Multiple sequence alignment - TraesCS5B01G518700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G518700 chr5B 100.000 2589 0 0 1 2589 681700895 681698307 0.000000e+00 4782.0
1 TraesCS5B01G518700 chr5B 91.388 418 29 7 256 668 702952610 702953025 1.340000e-157 566.0
2 TraesCS5B01G518700 chr5B 97.683 259 5 1 1 258 525455370 525455112 6.570000e-121 444.0
3 TraesCS5B01G518700 chr5B 97.276 257 5 2 1 256 272458992 272459247 3.960000e-118 435.0
4 TraesCS5B01G518700 chr5B 97.628 253 5 1 5 256 75707471 75707723 1.420000e-117 433.0
5 TraesCS5B01G518700 chr5B 96.887 257 7 1 1 256 6989082 6988826 1.840000e-116 429.0
6 TraesCS5B01G518700 chr5D 88.609 676 55 16 1777 2436 539721677 539722346 0.000000e+00 802.0
7 TraesCS5B01G518700 chr5D 90.681 279 23 1 1037 1312 539718257 539718535 4.070000e-98 368.0
8 TraesCS5B01G518700 chr5D 84.821 336 25 6 1364 1690 539718536 539718854 5.380000e-82 315.0
9 TraesCS5B01G518700 chr3B 83.058 667 95 12 13 671 796069564 796070220 7.980000e-165 590.0
10 TraesCS5B01G518700 chr3B 97.276 257 6 1 1 256 169057085 169057341 3.960000e-118 435.0
11 TraesCS5B01G518700 chr3B 99.367 158 1 0 2432 2589 251204301 251204458 1.170000e-73 287.0
12 TraesCS5B01G518700 chr2D 89.051 411 36 6 256 664 412846261 412845858 3.850000e-138 501.0
13 TraesCS5B01G518700 chr2D 82.410 415 67 6 256 664 101520945 101521359 8.810000e-95 357.0
14 TraesCS5B01G518700 chr2D 79.775 89 17 1 516 603 45543100 45543012 2.150000e-06 63.9
15 TraesCS5B01G518700 chr1B 98.400 250 3 1 7 255 14602257 14602506 3.060000e-119 438.0
16 TraesCS5B01G518700 chr1B 97.276 257 5 2 1 256 677781486 677781231 3.960000e-118 435.0
17 TraesCS5B01G518700 chr1B 95.376 173 5 2 2417 2589 101750673 101750842 3.280000e-69 272.0
18 TraesCS5B01G518700 chr1B 87.037 54 5 2 523 575 324551224 324551276 2.780000e-05 60.2
19 TraesCS5B01G518700 chr7B 97.266 256 5 2 1 255 24957665 24957919 1.420000e-117 433.0
20 TraesCS5B01G518700 chr7B 96.887 257 7 1 1 256 6042372 6042116 1.840000e-116 429.0
21 TraesCS5B01G518700 chr7B 98.758 161 2 0 2429 2589 657668499 657668659 1.170000e-73 287.0
22 TraesCS5B01G518700 chr7B 96.471 170 4 1 2422 2589 688480045 688480214 1.960000e-71 279.0
23 TraesCS5B01G518700 chr4A 88.657 335 21 10 851 1184 628699944 628699626 2.420000e-105 392.0
24 TraesCS5B01G518700 chr4A 77.929 367 39 18 1367 1727 628698634 628698304 9.460000e-45 191.0
25 TraesCS5B01G518700 chr6B 98.758 161 2 0 2429 2589 212729438 212729598 1.170000e-73 287.0
26 TraesCS5B01G518700 chr6B 98.137 161 3 0 2429 2589 548390912 548391072 5.450000e-72 281.0
27 TraesCS5B01G518700 chr6B 75.829 422 95 6 256 671 702295984 702295564 9.390000e-50 207.0
28 TraesCS5B01G518700 chr4B 98.742 159 2 0 2431 2589 590235094 590234936 1.520000e-72 283.0
29 TraesCS5B01G518700 chr2B 98.137 161 3 0 2429 2589 130447973 130447813 5.450000e-72 281.0
30 TraesCS5B01G518700 chr2B 98.137 161 3 0 2429 2589 182379940 182379780 5.450000e-72 281.0
31 TraesCS5B01G518700 chr2B 86.667 60 7 1 516 575 72584555 72584497 5.980000e-07 65.8
32 TraesCS5B01G518700 chr6A 77.525 396 81 6 256 644 17051980 17052374 5.570000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G518700 chr5B 681698307 681700895 2588 True 4782.0 4782 100.000 1 2589 1 chr5B.!!$R3 2588
1 TraesCS5B01G518700 chr5D 539718257 539722346 4089 False 495.0 802 88.037 1037 2436 3 chr5D.!!$F1 1399
2 TraesCS5B01G518700 chr3B 796069564 796070220 656 False 590.0 590 83.058 13 671 1 chr3B.!!$F3 658
3 TraesCS5B01G518700 chr4A 628698304 628699944 1640 True 291.5 392 83.293 851 1727 2 chr4A.!!$R1 876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 815 0.167033 ACAACGCGCGCAATCAATAA 59.833 45.0 32.58 0.0 0.0 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 2517 0.109342 AGCACAGCAGCCAACTAACT 59.891 50.0 0.0 0.0 34.23 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.428622 CCTTTGGTCCCGGTTCGT 59.571 61.111 0.00 0.00 0.00 3.85
81 82 2.437716 CCCATTGGTCCCGGTTCG 60.438 66.667 0.00 0.00 0.00 3.95
82 83 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
101 103 1.455959 CCACCAACCGGGACCAAAA 60.456 57.895 6.32 0.00 41.15 2.44
162 164 4.426313 CCCCCGGGGCTCAAGAAC 62.426 72.222 36.20 0.00 35.35 3.01
167 169 3.647771 GGGGCTCAAGAACCGGGT 61.648 66.667 6.32 0.00 0.00 5.28
181 183 2.123295 GGGTCCAATGCCCCCATC 60.123 66.667 1.18 0.00 40.26 3.51
197 199 1.382695 ATCGGTCCCGGTTCTGGAT 60.383 57.895 5.80 0.00 40.25 3.41
199 201 1.449601 CGGTCCCGGTTCTGGATTG 60.450 63.158 0.00 0.00 33.65 2.67
219 221 1.921869 AACCGGGACTAATGGGCTGG 61.922 60.000 6.32 0.00 0.00 4.85
220 222 2.070039 CCGGGACTAATGGGCTGGA 61.070 63.158 0.00 0.00 0.00 3.86
255 257 2.627933 TGCCCCCTTTTCTACTAGTGT 58.372 47.619 5.39 0.00 0.00 3.55
256 258 2.983898 TGCCCCCTTTTCTACTAGTGTT 59.016 45.455 5.39 0.00 0.00 3.32
257 259 4.169666 TGCCCCCTTTTCTACTAGTGTTA 58.830 43.478 5.39 0.00 0.00 2.41
258 260 4.786454 TGCCCCCTTTTCTACTAGTGTTAT 59.214 41.667 5.39 0.00 0.00 1.89
259 261 5.965705 TGCCCCCTTTTCTACTAGTGTTATA 59.034 40.000 5.39 0.00 0.00 0.98
260 262 6.099269 TGCCCCCTTTTCTACTAGTGTTATAG 59.901 42.308 5.39 0.00 0.00 1.31
261 263 6.325804 GCCCCCTTTTCTACTAGTGTTATAGA 59.674 42.308 5.39 0.00 0.00 1.98
262 264 7.147602 GCCCCCTTTTCTACTAGTGTTATAGAA 60.148 40.741 5.39 3.17 34.02 2.10
263 265 8.765517 CCCCCTTTTCTACTAGTGTTATAGAAA 58.234 37.037 11.90 11.90 41.12 2.52
293 295 6.992063 ACCACTTCAAGCATATCTTTAGTG 57.008 37.500 0.00 0.00 40.77 2.74
300 302 8.948631 TTCAAGCATATCTTTAGTGGAAGTAG 57.051 34.615 0.00 0.00 31.27 2.57
302 304 6.485830 AGCATATCTTTAGTGGAAGTAGCA 57.514 37.500 0.00 0.00 0.00 3.49
305 307 6.017852 GCATATCTTTAGTGGAAGTAGCAACC 60.018 42.308 0.00 0.00 0.00 3.77
309 311 0.693049 AGTGGAAGTAGCAACCCCAG 59.307 55.000 0.00 0.00 31.73 4.45
328 330 0.817229 GTAGGGCCATTCAGCTCAGC 60.817 60.000 6.18 0.00 34.85 4.26
329 331 2.315781 TAGGGCCATTCAGCTCAGCG 62.316 60.000 6.18 0.00 34.85 5.18
332 334 2.178890 GCCATTCAGCTCAGCGAGG 61.179 63.158 0.00 0.00 0.00 4.63
364 366 5.782331 TCCTATGCCTATGATTAGCAAGAGT 59.218 40.000 0.00 0.00 0.00 3.24
365 367 6.270927 TCCTATGCCTATGATTAGCAAGAGTT 59.729 38.462 0.00 0.00 0.00 3.01
367 369 6.874288 ATGCCTATGATTAGCAAGAGTTTC 57.126 37.500 0.00 0.00 0.00 2.78
380 382 4.670221 GCAAGAGTTTCGAAGTAGGCATTG 60.670 45.833 0.00 0.70 0.00 2.82
383 385 5.063880 AGAGTTTCGAAGTAGGCATTGTTT 58.936 37.500 0.00 0.00 0.00 2.83
387 389 6.879458 AGTTTCGAAGTAGGCATTGTTTCTAT 59.121 34.615 0.00 0.00 0.00 1.98
389 391 6.222038 TCGAAGTAGGCATTGTTTCTATCT 57.778 37.500 0.00 0.00 0.00 1.98
391 393 5.463724 CGAAGTAGGCATTGTTTCTATCTCC 59.536 44.000 0.00 0.00 0.00 3.71
392 394 6.567602 AAGTAGGCATTGTTTCTATCTCCT 57.432 37.500 0.00 0.00 0.00 3.69
393 395 6.567602 AGTAGGCATTGTTTCTATCTCCTT 57.432 37.500 0.00 0.00 0.00 3.36
397 400 7.872113 AGGCATTGTTTCTATCTCCTTTTAG 57.128 36.000 0.00 0.00 0.00 1.85
416 419 7.337184 CCTTTTAGGATTTTTCTGTCCCTAGAC 59.663 40.741 0.00 0.00 39.74 2.59
425 428 0.324738 TGTCCCTAGACCTCTGCCAG 60.325 60.000 0.00 0.00 42.81 4.85
427 430 0.260230 TCCCTAGACCTCTGCCAGAG 59.740 60.000 14.99 14.99 41.96 3.35
467 470 6.019748 TCTCCAAGTCTCATCTAGTTCCTTT 58.980 40.000 0.00 0.00 0.00 3.11
502 505 5.591472 TCATCCTATCAAAATCAGCAACAGG 59.409 40.000 0.00 0.00 0.00 4.00
503 506 5.178096 TCCTATCAAAATCAGCAACAGGA 57.822 39.130 0.00 0.00 0.00 3.86
506 509 5.649395 CCTATCAAAATCAGCAACAGGAAGA 59.351 40.000 0.00 0.00 0.00 2.87
509 512 4.828939 TCAAAATCAGCAACAGGAAGATGT 59.171 37.500 0.00 0.00 33.96 3.06
521 524 6.310764 ACAGGAAGATGTTGAGATTCAGAT 57.689 37.500 0.00 0.00 0.00 2.90
533 536 8.534496 TGTTGAGATTCAGATAAGACATCAAGA 58.466 33.333 0.00 0.00 0.00 3.02
586 590 1.173043 TTTTAATGGCTGCGTCCCTG 58.827 50.000 0.00 0.00 0.00 4.45
592 596 0.676466 TGGCTGCGTCCCTGTTAATG 60.676 55.000 0.00 0.00 0.00 1.90
593 597 0.676782 GGCTGCGTCCCTGTTAATGT 60.677 55.000 0.00 0.00 0.00 2.71
600 604 2.290071 CGTCCCTGTTAATGTTCCACCT 60.290 50.000 0.00 0.00 0.00 4.00
601 605 3.763057 GTCCCTGTTAATGTTCCACCTT 58.237 45.455 0.00 0.00 0.00 3.50
632 640 3.366396 TGAGAACCCTAGTCTTAGCCAG 58.634 50.000 0.00 0.00 0.00 4.85
634 642 1.831736 GAACCCTAGTCTTAGCCAGCA 59.168 52.381 0.00 0.00 0.00 4.41
635 643 1.490574 ACCCTAGTCTTAGCCAGCAG 58.509 55.000 0.00 0.00 0.00 4.24
