AutoCloner

Multiple sequence alignment - TraesCS5B01G518900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G518900	chr5B	100.000	3380	0	0	1	3380	681780899	681777520	0.000000e+00	6242.0
1	TraesCS5B01G518900	chr5B	83.762	1595	173	45	785	2363	681817289	681815765	0.000000e+00	1432.0
2	TraesCS5B01G518900	chr5B	85.759	316	28	6	1	314	326893438	326893138	5.440000e-83	318.0
3	TraesCS5B01G518900	chr5B	89.637	193	17	3	2974	3164	681824760	681824951	3.370000e-60	243.0
4	TraesCS5B01G518900	chr5B	89.674	184	17	2	2982	3164	681789366	681789548	2.030000e-57	233.0
5	TraesCS5B01G518900	chr5D	96.284	1534	50	4	720	2251	539786517	539784989	0.000000e+00	2510.0
6	TraesCS5B01G518900	chr5D	93.339	1111	38	13	2302	3380	539784824	539783718	0.000000e+00	1609.0
7	TraesCS5B01G518900	chr5D	84.024	1640	176	42	750	2363	539814691	539813112	0.000000e+00	1498.0
8	TraesCS5B01G518900	chr5D	84.349	722	58	27	1	718	539787507	539786837	0.000000e+00	656.0
9	TraesCS5B01G518900	chr5D	80.656	305	42	11	2870	3164	539792875	539793172	1.580000e-53	220.0
10	TraesCS5B01G518900	chr5D	86.432	199	19	4	2974	3164	539823662	539823860	9.500000e-51	211.0
11	TraesCS5B01G518900	chr5D	92.553	94	7	0	3185	3278	472740183	472740090	5.880000e-28	135.0
12	TraesCS5B01G518900	chr4A	93.642	1447	69	8	961	2406	628635507	628636931	0.000000e+00	2141.0
13	TraesCS5B01G518900	chr4A	83.551	1605	182	40	782	2363	628622505	628624050	0.000000e+00	1426.0
14	TraesCS5B01G518900	chr4A	94.588	425	18	4	2638	3061	628637153	628637573	0.000000e+00	652.0
15	TraesCS5B01G518900	chr4A	94.463	307	10	4	681	986	628635194	628635494	1.840000e-127	466.0
16	TraesCS5B01G518900	chr4A	87.437	199	17	5	2974	3164	628611451	628611253	4.390000e-54	222.0
17	TraesCS5B01G518900	chr4A	77.451	408	56	22	2787	3164	628630434	628630033	9.500000e-51	211.0
18	TraesCS5B01G518900	chr4A	94.697	132	6	1	3055	3186	628642737	628642867	1.590000e-48	204.0
19	TraesCS5B01G518900	chr4A	90.625	96	7	2	3184	3278	136892336	136892242	3.540000e-25	126.0
20	TraesCS5B01G518900	chr4A	86.813	91	11	1	3029	3118	628624224	628624314	2.150000e-17	100.0
21	TraesCS5B01G518900	chr3D	86.252	691	72	11	1	681	539868020	539867343	0.000000e+00	728.0
22	TraesCS5B01G518900	chr3D	87.755	98	11	1	3185	3281	575943023	575942926	2.760000e-21	113.0
23	TraesCS5B01G518900	chr1A	86.176	680	60	20	1	679	539767951	539767305	0.000000e+00	704.0
24	TraesCS5B01G518900	chr1A	88.889	99	9	2	3184	3281	566218079	566218176	1.650000e-23	121.0
25	TraesCS5B01G518900	chr7B	79.007	705	95	32	3	675	713241910	713242593	1.860000e-117	433.0
