Multiple sequence alignment - TraesCS5B01G518400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G518400 chr5B 100.000 4376 0 0 1 4376 681346009 681341634 0.000000e+00 8082.0
1 TraesCS5B01G518400 chr5B 93.768 1412 63 11 1076 2467 681618430 681617024 0.000000e+00 2097.0
2 TraesCS5B01G518400 chr5B 89.368 649 57 7 276 919 681619077 681618436 0.000000e+00 806.0
3 TraesCS5B01G518400 chr5B 90.741 432 33 3 2846 3274 681616500 681616073 1.770000e-158 569.0
4 TraesCS5B01G518400 chr5B 90.390 385 30 5 3798 4176 681614115 681613732 2.350000e-137 499.0
5 TraesCS5B01G518400 chr5B 85.102 443 62 4 1875 2314 681738153 681738594 2.400000e-122 449.0
6 TraesCS5B01G518400 chr5B 87.330 221 27 1 1 220 681621073 681620853 7.270000e-63 252.0
7 TraesCS5B01G518400 chr5B 82.333 300 43 5 1279 1571 681737610 681737906 7.270000e-63 252.0
8 TraesCS5B01G518400 chr5B 81.029 311 31 14 3720 4022 681587066 681586776 5.700000e-54 222.0
9 TraesCS5B01G518400 chr5B 90.400 125 11 1 3151 3274 681587640 681587516 3.500000e-36 163.0
10 TraesCS5B01G518400 chr5B 100.000 29 0 0 2333 2361 375800338 375800310 2.000000e-03 54.7
11 TraesCS5B01G518400 chr4A 90.976 1496 87 17 1000 2456 628848565 628850051 0.000000e+00 1971.0
12 TraesCS5B01G518400 chr4A 92.070 454 24 4 2846 3291 628850717 628851166 2.870000e-176 628.0
13 TraesCS5B01G518400 chr4A 92.836 335 14 6 3879 4209 628852738 628853066 1.100000e-130 477.0
14 TraesCS5B01G518400 chr4A 77.103 428 68 19 1886 2286 595283373 595282949 2.050000e-53 220.0
15 TraesCS5B01G518400 chr4A 94.643 112 5 1 808 919 628848458 628848568 5.820000e-39 172.0
16 TraesCS5B01G518400 chr4A 91.892 111 6 3 898 1006 741030589 741030480 7.580000e-33 152.0
17 TraesCS5B01G518400 chr4A 94.681 94 5 0 1711 1804 595283550 595283457 3.530000e-31 147.0
18 TraesCS5B01G518400 chr4A 87.879 66 2 2 3323 3387 628851170 628851230 6.070000e-09 73.1
19 TraesCS5B01G518400 chr4A 100.000 29 0 0 2333 2361 594380322 594380294 2.000000e-03 54.7
20 TraesCS5B01G518400 chr4A 100.000 29 0 0 2335 2363 652197381 652197409 2.000000e-03 54.7
21 TraesCS5B01G518400 chrUn 92.972 1181 75 3 1145 2320 67357568 67358745 0.000000e+00 1714.0
22 TraesCS5B01G518400 chrUn 86.937 911 82 16 15 920 67356584 67357462 0.000000e+00 989.0
23 TraesCS5B01G518400 chrUn 85.398 452 58 7 1875 2321 67332910 67333358 3.080000e-126 462.0
24 TraesCS5B01G518400 chrUn 89.562 297 23 1 2879 3167 67358742 67359038 1.920000e-98 370.0
25 TraesCS5B01G518400 chrUn 82.000 300 44 6 1279 1571 67332364 67332660 3.380000e-61 246.0
26 TraesCS5B01G518400 chrUn 80.685 321 32 15 3712 4022 299312690 299312990 5.700000e-54 222.0
27 TraesCS5B01G518400 chrUn 95.082 122 5 1 1000 1121 67357463 67357583 1.610000e-44 191.0
28 TraesCS5B01G518400 chrUn 90.984 122 10 1 3151 3271 299312126 299312247 3.500000e-36 163.0
29 TraesCS5B01G518400 chrUn 90.196 51 4 1 2334 2384 33357425 33357376 1.020000e-06 65.8
30 TraesCS5B01G518400 chr5D 92.697 890 35 10 1000 1870 539676222 539675344 0.000000e+00 1256.0
31 TraesCS5B01G518400 chr5D 88.370 920 89 9 2879 3788 539674074 539673163 0.000000e+00 1090.0
32 TraesCS5B01G518400 chr5D 89.302 645 38 11 1853 2467 539675323 539674680 0.000000e+00 780.0
33 TraesCS5B01G518400 chr5D 91.003 289 16 2 3908 4195 539673138 539672859 8.880000e-102 381.0
34 TraesCS5B01G518400 chr5D 85.551 263 35 3 2464 2724 539674633 539674372 5.580000e-69 272.0
35 TraesCS5B01G518400 chr5D 84.364 275 38 4 3430 3699 203067680 203067954 9.330000e-67 265.0
36 TraesCS5B01G518400 chr5D 81.973 294 42 10 3432 3718 407519349 407519060 5.660000e-59 239.0
37 TraesCS5B01G518400 chr5D 94.444 144 8 0 746 889 539676369 539676226 5.700000e-54 222.0
38 TraesCS5B01G518400 chr5D 84.058 138 10 6 622 748 539677681 539677545 5.940000e-24 122.0
39 TraesCS5B01G518400 chr5D 100.000 33 0 0 2329 2361 546651466 546651498 1.310000e-05 62.1
40 TraesCS5B01G518400 chr5D 100.000 29 0 0 2333 2361 324375068 324375040 2.000000e-03 54.7
41 TraesCS5B01G518400 chr4B 75.567 794 134 40 1530 2287 14653607 14652838 1.950000e-88 337.0
42 TraesCS5B01G518400 chr6A 85.145 276 36 4 3430 3700 81124923 81124648 1.200000e-70 278.0
43 TraesCS5B01G518400 chr6A 83.333 288 41 5 3430 3711 16339177 16339463 4.340000e-65 259.0
44 TraesCS5B01G518400 chr6A 82.927 287 41 7 3430 3710 27519403 27519687 7.270000e-63 252.0
45 TraesCS5B01G518400 chr6A 96.875 96 2 1 917 1012 612556351 612556445 4.530000e-35 159.0
46 TraesCS5B01G518400 chr4D 74.718 708 123 30 1629 2287 8137042 8136342 9.330000e-67 265.0
47 TraesCS5B01G518400 chr4D 95.050 101 4 1 905 1005 5081673 5081574 1.630000e-34 158.0
48 TraesCS5B01G518400 chr4D 92.233 103 8 0 1702 1804 8011216 8011318 3.530000e-31 147.0
49 TraesCS5B01G518400 chr4D 92.553 94 7 0 1711 1804 8150922 8150829 7.630000e-28 135.0
50 TraesCS5B01G518400 chr2A 83.276 293 44 4 3430 3717 216602152 216602444 9.330000e-67 265.0
51 TraesCS5B01G518400 chr3B 83.276 293 42 5 3430 3716 228803446 228803155 3.360000e-66 263.0
52 TraesCS5B01G518400 chr3B 100.000 30 0 0 2332 2361 547133057 547133028 6.110000e-04 56.5
53 TraesCS5B01G518400 chr5A 83.103 290 43 4 3430 3714 649477822 649478110 4.340000e-65 259.0
54 TraesCS5B01G518400 chr3D 97.895 95 1 1 911 1004 531693684 531693778 3.500000e-36 163.0
55 TraesCS5B01G518400 chr3D 100.000 32 0 0 2330 2361 419934523 419934492 4.730000e-05 60.2
56 TraesCS5B01G518400 chr3A 97.849 93 2 0 918 1010 86792950 86793042 1.260000e-35 161.0
57 TraesCS5B01G518400 chr7D 94.286 105 4 2 900 1003 153666392 153666289 4.530000e-35 159.0
58 TraesCS5B01G518400 chr7D 93.458 107 5 2 918 1022 568011131 568011025 1.630000e-34 158.0
59 TraesCS5B01G518400 chr6D 95.050 101 5 0 917 1017 438165064 438164964 4.530000e-35 159.0
60 TraesCS5B01G518400 chr6B 95.098 102 3 2 908 1007 116281203 116281102 4.530000e-35 159.0
61 TraesCS5B01G518400 chr7B 95.000 40 2 0 2597 2636 85822254 85822293 3.650000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G518400 chr5B 681341634 681346009 4375 True 8082.00 8082 100.000000 1 4376 1 chr5B.!!$R2 4375
1 TraesCS5B01G518400 chr5B 681613732 681621073 7341 True 844.60 2097 90.319400 1 4176 5 chr5B.!!$R4 4175
2 TraesCS5B01G518400 chr5B 681737610 681738594 984 False 350.50 449 83.717500 1279 2314 2 chr5B.!!$F1 1035
3 TraesCS5B01G518400 chr4A 628848458 628853066 4608 False 664.22 1971 91.680800 808 4209 5 chr4A.!!$F2 3401
4 TraesCS5B01G518400 chrUn 67356584 67359038 2454 False 816.00 1714 91.138250 15 3167 4 chrUn.!!$F2 3152
5 TraesCS5B01G518400 chrUn 67332364 67333358 994 False 354.00 462 83.699000 1279 2321 2 chrUn.!!$F1 1042
6 TraesCS5B01G518400 chr5D 539672859 539677681 4822 True 589.00 1256 89.346429 622 4195 7 chr5D.!!$R3 3573
7 TraesCS5B01G518400 chr4B 14652838 14653607 769 True 337.00 337 75.567000 1530 2287 1 chr4B.!!$R1 757
8 TraesCS5B01G518400 chr4D 8136342 8137042 700 True 265.00 265 74.718000 1629 2287 1 chr4D.!!$R2 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 2125 0.038166 GGTCCTTCATTGTGGGCAGA 59.962 55.0 5.69 0.00 0.00 4.26 F