636 644 1.273324 ACCCTAGTCTTAGCCAGCAGT 60.273 52.381 0.00 0.00 0.00 4.40
637 645 1.834263 CCCTAGTCTTAGCCAGCAGTT 59.166 52.381 0.00 0.00 0.00 3.16
638 646 3.031736 CCCTAGTCTTAGCCAGCAGTTA 58.968 50.000 0.00 0.00 0.00 2.24
651 660 2.903798 AGCAGTTATCAGCTGAAGAGC 58.096 47.619 22.50 19.07 46.64 4.09
666 675 3.295973 GAAGAGCTAGAGGAGGACACAT 58.704 50.000 0.00 0.00 0.00 3.21
671 680 4.615513 AGCTAGAGGAGGACACATAGTTT 58.384 43.478 0.00 0.00 0.00 2.66
672 681 5.026790 AGCTAGAGGAGGACACATAGTTTT 58.973 41.667 0.00 0.00 0.00 2.43
673 682 5.485708 AGCTAGAGGAGGACACATAGTTTTT 59.514 40.000 0.00 0.00 0.00 1.94
674 683 6.668283 AGCTAGAGGAGGACACATAGTTTTTA 59.332 38.462 0.00 0.00 0.00 1.52
675 684 6.757478 GCTAGAGGAGGACACATAGTTTTTAC 59.243 42.308 0.00 0.00 0.00 2.01
676 685 6.936968 AGAGGAGGACACATAGTTTTTACT 57.063 37.500 0.00 0.00 0.00 2.24
677 686 7.317722 AGAGGAGGACACATAGTTTTTACTT 57.682 36.000 0.00 0.00 0.00 2.24
678 687 7.162082 AGAGGAGGACACATAGTTTTTACTTG 58.838 38.462 0.00 0.00 0.00 3.16
679 688 6.238648 AGGAGGACACATAGTTTTTACTTGG 58.761 40.000 0.00 0.00 0.00 3.61
680 689 6.002082 GGAGGACACATAGTTTTTACTTGGT 58.998 40.000 0.00 0.00 0.00 3.67
681 690 6.148976 GGAGGACACATAGTTTTTACTTGGTC 59.851 42.308 0.00 0.00 0.00 4.02
682 691 6.838382 AGGACACATAGTTTTTACTTGGTCT 58.162 36.000 0.00 0.00 0.00 3.85
683 692 7.970102 AGGACACATAGTTTTTACTTGGTCTA 58.030 34.615 0.00 0.00 0.00 2.59
684 693 8.434392 AGGACACATAGTTTTTACTTGGTCTAA 58.566 33.333 0.00 0.00 0.00 2.10
685 694 9.227777 GGACACATAGTTTTTACTTGGTCTAAT 57.772 33.333 0.00 0.00 0.00 1.73
713 722 9.769677 ATATATTAGGTAGTCTATGCCACTTCA 57.230 33.333 0.00 0.00 35.79 3.02
714 723 6.808321 ATTAGGTAGTCTATGCCACTTCAA 57.192 37.500 0.00 0.00 35.79 2.69
715 724 6.808321 TTAGGTAGTCTATGCCACTTCAAT 57.192 37.500 0.00 0.00 35.79 2.57
716 725 5.700402 AGGTAGTCTATGCCACTTCAATT 57.300 39.130 0.00 0.00 35.79 2.32
717 726 6.067217 AGGTAGTCTATGCCACTTCAATTT 57.933 37.500 0.00 0.00 35.79 1.82
718 727 6.485171 AGGTAGTCTATGCCACTTCAATTTT 58.515 36.000 0.00 0.00 35.79 1.82
719 728 7.630082 AGGTAGTCTATGCCACTTCAATTTTA 58.370 34.615 0.00 0.00 35.79 1.52
720 729 8.275040 AGGTAGTCTATGCCACTTCAATTTTAT 58.725 33.333 0.00 0.00 35.79 1.40
721 730 8.345565 GGTAGTCTATGCCACTTCAATTTTATG 58.654 37.037 0.00 0.00 32.98 1.90
722 731 7.944729 AGTCTATGCCACTTCAATTTTATGT 57.055 32.000 0.00 0.00 0.00 2.29
723 732 8.353423 AGTCTATGCCACTTCAATTTTATGTT 57.647 30.769 0.00 0.00 0.00 2.71
724 733 8.806146 AGTCTATGCCACTTCAATTTTATGTTT 58.194 29.630 0.00 0.00 0.00 2.83
725 734 9.076596 GTCTATGCCACTTCAATTTTATGTTTC 57.923 33.333 0.00 0.00 0.00 2.78
726 735 8.801299 TCTATGCCACTTCAATTTTATGTTTCA 58.199 29.630 0.00 0.00 0.00 2.69
727 736 7.656707 ATGCCACTTCAATTTTATGTTTCAC 57.343 32.000 0.00 0.00 0.00 3.18
728 737 5.988561 TGCCACTTCAATTTTATGTTTCACC 59.011 36.000 0.00 0.00 0.00 4.02
729 738 5.988561 GCCACTTCAATTTTATGTTTCACCA 59.011 36.000 0.00 0.00 0.00 4.17
730 739 6.650390 GCCACTTCAATTTTATGTTTCACCAT 59.350 34.615 0.00 0.00 0.00 3.55
731 740 7.148590 GCCACTTCAATTTTATGTTTCACCATC 60.149 37.037 0.00 0.00 0.00 3.51
732 741 8.090214 CCACTTCAATTTTATGTTTCACCATCT 58.910 33.333 0.00 0.00 0.00 2.90
733 742 9.132521 CACTTCAATTTTATGTTTCACCATCTC 57.867 33.333 0.00 0.00 0.00 2.75
734 743 8.023128 ACTTCAATTTTATGTTTCACCATCTCG 58.977 33.333 0.00 0.00 0.00 4.04
735 744 7.447374 TCAATTTTATGTTTCACCATCTCGT 57.553 32.000 0.00 0.00 0.00 4.18
736 745 8.554835 TCAATTTTATGTTTCACCATCTCGTA 57.445 30.769 0.00 0.00 0.00 3.43
737 746 9.004717 TCAATTTTATGTTTCACCATCTCGTAA 57.995 29.630 0.00 0.00 0.00 3.18
738 747 9.619316 CAATTTTATGTTTCACCATCTCGTAAA 57.381 29.630 0.00 0.00 0.00 2.01
783 792 9.226345 CTATTTTTATGAAAGAAATGGACGAGC 57.774 33.333 0.00 0.00 0.00 5.03
784 793 6.567687 TTTTATGAAAGAAATGGACGAGCA 57.432 33.333 0.00 0.00 0.00 4.26
785 794 5.545658 TTATGAAAGAAATGGACGAGCAC 57.454 39.130 0.00 0.00 0.00 4.40
786 795 1.798223 TGAAAGAAATGGACGAGCACG 59.202 47.619 0.76 0.76 45.75 5.34
787 796 2.066262 GAAAGAAATGGACGAGCACGA 58.934 47.619 11.40 0.00 42.66 4.35
788 797 1.429463 AAGAAATGGACGAGCACGAC 58.571 50.000 11.40 3.60 42.66 4.34
789 798 0.317160 AGAAATGGACGAGCACGACA 59.683 50.000 11.40 9.27 42.66 4.35
790 799 1.144969 GAAATGGACGAGCACGACAA 58.855 50.000 11.40 0.00 42.66 3.18
791 800 0.865769 AAATGGACGAGCACGACAAC 59.134 50.000 11.40 0.00 42.66 3.32
792 801 1.282248 AATGGACGAGCACGACAACG 61.282 55.000 11.40 0.00 42.66 4.10
793 802 3.764049 GGACGAGCACGACAACGC 61.764 66.667 11.40 0.00 43.96 4.84
794 803 4.104633 GACGAGCACGACAACGCG 62.105 66.667 11.40 3.53 43.96 6.01
800 809 4.717927 CACGACAACGCGCGCAAT 62.718 61.111 32.58 16.29 43.96 3.56
801 810 4.424430 ACGACAACGCGCGCAATC 62.424 61.111 32.58 22.54 43.96 2.67
802 811 4.422937 CGACAACGCGCGCAATCA 62.423 61.111 32.58 0.00 0.00 2.57
803 812 2.127421 GACAACGCGCGCAATCAA 60.127 55.556 32.58 0.00 0.00 2.57
804 813 1.511887 GACAACGCGCGCAATCAAT 60.512 52.632 32.58 10.80 0.00 2.57
805 814 0.247497 GACAACGCGCGCAATCAATA 60.247 50.000 32.58 0.00 0.00 1.90
806 815 0.167033 ACAACGCGCGCAATCAATAA 59.833 45.000 32.58 0.00 0.00 1.40
807 816 1.202132 ACAACGCGCGCAATCAATAAT 60.202 42.857 32.58 2.28 0.00 1.28
808 817 1.185549 CAACGCGCGCAATCAATAATG 59.814 47.619 32.58 12.91 0.00 1.90
809 818 0.655208 ACGCGCGCAATCAATAATGA 59.345 45.000 32.58 0.00 40.57 2.57
811 820 1.900603 CGCGCGCAATCAATAATGATC 59.099 47.619 32.61 0.00 45.60 2.92
812 821 2.411935 CGCGCGCAATCAATAATGATCT 60.412 45.455 32.61 0.00 45.60 2.75
813 822 3.181531 CGCGCGCAATCAATAATGATCTA 60.182 43.478 32.61 0.00 45.60 1.98
814 823 4.329489 GCGCGCAATCAATAATGATCTAG 58.671 43.478 29.10 0.00 45.60 2.43
815 824 4.143030 GCGCGCAATCAATAATGATCTAGT 60.143 41.667 29.10 0.00 45.60 2.57
816 825 5.615544 GCGCGCAATCAATAATGATCTAGTT 60.616 40.000 29.10 0.00 45.60 2.24
817 826 6.365839 CGCGCAATCAATAATGATCTAGTTT 58.634 36.000 8.75 0.00 45.60 2.66
818 827 6.852853 CGCGCAATCAATAATGATCTAGTTTT 59.147 34.615 8.75 0.00 45.60 2.43
819 828 7.149240 CGCGCAATCAATAATGATCTAGTTTTG 60.149 37.037 8.75 0.00 45.60 2.44
820 829 7.857389 GCGCAATCAATAATGATCTAGTTTTGA 59.143 33.333 0.30 0.00 45.60 2.69
821 830 9.162793 CGCAATCAATAATGATCTAGTTTTGAC 57.837 33.333 0.00 0.00 45.60 3.18
826 835 9.383519 TCAATAATGATCTAGTTTTGACACTCC 57.616 33.333 0.00 0.00 0.00 3.85
827 836 9.388506 CAATAATGATCTAGTTTTGACACTCCT 57.611 33.333 0.00 0.00 0.00 3.69
828 837 9.965902 AATAATGATCTAGTTTTGACACTCCTT 57.034 29.630 0.00 0.00 0.00 3.36
831 840 9.442047 AATGATCTAGTTTTGACACTCCTTAAG 57.558 33.333 0.00 0.00 0.00 1.85
832 841 6.874134 TGATCTAGTTTTGACACTCCTTAAGC 59.126 38.462 0.00 0.00 0.00 3.09
833 842 6.169557 TCTAGTTTTGACACTCCTTAAGCA 57.830 37.500 0.00 0.00 0.00 3.91
834 843 5.989777 TCTAGTTTTGACACTCCTTAAGCAC 59.010 40.000 0.00 0.00 0.00 4.40
835 844 4.523083 AGTTTTGACACTCCTTAAGCACA 58.477 39.130 0.00 0.00 0.00 4.57
836 845 4.947388 AGTTTTGACACTCCTTAAGCACAA 59.053 37.500 0.00 0.00 0.00 3.33
837 846 4.893424 TTTGACACTCCTTAAGCACAAC 57.107 40.909 0.00 0.00 0.00 3.32
838 847 3.838244 TGACACTCCTTAAGCACAACT 57.162 42.857 0.00 0.00 0.00 3.16
839 848 4.948341 TGACACTCCTTAAGCACAACTA 57.052 40.909 0.00 0.00 0.00 2.24
840 849 4.628074 TGACACTCCTTAAGCACAACTAC 58.372 43.478 0.00 0.00 0.00 2.73
841 850 4.344102 TGACACTCCTTAAGCACAACTACT 59.656 41.667 0.00 0.00 0.00 2.57
842 851 4.884247 ACACTCCTTAAGCACAACTACTC 58.116 43.478 0.00 0.00 0.00 2.59
843 852 3.921021 CACTCCTTAAGCACAACTACTCG 59.079 47.826 0.00 0.00 0.00 4.18
844 853 3.825014 ACTCCTTAAGCACAACTACTCGA 59.175 43.478 0.00 0.00 0.00 4.04
845 854 4.082679 ACTCCTTAAGCACAACTACTCGAG 60.083 45.833 11.84 11.84 0.00 4.04
846 855 3.192844 TCCTTAAGCACAACTACTCGAGG 59.807 47.826 18.41 1.82 0.00 4.63
847 856 3.056749 CCTTAAGCACAACTACTCGAGGT 60.057 47.826 18.41 2.55 0.00 3.85
848 857 4.157289 CCTTAAGCACAACTACTCGAGGTA 59.843 45.833 18.41 6.01 0.00 3.08
872 881 1.379977 TGCTGGCTAGTCCGCTAGT 60.380 57.895 12.15 0.00 44.93 2.57
892 901 3.568853 AGTACAAGATACCGATTCCTCCG 59.431 47.826 0.00 0.00 0.00 4.63
899 908 0.613777 ACCGATTCCTCCGCTTCTTT 59.386 50.000 0.00 0.00 0.00 2.52
907 916 0.716108 CTCCGCTTCTTTGCTACACG 59.284 55.000 0.00 0.00 0.00 4.49
909 918 0.865769 CCGCTTCTTTGCTACACGTT 59.134 50.000 0.00 0.00 0.00 3.99
910 919 1.136336 CCGCTTCTTTGCTACACGTTC 60.136 52.381 0.00 0.00 0.00 3.95