26	TraesCS5B01G518900	chr7B	80.323	310	47	12	382	680	477974004	477974310	4.390000e-54	222.0
27	TraesCS5B01G518900	chr2B	80.825	485	49	19	1	460	731210235	731209770	1.160000e-89	340.0
28	TraesCS5B01G518900	chr2B	81.505	319	45	12	375	682	677043731	677043416	2.010000e-62	250.0
29	TraesCS5B01G518900	chr2B	92.553	94	7	0	3185	3278	728343402	728343309	5.880000e-28	135.0
30	TraesCS5B01G518900	chr2B	100.000	29	0	0	371	399	411134758	411134786	2.000000e-03	54.7
31	TraesCS5B01G518900	chr3B	82.449	245	32	8	443	678	4304939	4304697	1.590000e-48	204.0
32	TraesCS5B01G518900	chr2A	75.974	462	74	28	156	601	775603348	775603788	1.590000e-48	204.0
33	TraesCS5B01G518900	chr1B	82.114	246	35	7	443	680	131779459	131779215	5.720000e-48	202.0
34	TraesCS5B01G518900	chr3A	90.370	135	7	5	1	133	623195788	623195918	4.480000e-39	172.0
35	TraesCS5B01G518900	chr2D	91.489	94	8	0	3185	3278	598951324	598951231	2.740000e-26	130.0
36	TraesCS5B01G518900	chr7A	98.551	69	1	0	468	536	109360760	109360828	4.580000e-24	122.0
37	TraesCS5B01G518900	chr7A	88.235	102	10	2	3178	3278	162771911	162771811	1.650000e-23	121.0
38	TraesCS5B01G518900	chr4D	89.691	97	8	2	3182	3277	31820869	31820774	4.580000e-24	122.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G518900	chr5B	681777520	681780899	3379	True	6242.000000	6242	100.000	1	3380	1	chr5B.!!$R2	3379
1	TraesCS5B01G518900	chr5B	681815765	681817289	1524	True	1432.000000	1432	83.762	785	2363	1	chr5B.!!$R3	1578
2	TraesCS5B01G518900	chr5D	539783718	539787507	3789	True	1591.666667	2510	91.324	1	3380	3	chr5D.!!$R3	3379
3	TraesCS5B01G518900	chr5D	539813112	539814691	1579	True	1498.000000	1498	84.024	750	2363	1	chr5D.!!$R2	1613
4	TraesCS5B01G518900	chr4A	628635194	628637573	2379	False	1086.333333	2141	94.231	681	3061	3	chr4A.!!$F3	2380
5	TraesCS5B01G518900	chr4A	628622505	628624314	1809	False	763.000000	1426	85.182	782	3118	2	chr4A.!!$F2	2336
6	TraesCS5B01G518900	chr3D	539867343	539868020	677	True	728.000000	728	86.252	1	681	1	chr3D.!!$R1	680
7	TraesCS5B01G518900	chr1A	539767305	539767951	646	True	704.000000	704	86.176	1	679	1	chr1A.!!$R1	678
8	TraesCS5B01G518900	chr7B	713241910	713242593	683	False	433.000000	433	79.007	3	675	1	chr7B.!!$F2	672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
267	278	0.039617	GACGATCAGCTCCTCCATCG	60.040	60.0	0.00	0.0	43.06	3.84	F
1273	1669	0.106369	CCATCACATCACCATGGGCT	60.106	55.0	18.09	0.0	32.78	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1613	2012	0.762418	TGTGGAGTGTTCGAATGGGT	59.238	50.0	0.00	0.00	0.00	4.51	R