932 3879 0.113776 ACAGTACTCCCTCCGTTCCA 59.886 55.0 0.00 0.00 0.00 3.53 F
1578 4553 0.981183 ACTTCACTTCGGCCATACCA 59.019 50.0 2.24 0.00 39.03 3.25 F
2016 5104 0.037232 GTGCTAGTGAAGAGGCCGTT 60.037 55.0 0.00 0.00 0.00 4.44 F
3217 6762 0.652592 GAATCTCGGGCACATGTTCG 59.347 55.0 0.00 0.75 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1374 4342 0.249573 GGAGTGACGACGGGAAAACA 60.250 55.000 0.00 0.0 0.00 2.83 R
1888 4967 1.379044 GGTGGCCTTGTCCATCTGG 60.379 63.158 3.32 0.0 38.57 3.86 R
3037 6563 0.101759 ATCATTTGCCGCTGTGATGC 59.898 50.000 5.35 0.0 30.61 3.91 R
3256 6801 0.105593 CGCCCTGATGCTGTAGTGAT 59.894 55.000 0.00 0.0 0.00 3.06 R
4273 10404 0.175760 TGGGCTCGAAGCTACATGTC 59.824 55.000 0.00 0.0 41.99 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.136147 CAGAAAGTGATGGCAGCGC 59.864 57.895 8.49 8.49 0.00 5.92
49 50 2.044252 TTAGGGCGTCGCTCTCCT 60.044 61.111 25.68 20.06 39.37 3.69
59 60 3.077556 GCTCTCCTCCTTGGCGGA 61.078 66.667 0.00 0.00 40.30 5.54
71 72 2.438434 GGCGGAACCACCATGGAG 60.438 66.667 21.47 11.19 40.96 3.86
112 114 4.349342 ACTCTTTGATCTGGTTCTTCAGGT 59.651 41.667 0.00 0.00 35.58 4.00
124 126 4.565652 GGTTCTTCAGGTGAAAGCCTATGA 60.566 45.833 0.00 0.00 37.04 2.15
129 131 5.902613 TCAGGTGAAAGCCTATGATTTTG 57.097 39.130 0.00 0.00 37.04 2.44
130 132 5.324409 TCAGGTGAAAGCCTATGATTTTGT 58.676 37.500 0.00 0.00 37.04 2.83
133 135 5.095490 GGTGAAAGCCTATGATTTTGTTCG 58.905 41.667 0.00 0.00 28.37 3.95
135 137 4.764823 TGAAAGCCTATGATTTTGTTCGGT 59.235 37.500 0.00 0.00 28.37 4.69
143 145 3.399330 TGATTTTGTTCGGTCAGGAGAC 58.601 45.455 0.00 0.00 44.21 3.36
166 168 2.622452 CCAATGCTCCCATGAAGGTTCT 60.622 50.000 0.00 0.00 34.66 3.01
170 172 1.683319 GCTCCCATGAAGGTTCTTCCC 60.683 57.143 0.00 0.00 36.75 3.97
204 206 2.483014 TGAAAACCGATGATCCCGTT 57.517 45.000 4.32 0.00 0.00 4.44
213 215 0.824109 ATGATCCCGTTCGAGCTTCA 59.176 50.000 0.00 0.00 0.00 3.02
219 221 0.443869 CCGTTCGAGCTTCAATGTGG 59.556 55.000 0.00 0.00 0.00 4.17
220 222 0.179215 CGTTCGAGCTTCAATGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
221 223 1.160137 GTTCGAGCTTCAATGTGGCT 58.840 50.000 0.00 2.99 39.16 4.75
222 224 1.135859 GTTCGAGCTTCAATGTGGCTG 60.136 52.381 7.31 2.14 36.37 4.85
223 225 0.674581 TCGAGCTTCAATGTGGCTGG 60.675 55.000 7.31 6.65 36.37 4.85
224 226 0.674581 CGAGCTTCAATGTGGCTGGA 60.675 55.000 7.31 0.00 36.37 3.86
225 227 1.760192 GAGCTTCAATGTGGCTGGAT 58.240 50.000 7.31 0.00 36.37 3.41
226 228 1.404391 GAGCTTCAATGTGGCTGGATG 59.596 52.381 7.31 0.00 36.37 3.51
227 229 0.179119 GCTTCAATGTGGCTGGATGC 60.179 55.000 0.00 0.00 41.94 3.91
228 230 1.179152 CTTCAATGTGGCTGGATGCA 58.821 50.000 0.00 0.00 45.15 3.96
229 231 0.889994 TTCAATGTGGCTGGATGCAC 59.110 50.000 0.00 0.00 45.15 4.57
230 232 0.251253 TCAATGTGGCTGGATGCACA 60.251 50.000 0.00 0.00 45.15 4.57
231 233 0.108992 CAATGTGGCTGGATGCACAC 60.109 55.000 0.00 1.57 45.15 3.82
272 287 1.921243 CGACGAGTGATATTGGTGCA 58.079 50.000 0.00 0.00 0.00 4.57
288 2036 2.264480 CAGATGTCGGGGCGTTCA 59.736 61.111 0.00 0.00 0.00 3.18
289 2037 1.811266 CAGATGTCGGGGCGTTCAG 60.811 63.158 0.00 0.00 0.00 3.02
335 2083 0.832626 AGTGGCGATGATGATGGTGA 59.167 50.000 0.00 0.00 0.00 4.02
351 2099 3.153919 TGGTGACAAAAATAGCAGGGTC 58.846 45.455 0.00 0.00 37.44 4.46
355 2103 2.227865 GACAAAAATAGCAGGGTCGCAA 59.772 45.455 0.00 0.00 0.00 4.85
368 2116 1.523758 GTCGCAACAGGTCCTTCATT 58.476 50.000 0.00 0.00 0.00 2.57
371 2119 1.069022 CGCAACAGGTCCTTCATTGTG 60.069 52.381 8.43 7.47 0.00 3.33
377 2125 0.038166 GGTCCTTCATTGTGGGCAGA 59.962 55.000 5.69 0.00 0.00 4.26
380 2128 0.321564 CCTTCATTGTGGGCAGACGA 60.322 55.000 0.00 0.00 0.00 4.20
429 2177 2.174107 CACTGCATGACAACGCGG 59.826 61.111 12.47 7.35 40.48 6.46
441 2189 2.452813 AACGCGGCTGCAACGATAG 61.453 57.895 19.50 1.08 42.97 2.08
471 2219 1.745489 CAAGTAGGGCTCCGTTGGC 60.745 63.158 0.00 0.00 0.00 4.52
472 2220 2.221299 AAGTAGGGCTCCGTTGGCA 61.221 57.895 0.00 0.00 0.00 4.92
576 2324 6.197364 TGACTTGGTGACATTTTAAAACGT 57.803 33.333 1.97 0.01 42.32 3.99
592 2340 1.098869 ACGTGCCAAACATGTGTTCA 58.901 45.000 0.00 0.00 46.95 3.18
594 2342 2.118683 CGTGCCAAACATGTGTTCAAG 58.881 47.619 0.00 0.00 37.25 3.02
600 2348 4.261741 GCCAAACATGTGTTCAAGAGTGAT 60.262 41.667 0.00 0.00 37.25 3.06
620 2368 4.039245 TGATCTTGTTTCAGAGTCCTCGTT 59.961 41.667 0.00 0.00 34.09 3.85
627 2375 1.203013 TCAGAGTCCTCGTTGAAGGGA 60.203 52.381 0.00 0.00 37.02 4.20
630 2378 1.343465 GAGTCCTCGTTGAAGGGAACA 59.657 52.381 0.00 0.00 37.02 3.18
643 2391 6.166984 TGAAGGGAACACAAATATGCAAAA 57.833 33.333 0.00 0.00 0.00 2.44
705 2463 6.409524 AAAAGTCAATTGAAAGAGCATGGA 57.590 33.333 10.35 0.00 0.00 3.41
722 2486 3.032265 TGGAAGAGTGGAGCTAGCATA 57.968 47.619 18.83 0.00 0.00 3.14
723 2487 3.581101 TGGAAGAGTGGAGCTAGCATAT 58.419 45.455 18.83 0.00 0.00 1.78
733 2497 4.592778 TGGAGCTAGCATATGGTGTGATAA 59.407 41.667 18.83 0.00 0.00 1.75
740 2504 3.056607 GCATATGGTGTGATAAATGGGGC 60.057 47.826 4.56 0.00 0.00 5.80
791 3733 4.141642 GCAAGGGCCTCCAAAAATAATCAT 60.142 41.667 6.46 0.00 34.83 2.45
854 3796 1.197430 AGGTCTTGCTGAGGTGAGGG 61.197 60.000 0.00 0.00 0.00 4.30
899 3841 4.517285 TGTTCCACATAGAAGATGCTTCC 58.483 43.478 3.71 0.00 0.00 3.46
907 3849 5.045286 ACATAGAAGATGCTTCCTGTTTCCT 60.045 40.000 3.71 0.00 0.00 3.36
916 3863 6.222038 TGCTTCCTGTTTCCTATAGTACAG 57.778 41.667 15.02 15.02 38.14 2.74
917 3864 5.720041 TGCTTCCTGTTTCCTATAGTACAGT 59.280 40.000 18.15 0.00 37.01 3.55
918 3865 6.893554 TGCTTCCTGTTTCCTATAGTACAGTA 59.106 38.462 18.15 6.95 37.01 2.74
919 3866 7.147949 TGCTTCCTGTTTCCTATAGTACAGTAC 60.148 40.741 18.15 2.05 37.01 2.73
920 3867 7.068470 GCTTCCTGTTTCCTATAGTACAGTACT 59.932 40.741 17.51 17.51 42.68 2.73
921 3868 8.517062 TTCCTGTTTCCTATAGTACAGTACTC 57.483 38.462 16.91 0.98 40.14 2.59
922 3869 7.059156 TCCTGTTTCCTATAGTACAGTACTCC 58.941 42.308 16.91 0.00 40.14 3.85
923 3870 6.264970 CCTGTTTCCTATAGTACAGTACTCCC 59.735 46.154 16.91 0.00 40.14 4.30
924 3871 6.978261 TGTTTCCTATAGTACAGTACTCCCT 58.022 40.000 16.91 6.12 40.14 4.20
925 3872 7.059156 TGTTTCCTATAGTACAGTACTCCCTC 58.941 42.308 16.91 2.56 40.14 4.30
926 3873 5.839517 TCCTATAGTACAGTACTCCCTCC 57.160 47.826 16.91 0.00 40.14 4.30
927 3874 4.285517 TCCTATAGTACAGTACTCCCTCCG 59.714 50.000 16.91 1.96 40.14 4.63
928 3875 4.041444 CCTATAGTACAGTACTCCCTCCGT 59.959 50.000 16.91 0.00 40.14 4.69
929 3876 2.895242 AGTACAGTACTCCCTCCGTT 57.105 50.000 7.48 0.00 32.47 4.44
930 3877 2.720915 AGTACAGTACTCCCTCCGTTC 58.279 52.381 7.48 0.00 32.47 3.95
931 3878 1.747924 GTACAGTACTCCCTCCGTTCC 59.252 57.143 3.19 0.00 0.00 3.62
932 3879 0.113776 ACAGTACTCCCTCCGTTCCA 59.886 55.000 0.00 0.00 0.00 3.53
933 3880 1.263356 CAGTACTCCCTCCGTTCCAA 58.737 55.000 0.00 0.00 0.00 3.53
934 3881 1.621814 CAGTACTCCCTCCGTTCCAAA 59.378 52.381 0.00 0.00 0.00 3.28
935 3882 2.236395 CAGTACTCCCTCCGTTCCAAAT 59.764 50.000 0.00 0.00 0.00 2.32
936 3883 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