911 920 1.525197 CGCTTCTTTGCTACACGTTCA 59.475 47.619 0.00 0.00 0.00 3.18
912 921 2.157668 CGCTTCTTTGCTACACGTTCAT 59.842 45.455 0.00 0.00 0.00 2.57
913 922 3.722082 CGCTTCTTTGCTACACGTTCATC 60.722 47.826 0.00 0.00 0.00 2.92
914 923 3.433615 GCTTCTTTGCTACACGTTCATCT 59.566 43.478 0.00 0.00 0.00 2.90
915 924 4.434857 GCTTCTTTGCTACACGTTCATCTC 60.435 45.833 0.00 0.00 0.00 2.75
916 925 3.585862 TCTTTGCTACACGTTCATCTCC 58.414 45.455 0.00 0.00 0.00 3.71
917 926 3.006430 TCTTTGCTACACGTTCATCTCCA 59.994 43.478 0.00 0.00 0.00 3.86
918 927 3.394674 TTGCTACACGTTCATCTCCAA 57.605 42.857 0.00 0.00 0.00 3.53
919 928 3.610040 TGCTACACGTTCATCTCCAAT 57.390 42.857 0.00 0.00 0.00 3.16
920 929 3.521560 TGCTACACGTTCATCTCCAATC 58.478 45.455 0.00 0.00 0.00 2.67
921 930 2.866762 GCTACACGTTCATCTCCAATCC 59.133 50.000 0.00 0.00 0.00 3.01
922 931 2.403252 ACACGTTCATCTCCAATCCC 57.597 50.000 0.00 0.00 0.00 3.85
923 932 1.909302 ACACGTTCATCTCCAATCCCT 59.091 47.619 0.00 0.00 0.00 4.20
924 933 2.283298 CACGTTCATCTCCAATCCCTG 58.717 52.381 0.00 0.00 0.00 4.45
936 945 1.645402 AATCCCTGGCCGCCATTACT 61.645 55.000 13.86 0.00 30.82 2.24
937 946 2.056906 ATCCCTGGCCGCCATTACTC 62.057 60.000 13.86 0.00 30.82 2.59
942 951 0.958382 TGGCCGCCATTACTCACAAC 60.958 55.000 8.43 0.00 0.00 3.32
952 961 4.022329 CCATTACTCACAACCAAAACCCTC 60.022 45.833 0.00 0.00 0.00 4.30
954 963 2.654863 ACTCACAACCAAAACCCTCAG 58.345 47.619 0.00 0.00 0.00 3.35
955 964 2.241176 ACTCACAACCAAAACCCTCAGA 59.759 45.455 0.00 0.00 0.00 3.27
956 965 2.618709 CTCACAACCAAAACCCTCAGAC 59.381 50.000 0.00 0.00 0.00 3.51
961 970 2.127708 ACCAAAACCCTCAGACAGAGT 58.872 47.619 0.00 0.00 43.12 3.24
972 981 1.136984 GACAGAGTACTCGTGCCGG 59.863 63.158 20.11 0.00 34.09 6.13
988 997 2.475466 CGGGCTGTCCATGCATCAC 61.475 63.158 0.00 0.00 34.36 3.06
1006 1015 1.210967 CACTCCCCGGCCTTGTATTTA 59.789 52.381 0.00 0.00 0.00 1.40
1014 1023 3.307480 CCGGCCTTGTATTTATAGGGAGG 60.307 52.174 0.00 0.00 0.00 4.30
1114 1126 1.066787 GCTCTGGTGGTCCTTGTACTC 60.067 57.143 0.00 0.00 34.23 2.59
1120 1132 1.255667 TGGTCCTTGTACTCCTCGCC 61.256 60.000 0.00 0.00 0.00 5.54
1192 1204 4.758251 CTGCCGCACCCATCGTCA 62.758 66.667 0.00 0.00 0.00 4.35
1196 1208 2.186644 CGCACCCATCGTCATCCA 59.813 61.111 0.00 0.00 0.00 3.41
1199 1211 0.464036 GCACCCATCGTCATCCACTA 59.536 55.000 0.00 0.00 0.00 2.74
1207 2079 0.532573 CGTCATCCACTACTGCTGGT 59.467 55.000 0.00 0.00 0.00 4.00
1247 2119 1.239347 CATGGATGGAGCATCAGCAG 58.761 55.000 0.00 0.00 42.13 4.24
1264 2136 0.108186 CAGCCACTACTCATCGCCAA 60.108 55.000 0.00 0.00 0.00 4.52
1265 2137 0.108138 AGCCACTACTCATCGCCAAC 60.108 55.000 0.00 0.00 0.00 3.77
1266 2138 0.108138 GCCACTACTCATCGCCAACT 60.108 55.000 0.00 0.00 0.00 3.16
1279 2151 1.802880 CGCCAACTCAGGATCGGTAAG 60.803 57.143 0.00 0.00 0.00 2.34
1281 2153 2.108168 CCAACTCAGGATCGGTAAGGA 58.892 52.381 0.00 0.00 0.00 3.36
1303 2175 5.189145 GGACCTCAACTTACTAATCCTCCAA 59.811 44.000 0.00 0.00 0.00 3.53
1312 2184 7.175104 ACTTACTAATCCTCCAATTTCTTGCA 58.825 34.615 0.00 0.00 0.00 4.08
1313 2185 7.836183 ACTTACTAATCCTCCAATTTCTTGCAT 59.164 33.333 0.00 0.00 0.00 3.96
1314 2186 9.342308 CTTACTAATCCTCCAATTTCTTGCATA 57.658 33.333 0.00 0.00 0.00 3.14
1315 2187 9.866655 TTACTAATCCTCCAATTTCTTGCATAT 57.133 29.630 0.00 0.00 0.00 1.78
1316 2188 8.773033 ACTAATCCTCCAATTTCTTGCATATT 57.227 30.769 0.00 0.00 0.00 1.28
1317 2189 8.636213 ACTAATCCTCCAATTTCTTGCATATTG 58.364 33.333 0.00 0.00 0.00 1.90
1318 2190 7.427989 AATCCTCCAATTTCTTGCATATTGT 57.572 32.000 0.00 0.00 0.00 2.71
1319 2191 8.537728 AATCCTCCAATTTCTTGCATATTGTA 57.462 30.769 0.00 0.00 0.00 2.41
1320 2192 7.572523 TCCTCCAATTTCTTGCATATTGTAG 57.427 36.000 0.00 0.00 0.00 2.74
1321 2193 7.345691 TCCTCCAATTTCTTGCATATTGTAGA 58.654 34.615 0.00 0.00 0.00 2.59
1322 2194 8.000709 TCCTCCAATTTCTTGCATATTGTAGAT 58.999 33.333 0.00 0.00 0.00 1.98
1323 2195 8.295288 CCTCCAATTTCTTGCATATTGTAGATC 58.705 37.037 0.00 0.00 0.00 2.75
1324 2196 8.750515 TCCAATTTCTTGCATATTGTAGATCA 57.249 30.769 0.00 0.00 0.00 2.92
1325 2197 9.358406 TCCAATTTCTTGCATATTGTAGATCAT 57.642 29.630 0.00 0.00 0.00 2.45
1330 2202 9.927668 TTTCTTGCATATTGTAGATCATATCGA 57.072 29.630 0.00 0.00 0.00 3.59
1332 2204 9.525409 TCTTGCATATTGTAGATCATATCGATG 57.475 33.333 8.54 0.00 33.17 3.84
1333 2205 9.310716 CTTGCATATTGTAGATCATATCGATGT 57.689 33.333 8.54 0.00 33.17 3.06
1334 2206 8.638685 TGCATATTGTAGATCATATCGATGTG 57.361 34.615 15.39 15.39 33.17 3.21
1335 2207 7.707893 TGCATATTGTAGATCATATCGATGTGG 59.292 37.037 20.34 4.58 33.17 4.17
1336 2208 7.708322 GCATATTGTAGATCATATCGATGTGGT 59.292 37.037 20.34 14.79 33.17 4.16
1340 2212 6.564328 TGTAGATCATATCGATGTGGTATGC 58.436 40.000 20.34 15.25 33.17 3.14
1341 2213 5.929058 AGATCATATCGATGTGGTATGCT 57.071 39.130 20.34 5.89 33.17 3.79
1342 2214 7.556275 TGTAGATCATATCGATGTGGTATGCTA 59.444 37.037 20.34 9.62 33.17 3.49
1343 2215 7.410120 AGATCATATCGATGTGGTATGCTAA 57.590 36.000 20.34 0.80 33.17 3.09
1344 2216 8.016301 AGATCATATCGATGTGGTATGCTAAT 57.984 34.615 20.34 5.52 33.17 1.73
1345 2217 8.481314 AGATCATATCGATGTGGTATGCTAATT 58.519 33.333 20.34 0.00 33.17 1.40
1346 2218 8.654230 ATCATATCGATGTGGTATGCTAATTC 57.346 34.615 20.34 0.00 34.41 2.17
1347 2219 7.840931 TCATATCGATGTGGTATGCTAATTCT 58.159 34.615 20.34 0.00 34.41 2.40
1348 2220 8.314021 TCATATCGATGTGGTATGCTAATTCTT 58.686 33.333 20.34 0.00 34.41 2.52
1349 2221 9.586435 CATATCGATGTGGTATGCTAATTCTTA 57.414 33.333 13.89 0.00 0.00 2.10
1352 2224 8.902540 TCGATGTGGTATGCTAATTCTTATTT 57.097 30.769 0.00 0.00 0.00 1.40
1353 2225 9.990360 TCGATGTGGTATGCTAATTCTTATTTA 57.010 29.630 0.00 0.00 0.00 1.40
1371 2243 8.225107 TCTTATTTAATTATGTATGCGGCGAAC 58.775 33.333 12.98 5.73 0.00 3.95
1379 2252 1.400494 GTATGCGGCGAACTGGAAAAT 59.600 47.619 12.98 0.00 0.00 1.82
1389 2264 5.163652 GGCGAACTGGAAAATAATTAGCTGT 60.164 40.000 0.00 0.00 0.00 4.40
1390 2265 5.739161 GCGAACTGGAAAATAATTAGCTGTG 59.261 40.000 0.00 0.00 0.00 3.66
1449 2327 6.318112 AGAAGGTGAGGAAAAATCCATTTCT 58.682 36.000 0.00 0.00 38.92 2.52
1465 2343 2.031012 CTGTGAACAGCCTGCCGA 59.969 61.111 0.00 0.00 37.15 5.54
1491 2369 0.623723 ACATGAGGGTGCCGGTTATT 59.376 50.000 1.90 0.00 0.00 1.40
1492 2370 1.841277 ACATGAGGGTGCCGGTTATTA 59.159 47.619 1.90 0.00 0.00 0.98
1493 2371 2.441750 ACATGAGGGTGCCGGTTATTAT 59.558 45.455 1.90 0.00 0.00 1.28
1494 2372 2.922740 TGAGGGTGCCGGTTATTATC 57.077 50.000 1.90 0.00 0.00 1.75
1524 2409 2.116238 ACCTAATCCCATGCAGTACGT 58.884 47.619 0.00 0.00 0.00 3.57
1525 2410 3.069016 CACCTAATCCCATGCAGTACGTA 59.931 47.826 0.00 0.00 0.00 3.57
1566 2451 2.798283 TCGATCGACCTCAACAACAAAC 59.202 45.455 15.15 0.00 0.00 2.93
1569 2454 3.961477 TCGACCTCAACAACAAACATG 57.039 42.857 0.00 0.00 0.00 3.21
1628 2513 7.979444 AAAAATGAGAAGAATAAGTCGTGGA 57.021 32.000 0.00 0.00 0.00 4.02
1629 2514 7.602517 AAAATGAGAAGAATAAGTCGTGGAG 57.397 36.000 0.00 0.00 0.00 3.86
1630 2515 5.923733 ATGAGAAGAATAAGTCGTGGAGT 57.076 39.130 0.00 0.00 0.00 3.85
1631 2516 7.406031 AATGAGAAGAATAAGTCGTGGAGTA 57.594 36.000 0.00 0.00 0.00 2.59
1632 2517 6.829229 TGAGAAGAATAAGTCGTGGAGTAA 57.171 37.500 0.00 0.00 0.00 2.24
1633 2518 6.853720 TGAGAAGAATAAGTCGTGGAGTAAG 58.146 40.000 0.00 0.00 0.00 2.34
1634 2519 6.433404 TGAGAAGAATAAGTCGTGGAGTAAGT 59.567 38.462 0.00 0.00 0.00 2.24
1635 2520 7.039923 TGAGAAGAATAAGTCGTGGAGTAAGTT 60.040 37.037 0.00 0.00 0.00 2.66
1636 2521 8.345724 AGAAGAATAAGTCGTGGAGTAAGTTA 57.654 34.615 0.00 0.00 0.00 2.24
1637 2522 8.460428 AGAAGAATAAGTCGTGGAGTAAGTTAG 58.540 37.037 0.00 0.00 0.00 2.34
1638 2523 7.700022 AGAATAAGTCGTGGAGTAAGTTAGT 57.300 36.000 0.00 0.00 0.00 2.24
1639 2524 8.120140 AGAATAAGTCGTGGAGTAAGTTAGTT 57.880 34.615 0.00 0.00 0.00 2.24
1640 2525 8.027771 AGAATAAGTCGTGGAGTAAGTTAGTTG 58.972 37.037 0.00 0.00 0.00 3.16
1641 2526 4.516365 AGTCGTGGAGTAAGTTAGTTGG 57.484 45.455 0.00 0.00 0.00 3.77
1642 2527 2.991866 GTCGTGGAGTAAGTTAGTTGGC 59.008 50.000 0.00 0.00 0.00 4.52
1668 2553 1.278985 TGCTGTGTTACCATGGAGAGG 59.721 52.381 21.47 2.76 0.00 3.69
1696 4780 6.128254 GGAAGTTGTAAGTTCTAAGTGATGGC 60.128 42.308 10.91 0.00 38.21 4.40
1699 4783 5.086104 TGTAAGTTCTAAGTGATGGCTCC 57.914 43.478 0.00 0.00 0.00 4.70
1727 4811 7.845066 ATTACGAATGTACTCTCCCTTTTTC 57.155 36.000 0.00 0.00 0.00 2.29
