Multiple sequence alignment - TraesCS5B01G518300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G518300 | chr5B | 100.000 | 2501 | 0 | 0 | 1 | 2501 | 681181789 | 681179289 | 0.000000e+00 | 4619.0 |
1 | TraesCS5B01G518300 | chr5B | 95.848 | 1156 | 42 | 4 | 875 | 2028 | 532363619 | 532364770 | 0.000000e+00 | 1864.0 |
2 | TraesCS5B01G518300 | chr5B | 96.552 | 725 | 21 | 2 | 875 | 1598 | 144592224 | 144591503 | 0.000000e+00 | 1197.0 |
3 | TraesCS5B01G518300 | chr5B | 89.130 | 138 | 13 | 2 | 2058 | 2195 | 681179623 | 681179488 | 1.190000e-38 | 171.0 |
4 | TraesCS5B01G518300 | chr5B | 89.130 | 138 | 13 | 2 | 2167 | 2302 | 681179732 | 681179595 | 1.190000e-38 | 171.0 |
5 | TraesCS5B01G518300 | chr5B | 75.130 | 386 | 36 | 29 | 2082 | 2434 | 657653524 | 657653166 | 2.610000e-25 | 126.0 |
6 | TraesCS5B01G518300 | chr5B | 85.039 | 127 | 13 | 5 | 2260 | 2384 | 12337066 | 12337188 | 9.390000e-25 | 124.0 |
7 | TraesCS5B01G518300 | chr4D | 93.546 | 1193 | 38 | 8 | 875 | 2034 | 175106199 | 175107385 | 0.000000e+00 | 1740.0 |
8 | TraesCS5B01G518300 | chr7B | 93.686 | 1172 | 54 | 4 | 883 | 2034 | 8966449 | 8967620 | 0.000000e+00 | 1736.0 |
9 | TraesCS5B01G518300 | chr7B | 95.022 | 683 | 17 | 3 | 1355 | 2035 | 83918512 | 83919179 | 0.000000e+00 | 1057.0 |
10 | TraesCS5B01G518300 | chr7B | 86.391 | 169 | 19 | 4 | 2051 | 2218 | 495000486 | 495000321 | 5.500000e-42 | 182.0 |
11 | TraesCS5B01G518300 | chr7B | 82.390 | 159 | 18 | 7 | 2113 | 2263 | 10761683 | 10761839 | 2.020000e-26 | 130.0 |
12 | TraesCS5B01G518300 | chr1A | 98.632 | 877 | 12 | 0 | 1 | 877 | 394598554 | 394599430 | 0.000000e+00 | 1554.0 |
13 | TraesCS5B01G518300 | chr1A | 96.552 | 725 | 21 | 2 | 875 | 1598 | 394599989 | 394600710 | 0.000000e+00 | 1197.0 |
14 | TraesCS5B01G518300 | chr1B | 98.518 | 877 | 13 | 0 | 1 | 877 | 70693259 | 70692383 | 0.000000e+00 | 1548.0 |
15 | TraesCS5B01G518300 | chr1B | 96.414 | 725 | 22 | 2 | 875 | 1598 | 70691824 | 70691103 | 0.000000e+00 | 1192.0 |
16 | TraesCS5B01G518300 | chr1B | 94.993 | 679 | 17 | 3 | 1358 | 2034 | 449256373 | 449255710 | 0.000000e+00 | 1050.0 |
17 | TraesCS5B01G518300 | chr1B | 77.778 | 261 | 40 | 15 | 2055 | 2302 | 356238440 | 356238695 | 7.210000e-31 | 145.0 |
18 | TraesCS5B01G518300 | chrUn | 98.404 | 877 | 14 | 0 | 1 | 877 | 278748569 | 278749445 | 0.000000e+00 | 1543.0 |
19 | TraesCS5B01G518300 | chr6A | 98.404 | 877 | 14 | 0 | 1 | 877 | 81878903 | 81878027 | 0.000000e+00 | 1543.0 |
20 | TraesCS5B01G518300 | chr6A | 98.176 | 877 | 16 | 0 | 1 | 877 | 539539853 | 539540729 | 0.000000e+00 | 1531.0 |
21 | TraesCS5B01G518300 | chr6A | 96.414 | 725 | 22 | 2 | 875 | 1598 | 68986903 | 68987624 | 0.000000e+00 | 1192.0 |
22 | TraesCS5B01G518300 | chr3B | 98.404 | 877 | 14 | 0 | 1 | 877 | 220779740 | 220780616 | 0.000000e+00 | 1543.0 |
23 | TraesCS5B01G518300 | chr3B | 98.290 | 877 | 15 | 0 | 1 | 877 | 565442736 | 565441860 | 0.000000e+00 | 1537.0 |
24 | TraesCS5B01G518300 | chr3B | 98.176 | 877 | 16 | 0 | 1 | 877 | 217965601 | 217964725 | 0.000000e+00 | 1531.0 |
25 | TraesCS5B01G518300 | chr3B | 93.571 | 1011 | 62 | 3 | 875 | 1884 | 123987270 | 123988278 | 0.000000e+00 | 1504.0 |
26 | TraesCS5B01G518300 | chr3B | 96.414 | 725 | 22 | 3 | 875 | 1598 | 217969105 | 217969826 | 0.000000e+00 | 1192.0 |
27 | TraesCS5B01G518300 | chr3B | 77.333 | 225 | 38 | 10 | 2113 | 2327 | 59465974 | 59466195 | 1.220000e-23 | 121.0 |
28 | TraesCS5B01G518300 | chr3B | 92.105 | 76 | 6 | 0 | 2035 | 2110 | 599087811 | 599087886 | 9.460000e-20 | 108.0 |
29 | TraesCS5B01G518300 | chr7A | 98.062 | 877 | 17 | 0 | 1 | 877 | 594456285 | 594457161 | 0.000000e+00 | 1526.0 |
30 | TraesCS5B01G518300 | chr7A | 94.993 | 679 | 17 | 3 | 1358 | 2034 | 376617078 | 376616415 | 0.000000e+00 | 1050.0 |
31 | TraesCS5B01G518300 | chr5A | 95.140 | 679 | 16 | 3 | 1358 | 2034 | 695337329 | 695336666 | 0.000000e+00 | 1055.0 |
32 | TraesCS5B01G518300 | chr5A | 95.140 | 679 | 16 | 3 | 1358 | 2034 | 695361902 | 695361239 | 0.000000e+00 | 1055.0 |
33 | TraesCS5B01G518300 | chr5A | 84.916 | 179 | 20 | 7 | 2071 | 2248 | 451135075 | 451134903 | 9.200000e-40 | 174.0 |
34 | TraesCS5B01G518300 | chr4B | 95.015 | 682 | 17 | 3 | 1355 | 2034 | 316995573 | 316996239 | 0.000000e+00 | 1055.0 |
35 | TraesCS5B01G518300 | chr4A | 94.993 | 679 | 17 | 3 | 1358 | 2034 | 535867958 | 535867295 | 0.000000e+00 | 1050.0 |
36 | TraesCS5B01G518300 | chr4A | 81.333 | 300 | 44 | 11 | 2139 | 2434 | 604173613 | 604173322 | 1.500000e-57 | 233.0 |
37 | TraesCS5B01G518300 | chr6D | 88.166 | 169 | 16 | 4 | 2050 | 2218 | 365051010 | 365051174 | 5.460000e-47 | 198.0 |
38 | TraesCS5B01G518300 | chr7D | 80.579 | 242 | 33 | 9 | 2198 | 2434 | 555230552 | 555230784 | 9.200000e-40 | 174.0 |
39 | TraesCS5B01G518300 | chr7D | 80.583 | 206 | 30 | 9 | 2145 | 2347 | 192366197 | 192365999 | 1.550000e-32 | 150.0 |
40 | TraesCS5B01G518300 | chr5D | 81.188 | 202 | 29 | 8 | 2106 | 2302 | 283106545 | 283106348 | 1.200000e-33 | 154.0 |
41 | TraesCS5B01G518300 | chr5D | 82.682 | 179 | 22 | 9 | 2061 | 2234 | 548631608 | 548631782 | 1.550000e-32 | 150.0 |
42 | TraesCS5B01G518300 | chr1D | 78.814 | 236 | 34 | 14 | 2118 | 2347 | 487590943 | 487590718 | 7.210000e-31 | 145.0 |
43 | TraesCS5B01G518300 | chr2A | 89.535 | 86 | 6 | 3 | 2050 | 2134 | 89598660 | 89598743 | 3.400000e-19 | 106.0 |
