GGGGGATGTTAAGTTGAGATTTGT 58.983 41.667 0.00 0.00 0.00 2.83
1808 2422 1.068954 GCAGAGAAAACAAAGGAGCGG 60.069 52.381 0.00 0.00 0.00 5.52
1810 2424 3.715628 TTGCAGAGAAAACAAAGGAGC 57.284 42.857 0.00 0.00 0.00 4.70
1812 2426 5.827797 AGTACATTGCAGAGAAAACAAAGGA 59.172 36.000 0.00 0.00 0.00 3.36
1857 2480 4.216472 GGCAGAGAAACTAAGAAAACTGGG 59.784 45.833 0.00 0.00 0.00 4.45
1862 2485 5.299279 CCAACAGGCAGAGAAACTAAGAAAA 59.701 40.000 0.00 0.00 0.00 2.29
1897 2520 1.203523 ACTCACTCAGAAGTCATCGGC 59.796 52.381 0.00 0.00 31.71 5.54
1921 2545 4.442192 GCACTGGAGGAATAGAAGACGAAT 60.442 45.833 0.00 0.00 0.00 3.34
1974 2600 5.532406 TCTTGTTCCATGTTTCTTCTTGGAG 59.468 40.000 0.00 0.00 40.81 3.86
2021 2647 3.201726 CACCTTTAGTGTTTCCATGCG 57.798 47.619 0.00 0.00 41.93 4.73
2039 2665 1.909700 TCCTTGAATCCCACTTGCAC 58.090 50.000 0.00 0.00 0.00 4.57
2047 2673 1.824852 ACGCCATTTTCCTTGAATCCC 59.175 47.619 0.00 0.00 0.00 3.85
2067 2693 1.244816 CTGGGTCAGACGACAGTGTA 58.755 55.000 13.23 0.00 44.54 2.90
2076 2707 1.376553 GGCTTGAGCTGGGTCAGAC 60.377 63.158 0.00 0.00 41.70 3.51
2173 2807 0.459237 AGCATCTTCTCGGCGTCTTG 60.459 55.000 6.85 0.00 0.00 3.02
2301 2935 1.439644 GTCGTCATCAGAGAGCCCC 59.560 63.158 0.00 0.00 0.00 5.80
2409 3043 1.282738 GTCTTCCCGTTTATCCCCCAA 59.717 52.381 0.00 0.00 0.00 4.12
2549 3249 2.750948 TCTGAAGGTGTTCGCAGTAAC 58.249 47.619 0.00 0.00 35.17 2.50
2578 3278 2.811431 CCGATGCAAAAACAGAGTACCA 59.189 45.455 0.00 0.00 0.00 3.25
2580 3280 4.483476 AACCGATGCAAAAACAGAGTAC 57.517 40.909 0.00 0.00 0.00 2.73
2604 3304 8.355169 CCATCTATACAAATCTGATTGGTTTGG 58.645 37.037 15.21 9.91 37.20 3.28
2611 3339 7.993416 ACATCCCCATCTATACAAATCTGATT 58.007 34.615 0.00 0.00 0.00 2.57
2613 3341 8.504811 TTACATCCCCATCTATACAAATCTGA 57.495 34.615 0.00 0.00 0.00 3.27
2644 3372 4.771903 TGAGCCTTGTAAATACGCCAATA 58.228 39.130 0.00 0.00 0.00 1.90
2645 3373 3.616219 TGAGCCTTGTAAATACGCCAAT 58.384 40.909 0.00 0.00 0.00 3.16
2861 3714 7.500992 TGCTAGCATAACTTCTAAACTGCTAT 58.499 34.615 14.93 0.00 40.33 2.97
2877 3730 5.505780 AGTGGTTATGGTTTTGCTAGCATA 58.494 37.500 20.13 11.56 37.43 3.14
3116 4026 3.031964 GCCATGTCTGAGTGTGCGC 62.032 63.158 0.00 0.00 0.00 6.09
3117 4027 1.668793 TGCCATGTCTGAGTGTGCG 60.669 57.895 0.00 0.00 0.00 5.34
3118 4028 1.871772 GTGCCATGTCTGAGTGTGC 59.128 57.895 0.00 0.00 0.00 4.57
3119 4029 0.319813 TCGTGCCATGTCTGAGTGTG 60.320 55.000 0.00 0.00 0.00 3.82
3120 4030 0.319900 GTCGTGCCATGTCTGAGTGT 60.320 55.000 0.00 0.00 0.00 3.55
3121 4031 1.347097 CGTCGTGCCATGTCTGAGTG 61.347 60.000 0.00 0.00 0.00 3.51
3122 4032 1.080501 CGTCGTGCCATGTCTGAGT 60.081 57.895 0.00 0.00 0.00 3.41
3124 4034 1.372872 CACGTCGTGCCATGTCTGA 60.373 57.895 13.22 0.00 0.00 3.27
3125 4035 3.159070 CACGTCGTGCCATGTCTG 58.841 61.111 13.22 0.00 0.00 3.51
3158 4068 5.376854 TTTGCTTTCAATAAGAGAGTGCC 57.623 39.130 0.00 0.00 31.32 5.01
3161 4071 6.920210 GTGCTTTTTGCTTTCAATAAGAGAGT 59.080 34.615 10.78 0.00 41.03 3.24
3181 4091 5.047660 TGTTGGTTTCTTAACTTGTGTGCTT 60.048 36.000 0.00 0.00 34.59 3.91
3182 4092 4.461081 TGTTGGTTTCTTAACTTGTGTGCT 59.539 37.500 0.00 0.00 34.59 4.40
3194 4104 0.663153 GAGCGTGCTGTTGGTTTCTT 59.337 50.000 0.00 0.00 0.00 2.52
3210 4120 6.560253 TCATTTCCTACTTTTGAGTTGAGC 57.440 37.500 0.00 0.00 0.00 4.26
3234 4145 8.801299 TCCTGTTGTGCTGATTTTATTTTCATA 58.199 29.630 0.00 0.00 0.00 2.15
3242 4153 4.761739 CCTCTTCCTGTTGTGCTGATTTTA 59.238 41.667 0.00 0.00 0.00 1.52
3266 4184 1.075601 AATTGGTGCCTTCTCCTCCA 58.924 50.000 0.00 0.00 0.00 3.86
3302 4220 9.158233 CTCCCGTTTGAAACTCATTATACTTTA 57.842 33.333 6.49 0.00 0.00 1.85
3313 4231 0.591659 GGTGCTCCCGTTTGAAACTC 59.408 55.000 6.49 0.00 0.00 3.01
3314 4232 0.182775 AGGTGCTCCCGTTTGAAACT 59.817 50.000 6.49 0.00 38.74 2.66
3315 4233 0.310854 CAGGTGCTCCCGTTTGAAAC 59.689 55.000 0.00 0.00 38.74 2.78
3316 4234 0.106918 ACAGGTGCTCCCGTTTGAAA 60.107 50.000 0.00 0.00 38.74 2.69
3349 4297 2.695666 ACATACCAAGTCATCCTCTCGG 59.304 50.000 0.00 0.00 0.00 4.63
3387 4335 5.031495 TGGTCATTGATGGGAATGGAAATT 58.969 37.500 0.00 0.00 34.58 1.82
3405 4353 5.630121 ACAAATGTCTGGTTCTTATGGTCA 58.370 37.500 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.