1729 4813 5.238583 ACGAATGTACTCTCCCTTTTTCTG 58.761 41.667 0.00 0.00 0.00 3.02
1730 4814 5.011738 ACGAATGTACTCTCCCTTTTTCTGA 59.988 40.000 0.00 0.00 0.00 3.27
1731 4815 5.932303 CGAATGTACTCTCCCTTTTTCTGAA 59.068 40.000 0.00 0.00 0.00 3.02
1732 4816 6.426937 CGAATGTACTCTCCCTTTTTCTGAAA 59.573 38.462 0.00 0.00 0.00 2.69
1733 4817 7.041372 CGAATGTACTCTCCCTTTTTCTGAAAA 60.041 37.037 11.33 11.33 33.86 2.29
1734 4818 8.533569 AATGTACTCTCCCTTTTTCTGAAAAA 57.466 30.769 22.74 22.74 37.99 1.94
1735 4819 7.329588 TGTACTCTCCCTTTTTCTGAAAAAC 57.670 36.000 20.98 11.40 35.57 2.43
1774 5348 1.990060 ACATGGGACGGGTCTCCAG 60.990 63.158 12.43 8.51 34.83 3.86
1778 5399 1.689582 GGGACGGGTCTCCAGGATT 60.690 63.158 0.00 0.00 30.97 3.01
1809 5430 8.691661 TCTTTCTTTACTTTAGCATTTCCTGT 57.308 30.769 0.00 0.00 0.00 4.00
1907 5529 5.827568 TTTTTACGAGATACACCAACGTC 57.172 39.130 0.00 0.00 38.18 4.34
1908 5530 4.502171 TTTACGAGATACACCAACGTCA 57.498 40.909 0.00 0.00 38.18 4.35
1909 5531 2.342910 ACGAGATACACCAACGTCAC 57.657 50.000 0.00 0.00 31.69 3.67
1939 5562 8.991243 ACACATGAATATTTCCTCAAAACATG 57.009 30.769 0.00 0.00 38.59 3.21
2120 5746 6.756074 TGTATGTGAAACCTTTCTTTTTGCAG 59.244 34.615 0.00 0.00 38.02 4.41
2135 5761 6.591062 TCTTTTTGCAGCACATGAATATTTCC 59.409 34.615 0.00 0.00 0.00 3.13
2244 5872 2.054232 TTTCGTGTTGTTTGGCCCTA 57.946 45.000 0.00 0.00 0.00 3.53
2252 5880 0.035820 TGTTTGGCCCTACGATGTCC 60.036 55.000 0.00 0.00 0.00 4.02
2253 5881 1.087771 GTTTGGCCCTACGATGTCCG 61.088 60.000 0.00 0.00 45.44 4.79
2276 5904 9.238368 TCCGTTTAATGTAGGATTTGAGATTTT 57.762 29.630 0.00 0.00 0.00 1.82
2285 5913 8.950210 TGTAGGATTTGAGATTTTGTGAAGATC 58.050 33.333 0.00 0.00 0.00 2.75
2293 5921 4.877823 AGATTTTGTGAAGATCGCTGCATA 59.122 37.500 0.00 0.00 30.70 3.14
2294 5922 5.355071 AGATTTTGTGAAGATCGCTGCATAA 59.645 36.000 0.00 0.00 30.70 1.90
2302 5930 4.063998 AGATCGCTGCATAAATCAGTCA 57.936 40.909 0.00 0.00 34.21 3.41
2341 5970 9.706691 CCCCTTTAAGAAGAAAAATAAAACCTC 57.293 33.333 0.00 0.00 34.71 3.85
2363 5992 6.818644 CCTCTGTAAGAAATAAAGCACTGCTA 59.181 38.462 3.33 0.00 46.34 3.49
2369 5998 2.338577 ATAAAGCACTGCTAGCCTGG 57.661 50.000 13.29 5.09 38.25 4.45
2374 6003 0.755686 GCACTGCTAGCCTGGTCTAT 59.244 55.000 13.29 0.00 0.00 1.98
2384 6013 7.893658 TGCTAGCCTGGTCTATAATAAGTTAC 58.106 38.462 13.29 0.00 0.00 2.50
2431 6065 2.102252 AGAAGCCCTCGATGATTCAGAC 59.898 50.000 13.42 0.00 0.00 3.51
2436 6070 3.068873 GCCCTCGATGATTCAGACTAACT 59.931 47.826 0.00 0.00 0.00 2.24
2437 6071 4.615949 CCCTCGATGATTCAGACTAACTG 58.384 47.826 0.00 0.00 46.97 3.16
2438 6072 4.098654 CCCTCGATGATTCAGACTAACTGT 59.901 45.833 0.00 0.00 45.86 3.55
2439 6073 5.277825 CCTCGATGATTCAGACTAACTGTC 58.722 45.833 0.00 0.00 45.86 3.51
2450 6084 4.448363 GACTAACTGTCGGTGTCAAAAC 57.552 45.455 0.00 0.00 35.81 2.43
2451 6085 3.200483 ACTAACTGTCGGTGTCAAAACC 58.800 45.455 0.00 0.00 36.82 3.27
2457 6091 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
2458 6092 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
2459 6093 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
2460 6094 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
2461 6095 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
2462 6096 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
2467 6101 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
2468 6102 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
2469 6103 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
2470 6104 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
2471 6105 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
2472 6106 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
2473 6107 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
2474 6108 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
2475 6109 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
2484 6118 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
2486 6120 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
2487 6121 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
2488 6122 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
2489 6123 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
2490 6124 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
2491 6125 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
2492 6126 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
2493 6127 2.152699 CGAACTGTGCGTCTAGGCG 61.153 63.158 13.55 13.55 35.06 5.52
2494 6128 1.805945 GAACTGTGCGTCTAGGCGG 60.806 63.158 19.86 3.85 35.06 6.13
2495 6129 2.209064 GAACTGTGCGTCTAGGCGGA 62.209 60.000 19.86 14.02 35.06 5.54
2496 6130 1.605058 AACTGTGCGTCTAGGCGGAT 61.605 55.000 19.86 0.00 34.24 4.18
2497 6131 1.589993 CTGTGCGTCTAGGCGGATG 60.590 63.158 19.86 9.25 34.24 3.51
2498 6132 2.279517 GTGCGTCTAGGCGGATGG 60.280 66.667 19.86 0.00 34.24 3.51
2499 6133 2.758327 TGCGTCTAGGCGGATGGT 60.758 61.111 19.86 0.00 35.06 3.55
2500 6134 1.454295 TGCGTCTAGGCGGATGGTA 60.454 57.895 19.86 0.00 35.06 3.25
2501 6135 1.038681 TGCGTCTAGGCGGATGGTAA 61.039 55.000 19.86 0.00 35.06 2.85
2502 6136 0.596859 GCGTCTAGGCGGATGGTAAC 60.597 60.000 19.86 0.00 0.00 2.50
2515 6149 2.409064 TGGTAACAGGAGACAAGGGA 57.591 50.000 0.00 0.00 46.17 4.20
2516 6150 1.975680 TGGTAACAGGAGACAAGGGAC 59.024 52.381 0.00 0.00 46.17 4.46
2517 6151 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
2518 6152 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
2519 6153 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
2520 6154 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
2521 6155 0.898320 CAGGAGACAAGGGACACGAT 59.102 55.000 0.00 0.00 0.00 3.73
2522 6156 0.898320 AGGAGACAAGGGACACGATG 59.102 55.000 0.00 0.00 0.00 3.84
2523 6157 0.608640 GGAGACAAGGGACACGATGT 59.391 55.000 0.00 0.00 0.00 3.06
2524 6158 1.002087 GGAGACAAGGGACACGATGTT 59.998 52.381 0.00 0.00 0.00 2.71
2525 6159 2.550208 GGAGACAAGGGACACGATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
2526 6160 3.139077 GAGACAAGGGACACGATGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
2527 6161 3.551846 AGACAAGGGACACGATGTTTTT 58.448 40.909 0.00 0.00 0.00 1.94
2528 6162 3.564225 AGACAAGGGACACGATGTTTTTC 59.436 43.478 0.00 0.00 0.00 2.29
2529 6163 2.621526 ACAAGGGACACGATGTTTTTCC 59.378 45.455 0.00 0.00 0.00 3.13
2530 6164 1.905637 AGGGACACGATGTTTTTCCC 58.094 50.000 0.00 0.00 32.49 3.97
2531 6165 0.885879 GGGACACGATGTTTTTCCCC 59.114 55.000 0.00 0.00 27.57 4.81
2532 6166 1.611519 GGACACGATGTTTTTCCCCA 58.388 50.000 0.00 0.00 0.00 4.96
2533 6167 1.539827 GGACACGATGTTTTTCCCCAG 59.460 52.381 0.00 0.00 0.00 4.45
2534 6168 1.539827 GACACGATGTTTTTCCCCAGG 59.460 52.381 0.00 0.00 0.00 4.45
2535 6169 1.133606 ACACGATGTTTTTCCCCAGGT 60.134 47.619 0.00 0.00 0.00 4.00
2536 6170 1.960689 CACGATGTTTTTCCCCAGGTT 59.039 47.619 0.00 0.00 0.00 3.50
2537 6171 2.030274 CACGATGTTTTTCCCCAGGTTC 60.030 50.000 0.00 0.00 0.00 3.62
2538 6172 1.199097 CGATGTTTTTCCCCAGGTTCG 59.801 52.381 0.00 0.00 0.00 3.95
2539 6173 1.544246 GATGTTTTTCCCCAGGTTCGG 59.456 52.381 0.00 0.00 0.00 4.30
2540 6174 0.468400 TGTTTTTCCCCAGGTTCGGG 60.468 55.000 0.00 0.00 46.94 5.14
2541 6175 1.532078 TTTTTCCCCAGGTTCGGGC 60.532 57.895 0.00 0.00 45.90 6.13
2542 6176 3.516949 TTTTCCCCAGGTTCGGGCC 62.517 63.158 0.00 0.00 45.90 5.80
2547 6181 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
2548 6182 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
2549 6183 4.377760 AGGTTCGGGCCCTCTCGA 62.378 66.667 22.43 9.26 0.00 4.04
2550 6184 3.155167 GGTTCGGGCCCTCTCGAT 61.155 66.667 22.43 0.00 35.25 3.59
2551 6185 2.107141 GTTCGGGCCCTCTCGATG 59.893 66.667 22.43 1.43 35.25 3.84
2552 6186 3.154473 TTCGGGCCCTCTCGATGG 61.154 66.667 22.43 0.54 35.25 3.51
2553 6187 3.672338 TTCGGGCCCTCTCGATGGA 62.672 63.158 22.43 3.53 35.25 3.41
2554 6188 3.610669 CGGGCCCTCTCGATGGAG 61.611 72.222 22.43 0.00 41.89 3.86
2562 6196 3.180891 CCTCTCGATGGAGGTAAAACC 57.819 52.381 11.66 0.00 45.65 3.27
2563 6197 2.158943 CCTCTCGATGGAGGTAAAACCC 60.159 54.545 11.66 0.00 45.65 4.11
2564 6198 2.766828 CTCTCGATGGAGGTAAAACCCT 59.233 50.000 4.78 0.00 39.75 4.34
2565 6199 3.958798 CTCTCGATGGAGGTAAAACCCTA 59.041 47.826 4.78 0.00 39.75 3.53