44 | TraesCS5B01G518300 | chr2A | 97.222 | 36 | 0 | 1 | 2106 | 2141 | 758288372 | 758288338 | 2.690000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G518300 | chr5B | 681179289 | 681181789 | 2500 | True | 1653.666667 | 4619 | 92.753333 | 1 | 2501 | 3 | chr5B.!!$R3 | 2500 |
1 | TraesCS5B01G518300 | chr5B | 532363619 | 532364770 | 1151 | False | 1864.000000 | 1864 | 95.848000 | 875 | 2028 | 1 | chr5B.!!$F2 | 1153 |
2 | TraesCS5B01G518300 | chr5B | 144591503 | 144592224 | 721 | True | 1197.000000 | 1197 | 96.552000 | 875 | 1598 | 1 | chr5B.!!$R1 | 723 |
3 | TraesCS5B01G518300 | chr4D | 175106199 | 175107385 | 1186 | False | 1740.000000 | 1740 | 93.546000 | 875 | 2034 | 1 | chr4D.!!$F1 | 1159 |
4 | TraesCS5B01G518300 | chr7B | 8966449 | 8967620 | 1171 | False | 1736.000000 | 1736 | 93.686000 | 883 | 2034 | 1 | chr7B.!!$F1 | 1151 |
5 | TraesCS5B01G518300 | chr7B | 83918512 | 83919179 | 667 | False | 1057.000000 | 1057 | 95.022000 | 1355 | 2035 | 1 | chr7B.!!$F3 | 680 |
6 | TraesCS5B01G518300 | chr1A | 394598554 | 394600710 | 2156 | False | 1375.500000 | 1554 | 97.592000 | 1 | 1598 | 2 | chr1A.!!$F1 | 1597 |
7 | TraesCS5B01G518300 | chr1B | 70691103 | 70693259 | 2156 | True | 1370.000000 | 1548 | 97.466000 | 1 | 1598 | 2 | chr1B.!!$R2 | 1597 |
8 | TraesCS5B01G518300 | chr1B | 449255710 | 449256373 | 663 | True | 1050.000000 | 1050 | 94.993000 | 1358 | 2034 | 1 | chr1B.!!$R1 | 676 |
9 | TraesCS5B01G518300 | chrUn | 278748569 | 278749445 | 876 | False | 1543.000000 | 1543 | 98.404000 | 1 | 877 | 1 | chrUn.!!$F1 | 876 |
10 | TraesCS5B01G518300 | chr6A | 81878027 | 81878903 | 876 | True | 1543.000000 | 1543 | 98.404000 | 1 | 877 | 1 | chr6A.!!$R1 | 876 |
11 | TraesCS5B01G518300 | chr6A | 539539853 | 539540729 | 876 | False | 1531.000000 | 1531 | 98.176000 | 1 | 877 | 1 | chr6A.!!$F2 | 876 |
12 | TraesCS5B01G518300 | chr6A | 68986903 | 68987624 | 721 | False | 1192.000000 | 1192 | 96.414000 | 875 | 1598 | 1 | chr6A.!!$F1 | 723 |
13 | TraesCS5B01G518300 | chr3B | 220779740 | 220780616 | 876 | False | 1543.000000 | 1543 | 98.404000 | 1 | 877 | 1 | chr3B.!!$F4 | 876 |
14 | TraesCS5B01G518300 | chr3B | 565441860 | 565442736 | 876 | True | 1537.000000 | 1537 | 98.290000 | 1 | 877 | 1 | chr3B.!!$R2 | 876 |
15 | TraesCS5B01G518300 | chr3B | 217964725 | 217965601 | 876 | True | 1531.000000 | 1531 | 98.176000 | 1 | 877 | 1 | chr3B.!!$R1 | 876 |
16 | TraesCS5B01G518300 | chr3B | 123987270 | 123988278 | 1008 | False | 1504.000000 | 1504 | 93.571000 | 875 | 1884 | 1 | chr3B.!!$F2 | 1009 |
17 | TraesCS5B01G518300 | chr3B | 217969105 | 217969826 | 721 | False | 1192.000000 | 1192 | 96.414000 | 875 | 1598 | 1 | chr3B.!!$F3 | 723 |
18 | TraesCS5B01G518300 | chr7A | 594456285 | 594457161 | 876 | False | 1526.000000 | 1526 | 98.062000 | 1 | 877 | 1 | chr7A.!!$F1 | 876 |
19 | TraesCS5B01G518300 | chr7A | 376616415 | 376617078 | 663 | True | 1050.000000 | 1050 | 94.993000 | 1358 | 2034 | 1 | chr7A.!!$R1 | 676 |
20 | TraesCS5B01G518300 | chr5A | 695336666 | 695337329 | 663 | True | 1055.000000 | 1055 | 95.140000 | 1358 | 2034 | 1 | chr5A.!!$R2 | 676 |
21 | TraesCS5B01G518300 | chr5A | 695361239 | 695361902 | 663 | True | 1055.000000 | 1055 | 95.140000 | 1358 | 2034 | 1 | chr5A.!!$R3 | 676 |
22 | TraesCS5B01G518300 | chr4B | 316995573 | 316996239 | 666 | False | 1055.000000 | 1055 | 95.015000 | 1355 | 2034 | 1 | chr4B.!!$F1 | 679 |
23 | TraesCS5B01G518300 | chr4A | 535867295 | 535867958 | 663 | True | 1050.000000 | 1050 | 94.993000 | 1358 | 2034 | 1 | chr4A.!!$R1 | 676 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
98 | 99 | 0.756294 | TTTGAGGAGGCAACACGAGA | 59.244 | 50.0 | 0.0 | 0.0 | 41.41 | 4.04 | F |
1024 | 1586 | 0.179023 | ACGGTTTCAAAAGGGGCGTA | 60.179 | 50.0 | 0.0 | 0.0 | 0.00 | 4.42 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1047 | 1609 | 1.089920 | CCTCAATGACCAAAGCCTCG | 58.910 | 55.0 | 0.00 | 0.00 | 0.00 | 4.63 | R |
2212 | 2829 | 0.694771 | ACATGACAGACTGCCATGGT | 59.305 | 50.0 | 28.47 | 15.48 | 41.28 | 3.55 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
74 | 75 | 7.092716 | GCTTAATGATTGTGTGAAGGAAACAT | 58.907 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
98 | 99 | 0.756294 | TTTGAGGAGGCAACACGAGA | 59.244 | 50.000 | 0.00 | 0.00 | 41.41 | 4.04 |
240 | 241 | 2.358957 | TGCCTCAAGTGTATGTCATGC | 58.641 | 47.619 | 0.00 | 0.00 | 0.00 | 4.06 |
280 | 281 | 7.065563 | GCTGATTTGCTTGAGAAGAGAATTCTA | 59.934 | 37.037 | 8.25 | 0.00 | 31.96 | 2.10 |
430 | 431 | 6.174049 | GGACCTAATGTTGGAAGATATAGGC | 58.826 | 44.000 | 0.00 | 0.00 | 0.00 | 3.93 |
572 | 573 | 1.034838 | AGCCACTCGTTTTGCCACAA | 61.035 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
621 | 622 | 2.097825 | GAACAAGGCTGCATTGAGGAT | 58.902 | 47.619 | 30.65 | 14.72 | 0.00 | 3.24 |
633 | 634 | 8.359642 | GGCTGCATTGAGGATTTTATTTACATA | 58.640 | 33.333 | 0.50 | 0.00 | 0.00 | 2.29 |
706 | 707 | 7.977789 | TGTGCAAGAGATTATACTTTCAACA | 57.022 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
775 | 776 | 7.184106 | CACTTCTTAGAGTTCTTAGAGTAGCG | 58.816 | 42.308 | 0.00 | 0.00 | 33.79 | 4.26 |
979 | 1541 | 7.596621 | GGAAAAGGTTGAATGATCTTGTCTTTC | 59.403 | 37.037 | 0.00 | 0.00 | 39.94 | 2.62 |
1018 | 1580 | 5.469479 | AGAATATGCAACGGTTTCAAAAGG | 58.531 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