3028	3794	0.107752	TCCGCTGAAGCATGCATACA	60.108	50.0	21.98	14.92	42.21	2.29	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	50	4.988716	ACCTCACTCCGGCCACGA	62.989	66.667	2.24	0.00	44.60	4.35
190	196	0.460284	CGAAGTGCGGCACCTAGATT	60.460	55.000	28.14	16.09	34.49	2.40
208	218	5.736951	AGATTGAAGAGCTAGTTCACACT	57.263	39.130	9.43	9.41	33.63	3.55
267	278	0.039617	GACGATCAGCTCCTCCATCG	60.040	60.000	0.00	0.00	43.06	3.84
411	444	2.442272	CACCCTCGATCCCGGACT	60.442	66.667	0.73	0.00	36.24	3.85
463	496	4.435436	CAGCCGACGCTAGCACCA	62.435	66.667	16.45	0.00	46.25	4.17
638	676	4.742201	GAAGGAGACTGCGCCGCA	62.742	66.667	12.83	12.83	42.68	5.69
922	1279	2.977808	ACCTACCTAGCTACCATGCAT	58.022	47.619	0.00	0.00	34.99	3.96
923	1280	2.634940	ACCTACCTAGCTACCATGCATG	59.365	50.000	20.19	20.19	34.99	4.06
924	1281	2.613977	CCTACCTAGCTACCATGCATGC	60.614	54.545	21.69	11.82	34.99	4.06
925	1282	0.839277	ACCTAGCTACCATGCATGCA	59.161	50.000	25.04	25.04	34.99	3.96
1273	1669	0.106369	CCATCACATCACCATGGGCT	60.106	55.000	18.09	0.00	32.78	5.19
1386	1785	1.146930	CCACACGAGCAGGCCATAT	59.853	57.895	5.01	0.00	0.00	1.78
1485	1884	3.441290	GCCAAGGAGCAGCAGCAG	61.441	66.667	3.17	0.00	45.49	4.24
1568	1967	2.510613	GGTAGCTTTTAGTGCACCCAA	58.489	47.619	14.63	5.19	0.00	4.12
1607	2006	5.227569	TCCTTCTCAGATTACTTGCACAA	57.772	39.130	0.00	0.00	0.00	3.33
1608	2007	5.809001	TCCTTCTCAGATTACTTGCACAAT	58.191	37.500	0.00	0.00	0.00	2.71
1613	2012	9.371136	CTTCTCAGATTACTTGCACAATAGTTA	57.629	33.333	0.00	0.00	0.00	2.24
1622	2021	4.209307	TGCACAATAGTTACCCATTCGA	57.791	40.909	0.00	0.00	0.00	3.71
1636	2035	1.195448	CATTCGAACACTCCACAGCAC	59.805	52.381	0.00	0.00	0.00	4.40
1698	2097	1.002087	CTCCCTTACCACACACCAGTC	59.998	57.143	0.00	0.00	0.00	3.51
1744	2143	4.841422	AGATGCTTTAGATCAGTTGCTGT	58.159	39.130	0.00	0.00	32.61	4.40
1779	2178	0.976641	CACTAGGGCTCAACCTGACA	59.023	55.000	0.00	0.00	42.02	3.58
1792	2191	1.278985	ACCTGACATTCGATGGCTTCA	59.721	47.619	1.08	0.00	39.69	3.02
1793	2192	2.290260	ACCTGACATTCGATGGCTTCAA	60.290	45.455	1.08	0.00	39.69	2.69
1908	2310	3.456644	CCTACTCTGTCTACTCCTCTCCA	59.543	52.174	0.00	0.00	0.00	3.86
1913	2315	0.394625	GTCTACTCCTCTCCACCGCT	60.395	60.000	0.00	0.00	0.00	5.52
1970	2372	0.249911	GCCGAGAACACCTCACAGTT	60.250	55.000	0.00	0.00	42.06	3.16
2107	2521	1.153939	CTCGAGAGTGTGGAAGGCG	60.154	63.158	6.58	0.00	0.00	5.52
2108	2522	2.125912	CGAGAGTGTGGAAGGCGG	60.126	66.667	0.00	0.00	0.00	6.13
2109	2523	2.932234	CGAGAGTGTGGAAGGCGGT	61.932	63.158	0.00	0.00	0.00	5.68
2110	2524	1.374758	GAGAGTGTGGAAGGCGGTG	60.375	63.158	0.00	0.00	0.00	4.94
2111	2525	1.816863	GAGAGTGTGGAAGGCGGTGA	61.817	60.000	0.00	0.00	0.00	4.02