937 3884 4.081309 CAGTACTCCCTCCGTTCCAAATTA 60.081 45.833 0.00 0.00 0.00 1.40
938 3885 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
939 3886 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
940 3887 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
941 3888 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
942 3889 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
943 3890 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
944 3891 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
945 3892 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
946 3893 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
947 3894 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
948 3895 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
949 3896 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
950 3897 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
951 3898 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
952 3899 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
953 3900 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
954 3901 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
955 3902 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
956 3903 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
957 3904 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
958 3905 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
959 3906 7.763172 TTACTCGTCGTGGTTTTAGTTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
960 3907 6.849588 ACTCGTCGTGGTTTTAGTTTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
961 3908 7.250445 ACTCGTCGTGGTTTTAGTTTAAATT 57.750 32.000 0.00 0.00 0.00 1.82
962 3909 7.696755 ACTCGTCGTGGTTTTAGTTTAAATTT 58.303 30.769 0.00 0.00 0.00 1.82
963 3910 7.641020 ACTCGTCGTGGTTTTAGTTTAAATTTG 59.359 33.333 0.00 0.00 0.00 2.32
964 3911 7.692088 TCGTCGTGGTTTTAGTTTAAATTTGA 58.308 30.769 0.00 0.00 0.00 2.69
965 3912 8.180267 TCGTCGTGGTTTTAGTTTAAATTTGAA 58.820 29.630 0.00 0.00 0.00 2.69
966 3913 8.254470 CGTCGTGGTTTTAGTTTAAATTTGAAC 58.746 33.333 15.93 15.93 0.00 3.18
967 3914 9.292846 GTCGTGGTTTTAGTTTAAATTTGAACT 57.707 29.630 25.84 25.84 39.80 3.01
978 3925 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
979 3926 7.895582 TTAAATTTGAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
980 3927 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
981 3928 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
982 3929 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
983 3930 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
984 3931 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
985 3932 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
986 3933 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
987 3934 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
988 3935 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
989 3936 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
990 3937 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
991 3938 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
992 3939 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
993 3940 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
994 3941 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
995 3942 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
996 3943 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
997 3944 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
998 3945 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
999 3946 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1004 3951 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
1018 3965 3.039011 GGAGTAGATAGCAAGAACCCCA 58.961 50.000 0.00 0.00 0.00 4.96
1272 4239 6.039493 GGAGTGATTCGATCAGGTAGAAGTAA 59.961 42.308 0.00 0.00 40.53 2.24
1566 4541 1.373497 CGCGAGCTGGAACTTCACT 60.373 57.895 0.00 0.00 0.00 3.41
1578 4553 0.981183 ACTTCACTTCGGCCATACCA 59.019 50.000 2.24 0.00 39.03 3.25
1789 4782 1.685765 CTCTCCACCGTCATCCCCA 60.686 63.158 0.00 0.00 0.00 4.96
1794 4787 3.402681 ACCGTCATCCCCAGCCTG 61.403 66.667 0.00 0.00 0.00 4.85
1844 4879 8.176814 CAAATAAATTTGTGGTAGCATCACTG 57.823 34.615 0.00 0.00 41.58 3.66
1867 4906 2.090400 TCAGCAGTTAAGCTCAGCAG 57.910 50.000 0.00 0.00 44.54 4.24
1888 4967 4.625311 CAGTGACCAAATTAATTTTCCGCC 59.375 41.667 10.77 0.57 0.00 6.13
1903 4982 2.440980 GCCCAGATGGACAAGGCC 60.441 66.667 0.00 0.00 37.66 5.19
2016 5104 0.037232 GTGCTAGTGAAGAGGCCGTT 60.037 55.000 0.00 0.00 0.00 4.44
2177 5293 1.674651 GACGGCAAAGGGGTCCTTC 60.675 63.158 0.00 0.00 43.92 3.46
2299 5415 1.604278 GCAAGTTCACCACTTCACTCC 59.396 52.381 0.00 0.00 44.60 3.85
2314 5441 5.122396 ACTTCACTCCGCACATTTTCTTATC 59.878 40.000 0.00 0.00 0.00 1.75
2362 5495 9.979578 ATATAAGATGTTTTTGCAGTTCAAACA 57.020 25.926 14.27 14.27 43.76 2.83
2365 5498 5.989551 ATGTTTTTGCAGTTCAAACATCC 57.010 34.783 16.54 0.00 44.23 3.51
2367 5500 6.214191 TGTTTTTGCAGTTCAAACATCCTA 57.786 33.333 10.02 0.00 43.76 2.94
2513 5830 3.895232 ACCTCACTTGAATCGTAGCAT 57.105 42.857 0.00 0.00 0.00 3.79
2560 5877 7.003939 TGCATTATAATCAAAGACACTCACG 57.996 36.000 0.00 0.00 0.00 4.35
2565 5882 8.683550 TTATAATCAAAGACACTCACGTACAG 57.316 34.615 0.00 0.00 0.00 2.74
2566 5883 4.585955 ATCAAAGACACTCACGTACAGT 57.414 40.909 0.00 0.00 0.00 3.55
2568 5885 2.682952 AAGACACTCACGTACAGTCG 57.317 50.000 0.00 0.00 34.56 4.18
2592 5914 9.476202 TCGTACACTCATTCCTATGAATAAATG 57.524 33.333 0.00 0.00 40.17 2.32
2661 5991 1.271597 GGTCTGCCTTCACCACAAGAT 60.272 52.381 0.00 0.00 32.33 2.40
2677 6007 6.213600 ACCACAAGATAACTAACCATCTGAGT 59.786 38.462 0.00 0.00 31.87 3.41
2710 6040 3.925299 TCGCAATTGCCACAAATGTTATG 59.075 39.130 24.24 5.86 37.91 1.90
2722 6052 9.579768 GCCACAAATGTTATGTGTATATTCAAA 57.420 29.630 5.99 0.00 45.23 2.69
2799 6129 8.849168 TGATGAATAAACTTGATCAACAACACT 58.151 29.630 3.38 0.00 34.56 3.55
2831 6161 2.866156 CACGCCCACATATACTGTTGAG 59.134 50.000 0.00 0.00 35.29 3.02
2841 6172 7.201644 CCACATATACTGTTGAGCAAACCTTAG 60.202 40.741 0.41 0.00 38.06 2.18
2877 6393 8.394877 CGTCAACCATATTAAACTTAAGCATCA 58.605 33.333 1.29 0.00 0.00 3.07
3037 6563 3.793144 GACTCTGCTTTGCGCCGG 61.793 66.667 4.18 0.00 38.05 6.13
3099 6633 5.240623 ACCAATAAACATGAAGACGCAAAGA 59.759 36.000 0.00 0.00 0.00 2.52
3107 6642 5.934625 ACATGAAGACGCAAAGACTTAAGAT 59.065 36.000 10.09 0.00 35.13 2.40
3150 6685 8.337532 TCATGTCGAATTAGCATGTTCAATTAG 58.662 33.333 16.33 0.00 40.40 1.73
3151 6686 7.609760 TGTCGAATTAGCATGTTCAATTAGT 57.390 32.000 0.00 0.00 0.00 2.24
3152 6687 7.463544 TGTCGAATTAGCATGTTCAATTAGTG 58.536 34.615 0.00 0.00 0.00 2.74
3153 6688 7.119116 TGTCGAATTAGCATGTTCAATTAGTGT 59.881 33.333 0.00 0.00 0.00 3.55
3157 6692 7.686438 ATTAGCATGTTCAATTAGTGTGTGA 57.314 32.000 0.00 0.00 0.00 3.58
3217 6762 0.652592 GAATCTCGGGCACATGTTCG 59.347 55.000 0.00 0.75 0.00 3.95
3281 6855 0.745845 ACAGCATCAGGGCGTTGATC 60.746 55.000 0.70 0.00 35.67 2.92
3294 6868 2.677836 GCGTTGATCCTTTAGCATGTCA 59.322 45.455 0.00 0.00 0.00 3.58