1024 | 1586 | 0.179023 | ACGGTTTCAAAAGGGGCGTA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
1047 | 1609 | 0.466124 | AGGTGGGCGAGAATAGCTTC | 59.534 | 55.000 | 0.00 | 0.00 | 36.74 | 3.86 |
1183 | 1745 | 3.701040 | GGATGTTGATGTGGCTATTGGTT | 59.299 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
1235 | 1797 | 4.820897 | CATAGGACAGCAACTACACTTCA | 58.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1273 | 1838 | 1.218875 | CCGTCTGCAACACTACGCAA | 61.219 | 55.000 | 0.00 | 0.00 | 37.76 | 4.85 |
1309 | 1874 | 4.877378 | ACAACACGACCTACAATTCCTA | 57.123 | 40.909 | 0.00 | 0.00 | 0.00 | 2.94 |
1332 | 1897 | 2.090606 | AGAAGATGAGGCAGAGGAGGAT | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1367 | 1932 | 0.892755 | CACTCAAGCATGCCCAATGT | 59.107 | 50.000 | 15.66 | 4.58 | 38.65 | 2.71 |
1434 | 2002 | 2.743664 | CAATGACGATCAAGAGCCAACA | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
1566 | 2135 | 2.834638 | ATCCCTTTTGCTATGCTGGT | 57.165 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1638 | 2207 | 7.936847 | ACTACTGGACTTGTGTCATTTGAATTA | 59.063 | 33.333 | 0.00 | 0.00 | 44.61 | 1.40 |
1953 | 2567 | 1.927838 | GCTTACAAGTCTCTAAGGCGC | 59.072 | 52.381 | 0.00 | 0.00 | 0.00 | 6.53 |
1982 | 2596 | 0.830648 | TTATGCCTCAGCGCTTAGGT | 59.169 | 50.000 | 32.46 | 19.77 | 44.31 | 3.08 |
2035 | 2652 | 5.124297 | GCCTTACCGCCTTAAAAACATAGAA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2036 | 2653 | 6.183360 | GCCTTACCGCCTTAAAAACATAGAAT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
2037 | 2654 | 7.012610 | GCCTTACCGCCTTAAAAACATAGAATA | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
2038 | 2655 | 8.340443 | CCTTACCGCCTTAAAAACATAGAATAC | 58.660 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2039 | 2656 | 8.789825 | TTACCGCCTTAAAAACATAGAATACA | 57.210 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2040 | 2657 | 7.875327 | ACCGCCTTAAAAACATAGAATACAT | 57.125 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2041 | 2658 | 8.288689 | ACCGCCTTAAAAACATAGAATACATT | 57.711 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
2042 | 2659 | 8.745590 | ACCGCCTTAAAAACATAGAATACATTT | 58.254 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2043 | 2660 | 9.019764 | CCGCCTTAAAAACATAGAATACATTTG | 57.980 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2044 | 2661 | 8.531530 | CGCCTTAAAAACATAGAATACATTTGC | 58.468 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2045 | 2662 | 8.817100 | GCCTTAAAAACATAGAATACATTTGCC | 58.183 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
2046 | 2663 | 9.868277 | CCTTAAAAACATAGAATACATTTGCCA | 57.132 | 29.630 | 0.00 | 0.00 | 0.00 | 4.92 |
2052 | 2669 | 9.553064 | AAACATAGAATACATTTGCCAAAAACA | 57.447 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2053 | 2670 | 9.723601 | AACATAGAATACATTTGCCAAAAACAT | 57.276 | 25.926 | 0.00 | 0.00 | 0.00 | 2.71 |
2054 | 2671 | 9.369904 | ACATAGAATACATTTGCCAAAAACATC | 57.630 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
2055 | 2672 | 9.590451 | CATAGAATACATTTGCCAAAAACATCT | 57.410 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
2058 | 2675 | 9.995003 | AGAATACATTTGCCAAAAACATCTTAA | 57.005 | 25.926 | 0.00 | 0.00 | 0.00 | 1.85 |
2060 | 2677 | 9.777297 | AATACATTTGCCAAAAACATCTTAAGT | 57.223 | 25.926 | 1.63 | 0.00 | 0.00 | 2.24 |
2061 | 2678 | 9.777297 | ATACATTTGCCAAAAACATCTTAAGTT | 57.223 | 25.926 | 1.63 | 0.00 | 0.00 | 2.66 |
2062 | 2679 | 8.504812 | ACATTTGCCAAAAACATCTTAAGTTT | 57.495 | 26.923 | 1.63 | 0.00 | 40.66 | 2.66 |
2063 | 2680 | 8.397148 | ACATTTGCCAAAAACATCTTAAGTTTG | 58.603 | 29.630 | 1.63 | 5.56 | 39.02 | 2.93 |
2064 | 2681 | 5.982465 | TGCCAAAAACATCTTAAGTTTGC | 57.018 | 34.783 | 1.63 | 3.53 | 39.02 | 3.68 |
2065 | 2682 | 4.813697 | TGCCAAAAACATCTTAAGTTTGCC | 59.186 | 37.500 | 1.63 | 0.00 | 39.02 | 4.52 |
2066 | 2683 | 4.813697 | GCCAAAAACATCTTAAGTTTGCCA | 59.186 | 37.500 | 1.63 | 0.00 | 39.02 | 4.92 |
2067 | 2684 | 5.469760 | GCCAAAAACATCTTAAGTTTGCCAT | 59.530 | 36.000 | 1.63 | 0.00 | 39.02 | 4.40 |
2068 | 2685 | 6.566376 | GCCAAAAACATCTTAAGTTTGCCATG | 60.566 | 38.462 | 1.63 | 0.40 | 39.02 | 3.66 |
2069 | 2686 | 6.073112 | CCAAAAACATCTTAAGTTTGCCATGG | 60.073 | 38.462 | 7.63 | 7.63 | 39.02 | 3.66 |
2070 | 2687 | 5.806654 | AAACATCTTAAGTTTGCCATGGT | 57.193 | 34.783 | 14.67 | 0.00 | 37.76 | 3.55 |
2071 | 2688 | 6.909550 | AAACATCTTAAGTTTGCCATGGTA | 57.090 | 33.333 | 14.67 | 5.86 | 37.76 | 3.25 |
2072 | 2689 | 6.909550 | AACATCTTAAGTTTGCCATGGTAA | 57.090 | 33.333 | 11.68 | 11.68 | 0.00 | 2.85 |
2073 | 2690 | 6.515272 | ACATCTTAAGTTTGCCATGGTAAG | 57.485 | 37.500 | 15.25 | 12.29 | 0.00 | 2.34 |
2074 | 2691 | 6.010219 | ACATCTTAAGTTTGCCATGGTAAGT | 58.990 | 36.000 | 15.25 | 8.99 | 0.00 | 2.24 |
2075 | 2692 | 6.493458 | ACATCTTAAGTTTGCCATGGTAAGTT | 59.507 | 34.615 | 15.25 | 17.71 | 0.00 | 2.66 |
2076 | 2693 | 6.969993 | TCTTAAGTTTGCCATGGTAAGTTT | 57.030 | 33.333 | 15.25 | 14.93 | 0.00 | 2.66 |
2077 | 2694 | 6.744112 | TCTTAAGTTTGCCATGGTAAGTTTG | 58.256 | 36.000 | 15.25 | 12.68 | 0.00 | 2.93 |
2078 | 2695 | 3.385193 | AGTTTGCCATGGTAAGTTTGC | 57.615 | 42.857 | 15.25 | 5.46 | 0.00 | 3.68 |
2079 | 2696 | 2.037121 | AGTTTGCCATGGTAAGTTTGCC | 59.963 | 45.455 | 15.25 | 1.74 | 0.00 | 4.52 |