2112	2526	1.070786	GAGTGTGGAAGGCGGTGAA	59.929	57.895	0.00	0.00	0.00	3.18
2113	2527	0.951040	GAGTGTGGAAGGCGGTGAAG	60.951	60.000	0.00	0.00	0.00	3.02
2114	2528	1.070786	GTGTGGAAGGCGGTGAAGA	59.929	57.895	0.00	0.00	0.00	2.87
2115	2529	1.070786	TGTGGAAGGCGGTGAAGAC	59.929	57.895	0.00	0.00	0.00	3.01
2116	2530	2.027625	GTGGAAGGCGGTGAAGACG	61.028	63.158	0.00	0.00	0.00	4.18
2117	2531	2.204461	TGGAAGGCGGTGAAGACGA	61.204	57.895	0.00	0.00	0.00	4.20
2118	2532	1.218316	GGAAGGCGGTGAAGACGAT	59.782	57.895	0.00	0.00	0.00	3.73
2121	2535	0.537188	AAGGCGGTGAAGACGATGAT	59.463	50.000	0.00	0.00	0.00	2.45
2241	2655	2.422746	AGCTATAGTGAGGCCCCAAAT	58.577	47.619	0.00	0.00	0.00	2.32
2245	2673	4.762251	GCTATAGTGAGGCCCCAAATTAAG	59.238	45.833	0.00	0.00	0.00	1.85
2284	2724	6.445786	AGTTGTCTAATAATGAGGGGGTGTTA	59.554	38.462	0.00	0.00	0.00	2.41
2285	2725	6.894735	TGTCTAATAATGAGGGGGTGTTAA	57.105	37.500	0.00	0.00	0.00	2.01
2286	2726	7.460214	TGTCTAATAATGAGGGGGTGTTAAT	57.540	36.000	0.00	0.00	0.00	1.40
2287	2727	7.878495	TGTCTAATAATGAGGGGGTGTTAATT	58.122	34.615	0.00	0.00	0.00	1.40
2288	2728	8.340757	TGTCTAATAATGAGGGGGTGTTAATTT	58.659	33.333	0.00	0.00	0.00	1.82
2289	2729	9.197306	GTCTAATAATGAGGGGGTGTTAATTTT	57.803	33.333	0.00	0.00	0.00	1.82
2290	2730	9.777008	TCTAATAATGAGGGGGTGTTAATTTTT	57.223	29.630	0.00	0.00	0.00	1.94
2291	2731	9.816354	CTAATAATGAGGGGGTGTTAATTTTTG	57.184	33.333	0.00	0.00	0.00	2.44
2292	2732	8.442660	AATAATGAGGGGGTGTTAATTTTTGA	57.557	30.769	0.00	0.00	0.00	2.69
2410	2952	6.427853	CAGTTCATCATTTCACTGTACCTCAA	59.572	38.462	0.00	0.00	33.35	3.02
2411	2953	6.998074	AGTTCATCATTTCACTGTACCTCAAA	59.002	34.615	0.00	0.00	0.00	2.69
2412	2954	7.667219	AGTTCATCATTTCACTGTACCTCAAAT	59.333	33.333	0.00	0.00	0.00	2.32
2413	2955	8.946085	GTTCATCATTTCACTGTACCTCAAATA	58.054	33.333	0.00	0.00	0.00	1.40
2414	2956	9.513906	TTCATCATTTCACTGTACCTCAAATAA	57.486	29.630	0.00	0.00	0.00	1.40
2575	3312	4.343811	ACTTCTGTAGAATCTCGTCACG	57.656	45.455	0.00	0.00	33.01	4.35
2747	3489	7.817418	TTCTGTTTTTGCTATGACTTTACCT	57.183	32.000	0.00	0.00	0.00	3.08
2766	3508	3.200165	ACCTTAGTTTGGTAGGATCCTGC	59.800	47.826	25.28	22.96	35.80	4.85
2979	3745	6.597832	AAGATACTACCTCCATGCATAGAC	57.402	41.667	0.00	0.00	0.00	2.59
3027	3793	6.319658	CACAAATATTGGTCTTAGCCTGACAT	59.680	38.462	0.00	0.00	36.26	3.06
3028	3794	6.891908	ACAAATATTGGTCTTAGCCTGACATT	59.108	34.615	0.00	0.00	36.26	2.71
3190	3966	2.457598	TCACCTCTGTGATGTACTCCC	58.542	52.381	0.00	0.00	46.40	4.30
3194	3970	2.624293	CCTCTGTGATGTACTCCCTCCA	60.624	54.545	0.00	0.00	0.00	3.86