3320 6975 0.461548 TCTCGTGTCATGCTCCATCC 59.538 55.000 0.00 0.00 0.00 3.51
3397 7090 7.839680 TTCACTCTGCATATTAGGTCATCTA 57.160 36.000 0.00 0.00 0.00 1.98
3433 7126 5.904362 AATCAACAATTCTTCTACAGGGC 57.096 39.130 0.00 0.00 0.00 5.19
3446 7139 0.400213 ACAGGGCTCATTCGGTTTGA 59.600 50.000 0.00 0.00 0.00 2.69
3478 7171 8.752766 TCAAAACGTAGGAATTAGAAGTAGTG 57.247 34.615 0.00 0.00 0.00 2.74
3497 7190 7.220030 AGTAGTGTAGGATTTTGATAGCATGG 58.780 38.462 0.00 0.00 0.00 3.66
3527 7220 3.439857 TGCTAAGGAATTGACTTGCCT 57.560 42.857 2.97 0.00 0.00 4.75
3533 7226 3.222603 AGGAATTGACTTGCCTCGTTTT 58.777 40.909 0.00 0.00 0.00 2.43
3537 7230 6.015434 AGGAATTGACTTGCCTCGTTTTTATT 60.015 34.615 0.00 0.00 0.00 1.40
3539 7232 5.759506 TTGACTTGCCTCGTTTTTATTCA 57.240 34.783 0.00 0.00 0.00 2.57
3549 7242 8.519526 TGCCTCGTTTTTATTCATAAAATGAGT 58.480 29.630 20.25 4.26 46.91 3.41
3566 7259 7.581213 AAATGAGTTTTGAGTGGATGTGTAA 57.419 32.000 0.00 0.00 0.00 2.41
3573 7266 8.352942 AGTTTTGAGTGGATGTGTAATTTTCTC 58.647 33.333 0.00 0.00 0.00 2.87
3574 7267 6.817765 TTGAGTGGATGTGTAATTTTCTCC 57.182 37.500 0.00 0.00 0.00 3.71
3647 7341 9.500785 TTCATACAAATCGGATGCATCTATAAA 57.499 29.630 25.28 4.28 0.00 1.40
3681 7377 9.760660 CTAGAATCCTTGTTTCTATGTTTTTCG 57.239 33.333 0.00 0.00 35.67 3.46
3696 7393 6.885952 TGTTTTTCGTATGAAATCCTCCAA 57.114 33.333 10.85 0.00 43.32 3.53
3718 8372 3.763057 ACCAAACTAGGCCTAAAGTTGG 58.237 45.455 30.06 30.06 36.12 3.77
3756 8413 2.113139 ACGTCCAAGTTGGCAGGG 59.887 61.111 17.68 8.20 37.47 4.45
3776 8433 1.009829 CAGGCCAAAGCTCGATACAC 58.990 55.000 5.01 0.00 39.73 2.90
3792 8709 7.063934 TCGATACACTAAGAGGAGTATCAGA 57.936 40.000 15.51 12.16 41.65 3.27
3804 8790 0.708370 GTATCAGACACACACGCACG 59.292 55.000 0.00 0.00 0.00 5.34
3807 8793 2.961721 AGACACACACGCACGCAG 60.962 61.111 0.00 0.00 0.00 5.18
3809 8795 2.932083 GACACACACGCACGCAGAG 61.932 63.158 0.00 0.00 0.00 3.35
3851 8837 2.422597 CACCCTGCTCACGAACAATAA 58.577 47.619 0.00 0.00 0.00 1.40
3858 9963 5.580691 CCTGCTCACGAACAATAATAGTGAA 59.419 40.000 0.00 0.00 40.68 3.18
3890 10005 2.848679 TGCTGCTCTGGGTGTGGA 60.849 61.111 0.00 0.00 0.00 4.02
3904 10019 1.864565 TGTGGATGAACACACACGAG 58.135 50.000 0.00 0.00 45.70 4.18
3905 10020 1.410882 TGTGGATGAACACACACGAGA 59.589 47.619 0.00 0.00 45.70 4.04
3906 10021 2.037121 TGTGGATGAACACACACGAGAT 59.963 45.455 0.00 0.00 45.70 2.75
3929 10044 2.158798 AGATCGATCGGGTACACTCTCA 60.159 50.000 19.33 0.00 0.00 3.27
4144 10272 2.348620 AGCGGTCATGCAGCTCAA 59.651 55.556 8.47 0.00 45.26 3.02
4204 10335 3.433306 TTTGTAGTGTGGCCTAGCAAT 57.567 42.857 3.32 2.33 0.00 3.56
4205 10336 4.561500 TTTGTAGTGTGGCCTAGCAATA 57.438 40.909 3.32 1.27 0.00 1.90
4206 10337 3.819564 TGTAGTGTGGCCTAGCAATAG 57.180 47.619 3.32 0.00 0.00 1.73
4207 10338 2.158957 TGTAGTGTGGCCTAGCAATAGC 60.159 50.000 3.32 1.10 42.56 2.97
4208 10339 0.911769 AGTGTGGCCTAGCAATAGCA 59.088 50.000 3.32 0.00 45.49 3.49
4209 10340 1.492176 AGTGTGGCCTAGCAATAGCAT 59.508 47.619 3.32 0.00 45.49 3.79
4210 10341 1.605710 GTGTGGCCTAGCAATAGCATG 59.394 52.381 3.32 0.00 45.49 4.06
4211 10342 1.242076 GTGGCCTAGCAATAGCATGG 58.758 55.000 3.32 0.00 45.49 3.66
4212 10343 0.846015 TGGCCTAGCAATAGCATGGT 59.154 50.000 3.32 1.62 45.49 3.55
4213 10344 1.215173 TGGCCTAGCAATAGCATGGTT 59.785 47.619 3.32 0.00 45.49 3.67
4214 10345 1.882623 GGCCTAGCAATAGCATGGTTC 59.117 52.381 1.12 0.00 45.49 3.62
4215 10346 1.532868 GCCTAGCAATAGCATGGTTCG 59.467 52.381 1.12 0.00 45.49 3.95
4216 10347 2.838736 CCTAGCAATAGCATGGTTCGT 58.161 47.619 1.12 0.00 45.49 3.85
4217 10348 2.545526 CCTAGCAATAGCATGGTTCGTG 59.454 50.000 1.12 0.08 45.49 4.35
4218 10349 0.734889 AGCAATAGCATGGTTCGTGC 59.265 50.000 15.39 15.39 45.65 5.34
4223 10354 2.562912 GCATGGTTCGTGCACTGG 59.437 61.111 16.19 0.00 44.78 4.00
4224 10355 2.562912 CATGGTTCGTGCACTGGC 59.437 61.111 16.19 4.10 41.68 4.85
4234 10365 4.961511 GCACTGGCACGACCACGA 62.962 66.667 0.00 0.00 46.36 4.35
4235 10366 2.734723 CACTGGCACGACCACGAG 60.735 66.667 0.00 0.00 46.36 4.18
4236 10367 3.224324 ACTGGCACGACCACGAGT 61.224 61.111 0.00 0.00 46.36 4.18
4237 10368 1.900016 ACTGGCACGACCACGAGTA 60.900 57.895 0.00 0.00 46.36 2.59
4238 10369 1.154016 CTGGCACGACCACGAGTAG 60.154 63.158 0.00 0.00 46.36 2.57
4239 10370 1.863662 CTGGCACGACCACGAGTAGT 61.864 60.000 0.00 0.00 46.36 2.73
4240 10371 0.606130 TGGCACGACCACGAGTAGTA 60.606 55.000 0.00 0.00 46.36 1.82
4241 10372 0.737219 GGCACGACCACGAGTAGTAT 59.263 55.000 0.00 0.00 42.66 2.12
4242 10373 1.533338 GGCACGACCACGAGTAGTATG 60.533 57.143 0.00 0.00 42.66 2.39
4243 10374 1.131883 GCACGACCACGAGTAGTATGT 59.868 52.381 0.00 0.00 42.66 2.29
4244 10375 2.790468 GCACGACCACGAGTAGTATGTC 60.790 54.545 0.00 0.00 42.66 3.06
4245 10376 2.012673 ACGACCACGAGTAGTATGTCC 58.987 52.381 0.00 0.00 42.66 4.02
4246 10377 1.004185 CGACCACGAGTAGTATGTCCG 60.004 57.143 0.00 0.00 42.66 4.79
4247 10378 2.283298 GACCACGAGTAGTATGTCCGA 58.717 52.381 0.00 0.00 31.41 4.55
4248 10379 2.286872 ACCACGAGTAGTATGTCCGAG 58.713 52.381 0.00 0.00 0.00 4.63
4249 10380 1.602851 CCACGAGTAGTATGTCCGAGG 59.397 57.143 0.00 0.00 0.00 4.63
4250 10381 2.558378 CACGAGTAGTATGTCCGAGGA 58.442 52.381 0.00 0.00 0.00 3.71
4251 10382 2.287373 CACGAGTAGTATGTCCGAGGAC 59.713 54.545 14.98 14.98 44.77 3.85
4261 10392 2.030562 CCGAGGACAACGGCAACT 59.969 61.111 0.00 0.00 43.74 3.16
4262 10393 1.290955 CCGAGGACAACGGCAACTA 59.709 57.895 0.00 0.00 43.74 2.24
4263 10394 0.320073 CCGAGGACAACGGCAACTAA 60.320 55.000 0.00 0.00 43.74 2.24
4264 10395 1.504359 CGAGGACAACGGCAACTAAA 58.496 50.000 0.00 0.00 0.00 1.85
4265 10396 1.868498 CGAGGACAACGGCAACTAAAA 59.132 47.619 0.00 0.00 0.00 1.52
4266 10397 2.349155 CGAGGACAACGGCAACTAAAAC 60.349 50.000 0.00 0.00 0.00 2.43
4267 10398 2.876550 GAGGACAACGGCAACTAAAACT 59.123 45.455 0.00 0.00 0.00 2.66
4268 10399 2.876550 AGGACAACGGCAACTAAAACTC 59.123 45.455 0.00 0.00 0.00 3.01
4269 10400 2.349155 GGACAACGGCAACTAAAACTCG 60.349 50.000 0.00 0.00 0.00 4.18
4270 10401 2.282407 ACAACGGCAACTAAAACTCGT 58.718 42.857 0.00 0.00 0.00 4.18
4271 10402 2.031191 ACAACGGCAACTAAAACTCGTG 59.969 45.455 0.00 0.00 0.00 4.35
4272 10403 0.584876 ACGGCAACTAAAACTCGTGC 59.415 50.000 0.00 0.00 0.00 5.34
4273 10404 0.450482 CGGCAACTAAAACTCGTGCG 60.450 55.000 0.00 0.00 0.00 5.34
4274 10405 0.863144 GGCAACTAAAACTCGTGCGA 59.137 50.000 0.00 0.00 0.00 5.10
4275 10406 1.398071 GGCAACTAAAACTCGTGCGAC 60.398 52.381 0.00 0.00 0.00 5.19
4276 10407 1.259507 GCAACTAAAACTCGTGCGACA 59.740 47.619 0.00 0.00 0.00 4.35
4277 10408 2.096417 GCAACTAAAACTCGTGCGACAT 60.096 45.455 0.00 0.00 0.00 3.06
4278 10409 3.469629 CAACTAAAACTCGTGCGACATG 58.530 45.455 0.00 0.00 0.00 3.21
4279 10410 2.750948 ACTAAAACTCGTGCGACATGT 58.249 42.857 0.00 0.00 0.00 3.21
4280 10411 3.904571 ACTAAAACTCGTGCGACATGTA 58.095 40.909 0.00 0.00 0.00 2.29
4281 10412 3.918591 ACTAAAACTCGTGCGACATGTAG 59.081 43.478 0.00 0.00 0.00 2.74
4282 10413 1.068474 AAACTCGTGCGACATGTAGC 58.932 50.000 22.40 22.40 0.00 3.58