2080 | 2697 | 1.709578 | TTGCCATGGTAAGTTTGCCA | 58.290 | 45.000 | 11.68 | 4.14 | 46.95 | 4.92 |
2089 | 2706 | 5.344743 | TGGTAAGTTTGCCATGTTTTTGA | 57.655 | 34.783 | 0.00 | 0.00 | 38.05 | 2.69 |
2090 | 2707 | 5.734720 | TGGTAAGTTTGCCATGTTTTTGAA | 58.265 | 33.333 | 0.00 | 0.00 | 38.05 | 2.69 |
2091 | 2708 | 5.582665 | TGGTAAGTTTGCCATGTTTTTGAAC | 59.417 | 36.000 | 0.00 | 0.00 | 38.05 | 3.18 |
2092 | 2709 | 5.582665 | GGTAAGTTTGCCATGTTTTTGAACA | 59.417 | 36.000 | 0.00 | 0.00 | 37.05 | 3.18 |
2093 | 2710 | 6.259829 | GGTAAGTTTGCCATGTTTTTGAACAT | 59.740 | 34.615 | 0.00 | 0.00 | 43.64 | 2.71 |
2094 | 2711 | 5.989551 | AGTTTGCCATGTTTTTGAACATC | 57.010 | 34.783 | 2.02 | 0.00 | 41.12 | 3.06 |
2095 | 2712 | 5.673514 | AGTTTGCCATGTTTTTGAACATCT | 58.326 | 33.333 | 2.02 | 0.00 | 41.12 | 2.90 |
2096 | 2713 | 6.815089 | AGTTTGCCATGTTTTTGAACATCTA | 58.185 | 32.000 | 2.02 | 0.00 | 41.12 | 1.98 |
2097 | 2714 | 7.444299 | AGTTTGCCATGTTTTTGAACATCTAT | 58.556 | 30.769 | 2.02 | 0.00 | 41.12 | 1.98 |
2098 | 2715 | 8.584157 | AGTTTGCCATGTTTTTGAACATCTATA | 58.416 | 29.630 | 2.02 | 0.00 | 41.12 | 1.31 |
2099 | 2716 | 9.202273 | GTTTGCCATGTTTTTGAACATCTATAA | 57.798 | 29.630 | 2.02 | 0.00 | 41.12 | 0.98 |
2100 | 2717 | 8.755696 | TTGCCATGTTTTTGAACATCTATAAC | 57.244 | 30.769 | 2.02 | 0.00 | 41.12 | 1.89 |
2101 | 2718 | 8.121305 | TGCCATGTTTTTGAACATCTATAACT | 57.879 | 30.769 | 2.02 | 0.00 | 41.12 | 2.24 |
2102 | 2719 | 8.584157 | TGCCATGTTTTTGAACATCTATAACTT | 58.416 | 29.630 | 2.02 | 0.00 | 41.12 | 2.66 |
2103 | 2720 | 9.076596 | GCCATGTTTTTGAACATCTATAACTTC | 57.923 | 33.333 | 2.02 | 0.00 | 41.12 | 3.01 |
2107 | 2724 | 9.126151 | TGTTTTTGAACATCTATAACTTCACCA | 57.874 | 29.630 | 0.00 | 0.00 | 0.00 | 4.17 |
2110 | 2727 | 7.864108 | TTGAACATCTATAACTTCACCATGG | 57.136 | 36.000 | 11.19 | 11.19 | 0.00 | 3.66 |
2111 | 2728 | 5.822519 | TGAACATCTATAACTTCACCATGGC | 59.177 | 40.000 | 13.04 | 0.00 | 0.00 | 4.40 |
2112 | 2729 | 5.372343 | ACATCTATAACTTCACCATGGCA | 57.628 | 39.130 | 13.04 | 0.00 | 0.00 | 4.92 |
2113 | 2730 | 5.754782 | ACATCTATAACTTCACCATGGCAA | 58.245 | 37.500 | 13.04 | 3.89 | 0.00 | 4.52 |
2114 | 2731 | 5.824624 | ACATCTATAACTTCACCATGGCAAG | 59.175 | 40.000 | 13.04 | 16.49 | 0.00 | 4.01 |
2115 | 2732 | 5.435686 | TCTATAACTTCACCATGGCAAGT | 57.564 | 39.130 | 19.62 | 19.62 | 31.48 | 3.16 |
2116 | 2733 | 5.815581 | TCTATAACTTCACCATGGCAAGTT | 58.184 | 37.500 | 30.91 | 30.91 | 41.94 | 2.66 |
2117 | 2734 | 6.245408 | TCTATAACTTCACCATGGCAAGTTT | 58.755 | 36.000 | 32.30 | 24.52 | 40.18 | 2.66 |
2118 | 2735 | 3.457610 | AACTTCACCATGGCAAGTTTG | 57.542 | 42.857 | 26.35 | 12.56 | 37.09 | 2.93 |
2157 | 2774 | 9.165035 | ACATCTATAAATTTGCCATGTTTTTGG | 57.835 | 29.630 | 0.00 | 0.00 | 39.94 | 3.28 |
2158 | 2775 | 9.381033 | CATCTATAAATTTGCCATGTTTTTGGA | 57.619 | 29.630 | 0.00 | 0.00 | 39.25 | 3.53 |
2159 | 2776 | 8.770438 | TCTATAAATTTGCCATGTTTTTGGAC | 57.230 | 30.769 | 0.00 | 0.00 | 39.25 | 4.02 |
2160 | 2777 | 8.370940 | TCTATAAATTTGCCATGTTTTTGGACA | 58.629 | 29.630 | 0.00 | 0.00 | 39.25 | 4.02 |
2161 | 2778 | 7.999450 | ATAAATTTGCCATGTTTTTGGACAT | 57.001 | 28.000 | 0.00 | 0.00 | 40.76 | 3.06 |
2171 | 2788 | 6.923928 | ATGTTTTTGGACATGGAAAAGTTG | 57.076 | 33.333 | 0.00 | 0.00 | 38.75 | 3.16 |
2172 | 2789 | 6.042638 | TGTTTTTGGACATGGAAAAGTTGA | 57.957 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2173 | 2790 | 5.872070 | TGTTTTTGGACATGGAAAAGTTGAC | 59.128 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2174 | 2791 | 5.667539 | TTTTGGACATGGAAAAGTTGACA | 57.332 | 34.783 | 0.00 | 0.00 | 0.00 | 3.58 |
2175 | 2792 | 5.867903 | TTTGGACATGGAAAAGTTGACAT | 57.132 | 34.783 | 0.00 | 0.00 | 0.00 | 3.06 |
2176 | 2793 | 4.852134 | TGGACATGGAAAAGTTGACATG | 57.148 | 40.909 | 11.14 | 11.14 | 44.61 | 3.21 |
2177 | 2794 | 3.573538 | TGGACATGGAAAAGTTGACATGG | 59.426 | 43.478 | 15.08 | 3.05 | 43.66 | 3.66 |
2178 | 2795 | 3.578688 | GACATGGAAAAGTTGACATGGC | 58.421 | 45.455 | 15.08 | 10.58 | 43.66 | 4.40 |
2179 | 2796 | 2.964464 | ACATGGAAAAGTTGACATGGCA | 59.036 | 40.909 | 0.00 | 0.00 | 43.66 | 4.92 |
2180 | 2797 | 3.387374 | ACATGGAAAAGTTGACATGGCAA | 59.613 | 39.130 | 10.79 | 10.79 | 43.66 | 4.52 |
2181 | 2798 | 3.731652 | TGGAAAAGTTGACATGGCAAG | 57.268 | 42.857 | 16.10 | 0.00 | 0.00 | 4.01 |
2182 | 2799 | 3.030291 | TGGAAAAGTTGACATGGCAAGT | 58.970 | 40.909 | 16.10 | 16.20 | 33.02 | 3.16 |
2183 | 2800 | 3.450457 | TGGAAAAGTTGACATGGCAAGTT | 59.550 | 39.130 | 25.76 | 25.76 | 41.76 | 2.66 |
2185 | 2802 | 4.270808 | GGAAAAGTTGACATGGCAAGTTTG | 59.729 | 41.667 | 36.33 | 0.00 | 45.63 | 2.93 |
2200 | 2817 | 5.542616 | CAAGTTTGCCATGTTTTTGAACA | 57.457 | 34.783 | 0.00 | 0.00 | 37.05 | 3.18 |
2201 | 2818 | 6.121613 | CAAGTTTGCCATGTTTTTGAACAT | 57.878 | 33.333 | 0.00 | 0.00 | 43.64 | 2.71 |
2202 | 2819 | 5.989551 | AGTTTGCCATGTTTTTGAACATC | 57.010 | 34.783 | 2.02 | 0.00 | 41.12 | 3.06 |
2203 | 2820 | 5.673514 | AGTTTGCCATGTTTTTGAACATCT | 58.326 | 33.333 | 2.02 | 0.00 | 41.12 | 2.90 |
2204 | 2821 | 6.815089 | AGTTTGCCATGTTTTTGAACATCTA | 58.185 | 32.000 | 2.02 | 0.00 | 41.12 | 1.98 |
2205 | 2822 | 7.444299 | AGTTTGCCATGTTTTTGAACATCTAT | 58.556 | 30.769 | 2.02 | 0.00 | 41.12 | 1.98 |
2206 | 2823 | 8.584157 | AGTTTGCCATGTTTTTGAACATCTATA | 58.416 | 29.630 | 2.02 | 0.00 | 41.12 | 1.31 |