2566 6200 3.703052 TCTCGATGGAGGTAAAACCCTAC 59.297 47.826 4.78 0.00 39.75 3.18
2567 6201 3.705072 CTCGATGGAGGTAAAACCCTACT 59.295 47.826 0.00 0.00 39.75 2.57
2568 6202 3.703052 TCGATGGAGGTAAAACCCTACTC 59.297 47.826 0.00 0.00 39.75 2.59
2569 6203 3.181468 CGATGGAGGTAAAACCCTACTCC 60.181 52.174 0.00 0.00 39.75 3.85
2570 6204 3.572661 TGGAGGTAAAACCCTACTCCT 57.427 47.619 10.05 0.00 39.75 3.69
2571 6205 3.178865 TGGAGGTAAAACCCTACTCCTG 58.821 50.000 10.05 0.00 39.75 3.86
2572 6206 2.093075 GGAGGTAAAACCCTACTCCTGC 60.093 54.545 0.00 0.00 39.75 4.85
2573 6207 2.838813 GAGGTAAAACCCTACTCCTGCT 59.161 50.000 0.00 0.00 39.75 4.24
2574 6208 3.257578 AGGTAAAACCCTACTCCTGCTT 58.742 45.455 0.00 0.00 39.75 3.91
2575 6209 3.009143 AGGTAAAACCCTACTCCTGCTTG 59.991 47.826 0.00 0.00 39.75 4.01
2576 6210 3.008704 GGTAAAACCCTACTCCTGCTTGA 59.991 47.826 0.00 0.00 30.04 3.02
2577 6211 4.324331 GGTAAAACCCTACTCCTGCTTGAT 60.324 45.833 0.00 0.00 30.04 2.57
2578 6212 4.388577 AAAACCCTACTCCTGCTTGATT 57.611 40.909 0.00 0.00 0.00 2.57
2579 6213 3.356529 AACCCTACTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
2580 6214 2.551270 ACCCTACTCCTGCTTGATTGA 58.449 47.619 0.00 0.00 0.00 2.57
2581 6215 3.118531 ACCCTACTCCTGCTTGATTGAT 58.881 45.455 0.00 0.00 0.00 2.57
2582 6216 4.298626 ACCCTACTCCTGCTTGATTGATA 58.701 43.478 0.00 0.00 0.00 2.15
2583 6217 4.910304 ACCCTACTCCTGCTTGATTGATAT 59.090 41.667 0.00 0.00 0.00 1.63
2584 6218 5.370880 ACCCTACTCCTGCTTGATTGATATT 59.629 40.000 0.00 0.00 0.00 1.28
2585 6219 5.704515 CCCTACTCCTGCTTGATTGATATTG 59.295 44.000 0.00 0.00 0.00 1.90
2586 6220 6.464892 CCCTACTCCTGCTTGATTGATATTGA 60.465 42.308 0.00 0.00 0.00 2.57
2587 6221 7.166851 CCTACTCCTGCTTGATTGATATTGAT 58.833 38.462 0.00 0.00 0.00 2.57
2588 6222 6.879276 ACTCCTGCTTGATTGATATTGATG 57.121 37.500 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.989253 CGGGACCAAAGGCCAACC 60.989 66.667 5.01 0.00 0.00 3.77
1 2 2.989253 CCGGGACCAAAGGCCAAC 60.989 66.667 5.01 0.00 0.00 3.77
2 3 2.987355 GAACCGGGACCAAAGGCCAA 62.987 60.000 6.32 0.00 0.00 4.52
3 4 3.501040 GAACCGGGACCAAAGGCCA 62.501 63.158 6.32 0.00 0.00 5.36
4 5 2.675423 GAACCGGGACCAAAGGCC 60.675 66.667 6.32 0.00 0.00 5.19
5 6 3.053896 CGAACCGGGACCAAAGGC 61.054 66.667 6.32 0.00 0.00 4.35
6 7 1.964373 CACGAACCGGGACCAAAGG 60.964 63.158 6.32 0.00 28.17 3.11
7 8 2.613506 GCACGAACCGGGACCAAAG 61.614 63.158 6.32 0.00 28.17 2.77
8 9 2.592287 GCACGAACCGGGACCAAA 60.592 61.111 6.32 0.00 28.17 3.28
9 10 4.629523 GGCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.34 3.67
52 53 3.801997 AATGGGCCTCGCTCCTGG 61.802 66.667 4.53 0.00 0.00 4.45
82 83 1.934459 TTTTGGTCCCGGTTGGTGGA 61.934 55.000 0.00 0.00 34.77 4.02
101 103 2.995574 CCCGGTTCGTCTGGACCT 60.996 66.667 0.00 0.00 45.09 3.85
111 113 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
149 151 4.778143 CCCGGTTCTTGAGCCCCG 62.778 72.222 0.00 0.00 40.12 5.73
150 152 3.623703 GACCCGGTTCTTGAGCCCC 62.624 68.421 0.00 0.00 0.00 5.80
158 160 2.355115 GGCATTGGACCCGGTTCT 59.645 61.111 0.00 0.00 0.00 3.01
159 161 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
167 169 3.020647 ACCGATGGGGGCATTGGA 61.021 61.111 0.00 0.00 41.60 3.53
181 183 1.449601 CAATCCAGAACCGGGACCG 60.450 63.158 6.32 3.25 37.23 4.79
197 199 0.034863 GCCCATTAGTCCCGGTTCAA 60.035 55.000 0.00 0.00 0.00 2.69
199 201 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
205 207 1.146263 CGGTCCAGCCCATTAGTCC 59.854 63.158 0.00 0.00 0.00 3.85
219 221 2.438434 CAATGGTCCAGGCCGGTC 60.438 66.667 0.00 0.00 35.57 4.79
220 222 4.740822 GCAATGGTCCAGGCCGGT 62.741 66.667 1.90 0.00 35.57 5.28
228 230 0.252239 AGAAAAGGGGGCAATGGTCC 60.252 55.000 0.00 0.00 38.40 4.46
229 231 2.100197 GTAGAAAAGGGGGCAATGGTC 58.900 52.381 0.00 0.00 0.00 4.02
234 236 2.983898 ACACTAGTAGAAAAGGGGGCAA 59.016 45.455 3.59 0.00 0.00 4.52
235 237 2.627933 ACACTAGTAGAAAAGGGGGCA 58.372 47.619 3.59 0.00 0.00 5.36
266 268 8.322091 ACTAAAGATATGCTTGAAGTGGTTACT 58.678 33.333 0.00 0.00 36.80 2.24
270 272 6.992063 CACTAAAGATATGCTTGAAGTGGT 57.008 37.500 0.00 0.00 42.28 4.16
275 277 7.495934 GCTACTTCCACTAAAGATATGCTTGAA 59.504 37.037 0.00 0.00 36.80 2.69
286 288 3.244770 TGGGGTTGCTACTTCCACTAAAG 60.245 47.826 9.00 0.00 0.00 1.85
287 289 2.712087 TGGGGTTGCTACTTCCACTAAA 59.288 45.455 9.00 0.00 0.00 1.85
290 292 0.693049 CTGGGGTTGCTACTTCCACT 59.307 55.000 9.00 0.00 0.00 4.00
293 295 1.209747 CCTACTGGGGTTGCTACTTCC 59.790 57.143 0.00 1.68 0.00 3.46
309 311 0.817229 GCTGAGCTGAATGGCCCTAC 60.817 60.000 0.00 0.00 0.00 3.18
322 324 1.004440 AAGAACCACCTCGCTGAGC 60.004 57.895 0.00 0.00 0.00 4.26
328 330 1.473434 GGCATAGGAAGAACCACCTCG 60.473 57.143 0.00 0.00 42.04 4.63
329 331 1.840635 AGGCATAGGAAGAACCACCTC 59.159 52.381 0.00 0.00 42.04 3.85
332 334 4.689612 TCATAGGCATAGGAAGAACCAC 57.310 45.455 0.00 0.00 42.04 4.16
335 337 6.467677 TGCTAATCATAGGCATAGGAAGAAC 58.532 40.000 0.00 0.00 0.00 3.01
364 366 7.103641 AGATAGAAACAATGCCTACTTCGAAA 58.896 34.615 0.00 0.00 0.00 3.46
365 367 6.640518 AGATAGAAACAATGCCTACTTCGAA 58.359 36.000 0.00 0.00 0.00 3.71
367 369 5.463724 GGAGATAGAAACAATGCCTACTTCG 59.536 44.000 0.00 0.00 0.00 3.79
391 393 7.337184 GGTCTAGGGACAGAAAAATCCTAAAAG 59.663 40.741 0.00 0.00 43.77 2.27
392 394 7.018249 AGGTCTAGGGACAGAAAAATCCTAAAA 59.982 37.037 0.00 0.00 43.77 1.52
393 395 6.504279 AGGTCTAGGGACAGAAAAATCCTAAA 59.496 38.462 0.00 0.00 43.77 1.85
397 400 4.471747 AGAGGTCTAGGGACAGAAAAATCC 59.528 45.833 0.00 0.00 43.77 3.01
404 407 0.033011 GGCAGAGGTCTAGGGACAGA 60.033 60.000 0.00 0.00 43.77 3.41
439 442 7.016661 AGGAACTAGATGAGACTTGGAGAAAAA 59.983 37.037 0.00 0.00 36.02 1.94
444 447 5.930837 AAGGAACTAGATGAGACTTGGAG 57.069 43.478 0.00 0.00 38.49 3.86
473 476 7.707624 TGCTGATTTTGATAGGATGAAAGTT 57.292 32.000 0.00 0.00 0.00 2.66
474 477 7.177216 TGTTGCTGATTTTGATAGGATGAAAGT 59.823 33.333 0.00 0.00 0.00 2.66
476 479 7.363181 CCTGTTGCTGATTTTGATAGGATGAAA 60.363 37.037 0.00 0.00 0.00 2.69
502 505 8.939201 TGTCTTATCTGAATCTCAACATCTTC 57.061 34.615 0.00 0.00 0.00 2.87
503 506 9.545105 GATGTCTTATCTGAATCTCAACATCTT 57.455 33.333 0.00 0.00 38.16 2.40
506 509 9.327628 CTTGATGTCTTATCTGAATCTCAACAT 57.672 33.333 0.00 0.00 0.00 2.71
571 575 0.037590 TTAACAGGGACGCAGCCATT 59.962 50.000 0.00 0.00 0.00 3.16
573 577 0.676466 CATTAACAGGGACGCAGCCA 60.676 55.000 0.00 0.00 0.00 4.75
574 578 0.676782 ACATTAACAGGGACGCAGCC 60.677 55.000 0.00 0.00 0.00 4.85
580 584 3.434940 AGGTGGAACATTAACAGGGAC 57.565 47.619 0.00 0.00 44.52 4.46
605 609 6.070938 GGCTAAGACTAGGGTTCTCAGTAAAA 60.071 42.308 0.00 0.00 0.00 1.52
609 617 3.245658 TGGCTAAGACTAGGGTTCTCAGT 60.246 47.826 0.00 0.00 0.00 3.41
612 620 2.101750 GCTGGCTAAGACTAGGGTTCTC 59.898 54.545 0.00 0.00 0.00 2.87
615 623 1.834263 CTGCTGGCTAAGACTAGGGTT 59.166 52.381 0.00 0.00 0.00 4.11
648 657 3.827722 ACTATGTGTCCTCCTCTAGCTC 58.172 50.000 0.00 0.00 0.00 4.09
650 659 5.346181 AAAACTATGTGTCCTCCTCTAGC 57.654 43.478 0.00 0.00 0.00 3.42
651 660 8.068892 AGTAAAAACTATGTGTCCTCCTCTAG 57.931 38.462 0.00 0.00 0.00 2.43
656 665 6.002082 ACCAAGTAAAAACTATGTGTCCTCC 58.998 40.000 0.00 0.00 0.00 4.30
687 696 9.769677 TGAAGTGGCATAGACTACCTAATATAT 57.230 33.333 0.00 0.00 0.00 0.86
688 697 9.596308 TTGAAGTGGCATAGACTACCTAATATA 57.404 33.333 0.00 0.00 0.00 0.86
689 698 8.492415 TTGAAGTGGCATAGACTACCTAATAT 57.508 34.615 0.00 0.00 0.00 1.28
690 699 7.907841 TTGAAGTGGCATAGACTACCTAATA 57.092 36.000 0.00 0.00 0.00 0.98
691 700 6.808321 TTGAAGTGGCATAGACTACCTAAT 57.192 37.500 0.00 0.00 0.00 1.73
692 701 6.808321 ATTGAAGTGGCATAGACTACCTAA 57.192 37.500 0.00 0.00 0.00 2.69
693 702 6.808321 AATTGAAGTGGCATAGACTACCTA 57.192 37.500 0.00 0.00 0.00 3.08
694 703 5.700402 AATTGAAGTGGCATAGACTACCT 57.300 39.130 0.00 0.00 0.00 3.08
695 704 6.759497 AAAATTGAAGTGGCATAGACTACC 57.241 37.500 0.00 0.00 0.00 3.18
696 705 8.893727 ACATAAAATTGAAGTGGCATAGACTAC 58.106 33.333 0.00 0.00 0.00 2.73
697 706 9.461312 AACATAAAATTGAAGTGGCATAGACTA 57.539 29.630 0.00 0.00 0.00 2.59
698 707 7.944729 ACATAAAATTGAAGTGGCATAGACT 57.055 32.000 0.00 0.00 0.00 3.24
699 708 8.986477 AAACATAAAATTGAAGTGGCATAGAC 57.014 30.769 0.00 0.00 0.00 2.59
700 709 8.801299 TGAAACATAAAATTGAAGTGGCATAGA 58.199 29.630 0.00 0.00 0.00 1.98