4283 10414 0.243907 AACTCGTGCGACATGTAGCT 59.756 50.000 27.69 8.02 32.26 3.32
4284 10415 0.243907 ACTCGTGCGACATGTAGCTT 59.756 50.000 27.69 7.84 32.26 3.74
4285 10416 0.917259 CTCGTGCGACATGTAGCTTC 59.083 55.000 27.69 19.73 32.26 3.86
4286 10417 0.796870 TCGTGCGACATGTAGCTTCG 60.797 55.000 27.69 27.54 35.82 3.79
4287 10418 0.796870 CGTGCGACATGTAGCTTCGA 60.797 55.000 28.46 12.16 34.62 3.71
4288 10419 0.917259 GTGCGACATGTAGCTTCGAG 59.083 55.000 27.69 1.96 34.62 4.04
4289 10420 0.802222 TGCGACATGTAGCTTCGAGC 60.802 55.000 27.69 11.01 42.84 5.03
4290 10421 1.483424 GCGACATGTAGCTTCGAGCC 61.483 60.000 21.98 0.00 43.77 4.70
4291 10422 0.872021 CGACATGTAGCTTCGAGCCC 60.872 60.000 0.00 0.00 43.77 5.19
4292 10423 0.175760 GACATGTAGCTTCGAGCCCA 59.824 55.000 0.00 2.43 43.77 5.36
4293 10424 0.613260 ACATGTAGCTTCGAGCCCAA 59.387 50.000 0.00 0.00 43.77 4.12
4294 10425 1.210478 ACATGTAGCTTCGAGCCCAAT 59.790 47.619 0.00 0.00 43.77 3.16
4295 10426 2.434336 ACATGTAGCTTCGAGCCCAATA 59.566 45.455 0.00 0.00 43.77 1.90
4296 10427 3.118408 ACATGTAGCTTCGAGCCCAATAA 60.118 43.478 0.00 0.00 43.77 1.40
4297 10428 3.838244 TGTAGCTTCGAGCCCAATAAT 57.162 42.857 0.00 0.00 43.77 1.28
4298 10429 3.728845 TGTAGCTTCGAGCCCAATAATC 58.271 45.455 0.00 0.00 43.77 1.75
4299 10430 3.388024 TGTAGCTTCGAGCCCAATAATCT 59.612 43.478 0.00 0.00 43.77 2.40
4300 10431 2.843701 AGCTTCGAGCCCAATAATCTG 58.156 47.619 3.66 0.00 43.77 2.90
4301 10432 2.171448 AGCTTCGAGCCCAATAATCTGT 59.829 45.455 3.66 0.00 43.77 3.41
4302 10433 2.289002 GCTTCGAGCCCAATAATCTGTG 59.711 50.000 0.00 0.00 34.48 3.66
4303 10434 1.953559 TCGAGCCCAATAATCTGTGC 58.046 50.000 0.00 0.00 0.00 4.57
4304 10435 1.209261 TCGAGCCCAATAATCTGTGCA 59.791 47.619 0.00 0.00 0.00 4.57
4305 10436 1.331756 CGAGCCCAATAATCTGTGCAC 59.668 52.381 10.75 10.75 0.00 4.57
4306 10437 2.648059 GAGCCCAATAATCTGTGCACT 58.352 47.619 19.41 0.00 0.00 4.40
4307 10438 3.019564 GAGCCCAATAATCTGTGCACTT 58.980 45.455 19.41 6.73 0.00 3.16
4308 10439 2.756760 AGCCCAATAATCTGTGCACTTG 59.243 45.455 19.41 12.43 0.00 3.16
4309 10440 2.493278 GCCCAATAATCTGTGCACTTGT 59.507 45.455 19.41 0.00 0.00 3.16
4310 10441 3.674138 GCCCAATAATCTGTGCACTTGTG 60.674 47.826 19.41 5.43 0.00 3.33
4311 10442 3.507233 CCCAATAATCTGTGCACTTGTGT 59.493 43.478 19.41 2.21 0.00 3.72
4312 10443 4.478699 CCAATAATCTGTGCACTTGTGTG 58.521 43.478 19.41 7.38 46.37 3.82
4313 10444 4.022935 CCAATAATCTGTGCACTTGTGTGT 60.023 41.667 19.41 0.00 45.44 3.72
4314 10445 4.754372 ATAATCTGTGCACTTGTGTGTG 57.246 40.909 19.41 0.00 45.44 3.82
4320 10451 2.053116 CACTTGTGTGTGCGCGTC 60.053 61.111 8.43 0.00 39.24 5.19
4321 10452 3.269347 ACTTGTGTGTGCGCGTCC 61.269 61.111 8.43 0.00 0.00 4.79
4322 10453 4.354212 CTTGTGTGTGCGCGTCCG 62.354 66.667 8.43 0.00 37.57 4.79
4343 10474 4.115199 GTAGGTGGCCAGCCCCAG 62.115 72.222 30.76 0.00 35.05 4.45
4349 10480 4.496336 GGCCAGCCCCAGCACTAG 62.496 72.222 0.00 0.00 43.56 2.57
4350 10481 3.721706 GCCAGCCCCAGCACTAGT 61.722 66.667 0.00 0.00 43.56 2.57
4351 10482 2.367202 GCCAGCCCCAGCACTAGTA 61.367 63.158 0.00 0.00 43.56 1.82
4352 10483 1.522569 CCAGCCCCAGCACTAGTAC 59.477 63.158 0.00 0.00 43.56 2.73
4353 10484 0.978146 CCAGCCCCAGCACTAGTACT 60.978 60.000 0.00 0.00 43.56 2.73
4354 10485 1.688311 CCAGCCCCAGCACTAGTACTA 60.688 57.143 1.89 1.89 43.56 1.82
4355 10486 1.683917 CAGCCCCAGCACTAGTACTAG 59.316 57.143 25.30 25.30 43.56 2.57
4356 10487 0.389757 GCCCCAGCACTAGTACTAGC 59.610 60.000 26.54 16.35 39.53 3.42
4357 10488 2.030045 GCCCCAGCACTAGTACTAGCT 61.030 57.143 26.54 18.21 39.53 3.32
4358 10489 2.389715 CCCCAGCACTAGTACTAGCTT 58.610 52.381 26.54 11.72 36.66 3.74
4359 10490 2.101582 CCCCAGCACTAGTACTAGCTTG 59.898 54.545 26.54 19.57 36.66 4.01
4360 10491 2.761208 CCCAGCACTAGTACTAGCTTGT 59.239 50.000 26.54 6.00 36.66 3.16
4361 10492 3.195825 CCCAGCACTAGTACTAGCTTGTT 59.804 47.826 26.54 15.03 36.66 2.83
4362 10493 4.177026 CCAGCACTAGTACTAGCTTGTTG 58.823 47.826 26.54 23.30 36.66 3.33
4363 10494 3.614616 CAGCACTAGTACTAGCTTGTTGC 59.385 47.826 26.54 25.36 43.29 4.17
4364 10495 3.258372 AGCACTAGTACTAGCTTGTTGCA 59.742 43.478 29.43 0.97 45.94 4.08
4365 10496 3.994392 GCACTAGTACTAGCTTGTTGCAA 59.006 43.478 26.54 0.00 45.94 4.08
4366 10497 4.092091 GCACTAGTACTAGCTTGTTGCAAG 59.908 45.833 26.54 4.72 45.94 4.01
4367 10498 5.230942 CACTAGTACTAGCTTGTTGCAAGT 58.769 41.667 26.54 5.35 45.94 3.16
4368 10499 5.119279 CACTAGTACTAGCTTGTTGCAAGTG 59.881 44.000 26.54 13.37 45.94 3.16
4369 10500 3.403038 AGTACTAGCTTGTTGCAAGTGG 58.597 45.455 6.03 0.00 45.94 4.00
4370 10501 2.638480 ACTAGCTTGTTGCAAGTGGA 57.362 45.000 0.00 0.00 45.94 4.02
4371 10502 2.222027 ACTAGCTTGTTGCAAGTGGAC 58.778 47.619 0.00 0.00 45.94 4.02
4372 10503 2.221169 CTAGCTTGTTGCAAGTGGACA 58.779 47.619 0.00 0.00 45.94 4.02
4373 10504 1.027357 AGCTTGTTGCAAGTGGACAG 58.973 50.000 0.00 0.00 45.94 3.51
4374 10505 0.595825 GCTTGTTGCAAGTGGACAGC 60.596 55.000 0.00 0.00 42.31 4.40
4375 10506 1.027357 CTTGTTGCAAGTGGACAGCT 58.973 50.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.957395 CGCTGCCATCACTTTCTGGT 60.957 55.000 0.00 0.00 34.86 4.00
13 14 3.583383 GCGCTGCCATCACTTTCT 58.417 55.556 0.00 0.00 0.00 2.52
30 31 2.413765 GAGAGCGACGCCCTAAGG 59.586 66.667 17.79 0.00 0.00 2.69
33 34 2.516460 GAGGAGAGCGACGCCCTA 60.516 66.667 17.79 0.00 39.30 3.53
112 114 4.764823 ACCGAACAAAATCATAGGCTTTCA 59.235 37.500 0.00 0.00 0.00 2.69
124 126 2.413837 CGTCTCCTGACCGAACAAAAT 58.586 47.619 0.00 0.00 39.94 1.82
129 131 2.126031 GGCGTCTCCTGACCGAAC 60.126 66.667 0.00 0.00 39.94 3.95
130 132 1.541310 ATTGGCGTCTCCTGACCGAA 61.541 55.000 0.00 0.00 39.94 4.30
133 135 2.109126 GCATTGGCGTCTCCTGACC 61.109 63.158 0.00 0.00 39.94 4.02
166 168 2.577563 TCAAGATGATGCCTCAAGGGAA 59.422 45.455 0.00 0.00 39.60 3.97
170 172 4.673580 CGGTTTTCAAGATGATGCCTCAAG 60.674 45.833 0.00 0.00 34.37 3.02
204 206 0.674581 CCAGCCACATTGAAGCTCGA 60.675 55.000 0.00 0.00 33.70 4.04
213 215 1.588824 CGTGTGCATCCAGCCACATT 61.589 55.000 0.00 0.00 44.83 2.71
219 221 0.179181 CAATGTCGTGTGCATCCAGC 60.179 55.000 0.00 0.00 45.96 4.85
220 222 1.159285 ACAATGTCGTGTGCATCCAG 58.841 50.000 0.00 0.00 0.00 3.86
221 223 2.289382 ACTACAATGTCGTGTGCATCCA 60.289 45.455 0.00 0.00 32.75 3.41
222 224 2.346803 ACTACAATGTCGTGTGCATCC 58.653 47.619 0.00 0.00 32.75 3.51
223 225 3.641439 GACTACAATGTCGTGTGCATC 57.359 47.619 0.00 0.00 32.75 3.91
257 272 3.492383 CGACATCTGCACCAATATCACTC 59.508 47.826 0.00 0.00 0.00 3.51
272 287 1.827399 AACTGAACGCCCCGACATCT 61.827 55.000 0.00 0.00 0.00 2.90
288 2036 2.125673 CGCCACCGGATTCGAACT 60.126 61.111 9.46 0.00 39.00 3.01
289 2037 2.030958 AACGCCACCGGATTCGAAC 61.031 57.895 9.46 0.00 39.22 3.95
322 2070 6.798482 TGCTATTTTTGTCACCATCATCATC 58.202 36.000 0.00 0.00 0.00 2.92
335 2083 1.904287 TGCGACCCTGCTATTTTTGT 58.096 45.000 0.00 0.00 35.36 2.83
340 2088 0.392998 CCTGTTGCGACCCTGCTATT 60.393 55.000 0.45 0.00 35.36 1.73
346 2094 2.113243 GAAGGACCTGTTGCGACCCT 62.113 60.000 0.45 0.00 0.00 4.34