2207 | 2824 | 9.202273 | GTTTGCCATGTTTTTGAACATCTATAA | 57.798 | 29.630 | 2.02 | 0.00 | 41.12 | 0.98 |
2208 | 2825 | 8.755696 | TTGCCATGTTTTTGAACATCTATAAC | 57.244 | 30.769 | 2.02 | 0.00 | 41.12 | 1.89 |
2209 | 2826 | 8.121305 | TGCCATGTTTTTGAACATCTATAACT | 57.879 | 30.769 | 2.02 | 0.00 | 41.12 | 2.24 |
2210 | 2827 | 8.584157 | TGCCATGTTTTTGAACATCTATAACTT | 58.416 | 29.630 | 2.02 | 0.00 | 41.12 | 2.66 |
2211 | 2828 | 9.076596 | GCCATGTTTTTGAACATCTATAACTTC | 57.923 | 33.333 | 2.02 | 0.00 | 41.12 | 3.01 |
2215 | 2832 | 9.126151 | TGTTTTTGAACATCTATAACTTCACCA | 57.874 | 29.630 | 0.00 | 0.00 | 0.00 | 4.17 |
2218 | 2835 | 7.864108 | TTGAACATCTATAACTTCACCATGG | 57.136 | 36.000 | 11.19 | 11.19 | 0.00 | 3.66 |
2219 | 2836 | 5.822519 | TGAACATCTATAACTTCACCATGGC | 59.177 | 40.000 | 13.04 | 0.00 | 0.00 | 4.40 |
2220 | 2837 | 5.372343 | ACATCTATAACTTCACCATGGCA | 57.628 | 39.130 | 13.04 | 0.00 | 0.00 | 4.92 |
2221 | 2838 | 5.371526 | ACATCTATAACTTCACCATGGCAG | 58.628 | 41.667 | 13.04 | 8.19 | 0.00 | 4.85 |
2222 | 2839 | 5.104360 | ACATCTATAACTTCACCATGGCAGT | 60.104 | 40.000 | 13.04 | 8.91 | 0.00 | 4.40 |
2223 | 2840 | 5.023533 | TCTATAACTTCACCATGGCAGTC | 57.976 | 43.478 | 13.04 | 0.00 | 0.00 | 3.51 |
2224 | 2841 | 4.716784 | TCTATAACTTCACCATGGCAGTCT | 59.283 | 41.667 | 13.04 | 5.76 | 0.00 | 3.24 |
2225 | 2842 | 1.901591 | AACTTCACCATGGCAGTCTG | 58.098 | 50.000 | 13.04 | 1.70 | 0.00 | 3.51 |
2226 | 2843 | 0.767375 | ACTTCACCATGGCAGTCTGT | 59.233 | 50.000 | 13.04 | 0.52 | 0.00 | 3.41 |
2227 | 2844 | 1.271054 | ACTTCACCATGGCAGTCTGTC | 60.271 | 52.381 | 13.04 | 0.00 | 0.00 | 3.51 |
2228 | 2845 | 0.764271 | TTCACCATGGCAGTCTGTCA | 59.236 | 50.000 | 13.04 | 10.09 | 35.91 | 3.58 |
2229 | 2846 | 0.986527 | TCACCATGGCAGTCTGTCAT | 59.013 | 50.000 | 14.33 | 14.33 | 44.65 | 3.06 |
2235 | 2852 | 2.936919 | TGGCAGTCTGTCATGTTTCT | 57.063 | 45.000 | 2.12 | 0.00 | 0.00 | 2.52 |
2236 | 2853 | 2.497138 | TGGCAGTCTGTCATGTTTCTG | 58.503 | 47.619 | 2.12 | 0.00 | 0.00 | 3.02 |
2237 | 2854 | 2.104622 | TGGCAGTCTGTCATGTTTCTGA | 59.895 | 45.455 | 2.12 | 0.00 | 0.00 | 3.27 |
2238 | 2855 | 3.141398 | GGCAGTCTGTCATGTTTCTGAA | 58.859 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2239 | 2856 | 3.565482 | GGCAGTCTGTCATGTTTCTGAAA | 59.435 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2240 | 2857 | 4.036734 | GGCAGTCTGTCATGTTTCTGAAAA | 59.963 | 41.667 | 4.09 | 0.00 | 0.00 | 2.29 |
2241 | 2858 | 5.278660 | GGCAGTCTGTCATGTTTCTGAAAAT | 60.279 | 40.000 | 4.09 | 0.00 | 0.00 | 1.82 |
2242 | 2859 | 5.855395 | GCAGTCTGTCATGTTTCTGAAAATC | 59.145 | 40.000 | 4.09 | 0.00 | 0.00 | 2.17 |
2243 | 2860 | 6.293845 | GCAGTCTGTCATGTTTCTGAAAATCT | 60.294 | 38.462 | 4.09 | 0.00 | 0.00 | 2.40 |
2244 | 2861 | 7.095060 | GCAGTCTGTCATGTTTCTGAAAATCTA | 60.095 | 37.037 | 4.09 | 0.00 | 0.00 | 1.98 |
2245 | 2862 | 8.944029 | CAGTCTGTCATGTTTCTGAAAATCTAT | 58.056 | 33.333 | 4.09 | 0.00 | 0.00 | 1.98 |
2303 | 2920 | 4.462508 | TGGCAAGTTTGTCATGTTTTCA | 57.537 | 36.364 | 0.00 | 0.00 | 37.97 | 2.69 |
2304 | 2921 | 4.431809 | TGGCAAGTTTGTCATGTTTTCAG | 58.568 | 39.130 | 0.00 | 0.00 | 37.97 | 3.02 |
2305 | 2922 | 4.159321 | TGGCAAGTTTGTCATGTTTTCAGA | 59.841 | 37.500 | 0.00 | 0.00 | 37.97 | 3.27 |
2306 | 2923 | 4.504097 | GGCAAGTTTGTCATGTTTTCAGAC | 59.496 | 41.667 | 0.00 | 0.00 | 31.86 | 3.51 |
2307 | 2924 | 5.101628 | GCAAGTTTGTCATGTTTTCAGACA | 58.898 | 37.500 | 0.00 | 0.00 | 36.74 | 3.41 |
2308 | 2925 | 5.576384 | GCAAGTTTGTCATGTTTTCAGACAA | 59.424 | 36.000 | 0.00 | 0.00 | 41.38 | 3.18 |
2309 | 2926 | 6.090628 | GCAAGTTTGTCATGTTTTCAGACAAA | 59.909 | 34.615 | 13.92 | 13.92 | 44.75 | 2.83 |
2310 | 2927 | 7.359933 | GCAAGTTTGTCATGTTTTCAGACAAAA | 60.360 | 33.333 | 18.06 | 4.23 | 46.17 | 2.44 |
2311 | 2928 | 8.494347 | CAAGTTTGTCATGTTTTCAGACAAAAA | 58.506 | 29.630 | 18.06 | 0.00 | 46.17 | 1.94 |
2338 | 2955 | 4.939271 | TGCTATGGCAAATCACATGAATG | 58.061 | 39.130 | 0.00 | 0.00 | 46.36 | 2.67 |
2339 | 2956 | 4.403113 | TGCTATGGCAAATCACATGAATGT | 59.597 | 37.500 | 0.00 | 0.00 | 46.36 | 2.71 |
2340 | 2957 | 5.105269 | TGCTATGGCAAATCACATGAATGTT | 60.105 | 36.000 | 0.00 | 0.00 | 46.36 | 2.71 |
2341 | 2958 | 5.233476 | GCTATGGCAAATCACATGAATGTTG | 59.767 | 40.000 | 0.00 | 0.00 | 37.37 | 3.33 |
2342 | 2959 | 4.603989 | TGGCAAATCACATGAATGTTGT | 57.396 | 36.364 | 0.00 | 0.00 | 39.39 | 3.32 |
2343 | 2960 | 4.558178 | TGGCAAATCACATGAATGTTGTC | 58.442 | 39.130 | 0.00 | 0.66 | 39.39 | 3.18 |
2344 | 2961 | 4.038883 | TGGCAAATCACATGAATGTTGTCA | 59.961 | 37.500 | 0.00 | 3.47 | 39.39 | 3.58 |
2345 | 2962 | 5.172934 | GGCAAATCACATGAATGTTGTCAT | 58.827 | 37.500 | 0.00 | 0.00 | 39.39 | 3.06 |
2346 | 2963 | 6.071503 | TGGCAAATCACATGAATGTTGTCATA | 60.072 | 34.615 | 0.00 | 0.00 | 39.39 | 2.15 |
2347 | 2964 | 6.254157 | GGCAAATCACATGAATGTTGTCATAC | 59.746 | 38.462 | 0.00 | 0.00 | 39.39 | 2.39 |
2348 | 2965 | 6.807720 | GCAAATCACATGAATGTTGTCATACA | 59.192 | 34.615 | 0.00 | 0.00 | 39.39 | 2.29 |
2349 | 2966 | 7.490079 | GCAAATCACATGAATGTTGTCATACAT | 59.510 | 33.333 | 0.00 | 0.00 | 39.39 | 2.29 |
2353 | 2970 | 8.558973 | TCACATGAATGTTGTCATACATAACA | 57.441 | 30.769 | 0.00 | 0.00 | 40.11 | 2.41 |
2354 | 2971 | 9.007901 | TCACATGAATGTTGTCATACATAACAA | 57.992 | 29.630 | 0.00 | 0.00 | 39.34 | 2.83 |
2355 | 2972 | 9.623350 | CACATGAATGTTGTCATACATAACAAA | 57.377 | 29.630 | 0.00 | 0.00 | 39.34 | 2.83 |