701 710 8.863049 GTGAAACATAAAATTGAAGTGGCATAG 58.137 33.333 0.00 0.00 36.32 2.23
702 711 7.816995 GGTGAAACATAAAATTGAAGTGGCATA 59.183 33.333 0.00 0.00 39.98 3.14
703 712 6.650390 GGTGAAACATAAAATTGAAGTGGCAT 59.350 34.615 0.00 0.00 39.98 4.40
704 713 5.988561 GGTGAAACATAAAATTGAAGTGGCA 59.011 36.000 0.00 0.00 39.98 4.92
705 714 5.988561 TGGTGAAACATAAAATTGAAGTGGC 59.011 36.000 0.00 0.00 39.98 5.01
706 715 8.090214 AGATGGTGAAACATAAAATTGAAGTGG 58.910 33.333 0.00 0.00 39.98 4.00
707 716 9.132521 GAGATGGTGAAACATAAAATTGAAGTG 57.867 33.333 0.00 0.00 39.98 3.16
708 717 8.023128 CGAGATGGTGAAACATAAAATTGAAGT 58.977 33.333 0.00 0.00 39.98 3.01
709 718 8.023128 ACGAGATGGTGAAACATAAAATTGAAG 58.977 33.333 0.00 0.00 39.98 3.02
710 719 7.881142 ACGAGATGGTGAAACATAAAATTGAA 58.119 30.769 0.00 0.00 39.98 2.69
711 720 7.447374 ACGAGATGGTGAAACATAAAATTGA 57.553 32.000 0.00 0.00 39.98 2.57
712 721 9.619316 TTTACGAGATGGTGAAACATAAAATTG 57.381 29.630 0.00 0.00 39.98 2.32
757 766 9.226345 GCTCGTCCATTTCTTTCATAAAAATAG 57.774 33.333 0.00 0.00 0.00 1.73
758 767 8.735315 TGCTCGTCCATTTCTTTCATAAAAATA 58.265 29.630 0.00 0.00 0.00 1.40
759 768 7.542130 GTGCTCGTCCATTTCTTTCATAAAAAT 59.458 33.333 0.00 0.00 0.00 1.82
760 769 6.861055 GTGCTCGTCCATTTCTTTCATAAAAA 59.139 34.615 0.00 0.00 0.00 1.94
761 770 6.378582 GTGCTCGTCCATTTCTTTCATAAAA 58.621 36.000 0.00 0.00 0.00 1.52
762 771 5.390461 CGTGCTCGTCCATTTCTTTCATAAA 60.390 40.000 0.00 0.00 0.00 1.40
763 772 4.092821 CGTGCTCGTCCATTTCTTTCATAA 59.907 41.667 0.00 0.00 0.00 1.90
764 773 3.616821 CGTGCTCGTCCATTTCTTTCATA 59.383 43.478 0.00 0.00 0.00 2.15
765 774 2.416547 CGTGCTCGTCCATTTCTTTCAT 59.583 45.455 0.00 0.00 0.00 2.57
766 775 1.798223 CGTGCTCGTCCATTTCTTTCA 59.202 47.619 0.00 0.00 0.00 2.69
767 776 2.066262 TCGTGCTCGTCCATTTCTTTC 58.934 47.619 8.17 0.00 38.33 2.62
768 777 1.798813 GTCGTGCTCGTCCATTTCTTT 59.201 47.619 8.17 0.00 38.33 2.52
769 778 1.270094 TGTCGTGCTCGTCCATTTCTT 60.270 47.619 8.17 0.00 38.33 2.52
770 779 0.317160 TGTCGTGCTCGTCCATTTCT 59.683 50.000 8.17 0.00 38.33 2.52
771 780 1.136336 GTTGTCGTGCTCGTCCATTTC 60.136 52.381 8.17 0.00 38.33 2.17
772 781 0.865769 GTTGTCGTGCTCGTCCATTT 59.134 50.000 8.17 0.00 38.33 2.32
773 782 1.282248 CGTTGTCGTGCTCGTCCATT 61.282 55.000 8.17 0.00 38.33 3.16
774 783 1.733041 CGTTGTCGTGCTCGTCCAT 60.733 57.895 8.17 0.00 38.33 3.41
775 784 2.354188 CGTTGTCGTGCTCGTCCA 60.354 61.111 8.17 3.84 38.33 4.02
776 785 3.764049 GCGTTGTCGTGCTCGTCC 61.764 66.667 8.17 1.21 39.49 4.79
777 786 4.104633 CGCGTTGTCGTGCTCGTC 62.105 66.667 8.17 3.14 40.56 4.20
784 793 4.424430 GATTGCGCGCGTTGTCGT 62.424 61.111 32.35 11.68 39.49 4.34
785 794 3.784753 TATTGATTGCGCGCGTTGTCG 62.785 52.381 32.35 3.26 40.37 4.35
786 795 0.247497 TATTGATTGCGCGCGTTGTC 60.247 50.000 32.35 24.31 0.00 3.18
787 796 0.167033 TTATTGATTGCGCGCGTTGT 59.833 45.000 32.35 17.09 0.00 3.32
788 797 1.185549 CATTATTGATTGCGCGCGTTG 59.814 47.619 32.35 7.75 0.00 4.10
789 798 1.063321 TCATTATTGATTGCGCGCGTT 59.937 42.857 32.35 16.66 0.00 4.84
790 799 0.655208 TCATTATTGATTGCGCGCGT 59.345 45.000 32.35 18.25 0.00 6.01
791 800 1.900603 GATCATTATTGATTGCGCGCG 59.099 47.619 28.44 28.44 42.73 6.86
792 801 3.193157 AGATCATTATTGATTGCGCGC 57.807 42.857 27.26 27.26 42.73 6.86
793 802 5.521516 ACTAGATCATTATTGATTGCGCG 57.478 39.130 0.00 0.00 42.73 6.86
794 803 7.857389 TCAAAACTAGATCATTATTGATTGCGC 59.143 33.333 0.00 0.00 42.73 6.09
795 804 9.162793 GTCAAAACTAGATCATTATTGATTGCG 57.837 33.333 0.00 0.00 42.73 4.85
800 809 9.383519 GGAGTGTCAAAACTAGATCATTATTGA 57.616 33.333 0.00 0.00 36.00 2.57
801 810 9.388506 AGGAGTGTCAAAACTAGATCATTATTG 57.611 33.333 0.00 0.00 0.00 1.90
802 811 9.965902 AAGGAGTGTCAAAACTAGATCATTATT 57.034 29.630 0.00 0.00 0.00 1.40
805 814 9.442047 CTTAAGGAGTGTCAAAACTAGATCATT 57.558 33.333 0.00 0.00 0.00 2.57
806 815 7.550906 GCTTAAGGAGTGTCAAAACTAGATCAT 59.449 37.037 4.29 0.00 0.00 2.45
807 816 6.874134 GCTTAAGGAGTGTCAAAACTAGATCA 59.126 38.462 4.29 0.00 0.00 2.92
808 817 6.874134 TGCTTAAGGAGTGTCAAAACTAGATC 59.126 38.462 4.29 0.00 0.00 2.75
809 818 6.651225 GTGCTTAAGGAGTGTCAAAACTAGAT 59.349 38.462 4.29 0.00 0.00 1.98
810 819 5.989777 GTGCTTAAGGAGTGTCAAAACTAGA 59.010 40.000 4.29 0.00 0.00 2.43
811 820 5.758296 TGTGCTTAAGGAGTGTCAAAACTAG 59.242 40.000 4.29 0.00 0.00 2.57
812 821 5.676552 TGTGCTTAAGGAGTGTCAAAACTA 58.323 37.500 4.29 0.00 0.00 2.24
813 822 4.523083 TGTGCTTAAGGAGTGTCAAAACT 58.477 39.130 4.29 0.00 0.00 2.66
814 823 4.893424 TGTGCTTAAGGAGTGTCAAAAC 57.107 40.909 4.29 0.00 0.00 2.43
815 824 4.947388 AGTTGTGCTTAAGGAGTGTCAAAA 59.053 37.500 4.29 0.00 0.00 2.44
816 825 4.523083 AGTTGTGCTTAAGGAGTGTCAAA 58.477 39.130 4.29 0.00 0.00 2.69
817 826 4.150897 AGTTGTGCTTAAGGAGTGTCAA 57.849 40.909 4.29 0.00 0.00 3.18
818 827 3.838244 AGTTGTGCTTAAGGAGTGTCA 57.162 42.857 4.29 0.00 0.00 3.58
819 828 4.884247 AGTAGTTGTGCTTAAGGAGTGTC 58.116 43.478 4.29 0.00 0.00 3.67
820 829 4.558898 CGAGTAGTTGTGCTTAAGGAGTGT 60.559 45.833 4.29 0.00 0.00 3.55
821 830 3.921021 CGAGTAGTTGTGCTTAAGGAGTG 59.079 47.826 4.29 0.00 0.00 3.51
822 831 3.825014 TCGAGTAGTTGTGCTTAAGGAGT 59.175 43.478 4.29 0.00 0.00 3.85
823 832 4.416620 CTCGAGTAGTTGTGCTTAAGGAG 58.583 47.826 3.62 0.00 0.00 3.69
824 833 3.192844 CCTCGAGTAGTTGTGCTTAAGGA 59.807 47.826 12.31 0.00 0.00 3.36
825 834 3.056749 ACCTCGAGTAGTTGTGCTTAAGG 60.057 47.826 12.31 0.00 0.00 2.69
826 835 4.175787 ACCTCGAGTAGTTGTGCTTAAG 57.824 45.455 12.31 0.00 0.00 1.85
827 836 5.306532 CTACCTCGAGTAGTTGTGCTTAA 57.693 43.478 12.31 0.00 43.12 1.85
828 837 4.959596 CTACCTCGAGTAGTTGTGCTTA 57.040 45.455 12.31 0.00 43.12 3.09
829 838 3.851976 CTACCTCGAGTAGTTGTGCTT 57.148 47.619 12.31 0.00 43.12 3.91
838 847 2.420269 CCAGCACTCTCTACCTCGAGTA 60.420 54.545 12.31 3.30 38.37 2.59
839 848 1.680555 CCAGCACTCTCTACCTCGAGT 60.681 57.143 12.31 2.17 40.92 4.18
840 849 1.021202 CCAGCACTCTCTACCTCGAG 58.979 60.000 5.13 5.13 0.00 4.04
841 850 1.032657 GCCAGCACTCTCTACCTCGA 61.033 60.000 0.00 0.00 0.00 4.04
842 851 1.034838 AGCCAGCACTCTCTACCTCG 61.035 60.000 0.00 0.00 0.00 4.63
843 852 1.953686 CTAGCCAGCACTCTCTACCTC 59.046 57.143 0.00 0.00 0.00 3.85
844 853 1.286553 ACTAGCCAGCACTCTCTACCT 59.713 52.381 0.00 0.00 0.00 3.08
845 854 1.679153 GACTAGCCAGCACTCTCTACC 59.321 57.143 0.00 0.00 0.00 3.18
846 855 1.679153 GGACTAGCCAGCACTCTCTAC 59.321 57.143 0.00 0.00 36.34 2.59
847 856 1.747552 CGGACTAGCCAGCACTCTCTA 60.748 57.143 0.00 0.00 35.94 2.43
848 857 1.034838 CGGACTAGCCAGCACTCTCT 61.035 60.000 0.00 0.00 35.94 3.10
849 858 1.435515 CGGACTAGCCAGCACTCTC 59.564 63.158 0.00 0.00 35.94 3.20
872 881 2.295349 GCGGAGGAATCGGTATCTTGTA 59.705 50.000 0.00 0.00 0.00 2.41
892 901 3.433615 AGATGAACGTGTAGCAAAGAAGC 59.566 43.478 0.00 0.00 0.00 3.86
899 908 3.521560 GATTGGAGATGAACGTGTAGCA 58.478 45.455 0.00 0.00 0.00 3.49
916 925 1.152777 TAATGGCGGCCAGGGATTG 60.153 57.895 27.62 0.00 36.75 2.67
917 926 1.152756 GTAATGGCGGCCAGGGATT 60.153 57.895 27.62 18.25 36.75 3.01
918 927 2.056906 GAGTAATGGCGGCCAGGGAT 62.057 60.000 27.62 15.09 36.75 3.85
919 928 2.690881 AGTAATGGCGGCCAGGGA 60.691 61.111 27.62 11.87 36.75 4.20
920 929 2.203209 GAGTAATGGCGGCCAGGG 60.203 66.667 27.62 0.00 36.75 4.45
921 930 1.819632 GTGAGTAATGGCGGCCAGG 60.820 63.158 27.62 0.00 36.75 4.45
922 931 0.676466 TTGTGAGTAATGGCGGCCAG 60.676 55.000 27.62 0.00 36.75 4.85
923 932 0.958382 GTTGTGAGTAATGGCGGCCA 60.958 55.000 26.11 26.11 38.19 5.36
924 933 1.654023 GGTTGTGAGTAATGGCGGCC 61.654 60.000 13.32 13.32 0.00 6.13
925 934 0.958382 TGGTTGTGAGTAATGGCGGC 60.958 55.000 0.00 0.00 0.00 6.53
931 940 4.798882 TGAGGGTTTTGGTTGTGAGTAAT 58.201 39.130 0.00 0.00 0.00 1.89
936 945 2.025793 TGTCTGAGGGTTTTGGTTGTGA 60.026 45.455 0.00 0.00 0.00 3.58
937 946 2.358898 CTGTCTGAGGGTTTTGGTTGTG 59.641 50.000 0.00 0.00 0.00 3.33
942 951 2.938956 ACTCTGTCTGAGGGTTTTGG 57.061 50.000 11.06 0.00 46.72 3.28
952 961 3.704381 GGCACGAGTACTCTGTCTG 57.296 57.895 20.34 10.85 0.00 3.51
972 981 1.099879 GGAGTGATGCATGGACAGCC 61.100 60.000 2.46 2.97 0.00 4.85
988 997 2.951229 ATAAATACAAGGCCGGGGAG 57.049 50.000 2.18 0.00 0.00 4.30
1006 1015 1.131638 TCGATGCTTTGCCTCCCTAT 58.868 50.000 0.00 0.00 0.00 2.57
1014 1023 0.464373 TCCCCTCATCGATGCTTTGC 60.464 55.000 20.81 0.00 0.00 3.68