351 2099 1.069022 CACAATGAAGGACCTGTTGCG 60.069 52.381 12.17 2.64 0.00 4.85
355 2103 0.251341 GCCCACAATGAAGGACCTGT 60.251 55.000 0.00 0.00 0.00 4.00
368 2116 0.531974 GAACAAGTCGTCTGCCCACA 60.532 55.000 0.00 0.00 0.00 4.17
371 2119 0.951040 CAGGAACAAGTCGTCTGCCC 60.951 60.000 0.00 0.00 0.00 5.36
377 2125 0.104304 AACGCTCAGGAACAAGTCGT 59.896 50.000 0.00 0.00 31.91 4.34
380 2128 4.385825 TGAATTAACGCTCAGGAACAAGT 58.614 39.130 0.00 0.00 0.00 3.16
425 2173 4.285149 GCTATCGTTGCAGCCGCG 62.285 66.667 0.00 0.00 42.97 6.46
429 2177 1.368493 CGCATGCTATCGTTGCAGC 60.368 57.895 17.13 0.00 44.04 5.25
447 2195 1.149401 GGAGCCCTACTTGCCCATC 59.851 63.158 0.00 0.00 0.00 3.51
471 2219 4.566360 CCAAGTTTTACAAAGTGCCTTGTG 59.434 41.667 6.27 2.55 39.81 3.33
472 2220 4.221924 ACCAAGTTTTACAAAGTGCCTTGT 59.778 37.500 0.00 2.08 42.20 3.16
576 2324 3.023119 ACTCTTGAACACATGTTTGGCA 58.977 40.909 0.00 0.00 38.56 4.92
592 2340 5.306678 AGGACTCTGAAACAAGATCACTCTT 59.693 40.000 0.00 0.00 42.59 2.85
594 2342 5.146010 AGGACTCTGAAACAAGATCACTC 57.854 43.478 0.00 0.00 0.00 3.51
600 2348 3.383505 TCAACGAGGACTCTGAAACAAGA 59.616 43.478 0.00 0.00 0.00 3.02
620 2368 5.798125 TTTGCATATTTGTGTTCCCTTCA 57.202 34.783 0.00 0.00 0.00 3.02
697 2455 0.540923 AGCTCCACTCTTCCATGCTC 59.459 55.000 0.00 0.00 0.00 4.26
705 2463 3.070734 CACCATATGCTAGCTCCACTCTT 59.929 47.826 17.23 0.00 0.00 2.85
722 2486 1.290431 TGGCCCCATTTATCACACCAT 59.710 47.619 0.00 0.00 0.00 3.55
723 2487 0.707024 TGGCCCCATTTATCACACCA 59.293 50.000 0.00 0.00 0.00 4.17
733 2497 2.785269 TGAGAGATTACATGGCCCCATT 59.215 45.455 0.00 0.00 33.90 3.16
740 2504 5.885230 TGCTTTTGTGAGAGATTACATGG 57.115 39.130 0.00 0.00 0.00 3.66
771 3713 3.969312 CCATGATTATTTTTGGAGGCCCT 59.031 43.478 0.00 0.00 0.00 5.19
791 3733 1.777941 TGCATGCATGGCTTAATCCA 58.222 45.000 27.34 11.60 40.97 3.41
854 3796 1.339097 AGATACCCCTATCACGTGCC 58.661 55.000 11.67 0.00 32.36 5.01
899 3841 7.061688 AGGGAGTACTGTACTATAGGAAACAG 58.938 42.308 19.73 21.35 43.90 3.16
907 3849 5.455326 GGAACGGAGGGAGTACTGTACTATA 60.455 48.000 19.73 0.00 39.59 1.31
916 3863 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
917 3864 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
918 3865 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
919 3866 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
920 3867 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
921 3868 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
922 3869 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
923 3870 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
924 3871 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
925 3872 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
926 3873 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
927 3874 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
928 3875 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
929 3876 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
930 3877 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
931 3878 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
932 3879 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
933 3880 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
934 3881 7.945033 TTAAACTAAAACCACGACGAGTAAT 57.055 32.000 0.00 0.00 0.00 1.89
935 3882 7.763172 TTTAAACTAAAACCACGACGAGTAA 57.237 32.000 0.00 0.00 0.00 2.24
936 3883 7.945033 ATTTAAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
937 3884 6.849588 ATTTAAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
938 3885 7.851963 TCAAATTTAAACTAAAACCACGACGAG 59.148 33.333 0.00 0.00 0.00 4.18
939 3886 7.692088 TCAAATTTAAACTAAAACCACGACGA 58.308 30.769 0.00 0.00 0.00 4.20
940 3887 7.895582 TCAAATTTAAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
941 3888 9.292846 AGTTCAAATTTAAACTAAAACCACGAC 57.707 29.630 4.83 0.00 34.05 4.34
952 3899 9.292846 GTCGTGGTTTTAGTTCAAATTTAAACT 57.707 29.630 11.45 11.45 39.07 2.66
953 3900 8.254470 CGTCGTGGTTTTAGTTCAAATTTAAAC 58.746 33.333 0.00 0.00 0.00 2.01
954 3901 8.180267 TCGTCGTGGTTTTAGTTCAAATTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
955 3902 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
956 3903 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
957 3904 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
958 3905 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
959 3906 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
960 3907 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
961 3908 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
962 3909 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
963 3910 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
964 3911 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
965 3912 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
966 3913 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
967 3914 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
968 3915 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
969 3916 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
970 3917 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
971 3918 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
972 3919 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
973 3920 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
974 3921 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
975 3922 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
976 3923 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
977 3924 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
978 3925 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
979 3926 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
980 3927 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
981 3928 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
982 3929 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
983 3930 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
984 3931 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
985 3932 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
986 3933 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
987 3934 2.752154 GCTATCTACTCCCTCCGTTCCA 60.752 54.545 0.00 0.00 0.00 3.53
988 3935 1.887854 GCTATCTACTCCCTCCGTTCC 59.112 57.143 0.00 0.00 0.00 3.62
989 3936 2.584236 TGCTATCTACTCCCTCCGTTC 58.416 52.381 0.00 0.00 0.00 3.95
990 3937 2.750141 TGCTATCTACTCCCTCCGTT 57.250 50.000 0.00 0.00 0.00 4.44
991 3938 2.175069 TCTTGCTATCTACTCCCTCCGT 59.825 50.000 0.00 0.00 0.00 4.69
992 3939 2.865079 TCTTGCTATCTACTCCCTCCG 58.135 52.381 0.00 0.00 0.00 4.63
993 3940 3.322541 GGTTCTTGCTATCTACTCCCTCC 59.677 52.174 0.00 0.00 0.00 4.30
994 3941 3.322541 GGGTTCTTGCTATCTACTCCCTC 59.677 52.174 0.00 0.00 0.00 4.30
995 3942 3.310193 GGGTTCTTGCTATCTACTCCCT 58.690 50.000 0.00 0.00 0.00 4.20
996 3943 2.369203 GGGGTTCTTGCTATCTACTCCC 59.631 54.545 0.00 0.00 0.00 4.30