2359 | 2976 | 9.138062 | TGAATGTTGTCATACATAACAAATTGC | 57.862 | 29.630 | 0.00 | 0.00 | 39.34 | 3.56 |
2360 | 2977 | 8.477984 | AATGTTGTCATACATAACAAATTGCC | 57.522 | 30.769 | 0.00 | 0.00 | 39.34 | 4.52 |
2361 | 2978 | 6.986250 | TGTTGTCATACATAACAAATTGCCA | 58.014 | 32.000 | 0.00 | 0.00 | 37.15 | 4.92 |
2362 | 2979 | 7.609960 | TGTTGTCATACATAACAAATTGCCAT | 58.390 | 30.769 | 0.00 | 0.00 | 37.15 | 4.40 |
2363 | 2980 | 8.093307 | TGTTGTCATACATAACAAATTGCCATT | 58.907 | 29.630 | 0.00 | 0.00 | 37.15 | 3.16 |
2364 | 2981 | 8.382130 | GTTGTCATACATAACAAATTGCCATTG | 58.618 | 33.333 | 0.00 | 0.00 | 37.15 | 2.82 |
2365 | 2982 | 7.609960 | TGTCATACATAACAAATTGCCATTGT | 58.390 | 30.769 | 0.00 | 0.00 | 42.56 | 2.71 |
2367 | 2984 | 8.934825 | GTCATACATAACAAATTGCCATTGTTT | 58.065 | 29.630 | 14.28 | 0.95 | 45.97 | 2.83 |
2372 | 2989 | 9.153721 | ACATAACAAATTGCCATTGTTTATGAG | 57.846 | 29.630 | 20.40 | 10.11 | 45.97 | 2.90 |
2373 | 2990 | 6.484818 | AACAAATTGCCATTGTTTATGAGC | 57.515 | 33.333 | 5.95 | 0.00 | 45.97 | 4.26 |
2374 | 2991 | 5.549347 | ACAAATTGCCATTGTTTATGAGCA | 58.451 | 33.333 | 0.00 | 0.00 | 37.74 | 4.26 |
2375 | 2992 | 5.996513 | ACAAATTGCCATTGTTTATGAGCAA | 59.003 | 32.000 | 12.58 | 12.58 | 45.65 | 3.91 |
2376 | 2993 | 6.148150 | ACAAATTGCCATTGTTTATGAGCAAG | 59.852 | 34.615 | 14.35 | 7.68 | 45.23 | 4.01 |
2377 | 2994 | 3.872511 | TGCCATTGTTTATGAGCAAGG | 57.127 | 42.857 | 0.00 | 0.00 | 37.43 | 3.61 |
2378 | 2995 | 3.429492 | TGCCATTGTTTATGAGCAAGGA | 58.571 | 40.909 | 0.36 | 0.00 | 37.43 | 3.36 |
2379 | 2996 | 3.193267 | TGCCATTGTTTATGAGCAAGGAC | 59.807 | 43.478 | 0.36 | 0.00 | 37.43 | 3.85 |
2380 | 2997 | 3.193267 | GCCATTGTTTATGAGCAAGGACA | 59.807 | 43.478 | 0.36 | 0.00 | 36.26 | 4.02 |
2381 | 2998 | 4.321899 | GCCATTGTTTATGAGCAAGGACAA | 60.322 | 41.667 | 0.36 | 0.00 | 36.26 | 3.18 |
2382 | 2999 | 5.782047 | CCATTGTTTATGAGCAAGGACAAA | 58.218 | 37.500 | 0.36 | 0.00 | 36.26 | 2.83 |
2383 | 3000 | 5.865552 | CCATTGTTTATGAGCAAGGACAAAG | 59.134 | 40.000 | 0.36 | 0.00 | 36.26 | 2.77 |
2384 | 3001 | 6.294675 | CCATTGTTTATGAGCAAGGACAAAGA | 60.295 | 38.462 | 0.36 | 0.00 | 36.26 | 2.52 |
2385 | 3002 | 6.899393 | TTGTTTATGAGCAAGGACAAAGAT | 57.101 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2386 | 3003 | 6.258230 | TGTTTATGAGCAAGGACAAAGATG | 57.742 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2387 | 3004 | 6.003326 | TGTTTATGAGCAAGGACAAAGATGA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2388 | 3005 | 6.489700 | TGTTTATGAGCAAGGACAAAGATGAA | 59.510 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2389 | 3006 | 7.014134 | TGTTTATGAGCAAGGACAAAGATGAAA | 59.986 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2390 | 3007 | 7.523293 | TTATGAGCAAGGACAAAGATGAAAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2391 | 3008 | 5.850557 | TGAGCAAGGACAAAGATGAAAAA | 57.149 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
2417 | 3034 | 8.859517 | AAAATCCATGAACTTTGCAAAATTTG | 57.140 | 26.923 | 13.84 | 5.75 | 0.00 | 2.32 |
2482 | 3099 | 7.935338 | ATGACAAATGACAATTGAACAAGAC | 57.065 | 32.000 | 13.59 | 7.56 | 0.00 | 3.01 |
2483 | 3100 | 6.861144 | TGACAAATGACAATTGAACAAGACA | 58.139 | 32.000 | 13.59 | 9.56 | 0.00 | 3.41 |
2484 | 3101 | 6.751425 | TGACAAATGACAATTGAACAAGACAC | 59.249 | 34.615 | 13.59 | 6.44 | 0.00 | 3.67 |
2485 | 3102 | 6.629128 | ACAAATGACAATTGAACAAGACACA | 58.371 | 32.000 | 13.59 | 0.00 | 0.00 | 3.72 |
2486 | 3103 | 7.095910 | ACAAATGACAATTGAACAAGACACAA | 58.904 | 30.769 | 13.59 | 0.00 | 0.00 | 3.33 |
2487 | 3104 | 7.601886 | ACAAATGACAATTGAACAAGACACAAA | 59.398 | 29.630 | 13.59 | 0.00 | 0.00 | 2.83 |
2488 | 3105 | 8.441608 | CAAATGACAATTGAACAAGACACAAAA | 58.558 | 29.630 | 13.59 | 0.00 | 0.00 | 2.44 |
2489 | 3106 | 8.545229 | AATGACAATTGAACAAGACACAAAAA | 57.455 | 26.923 | 13.59 | 0.00 | 0.00 | 1.94 |
2490 | 3107 | 7.344910 | TGACAATTGAACAAGACACAAAAAC | 57.655 | 32.000 | 13.59 | 0.00 | 0.00 | 2.43 |
2491 | 3108 | 6.925718 | TGACAATTGAACAAGACACAAAAACA | 59.074 | 30.769 | 13.59 | 0.00 | 0.00 | 2.83 |
2492 | 3109 | 7.116090 | TGACAATTGAACAAGACACAAAAACAG | 59.884 | 33.333 | 13.59 | 0.00 | 0.00 | 3.16 |
2493 | 3110 | 7.151308 | ACAATTGAACAAGACACAAAAACAGA | 58.849 | 30.769 | 13.59 | 0.00 | 0.00 | 3.41 |
2494 | 3111 | 7.655328 | ACAATTGAACAAGACACAAAAACAGAA | 59.345 | 29.630 | 13.59 | 0.00 | 0.00 | 3.02 |
2495 | 3112 | 8.494347 | CAATTGAACAAGACACAAAAACAGAAA | 58.506 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2496 | 3113 | 8.776376 | ATTGAACAAGACACAAAAACAGAAAT | 57.224 | 26.923 | 0.00 | 0.00 | 0.00 | 2.17 |
2497 | 3114 | 8.600449 | TTGAACAAGACACAAAAACAGAAATT | 57.400 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
2498 | 3115 | 8.600449 | TGAACAAGACACAAAAACAGAAATTT | 57.400 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
2499 | 3116 | 9.050601 | TGAACAAGACACAAAAACAGAAATTTT | 57.949 | 25.926 | 0.00 | 0.00 | 33.13 | 1.82 |
2500 | 3117 | 9.528847 | GAACAAGACACAAAAACAGAAATTTTC | 57.471 | 29.630 | 0.66 | 0.66 | 31.35 | 2.29 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 3.260884 | CACTAGGAGGCTTGTAACCTGAA | 59.739 | 47.826 | 2.11 | 0.00 | 37.77 | 3.02 |
74 | 75 | 2.297701 | GTGTTGCCTCCTCAAAAGTCA | 58.702 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