1162 1174 2.359975 GGCAGAGTGGAAACCGGG 60.360 66.667 6.32 0.00 0.00 5.73
1192 1204 1.198713 CCTGACCAGCAGTAGTGGAT 58.801 55.000 0.00 0.00 43.33 3.41
1196 1208 1.187087 GTAGCCTGACCAGCAGTAGT 58.813 55.000 0.00 0.00 43.33 2.73
1199 1211 1.536418 TGGTAGCCTGACCAGCAGT 60.536 57.895 0.00 0.00 44.79 4.40
1207 2079 1.943968 GCGTTCATGTTGGTAGCCTGA 60.944 52.381 0.00 0.00 0.00 3.86
1247 2119 0.108138 AGTTGGCGATGAGTAGTGGC 60.108 55.000 0.00 0.00 0.00 5.01
1264 2136 1.777941 GGTCCTTACCGATCCTGAGT 58.222 55.000 0.00 0.00 35.62 3.41
1279 2151 4.715297 TGGAGGATTAGTAAGTTGAGGTCC 59.285 45.833 0.00 0.00 0.00 4.46
1281 2153 6.893020 ATTGGAGGATTAGTAAGTTGAGGT 57.107 37.500 0.00 0.00 0.00 3.85
1314 2186 7.708322 GCATACCACATCGATATGATCTACAAT 59.292 37.037 4.95 0.00 34.13 2.71
1315 2187 7.035612 GCATACCACATCGATATGATCTACAA 58.964 38.462 4.95 0.00 34.13 2.41
1316 2188 6.378280 AGCATACCACATCGATATGATCTACA 59.622 38.462 4.95 0.00 34.13 2.74
1317 2189 6.800543 AGCATACCACATCGATATGATCTAC 58.199 40.000 4.95 0.00 34.13 2.59
1318 2190 8.519799 TTAGCATACCACATCGATATGATCTA 57.480 34.615 4.95 0.00 34.13 1.98
1319 2191 5.929058 AGCATACCACATCGATATGATCT 57.071 39.130 4.95 0.00 34.13 2.75
1320 2192 8.654230 AATTAGCATACCACATCGATATGATC 57.346 34.615 4.95 0.00 34.13 2.92
1321 2193 8.481314 AGAATTAGCATACCACATCGATATGAT 58.519 33.333 4.95 3.15 38.01 2.45
1322 2194 7.840931 AGAATTAGCATACCACATCGATATGA 58.159 34.615 4.95 0.00 36.54 2.15
1323 2195 8.484641 AAGAATTAGCATACCACATCGATATG 57.515 34.615 0.00 0.00 39.17 1.78
1326 2198 9.507329 AAATAAGAATTAGCATACCACATCGAT 57.493 29.630 0.00 0.00 31.76 3.59
1327 2199 8.902540 AAATAAGAATTAGCATACCACATCGA 57.097 30.769 0.00 0.00 31.76 3.59
1342 2214 9.554724 CGCCGCATACATAATTAAATAAGAATT 57.445 29.630 0.00 0.00 0.00 2.17
1343 2215 8.941977 TCGCCGCATACATAATTAAATAAGAAT 58.058 29.630 0.00 0.00 0.00 2.40
1344 2216 8.312896 TCGCCGCATACATAATTAAATAAGAA 57.687 30.769 0.00 0.00 0.00 2.52
1345 2217 7.892778 TCGCCGCATACATAATTAAATAAGA 57.107 32.000 0.00 0.00 0.00 2.10
1346 2218 8.227791 AGTTCGCCGCATACATAATTAAATAAG 58.772 33.333 0.00 0.00 0.00 1.73
1347 2219 8.012809 CAGTTCGCCGCATACATAATTAAATAA 58.987 33.333 0.00 0.00 0.00 1.40
1348 2220 7.360522 CCAGTTCGCCGCATACATAATTAAATA 60.361 37.037 0.00 0.00 0.00 1.40
1349 2221 6.370593 CAGTTCGCCGCATACATAATTAAAT 58.629 36.000 0.00 0.00 0.00 1.40
1350 2222 5.277586 CCAGTTCGCCGCATACATAATTAAA 60.278 40.000 0.00 0.00 0.00 1.52
1351 2223 4.212425 CCAGTTCGCCGCATACATAATTAA 59.788 41.667 0.00 0.00 0.00 1.40
1352 2224 3.743911 CCAGTTCGCCGCATACATAATTA 59.256 43.478 0.00 0.00 0.00 1.40
1353 2225 2.548057 CCAGTTCGCCGCATACATAATT 59.452 45.455 0.00 0.00 0.00 1.40
1354 2226 2.143122 CCAGTTCGCCGCATACATAAT 58.857 47.619 0.00 0.00 0.00 1.28
1355 2227 1.137282 TCCAGTTCGCCGCATACATAA 59.863 47.619 0.00 0.00 0.00 1.90
1356 2228 0.747852 TCCAGTTCGCCGCATACATA 59.252 50.000 0.00 0.00 0.00 2.29
1357 2229 0.107897 TTCCAGTTCGCCGCATACAT 60.108 50.000 0.00 0.00 0.00 2.29
1358 2230 0.320858 TTTCCAGTTCGCCGCATACA 60.321 50.000 0.00 0.00 0.00 2.29
1359 2231 0.800012 TTTTCCAGTTCGCCGCATAC 59.200 50.000 0.00 0.00 0.00 2.39
1360 2232 1.745232 ATTTTCCAGTTCGCCGCATA 58.255 45.000 0.00 0.00 0.00 3.14
1361 2233 1.745232 TATTTTCCAGTTCGCCGCAT 58.255 45.000 0.00 0.00 0.00 4.73
1362 2234 1.524848 TTATTTTCCAGTTCGCCGCA 58.475 45.000 0.00 0.00 0.00 5.69
1365 2237 5.163652 ACAGCTAATTATTTTCCAGTTCGCC 60.164 40.000 0.00 0.00 0.00 5.54
1371 2243 6.441093 TGAGCACAGCTAATTATTTTCCAG 57.559 37.500 0.00 0.00 39.88 3.86
1379 2252 6.430925 ACAAACAAGATGAGCACAGCTAATTA 59.569 34.615 1.39 0.00 42.17 1.40
1389 2264 3.295093 TCCCAAACAAACAAGATGAGCA 58.705 40.909 0.00 0.00 0.00 4.26
1390 2265 4.022068 TCATCCCAAACAAACAAGATGAGC 60.022 41.667 0.00 0.00 36.20 4.26
1449 2327 2.280797 GTCGGCAGGCTGTTCACA 60.281 61.111 17.16 0.00 0.00 3.58
1465 2343 2.032528 CACCCTCATGTGCACCGT 59.967 61.111 15.69 0.00 0.00 4.83
1491 2369 3.660669 GGGATTAGGTGGATTTGGGGATA 59.339 47.826 0.00 0.00 0.00 2.59
1492 2370 2.450886 GGGATTAGGTGGATTTGGGGAT 59.549 50.000 0.00 0.00 0.00 3.85
1493 2371 1.856920 GGGATTAGGTGGATTTGGGGA 59.143 52.381 0.00 0.00 0.00 4.81
1494 2372 1.573376 TGGGATTAGGTGGATTTGGGG 59.427 52.381 0.00 0.00 0.00 4.96
1552 2437 6.489700 TCATGATACATGTTTGTTGTTGAGGT 59.510 34.615 2.30 0.00 37.28 3.85
1553 2438 6.912082 TCATGATACATGTTTGTTGTTGAGG 58.088 36.000 2.30 0.00 37.28 3.86
1554 2439 8.975410 AATCATGATACATGTTTGTTGTTGAG 57.025 30.769 9.04 0.00 37.28 3.02
1582 2467 8.874745 TTTTTCGCGACTATTTTATTCTTCTG 57.125 30.769 9.15 0.00 0.00 3.02
1627 2512 3.433615 CACAGCAGCCAACTAACTTACTC 59.566 47.826 0.00 0.00 0.00 2.59
1628 2513 3.403038 CACAGCAGCCAACTAACTTACT 58.597 45.455 0.00 0.00 0.00 2.24
1629 2514 2.095718 GCACAGCAGCCAACTAACTTAC 60.096 50.000 0.00 0.00 0.00 2.34
1630 2515 2.151202 GCACAGCAGCCAACTAACTTA 58.849 47.619 0.00 0.00 0.00 2.24
1631 2516 0.954452 GCACAGCAGCCAACTAACTT 59.046 50.000 0.00 0.00 0.00 2.66
1632 2517 0.109342 AGCACAGCAGCCAACTAACT 59.891 50.000 0.00 0.00 34.23 2.24
1633 2518 0.239347 CAGCACAGCAGCCAACTAAC 59.761 55.000 0.00 0.00 34.23 2.34
1634 2519 0.179020 ACAGCACAGCAGCCAACTAA 60.179 50.000 0.00 0.00 34.23 2.24
1635 2520 0.886043 CACAGCACAGCAGCCAACTA 60.886 55.000 0.00 0.00 34.23 2.24
1636 2521 2.191513 CACAGCACAGCAGCCAACT 61.192 57.895 0.00 0.00 34.23 3.16
1637 2522 2.008268 AACACAGCACAGCAGCCAAC 62.008 55.000 0.00 0.00 34.23 3.77
1638 2523 0.465278 TAACACAGCACAGCAGCCAA 60.465 50.000 0.00 0.00 34.23 4.52
1639 2524 1.148048 TAACACAGCACAGCAGCCA 59.852 52.632 0.00 0.00 34.23 4.75
1640 2525 1.576421 GTAACACAGCACAGCAGCC 59.424 57.895 0.00 0.00 34.23 4.85
1641 2526 1.165907 TGGTAACACAGCACAGCAGC 61.166 55.000 0.00 0.00 46.17 5.25
1642 2527 3.005205 TGGTAACACAGCACAGCAG 57.995 52.632 0.00 0.00 46.17 4.24
1668 2553 5.989777 TCACTTAGAACTTACAACTTCCAGC 59.010 40.000 0.00 0.00 0.00 4.85
1696 4780 7.039644 AGGGAGAGTACATTCGTAATTATGGAG 60.040 40.741 4.86 0.00 0.00 3.86
1699 4783 8.888579 AAAGGGAGAGTACATTCGTAATTATG 57.111 34.615 0.00 0.00 0.00 1.90
1727 4811 4.576463 AGCACAGTACCTTCTGTTTTTCAG 59.424 41.667 0.00 0.00 44.92 3.02
1729 4813 4.261197 CCAGCACAGTACCTTCTGTTTTTC 60.261 45.833 0.00 0.00 44.92 2.29
1730 4814 3.632145 CCAGCACAGTACCTTCTGTTTTT 59.368 43.478 0.00 0.00 44.92 1.94
1731 4815 3.214328 CCAGCACAGTACCTTCTGTTTT 58.786 45.455 0.00 0.00 44.92 2.43
1732 4816 2.851195 CCAGCACAGTACCTTCTGTTT 58.149 47.619 0.00 0.00 44.92 2.83
1733 4817 1.543429 GCCAGCACAGTACCTTCTGTT 60.543 52.381 0.00 0.00 44.92 3.16
1735 4819 1.016130 CGCCAGCACAGTACCTTCTG 61.016 60.000 0.00 0.00 40.80 3.02
1774 5348 8.237949 GCTAAAGTAAAGAAAGAAGGTCAATCC 58.762 37.037 0.00 0.00 0.00 3.01
1778 5399 8.691661 AATGCTAAAGTAAAGAAAGAAGGTCA 57.308 30.769 0.00 0.00 0.00 4.02
1784 5405 8.691661 ACAGGAAATGCTAAAGTAAAGAAAGA 57.308 30.769 0.00 0.00 0.00 2.52
1889 5511 2.813172 TGTGACGTTGGTGTATCTCGTA 59.187 45.455 0.00 0.00 34.93 3.43
1907 5529 7.764331 TGAGGAAATATTCATGTGTCAATGTG 58.236 34.615 0.00 0.00 0.00 3.21
1908 5530 7.943079 TGAGGAAATATTCATGTGTCAATGT 57.057 32.000 0.00 0.00 0.00 2.71
1909 5531 9.642327 TTTTGAGGAAATATTCATGTGTCAATG 57.358 29.630 0.00 0.00 0.00 2.82
1924 5547 9.246670 TGTTCAGATATCATGTTTTGAGGAAAT 57.753 29.630 5.32 0.00 37.89 2.17
1928 5551 9.512435 GAAATGTTCAGATATCATGTTTTGAGG 57.488 33.333 5.32 0.00 37.89 3.86
2092 5717 7.437862 GCAAAAAGAAAGGTTTCACATACATCA 59.562 33.333 5.30 0.00 39.61 3.07
2093 5718 7.437862 TGCAAAAAGAAAGGTTTCACATACATC 59.562 33.333 5.30 0.00 39.61 3.06
2218 5845 3.839293 CCAAACAACACGAAAAAGGACA 58.161 40.909 0.00 0.00 0.00 4.02
2252 5880 9.840427 ACAAAATCTCAAATCCTACATTAAACG 57.160 29.630 0.00 0.00 0.00 3.60
2276 5904 4.190772 TGATTTATGCAGCGATCTTCACA 58.809 39.130 0.00 0.00 0.00 3.58
2285 5913 3.040795 GCATTGACTGATTTATGCAGCG 58.959 45.455 0.00 0.00 42.18 5.18
2293 5921 2.496899 ACCCTCGCATTGACTGATTT 57.503 45.000 0.00 0.00 0.00 2.17
2294 5922 2.496899 AACCCTCGCATTGACTGATT 57.503 45.000 0.00 0.00 0.00 2.57
2338 5967 5.645497 AGCAGTGCTTTATTTCTTACAGAGG 59.355 40.000 13.14 0.00 33.89 3.69
2339 5968 6.734104 AGCAGTGCTTTATTTCTTACAGAG 57.266 37.500 13.14 0.00 33.89 3.35
2341 5970 6.457528 GGCTAGCAGTGCTTTATTTCTTACAG 60.458 42.308 25.23 10.76 40.44 2.74
2363 5992 6.973460 ACGTAACTTATTATAGACCAGGCT 57.027 37.500 0.00 0.00 0.00 4.58