997 3944 3.039011 TGGGGTTCTTGCTATCTACTCC 58.961 50.000 0.00 0.00 0.00 3.85
998 3945 4.755266 TTGGGGTTCTTGCTATCTACTC 57.245 45.455 0.00 0.00 0.00 2.59
999 3946 4.324331 GGTTTGGGGTTCTTGCTATCTACT 60.324 45.833 0.00 0.00 0.00 2.57
1004 3951 1.431243 TGGGTTTGGGGTTCTTGCTAT 59.569 47.619 0.00 0.00 0.00 2.97
1018 3965 3.223589 GCACGGCTGGTTGGGTTT 61.224 61.111 0.00 0.00 0.00 3.27
1272 4239 3.532155 GCTCGATCTCCAGCCGGT 61.532 66.667 1.90 0.00 0.00 5.28
1374 4342 0.249573 GGAGTGACGACGGGAAAACA 60.250 55.000 0.00 0.00 0.00 2.83
1566 4541 2.270850 GGCTGTGGTATGGCCGAA 59.729 61.111 0.00 0.00 41.21 4.30
1578 4553 1.526917 GATAATGCTGGGCGGCTGT 60.527 57.895 9.56 0.00 0.00 4.40
1794 4787 6.146347 GTGTGAGAAATGTACAGACCTTCTTC 59.854 42.308 0.33 5.68 30.64 2.87
1844 4879 2.414825 GCTGAGCTTAACTGCTGAAGTC 59.585 50.000 0.00 0.00 44.17 3.01
1857 4892 2.283145 ATTTGGTCACTGCTGAGCTT 57.717 45.000 5.83 0.00 44.07 3.74
1867 4906 3.930229 GGGCGGAAAATTAATTTGGTCAC 59.070 43.478 14.04 5.63 0.00 3.67
1888 4967 1.379044 GGTGGCCTTGTCCATCTGG 60.379 63.158 3.32 0.00 38.57 3.86
1903 4982 2.452813 CGCGTCGGAAAGGATGGTG 61.453 63.158 0.00 0.00 0.00 4.17
2177 5293 3.175240 CTCGGCGAGCAACGTGAG 61.175 66.667 25.31 0.00 44.60 3.51
2299 5415 8.085296 AGGAGTCTATAGATAAGAAAATGTGCG 58.915 37.037 5.57 0.00 0.00 5.34
2361 5494 8.041323 ACTAACTCTGTACCAAAATGTAGGATG 58.959 37.037 0.00 0.00 0.00 3.51
2362 5495 8.147244 ACTAACTCTGTACCAAAATGTAGGAT 57.853 34.615 0.00 0.00 0.00 3.24
2364 5497 8.529476 AGTACTAACTCTGTACCAAAATGTAGG 58.471 37.037 0.00 0.00 40.61 3.18
2365 5498 9.924650 AAGTACTAACTCTGTACCAAAATGTAG 57.075 33.333 0.00 0.00 40.61 2.74
2367 5500 8.208903 ACAAGTACTAACTCTGTACCAAAATGT 58.791 33.333 0.00 0.00 40.61 2.71
2437 5584 8.085296 ACTAGAGTTACTGTCTTTCTTGACATG 58.915 37.037 0.00 0.00 44.66 3.21
2497 5814 4.273235 TGGCAATATGCTACGATTCAAGTG 59.727 41.667 2.00 0.00 44.28 3.16
2536 5853 6.593770 ACGTGAGTGTCTTTGATTATAATGCA 59.406 34.615 1.78 0.00 46.97 3.96
2537 5854 7.005062 ACGTGAGTGTCTTTGATTATAATGC 57.995 36.000 1.78 0.00 46.97 3.56
2560 5877 6.037940 TCATAGGAATGAGTGTACGACTGTAC 59.962 42.308 3.17 0.00 42.69 2.90
2565 5882 8.867112 TTTATTCATAGGAATGAGTGTACGAC 57.133 34.615 12.74 0.00 43.47 4.34
2566 5883 9.476202 CATTTATTCATAGGAATGAGTGTACGA 57.524 33.333 12.74 0.00 43.47 3.43
2592 5914 4.546570 GTTGGTGCTCACATTTTTCCTAC 58.453 43.478 2.21 0.00 0.00 3.18
2595 5921 2.393764 CGTTGGTGCTCACATTTTTCC 58.606 47.619 2.21 0.00 0.00 3.13
2636 5962 4.065110 GTGAAGGCAGACCACCAC 57.935 61.111 0.00 0.00 39.06 4.16
2643 5973 3.327757 AGTTATCTTGTGGTGAAGGCAGA 59.672 43.478 0.00 0.00 0.00 4.26
2647 5977 5.556915 TGGTTAGTTATCTTGTGGTGAAGG 58.443 41.667 0.00 0.00 0.00 3.46
2648 5978 7.065085 CAGATGGTTAGTTATCTTGTGGTGAAG 59.935 40.741 0.00 0.00 31.53 3.02
2650 5980 6.212589 TCAGATGGTTAGTTATCTTGTGGTGA 59.787 38.462 0.00 0.00 31.53 4.02
2677 6007 2.742053 GGCAATTGCGAACTGAGAGTAA 59.258 45.455 23.48 0.00 43.26 2.24
2772 6102 9.630098 GTGTTGTTGATCAAGTTTATTCATCAT 57.370 29.630 8.80 0.00 36.66 2.45
2773 6103 8.849168 AGTGTTGTTGATCAAGTTTATTCATCA 58.151 29.630 8.80 4.26 36.66 3.07
2799 6129 2.784347 TGTGGGCGTGAATCACAATTA 58.216 42.857 14.24 0.00 38.30 1.40
2804 6134 3.494626 CAGTATATGTGGGCGTGAATCAC 59.505 47.826 2.75 2.75 0.00 3.06
2831 6161 7.766219 TGACGATTATTAGTCTAAGGTTTGC 57.234 36.000 0.00 0.00 38.16 3.68
3001 6527 2.866762 GTCGAGCTTCCATACAATGTCC 59.133 50.000 0.00 0.00 0.00 4.02
3037 6563 0.101759 ATCATTTGCCGCTGTGATGC 59.898 50.000 5.35 0.00 30.61 3.91
3043 6569 3.059325 GCTAGAACTATCATTTGCCGCTG 60.059 47.826 0.00 0.00 0.00 5.18
3099 6633 3.248043 TGCTTGCCGCATCTTAAGT 57.752 47.368 1.63 0.00 45.47 2.24
3150 6685 1.775039 ATGCACGCACACTCACACAC 61.775 55.000 0.00 0.00 0.00 3.82
3151 6686 1.094650 AATGCACGCACACTCACACA 61.095 50.000 0.00 0.00 0.00 3.72
3152 6687 0.658244 CAATGCACGCACACTCACAC 60.658 55.000 0.00 0.00 0.00 3.82
3153 6688 1.094650 ACAATGCACGCACACTCACA 61.095 50.000 0.00 0.00 0.00 3.58
3157 6692 0.815213 ACTCACAATGCACGCACACT 60.815 50.000 0.00 0.00 0.00 3.55
3256 6801 0.105593 CGCCCTGATGCTGTAGTGAT 59.894 55.000 0.00 0.00 0.00 3.06
3281 6855 5.233902 CGAGAAAGATCTGACATGCTAAAGG 59.766 44.000 0.00 0.00 35.54 3.11
3294 6868 3.430098 GGAGCATGACACGAGAAAGATCT 60.430 47.826 0.00 0.00 39.10 2.75
3421 7114 1.757118 CCGAATGAGCCCTGTAGAAGA 59.243 52.381 0.00 0.00 0.00 2.87
3423 7116 1.568504 ACCGAATGAGCCCTGTAGAA 58.431 50.000 0.00 0.00 0.00 2.10
3428 7121 1.402968 CATCAAACCGAATGAGCCCTG 59.597 52.381 0.00 0.00 0.00 4.45
3433 7126 5.565592 TGATTTCCATCAAACCGAATGAG 57.434 39.130 0.00 0.00 36.41 2.90
3446 7139 8.801882 TCTAATTCCTACGTTTTGATTTCCAT 57.198 30.769 0.00 0.00 0.00 3.41
3463 7156 9.886132 TCAAAATCCTACACTACTTCTAATTCC 57.114 33.333 0.00 0.00 0.00 3.01
3478 7171 4.823989 AGTGCCATGCTATCAAAATCCTAC 59.176 41.667 0.00 0.00 0.00 3.18
3497 7190 4.156556 TCAATTCCTTAGCATGACAAGTGC 59.843 41.667 0.00 0.00 42.81 4.40
3508 7201 2.352960 CGAGGCAAGTCAATTCCTTAGC 59.647 50.000 0.00 0.00 0.00 3.09
3537 7230 8.298854 CACATCCACTCAAAACTCATTTTATGA 58.701 33.333 0.00 0.00 35.79 2.15
3539 7232 8.181904 ACACATCCACTCAAAACTCATTTTAT 57.818 30.769 0.00 0.00 35.79 1.40
3549 7242 7.286546 TGGAGAAAATTACACATCCACTCAAAA 59.713 33.333 0.00 0.00 32.04 2.44
3554 7247 7.595819 TTTTGGAGAAAATTACACATCCACT 57.404 32.000 0.00 0.00 36.60 4.00
3566 7259 9.500785 TTTCTTTTCTGTGTTTTTGGAGAAAAT 57.499 25.926 0.00 0.00 41.32 1.82
3616 7310 4.097589 TGCATCCGATTTGTATGAAATGCA 59.902 37.500 2.81 2.81 44.13 3.96
3662 7358 9.672086 TTTCATACGAAAAACATAGAAACAAGG 57.328 29.630 0.00 0.00 38.19 3.61
3681 7377 6.590234 AGTTTGGTTTGGAGGATTTCATAC 57.410 37.500 0.00 0.00 0.00 2.39
3684 7380 5.076873 CCTAGTTTGGTTTGGAGGATTTCA 58.923 41.667 0.00 0.00 0.00 2.69
3696 7393 4.149598 CCAACTTTAGGCCTAGTTTGGTT 58.850 43.478 26.63 18.82 32.50 3.67
3718 8372 1.466558 GCTACCTTTCTGCAGACAAGC 59.533 52.381 18.03 16.15 0.00 4.01
3756 8413 0.744414 TGTATCGAGCTTTGGCCTGC 60.744 55.000 3.32 6.04 39.73 4.85
3765 8422 4.159244 ACTCCTCTTAGTGTATCGAGCT 57.841 45.455 0.00 0.00 0.00 4.09
3776 8433 5.447954 CGTGTGTGTCTGATACTCCTCTTAG 60.448 48.000 6.12 0.00 0.00 2.18
3792 8709 2.899345 TTCTCTGCGTGCGTGTGTGT 62.899 55.000 0.00 0.00 0.00 3.72
3804 8790 1.895280 GCAGTGTCAGCGTTCTCTGC 61.895 60.000 13.01 13.01 41.48 4.26
3807 8793 1.560860 GGTGCAGTGTCAGCGTTCTC 61.561 60.000 0.00 0.00 33.85 2.87
3809 8795 2.939022 GGTGCAGTGTCAGCGTTC 59.061 61.111 0.00 0.00 33.85 3.95
3837 8823 6.907212 CCATTTCACTATTATTGTTCGTGAGC 59.093 38.462 0.00 0.00 36.17 4.26
3851 8837 4.690748 CACGTGAGTTGTCCATTTCACTAT 59.309 41.667 10.90 0.00 46.40 2.12
3858 9963 1.229428 CAGCACGTGAGTTGTCCATT 58.771 50.000 22.23 0.00 46.40 3.16
3890 10005 3.942130 TCTGATCTCGTGTGTGTTCAT 57.058 42.857 0.00 0.00 0.00 2.57
3905 10020 2.814919 GAGTGTACCCGATCGATCTGAT 59.185 50.000 22.43 6.38 41.06 2.90
3906 10021 2.158798 AGAGTGTACCCGATCGATCTGA 60.159 50.000 22.43 2.89 0.00 3.27
3929 10044 1.153005 GCCAGCTCTGCTTGCCTAT 60.153 57.895 4.55 0.00 40.72 2.57