3289	4065	4.153411	CGGAGGGAGTATATTGGTTCTCT	58.847	47.826	0.00	0.00	0.00	3.10
3298	4074	8.074972	GGAGTATATTGGTTCTCTACGTAGTTG	58.925	40.741	21.53	15.33	37.78	3.16
3302	4078	4.494350	TGGTTCTCTACGTAGTTGTGTC	57.506	45.455	21.53	9.36	37.78	3.67
3323	4099	2.683867	CCGAGTAGAGTTTCAGGATCGT	59.316	50.000	0.00	0.00	0.00	3.73
3324	4100	3.128938	CCGAGTAGAGTTTCAGGATCGTT	59.871	47.826	0.00	0.00	0.00	3.85
3325	4101	4.334759	CCGAGTAGAGTTTCAGGATCGTTA	59.665	45.833	0.00	0.00	0.00	3.18
3326	4102	5.264712	CGAGTAGAGTTTCAGGATCGTTAC	58.735	45.833	0.00	0.00	0.00	2.50
3358	4137	2.046314	CCTGTGGTGGGGCTAACG	60.046	66.667	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	50	0.761187	CATGGTGGATCGTGGGATCT	59.239	55.000	4.30	0.00	46.77	2.75
131	136	3.349006	GTGGTGGTGCTCGCAGTG	61.349	66.667	0.00	0.00	0.00	3.66
132	137	4.626081	GGTGGTGGTGCTCGCAGT	62.626	66.667	0.00	0.00	0.00	4.40
185	191	6.842437	AGTGTGAACTAGCTCTTCAATCTA	57.158	37.500	8.05	0.00	29.44	1.98
190	196	5.358442	GGATCTAGTGTGAACTAGCTCTTCA	59.642	44.000	13.48	0.00	39.50	3.02
253	264	2.364186	TGCCGATGGAGGAGCTGA	60.364	61.111	0.00	0.00	0.00	4.26
286	297	2.275380	TGGCGAGTGTGCTGCTCTA	61.275	57.895	0.00	0.00	34.52	2.43
397	430	2.196925	CCTCAGTCCGGGATCGAGG	61.197	68.421	22.81	22.81	39.00	4.63
399	432	2.833582	GCCTCAGTCCGGGATCGA	60.834	66.667	0.00	0.00	39.00	3.59
400	433	3.917760	GGCCTCAGTCCGGGATCG	61.918	72.222	0.00	0.00	0.00	3.69
664	702	2.279517	GTATCCAGCCCTCGCGTG	60.280	66.667	5.77	2.75	41.18	5.34
718	756	5.818136	AACGTTGGAGGACAATGATATTG	57.182	39.130	0.00	0.28	46.77	1.90
1273	1669	3.149196	GCTCTTCTTGGTGTGATTTGGA	58.851	45.455	0.00	0.00	0.00	3.53
1386	1785	2.604912	TGTTGAGTAGCCTCTCCTGA	57.395	50.000	3.78	0.00	38.61	3.86
1485	1884	2.538437	TGTTGCACAAGTTGTTGATGC	58.462	42.857	5.57	7.50	39.32	3.91
1524	1923	2.540383	TGATCTTGCACTACCTGGACT	58.460	47.619	0.00	0.00	0.00	3.85
1568	1967	4.411540	AGAAGGAACCATATGAGCTCATGT	59.588	41.667	34.48	27.24	37.15	3.21
1607	2006	4.468510	TGGAGTGTTCGAATGGGTAACTAT	59.531	41.667	0.00	0.00	41.01	2.12
1608	2007	3.833650	TGGAGTGTTCGAATGGGTAACTA	59.166	43.478	0.00	0.00	0.00	2.24
1613	2012	0.762418	TGTGGAGTGTTCGAATGGGT	59.238	50.000	0.00	0.00	0.00	4.51
1622	2021	1.103398	GCTTGGTGCTGTGGAGTGTT	61.103	55.000	0.00	0.00	38.95	3.32
1698	2097	2.961768	GGAACCATGGGTGCAACG	59.038	61.111	17.69	0.00	38.12	4.10
1779	2178	2.026641	CCACCATTGAAGCCATCGAAT	58.973	47.619	0.00	0.00	0.00	3.34
1792	2191	2.563798	CGGCAGCAACACCACCATT	61.564	57.895	0.00	0.00	0.00	3.16
1793	2192	2.974692	TTCGGCAGCAACACCACCAT	62.975	55.000	0.00	0.00	0.00	3.55