240 | 241 | 5.938710 | AGCAAATCAGCTATCATATCACCAG | 59.061 | 40.000 | 0.00 | 0.00 | 44.50 | 4.00 |
280 | 281 | 5.388654 | ACCACATTCTCTTTTCCAACATCT | 58.611 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
430 | 431 | 4.925646 | GGCTTCTTAAATGCCTTCAACTTG | 59.074 | 41.667 | 0.00 | 0.00 | 43.05 | 3.16 |
572 | 573 | 3.191888 | ACTCCTAAGTGTGAGGATGGT | 57.808 | 47.619 | 0.00 | 0.00 | 42.31 | 3.55 |
633 | 634 | 4.901250 | ACTTGTTTCCAACCCATTCTTCAT | 59.099 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
706 | 707 | 0.957395 | CAATTGCGCTCCACCACTCT | 60.957 | 55.000 | 9.73 | 0.00 | 0.00 | 3.24 |
775 | 776 | 1.964552 | CAGGCTTCTCATCACCATCC | 58.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
917 | 1479 | 5.828747 | TCCTTTTCTTCGTATGGATCTACG | 58.171 | 41.667 | 7.93 | 7.93 | 44.48 | 3.51 |
979 | 1541 | 6.038161 | TGCATATTCTTCCGGTTGTATGAAAG | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
1018 | 1580 | 2.437895 | GCCCACCTTCTTACGCCC | 60.438 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1024 | 1586 | 1.134371 | GCTATTCTCGCCCACCTTCTT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
1047 | 1609 | 1.089920 | CCTCAATGACCAAAGCCTCG | 58.910 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1147 | 1709 | 4.525996 | TCAACATCCTCCCATGTAATGTG | 58.474 | 43.478 | 0.00 | 0.00 | 44.81 | 3.21 |
1183 | 1745 | 2.615493 | GGCCTCGAAGGTTTGAAGATGA | 60.615 | 50.000 | 0.00 | 0.00 | 37.80 | 2.92 |
1235 | 1797 | 1.215423 | GGACATTTGTCTGGCCCCTAT | 59.785 | 52.381 | 10.32 | 0.00 | 44.20 | 2.57 |
1273 | 1838 | 3.057456 | CGTGTTGTAGTAGGTCTCTTGCT | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
1309 | 1874 | 2.504996 | CCTCCTCTGCCTCATCTTCTTT | 59.495 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1332 | 1897 | 1.949525 | GAGTGTTGCTCTTGCTCCAAA | 59.050 | 47.619 | 0.00 | 0.00 | 40.98 | 3.28 |
1356 | 1921 | 1.759299 | CCCCTCCACATTGGGCATG | 60.759 | 63.158 | 0.00 | 0.00 | 42.03 | 4.06 |
1367 | 1932 | 1.585592 | AGTATGAATCCTCCCCCTCCA | 59.414 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1638 | 2207 | 7.308348 | GCACGGCATATTACATAACCATTAACT | 60.308 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1661 | 2230 | 5.088739 | GTGTAACTGCAATCTACAATGCAC | 58.911 | 41.667 | 0.00 | 0.00 | 46.87 | 4.57 |
1681 | 2250 | 7.550906 | GGAAAGAAAGATAGCAAGTATGAGTGT | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 3.55 |
1876 | 2490 | 4.891992 | ACTAGGCATACATCCATACACC | 57.108 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
1930 | 2544 | 4.184629 | CGCCTTAGAGACTTGTAAGCAAT | 58.815 | 43.478 | 0.00 | 0.00 | 33.65 | 3.56 |
2035 | 2652 | 9.777297 | AACTTAAGATGTTTTTGGCAAATGTAT | 57.223 | 25.926 | 14.29 | 8.12 | 0.00 | 2.29 |
2036 | 2653 | 9.606631 | AAACTTAAGATGTTTTTGGCAAATGTA | 57.393 | 25.926 | 14.29 | 3.37 | 34.40 | 2.29 |
2037 | 2654 | 8.397148 | CAAACTTAAGATGTTTTTGGCAAATGT | 58.603 | 29.630 | 14.29 | 0.14 | 35.71 | 2.71 |
2038 | 2655 | 7.376601 | GCAAACTTAAGATGTTTTTGGCAAATG | 59.623 | 33.333 | 14.29 | 4.89 | 35.71 | 2.32 |
2039 | 2656 | 7.416817 | GCAAACTTAAGATGTTTTTGGCAAAT | 58.583 | 30.769 | 14.29 | 0.00 | 35.71 | 2.32 |
2040 | 2657 | 6.183360 | GGCAAACTTAAGATGTTTTTGGCAAA | 60.183 | 34.615 | 24.77 | 8.93 | 46.46 | 3.68 |
2041 | 2658 | 5.295540 | GGCAAACTTAAGATGTTTTTGGCAA | 59.704 | 36.000 | 24.77 | 0.00 | 46.46 | 4.52 |
2042 | 2659 | 4.813697 | GGCAAACTTAAGATGTTTTTGGCA | 59.186 | 37.500 | 24.77 | 0.00 | 46.46 | 4.92 |
2043 | 2660 | 5.342806 | GGCAAACTTAAGATGTTTTTGGC | 57.657 | 39.130 | 19.36 | 19.36 | 42.94 | 4.52 |
2044 | 2661 | 6.073112 | CCATGGCAAACTTAAGATGTTTTTGG | 60.073 | 38.462 | 10.09 | 9.65 | 35.71 | 3.28 |
2045 | 2662 | 6.482973 | ACCATGGCAAACTTAAGATGTTTTTG | 59.517 | 34.615 | 13.04 | 9.95 | 35.71 | 2.44 |
2046 | 2663 | 6.591001 | ACCATGGCAAACTTAAGATGTTTTT | 58.409 | 32.000 | 13.04 | 0.00 | 35.71 | 1.94 |
2047 | 2664 | 6.173427 | ACCATGGCAAACTTAAGATGTTTT | 57.827 | 33.333 | 13.04 | 0.00 | 35.71 | 2.43 |
2048 | 2665 | 5.806654 | ACCATGGCAAACTTAAGATGTTT | 57.193 | 34.783 | 13.04 | 0.00 | 38.04 | 2.83 |
2049 | 2666 | 6.493458 | ACTTACCATGGCAAACTTAAGATGTT | 59.507 | 34.615 | 19.22 | 0.00 | 0.00 | 2.71 |
2050 | 2667 | 6.010219 | ACTTACCATGGCAAACTTAAGATGT | 58.990 | 36.000 | 19.22 | 0.81 | 0.00 | 3.06 |
2051 | 2668 | 6.515272 | ACTTACCATGGCAAACTTAAGATG | 57.485 | 37.500 | 19.22 | 8.90 | 0.00 | 2.90 |
2052 | 2669 | 7.378181 | CAAACTTACCATGGCAAACTTAAGAT | 58.622 | 34.615 | 19.22 | 8.78 | 0.00 | 2.40 |
2053 | 2670 | 6.737346 | GCAAACTTACCATGGCAAACTTAAGA | 60.737 | 38.462 | 19.22 | 0.00 | 0.00 | 2.10 |
2054 | 2671 | 5.405269 | GCAAACTTACCATGGCAAACTTAAG | 59.595 | 40.000 | 13.04 | 13.25 | 0.00 | 1.85 |
2055 | 2672 | 5.293560 | GCAAACTTACCATGGCAAACTTAA | 58.706 | 37.500 | 13.04 | 0.55 | 0.00 | 1.85 |
2056 | 2673 | 4.262249 | GGCAAACTTACCATGGCAAACTTA | 60.262 | 41.667 | 13.04 | 0.00 | 39.25 | 2.24 |
2057 | 2674 | 3.494223 | GGCAAACTTACCATGGCAAACTT | 60.494 | 43.478 | 13.04 | 0.00 | 39.25 | 2.66 |
2058 | 2675 | 2.037121 | GGCAAACTTACCATGGCAAACT | 59.963 | 45.455 | 13.04 | 0.00 | 39.25 | 2.66 |
2059 | 2676 | 2.224161 | TGGCAAACTTACCATGGCAAAC | 60.224 | 45.455 | 13.04 | 0.00 | 45.18 | 2.93 |
2060 | 2677 | 2.042464 | TGGCAAACTTACCATGGCAAA | 58.958 | 42.857 | 13.04 | 5.75 | 45.18 | 3.68 |
2061 | 2678 | 1.709578 | TGGCAAACTTACCATGGCAA | 58.290 | 45.000 | 13.04 | 3.96 | 45.18 | 4.52 |