4144 10272 3.768922 GGCCGAGTCAGCTGAGCT 61.769 66.667 18.89 16.97 40.77 4.09
4204 10335 0.673333 CCAGTGCACGAACCATGCTA 60.673 55.000 12.01 0.00 43.77 3.49
4205 10336 1.968017 CCAGTGCACGAACCATGCT 60.968 57.895 12.01 0.00 43.77 3.79
4206 10337 2.562912 CCAGTGCACGAACCATGC 59.437 61.111 12.01 0.00 43.68 4.06
4207 10338 2.260154 TGCCAGTGCACGAACCATG 61.260 57.895 12.01 2.62 44.23 3.66
4208 10339 2.112928 TGCCAGTGCACGAACCAT 59.887 55.556 12.01 0.00 44.23 3.55
4221 10352 0.606130 TACTACTCGTGGTCGTGCCA 60.606 55.000 0.00 0.00 46.95 4.92
4222 10353 0.737219 ATACTACTCGTGGTCGTGCC 59.263 55.000 0.00 0.00 38.33 5.01
4223 10354 1.131883 ACATACTACTCGTGGTCGTGC 59.868 52.381 0.00 0.00 38.33 5.34
4224 10355 2.223203 GGACATACTACTCGTGGTCGTG 60.223 54.545 0.00 0.00 38.33 4.35
4225 10356 2.012673 GGACATACTACTCGTGGTCGT 58.987 52.381 0.00 0.00 38.33 4.34
4226 10357 1.004185 CGGACATACTACTCGTGGTCG 60.004 57.143 0.00 0.00 34.18 4.79
4227 10358 2.283298 TCGGACATACTACTCGTGGTC 58.717 52.381 0.00 0.00 33.23 4.02
4228 10359 2.286872 CTCGGACATACTACTCGTGGT 58.713 52.381 0.00 0.00 0.00 4.16
4229 10360 1.602851 CCTCGGACATACTACTCGTGG 59.397 57.143 0.00 0.00 0.00 4.94
4230 10361 2.287373 GTCCTCGGACATACTACTCGTG 59.713 54.545 11.12 0.00 44.02 4.35
4231 10362 2.559440 GTCCTCGGACATACTACTCGT 58.441 52.381 11.12 0.00 44.02 4.18
4245 10376 1.504359 TTTAGTTGCCGTTGTCCTCG 58.496 50.000 0.00 0.00 0.00 4.63
4246 10377 2.876550 AGTTTTAGTTGCCGTTGTCCTC 59.123 45.455 0.00 0.00 0.00 3.71
4247 10378 2.876550 GAGTTTTAGTTGCCGTTGTCCT 59.123 45.455 0.00 0.00 0.00 3.85
4248 10379 2.349155 CGAGTTTTAGTTGCCGTTGTCC 60.349 50.000 0.00 0.00 0.00 4.02
4249 10380 2.286025 ACGAGTTTTAGTTGCCGTTGTC 59.714 45.455 0.00 0.00 0.00 3.18
4250 10381 2.031191 CACGAGTTTTAGTTGCCGTTGT 59.969 45.455 0.00 0.00 0.00 3.32
4251 10382 2.635444 CACGAGTTTTAGTTGCCGTTG 58.365 47.619 0.00 0.00 0.00 4.10
4252 10383 1.003223 GCACGAGTTTTAGTTGCCGTT 60.003 47.619 0.00 0.00 0.00 4.44
4253 10384 0.584876 GCACGAGTTTTAGTTGCCGT 59.415 50.000 0.00 0.00 0.00 5.68
4254 10385 0.450482 CGCACGAGTTTTAGTTGCCG 60.450 55.000 0.00 0.00 0.00 5.69
4255 10386 0.863144 TCGCACGAGTTTTAGTTGCC 59.137 50.000 0.00 0.00 0.00 4.52
4256 10387 1.259507 TGTCGCACGAGTTTTAGTTGC 59.740 47.619 0.00 0.00 0.00 4.17
4257 10388 3.059868 ACATGTCGCACGAGTTTTAGTTG 60.060 43.478 0.00 0.00 0.00 3.16
4258 10389 3.128349 ACATGTCGCACGAGTTTTAGTT 58.872 40.909 0.00 0.00 0.00 2.24
4259 10390 2.750948 ACATGTCGCACGAGTTTTAGT 58.249 42.857 0.00 0.00 0.00 2.24
4260 10391 3.241678 GCTACATGTCGCACGAGTTTTAG 60.242 47.826 16.83 0.00 0.00 1.85
4261 10392 2.664568 GCTACATGTCGCACGAGTTTTA 59.335 45.455 16.83 0.00 0.00 1.52
4262 10393 1.459592 GCTACATGTCGCACGAGTTTT 59.540 47.619 16.83 0.00 0.00 2.43
4263 10394 1.068474 GCTACATGTCGCACGAGTTT 58.932 50.000 16.83 0.00 0.00 2.66
4264 10395 0.243907 AGCTACATGTCGCACGAGTT 59.756 50.000 22.73 0.00 0.00 3.01
4265 10396 0.243907 AAGCTACATGTCGCACGAGT 59.756 50.000 22.73 0.34 0.00 4.18
4266 10397 0.917259 GAAGCTACATGTCGCACGAG 59.083 55.000 22.73 5.94 0.00 4.18
4267 10398 0.796870 CGAAGCTACATGTCGCACGA 60.797 55.000 25.34 0.65 32.94 4.35
4268 10399 0.796870 TCGAAGCTACATGTCGCACG 60.797 55.000 22.73 23.69 34.80 5.34
4269 10400 0.917259 CTCGAAGCTACATGTCGCAC 59.083 55.000 22.73 14.98 34.80 5.34
4270 10401 0.802222 GCTCGAAGCTACATGTCGCA 60.802 55.000 22.73 2.83 38.45 5.10
4271 10402 1.483424 GGCTCGAAGCTACATGTCGC 61.483 60.000 14.18 14.18 41.99 5.19
4272 10403 0.872021 GGGCTCGAAGCTACATGTCG 60.872 60.000 0.00 0.00 41.99 4.35
4273 10404 0.175760 TGGGCTCGAAGCTACATGTC 59.824 55.000 0.00 0.00 41.99 3.06
4274 10405 0.613260 TTGGGCTCGAAGCTACATGT 59.387 50.000 2.69 2.69 41.99 3.21
4275 10406 1.959042 ATTGGGCTCGAAGCTACATG 58.041 50.000 6.78 0.00 41.99 3.21
4276 10407 3.838244 TTATTGGGCTCGAAGCTACAT 57.162 42.857 6.78 0.89 41.99 2.29
4277 10408 3.388024 AGATTATTGGGCTCGAAGCTACA 59.612 43.478 6.78 4.50 41.99 2.74
4278 10409 3.743396 CAGATTATTGGGCTCGAAGCTAC 59.257 47.826 6.78 2.41 41.99 3.58
4279 10410 3.388024 ACAGATTATTGGGCTCGAAGCTA 59.612 43.478 6.78 0.00 41.99 3.32
4280 10411 2.171448 ACAGATTATTGGGCTCGAAGCT 59.829 45.455 6.78 0.00 41.99 3.74
4281 10412 2.289002 CACAGATTATTGGGCTCGAAGC 59.711 50.000 0.00 0.00 41.46 3.86
4282 10413 2.289002 GCACAGATTATTGGGCTCGAAG 59.711 50.000 0.00 0.00 44.12 3.79
4283 10414 2.288666 GCACAGATTATTGGGCTCGAA 58.711 47.619 0.00 0.00 44.12 3.71
4284 10415 1.953559 GCACAGATTATTGGGCTCGA 58.046 50.000 0.00 0.00 44.12 4.04
4289 10420 3.507233 ACACAAGTGCACAGATTATTGGG 59.493 43.478 21.04 16.51 0.00 4.12
4290 10421 4.478699 CACACAAGTGCACAGATTATTGG 58.521 43.478 21.04 9.72 39.21 3.16
4304 10435 3.269347 GGACGCGCACACACAAGT 61.269 61.111 5.73 0.00 0.00 3.16
4305 10436 4.354212 CGGACGCGCACACACAAG 62.354 66.667 5.73 0.00 0.00 3.16
4315 10446 4.824166 CACCTACGGACGGACGCG 62.824 72.222 3.53 3.53 37.37 6.01
4316 10447 4.487412 CCACCTACGGACGGACGC 62.487 72.222 0.77 0.00 37.37 5.19
4317 10448 4.487412 GCCACCTACGGACGGACG 62.487 72.222 0.00 0.00 40.31 4.79
4318 10449 4.139234 GGCCACCTACGGACGGAC 62.139 72.222 0.00 0.00 0.00 4.79
4319 10450 4.682334 TGGCCACCTACGGACGGA 62.682 66.667 0.00 0.00 36.54 4.69
4320 10451 4.143333 CTGGCCACCTACGGACGG 62.143 72.222 0.00 0.00 36.54 4.79
4321 10452 4.814294 GCTGGCCACCTACGGACG 62.814 72.222 0.00 0.00 36.54 4.79
4322 10453 4.468689 GGCTGGCCACCTACGGAC 62.469 72.222 0.00 0.00 35.81 4.79
4326 10457 4.115199 CTGGGGCTGGCCACCTAC 62.115 72.222 22.68 14.63 39.18 3.18
4332 10463 4.496336 CTAGTGCTGGGGCTGGCC 62.496 72.222 12.58 12.58 39.59 5.36
4333 10464 2.367202 TACTAGTGCTGGGGCTGGC 61.367 63.158 5.39 0.00 39.59 4.85
4334 10465 0.978146 AGTACTAGTGCTGGGGCTGG 60.978 60.000 13.15 0.00 39.59 4.85
4335 10466 1.683917 CTAGTACTAGTGCTGGGGCTG 59.316 57.143 22.20 3.38 39.59 4.85
4336 10467 2.030045 GCTAGTACTAGTGCTGGGGCT 61.030 57.143 26.76 0.00 35.18 5.19
4337 10468 0.389757 GCTAGTACTAGTGCTGGGGC 59.610 60.000 26.76 18.06 35.65 5.80
4338 10469 2.074729 AGCTAGTACTAGTGCTGGGG 57.925 55.000 26.76 13.13 35.65 4.96
4339 10470 2.761208 ACAAGCTAGTACTAGTGCTGGG 59.239 50.000 26.76 18.08 35.79 4.45
4340 10471 4.177026 CAACAAGCTAGTACTAGTGCTGG 58.823 47.826 26.76 20.09 35.79 4.85
4341 10472 3.614616 GCAACAAGCTAGTACTAGTGCTG 59.385 47.826 26.76 22.12 41.15 4.41
4342 10473 3.258372 TGCAACAAGCTAGTACTAGTGCT 59.742 43.478 28.46 20.91 45.94 4.40
4343 10474 3.585862 TGCAACAAGCTAGTACTAGTGC 58.414 45.455 26.76 25.69 45.94 4.40
4344 10475 5.769967 CTTGCAACAAGCTAGTACTAGTG 57.230 43.478 26.76 20.84 45.94 2.74
4353 10484 2.221169 CTGTCCACTTGCAACAAGCTA 58.779 47.619 7.23 0.00 45.94 3.32
4354 10485 1.027357 CTGTCCACTTGCAACAAGCT 58.973 50.000 7.23 0.00 45.94 3.74
4355 10486 0.595825 GCTGTCCACTTGCAACAAGC 60.596 55.000 7.23 0.00 45.96 4.01
4356 10487 1.027357 AGCTGTCCACTTGCAACAAG 58.973 50.000 5.80 5.80 0.00 3.16
4357 10488 3.189568 AGCTGTCCACTTGCAACAA 57.810 47.368 0.00 0.00 0.00 2.83
4358 10489 4.984194 AGCTGTCCACTTGCAACA 57.016 50.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.