2419 6053 4.038361 CCGACAGTTAGTCTGAATCATCG 58.962 47.826 1.79 0.89 46.27 3.84
2431 6065 3.872560 GGTTTTGACACCGACAGTTAG 57.127 47.619 0.00 0.00 0.00 2.34
2440 6074 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
2441 6075 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
2442 6076 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
2443 6077 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
2444 6078 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
2445 6079 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
2446 6080 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
2447 6081 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
2449 6083 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
2450 6084 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
2451 6085 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
2452 6086 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
2453 6087 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
2454 6088 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
2455 6089 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
2456 6090 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
2457 6091 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
2458 6092 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
2462 6096 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
2463 6097 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
2464 6098 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
2465 6099 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
2466 6100 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
2467 6101 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
2469 6103 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
2470 6104 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
2471 6105 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
2472 6106 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
2473 6107 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
2474 6108 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
2475 6109 2.152699 CGCCTAGACGCACAGTTCG 61.153 63.158 0.00 0.00 0.00 3.95
2476 6110 1.805945 CCGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
2477 6111 1.605058 ATCCGCCTAGACGCACAGTT 61.605 55.000 0.00 0.00 0.00 3.16
2478 6112 2.052690 ATCCGCCTAGACGCACAGT 61.053 57.895 0.00 0.00 0.00 3.55
2479 6113 1.589993 CATCCGCCTAGACGCACAG 60.590 63.158 0.00 0.00 0.00 3.66
2480 6114 2.494445 CATCCGCCTAGACGCACA 59.506 61.111 0.00 0.00 0.00 4.57
2481 6115 1.731433 TACCATCCGCCTAGACGCAC 61.731 60.000 0.00 0.00 0.00 5.34
2482 6116 1.038681 TTACCATCCGCCTAGACGCA 61.039 55.000 0.00 0.00 0.00 5.24
2483 6117 0.596859 GTTACCATCCGCCTAGACGC 60.597 60.000 0.00 0.00 0.00 5.19
2484 6118 0.742505 TGTTACCATCCGCCTAGACG 59.257 55.000 0.00 0.00 0.00 4.18
2485 6119 1.068741 CCTGTTACCATCCGCCTAGAC 59.931 57.143 0.00 0.00 0.00 2.59
2486 6120 1.063492 TCCTGTTACCATCCGCCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
2487 6121 1.341531 CTCCTGTTACCATCCGCCTAG 59.658 57.143 0.00 0.00 0.00 3.02
2488 6122 1.063492 TCTCCTGTTACCATCCGCCTA 60.063 52.381 0.00 0.00 0.00 3.93
2489 6123 0.325296 TCTCCTGTTACCATCCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
2490 6124 0.179081 GTCTCCTGTTACCATCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
2491 6125 0.535335 TGTCTCCTGTTACCATCCGC 59.465 55.000 0.00 0.00 0.00 5.54
2492 6126 2.418746 CCTTGTCTCCTGTTACCATCCG 60.419 54.545 0.00 0.00 0.00 4.18
2493 6127 2.092914 CCCTTGTCTCCTGTTACCATCC 60.093 54.545 0.00 0.00 0.00 3.51
2494 6128 2.838202 TCCCTTGTCTCCTGTTACCATC 59.162 50.000 0.00 0.00 0.00 3.51
2495 6129 2.572104 GTCCCTTGTCTCCTGTTACCAT 59.428 50.000 0.00 0.00 0.00 3.55
2496 6130 1.975680 GTCCCTTGTCTCCTGTTACCA 59.024 52.381 0.00 0.00 0.00 3.25
2497 6131 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
2498 6132 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
2499 6133 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
2500 6134 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
2501 6135 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
2502 6136 0.898320 ATCGTGTCCCTTGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
2503 6137 0.898320 CATCGTGTCCCTTGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
2504 6138 0.608640 ACATCGTGTCCCTTGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
2505 6139 2.457366 AACATCGTGTCCCTTGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
2506 6140 2.930826 AAACATCGTGTCCCTTGTCT 57.069 45.000 0.00 0.00 0.00 3.41
2507 6141 3.304458 GGAAAAACATCGTGTCCCTTGTC 60.304 47.826 0.00 0.00 0.00 3.18
2508 6142 2.621526 GGAAAAACATCGTGTCCCTTGT 59.378 45.455 0.00 0.00 0.00 3.16
2509 6143 2.030274 GGGAAAAACATCGTGTCCCTTG 60.030 50.000 0.00 0.00 44.01 3.61
2510 6144 2.235891 GGGAAAAACATCGTGTCCCTT 58.764 47.619 0.00 0.00 44.01 3.95
2511 6145 1.546998 GGGGAAAAACATCGTGTCCCT 60.547 52.381 6.98 0.00 46.23 4.20
2512 6146 0.885879 GGGGAAAAACATCGTGTCCC 59.114 55.000 0.00 0.00 46.27 4.46
2513 6147 1.539827 CTGGGGAAAAACATCGTGTCC 59.460 52.381 0.00 0.00 0.00 4.02
2514 6148 1.539827 CCTGGGGAAAAACATCGTGTC 59.460 52.381 0.00 0.00 0.00 3.67
2515 6149 1.133606 ACCTGGGGAAAAACATCGTGT 60.134 47.619 0.00 0.00 0.00 4.49
2516 6150 1.616159 ACCTGGGGAAAAACATCGTG 58.384 50.000 0.00 0.00 0.00 4.35
2517 6151 2.235891 GAACCTGGGGAAAAACATCGT 58.764 47.619 0.00 0.00 0.00 3.73
2518 6152 1.199097 CGAACCTGGGGAAAAACATCG 59.801 52.381 0.00 0.00 0.00 3.84
2519 6153 1.544246 CCGAACCTGGGGAAAAACATC 59.456 52.381 0.00 0.00 0.00 3.06
2520 6154 1.627864 CCGAACCTGGGGAAAAACAT 58.372 50.000 0.00 0.00 0.00 2.71
2521 6155 3.119225 CCGAACCTGGGGAAAAACA 57.881 52.632 0.00 0.00 0.00 2.83
2530 6164 3.787001 GAGAGGGCCCGAACCTGG 61.787 72.222 18.44 0.00 38.79 4.45
2531 6165 4.148825 CGAGAGGGCCCGAACCTG 62.149 72.222 18.44 1.23 38.79 4.00
2532 6166 3.680920 ATCGAGAGGGCCCGAACCT 62.681 63.158 18.44 12.55 42.18 3.50
2533 6167 3.155167 ATCGAGAGGGCCCGAACC 61.155 66.667 18.44 7.31 38.36 3.62
2534 6168 2.107141 CATCGAGAGGGCCCGAAC 59.893 66.667 18.44 12.45 38.36 3.95
2535 6169 3.154473 CCATCGAGAGGGCCCGAA 61.154 66.667 18.44 1.01 38.36 4.30
2536 6170 4.137615 TCCATCGAGAGGGCCCGA 62.138 66.667 18.44 10.63 39.25 5.14
2537 6171 3.610669 CTCCATCGAGAGGGCCCG 61.611 72.222 18.44 4.06 38.52 6.13
2543 6177 2.766828 AGGGTTTTACCTCCATCGAGAG 59.233 50.000 0.00 0.00 38.52 3.20
2544 6178 2.829023 AGGGTTTTACCTCCATCGAGA 58.171 47.619 0.00 0.00 38.52 4.04
2545 6179 3.705072 AGTAGGGTTTTACCTCCATCGAG 59.295 47.826 0.00 0.00 42.09 4.04
2546 6180 3.703052 GAGTAGGGTTTTACCTCCATCGA 59.297 47.826 0.00 0.00 42.09 3.59
2547 6181 3.181468 GGAGTAGGGTTTTACCTCCATCG 60.181 52.174 0.00 0.00 42.09 3.84
2548 6182 4.038633 AGGAGTAGGGTTTTACCTCCATC 58.961 47.826 6.76 0.00 42.09 3.51
2549 6183 3.780850 CAGGAGTAGGGTTTTACCTCCAT 59.219 47.826 6.76 0.00 42.09 3.41
2550 6184 3.178865 CAGGAGTAGGGTTTTACCTCCA 58.821 50.000 6.76 0.00 42.09 3.86
2551 6185 2.093075 GCAGGAGTAGGGTTTTACCTCC 60.093 54.545 0.00 0.00 42.09 4.30
2552 6186 2.838813 AGCAGGAGTAGGGTTTTACCTC 59.161 50.000 0.00 0.00 42.09 3.85
2553 6187 2.917205 AGCAGGAGTAGGGTTTTACCT 58.083 47.619 0.00 0.00 44.75 3.08
2554 6188 3.008704 TCAAGCAGGAGTAGGGTTTTACC 59.991 47.826 0.00 0.00 37.60 2.85
2555 6189 4.281898 TCAAGCAGGAGTAGGGTTTTAC 57.718 45.455 0.00 0.00 0.00 2.01
2556 6190 5.013704 TCAATCAAGCAGGAGTAGGGTTTTA 59.986 40.000 0.00 0.00 0.00 1.52
2557 6191 4.082125 CAATCAAGCAGGAGTAGGGTTTT 58.918 43.478 0.00 0.00 0.00 2.43
2558 6192 3.330701 TCAATCAAGCAGGAGTAGGGTTT 59.669 43.478 0.00 0.00 0.00 3.27
2559 6193 2.912956 TCAATCAAGCAGGAGTAGGGTT 59.087 45.455 0.00 0.00 0.00 4.11
2560 6194 2.551270 TCAATCAAGCAGGAGTAGGGT 58.449 47.619 0.00 0.00 0.00 4.34
2561 6195 3.853355 ATCAATCAAGCAGGAGTAGGG 57.147 47.619 0.00 0.00 0.00 3.53
2562 6196 6.528321 TCAATATCAATCAAGCAGGAGTAGG 58.472 40.000 0.00 0.00 0.00 3.18
2563 6197 8.030744 CATCAATATCAATCAAGCAGGAGTAG 57.969 38.462 0.00 0.00 0.00 2.57
2564 6198 7.974482 CATCAATATCAATCAAGCAGGAGTA 57.026 36.000 0.00 0.00 0.00 2.59
2565 6199 6.879276 CATCAATATCAATCAAGCAGGAGT 57.121 37.500 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.