1913	2315	4.451150	GGCTCACCATCGTCGCCA	62.451	66.667	0.00	0.00	36.21	5.69
2107	2521	0.815615	GCCCCATCATCGTCTTCACC	60.816	60.000	0.00	0.00	0.00	4.02
2108	2522	0.815615	GGCCCCATCATCGTCTTCAC	60.816	60.000	0.00	0.00	0.00	3.18
2109	2523	1.526887	GGCCCCATCATCGTCTTCA	59.473	57.895	0.00	0.00	0.00	3.02
2110	2524	1.595382	CGGCCCCATCATCGTCTTC	60.595	63.158	0.00	0.00	0.00	2.87
2111	2525	2.505982	CGGCCCCATCATCGTCTT	59.494	61.111	0.00	0.00	0.00	3.01
2112	2526	4.241555	GCGGCCCCATCATCGTCT	62.242	66.667	0.00	0.00	0.00	4.18
2186	2600	2.048503	ACACGTCTTGGCCGTAGC	60.049	61.111	0.00	0.00	36.65	3.58
2241	2655	7.832769	AGACAACTTTTTGCACCTTAACTTAA	58.167	30.769	0.00	0.00	36.00	1.85
2245	2673	9.738832	TTATTAGACAACTTTTTGCACCTTAAC	57.261	29.630	0.00	0.00	36.00	2.01
2387	2929	6.801539	TTGAGGTACAGTGAAATGATGAAC	57.198	37.500	0.00	0.00	0.00	3.18
2411	2953	9.349713	TGAATAGGAGCGTTAATTTCCAATTAT	57.650	29.630	5.87	0.00	33.32	1.28
2412	2954	8.740123	TGAATAGGAGCGTTAATTTCCAATTA	57.260	30.769	5.87	0.00	33.32	1.40
2413	2955	7.556275	TCTGAATAGGAGCGTTAATTTCCAATT	59.444	33.333	5.87	0.00	33.32	2.32
2414	2956	7.054124	TCTGAATAGGAGCGTTAATTTCCAAT	58.946	34.615	5.87	0.00	33.32	3.16
2547	3284	7.720074	TGACGAGATTCTACAGAAGTATGGTAT	59.280	37.037	0.00	0.00	37.48	2.73
2548	3285	7.012138	GTGACGAGATTCTACAGAAGTATGGTA	59.988	40.741	0.00	0.00	37.48	3.25
2558	3295	3.427243	GTTCCGTGACGAGATTCTACAG	58.573	50.000	6.54	0.00	0.00	2.74
2575	3312	5.335035	GCAGACATAGATACCTAGTCGTTCC	60.335	48.000	0.00	0.00	32.86	3.62
2747	3489	3.054655	GTGGCAGGATCCTACCAAACTAA	60.055	47.826	31.78	8.74	40.80	2.24
2766	3508	1.204941	AGCTAGCTAGTTGTTCGGTGG	59.795	52.381	17.69	0.00	0.00	4.61
2979	3745	1.398958	GCCAGTCTGCTCCTCTAGGG	61.399	65.000	0.00	0.00	35.41	3.53
3027	3793	0.734309	CCGCTGAAGCATGCATACAA	59.266	50.000	21.98	0.00	42.21	2.41
3028	3794	0.107752	TCCGCTGAAGCATGCATACA	60.108	50.000	21.98	14.92	42.21	2.29
3251	4027	7.668492	ACTCCCTCCGTTTCATAATATAAGAC	58.332	38.462	0.00	0.00	0.00	3.01
3267	4043	4.153411	AGAGAACCAATATACTCCCTCCG	58.847	47.826	0.00	0.00	0.00	4.63
3289	4065	3.925379	TCTACTCGGACACAACTACGTA	58.075	45.455	0.00	0.00	0.00	3.57
3298	4074	2.818432	TCCTGAAACTCTACTCGGACAC	59.182	50.000	0.00	0.00	0.00	3.67
3302	4078	2.683867	ACGATCCTGAAACTCTACTCGG	59.316	50.000	0.00	0.00	0.00	4.63
3323	4099	0.177141	GGGTGAGCACGCTATGGTAA	59.823	55.000	10.04	0.00	39.82	2.85
3324	4100	1.820581	GGGTGAGCACGCTATGGTA	59.179	57.895	10.04	0.00	39.82	3.25
3325	4101	2.584608	GGGTGAGCACGCTATGGT	59.415	61.111	10.04	0.00	43.43	3.55

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.