2062 | 2679 | 3.446658 | TGGCAAACTTACCATGGCA | 57.553 | 47.368 | 13.04 | 0.00 | 45.85 | 4.92 |
2067 | 2684 | 5.344743 | TCAAAAACATGGCAAACTTACCA | 57.655 | 34.783 | 0.00 | 0.00 | 41.06 | 3.25 |
2068 | 2685 | 5.582665 | TGTTCAAAAACATGGCAAACTTACC | 59.417 | 36.000 | 0.00 | 0.00 | 40.45 | 2.85 |
2069 | 2686 | 6.654793 | TGTTCAAAAACATGGCAAACTTAC | 57.345 | 33.333 | 0.00 | 0.00 | 40.45 | 2.34 |
2084 | 2701 | 8.739039 | CCATGGTGAAGTTATAGATGTTCAAAA | 58.261 | 33.333 | 2.57 | 0.00 | 30.94 | 2.44 |
2085 | 2702 | 7.148086 | GCCATGGTGAAGTTATAGATGTTCAAA | 60.148 | 37.037 | 14.67 | 0.00 | 30.94 | 2.69 |
2086 | 2703 | 6.318648 | GCCATGGTGAAGTTATAGATGTTCAA | 59.681 | 38.462 | 14.67 | 0.00 | 30.94 | 2.69 |
2087 | 2704 | 5.822519 | GCCATGGTGAAGTTATAGATGTTCA | 59.177 | 40.000 | 14.67 | 0.00 | 0.00 | 3.18 |
2088 | 2705 | 5.822519 | TGCCATGGTGAAGTTATAGATGTTC | 59.177 | 40.000 | 14.67 | 0.00 | 0.00 | 3.18 |
2089 | 2706 | 5.754782 | TGCCATGGTGAAGTTATAGATGTT | 58.245 | 37.500 | 14.67 | 0.00 | 0.00 | 2.71 |
2090 | 2707 | 5.372343 | TGCCATGGTGAAGTTATAGATGT | 57.628 | 39.130 | 14.67 | 0.00 | 0.00 | 3.06 |
2091 | 2708 | 5.824624 | ACTTGCCATGGTGAAGTTATAGATG | 59.175 | 40.000 | 19.95 | 1.61 | 0.00 | 2.90 |
2092 | 2709 | 6.006275 | ACTTGCCATGGTGAAGTTATAGAT | 57.994 | 37.500 | 19.95 | 2.55 | 0.00 | 1.98 |
2093 | 2710 | 5.435686 | ACTTGCCATGGTGAAGTTATAGA | 57.564 | 39.130 | 19.95 | 0.00 | 0.00 | 1.98 |
2094 | 2711 | 6.324819 | CAAACTTGCCATGGTGAAGTTATAG | 58.675 | 40.000 | 29.40 | 22.04 | 38.64 | 1.31 |
2095 | 2712 | 6.266168 | CAAACTTGCCATGGTGAAGTTATA | 57.734 | 37.500 | 29.40 | 3.68 | 38.64 | 0.98 |
2096 | 2713 | 5.138125 | CAAACTTGCCATGGTGAAGTTAT | 57.862 | 39.130 | 29.40 | 21.07 | 38.64 | 1.89 |
2097 | 2714 | 4.582701 | CAAACTTGCCATGGTGAAGTTA | 57.417 | 40.909 | 29.40 | 5.74 | 38.64 | 2.24 |
2098 | 2715 | 3.457610 | CAAACTTGCCATGGTGAAGTT | 57.542 | 42.857 | 26.27 | 26.27 | 40.77 | 2.66 |
2131 | 2748 | 9.165035 | CCAAAAACATGGCAAATTTATAGATGT | 57.835 | 29.630 | 0.00 | 0.00 | 32.78 | 3.06 |
2132 | 2749 | 9.381033 | TCCAAAAACATGGCAAATTTATAGATG | 57.619 | 29.630 | 0.00 | 0.00 | 40.46 | 2.90 |
2133 | 2750 | 9.382275 | GTCCAAAAACATGGCAAATTTATAGAT | 57.618 | 29.630 | 0.00 | 0.00 | 40.46 | 1.98 |
2134 | 2751 | 8.370940 | TGTCCAAAAACATGGCAAATTTATAGA | 58.629 | 29.630 | 0.00 | 0.00 | 40.46 | 1.98 |
2135 | 2752 | 8.545229 | TGTCCAAAAACATGGCAAATTTATAG | 57.455 | 30.769 | 0.00 | 0.00 | 40.46 | 1.31 |
2137 | 2754 | 7.999450 | ATGTCCAAAAACATGGCAAATTTAT | 57.001 | 28.000 | 0.00 | 0.00 | 38.43 | 1.40 |
2148 | 2765 | 6.538381 | GTCAACTTTTCCATGTCCAAAAACAT | 59.462 | 34.615 | 0.00 | 0.00 | 40.49 | 2.71 |
2149 | 2766 | 5.872070 | GTCAACTTTTCCATGTCCAAAAACA | 59.128 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2150 | 2767 | 5.872070 | TGTCAACTTTTCCATGTCCAAAAAC | 59.128 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2151 | 2768 | 6.042638 | TGTCAACTTTTCCATGTCCAAAAA | 57.957 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2152 | 2769 | 5.667539 | TGTCAACTTTTCCATGTCCAAAA | 57.332 | 34.783 | 0.00 | 0.00 | 0.00 | 2.44 |
2153 | 2770 | 5.453057 | CCATGTCAACTTTTCCATGTCCAAA | 60.453 | 40.000 | 0.00 | 0.00 | 34.30 | 3.28 |
2154 | 2771 | 4.039004 | CCATGTCAACTTTTCCATGTCCAA | 59.961 | 41.667 | 0.00 | 0.00 | 34.30 | 3.53 |
2155 | 2772 | 3.573538 | CCATGTCAACTTTTCCATGTCCA | 59.426 | 43.478 | 0.00 | 0.00 | 34.30 | 4.02 |
2156 | 2773 | 3.614870 | GCCATGTCAACTTTTCCATGTCC | 60.615 | 47.826 | 0.00 | 0.00 | 34.30 | 4.02 |
2157 | 2774 | 3.005684 | TGCCATGTCAACTTTTCCATGTC | 59.994 | 43.478 | 0.00 | 0.00 | 34.30 | 3.06 |
2158 | 2775 | 2.964464 | TGCCATGTCAACTTTTCCATGT | 59.036 | 40.909 | 0.00 | 0.00 | 34.30 | 3.21 |
2159 | 2776 | 3.663995 | TGCCATGTCAACTTTTCCATG | 57.336 | 42.857 | 0.00 | 0.00 | 35.56 | 3.66 |
2160 | 2777 | 3.642848 | ACTTGCCATGTCAACTTTTCCAT | 59.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2161 | 2778 | 3.030291 | ACTTGCCATGTCAACTTTTCCA | 58.970 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
2162 | 2779 | 3.733443 | ACTTGCCATGTCAACTTTTCC | 57.267 | 42.857 | 0.00 | 0.00 | 0.00 | 3.13 |
2163 | 2780 | 5.393902 | CAAACTTGCCATGTCAACTTTTC | 57.606 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
2177 | 2794 | 4.142730 | TGTTCAAAAACATGGCAAACTTGC | 60.143 | 37.500 | 5.85 | 5.85 | 45.44 | 4.01 |
2178 | 2795 | 5.542616 | TGTTCAAAAACATGGCAAACTTG | 57.457 | 34.783 | 0.00 | 0.00 | 40.45 | 3.16 |
2192 | 2809 | 8.739039 | CCATGGTGAAGTTATAGATGTTCAAAA | 58.261 | 33.333 | 2.57 | 0.00 | 30.94 | 2.44 |
2193 | 2810 | 7.148086 | GCCATGGTGAAGTTATAGATGTTCAAA | 60.148 | 37.037 | 14.67 | 0.00 | 30.94 | 2.69 |
2194 | 2811 | 6.318648 | GCCATGGTGAAGTTATAGATGTTCAA | 59.681 | 38.462 | 14.67 | 0.00 | 30.94 | 2.69 |
2195 | 2812 | 5.822519 | GCCATGGTGAAGTTATAGATGTTCA | 59.177 | 40.000 | 14.67 | 0.00 | 0.00 | 3.18 |
2196 | 2813 | 5.822519 | TGCCATGGTGAAGTTATAGATGTTC | 59.177 | 40.000 | 14.67 | 0.00 | 0.00 | 3.18 |
2197 | 2814 | 5.754782 | TGCCATGGTGAAGTTATAGATGTT | 58.245 | 37.500 | 14.67 | 0.00 | 0.00 | 2.71 |
2198 | 2815 | 5.104360 | ACTGCCATGGTGAAGTTATAGATGT | 60.104 | 40.000 | 14.67 | 0.00 | 0.00 | 3.06 |
2199 | 2816 | 5.371526 | ACTGCCATGGTGAAGTTATAGATG | 58.628 | 41.667 | 14.67 | 0.00 | 0.00 | 2.90 |
2200 | 2817 | 5.367937 | AGACTGCCATGGTGAAGTTATAGAT | 59.632 | 40.000 | 14.67 | 0.00 | 0.00 | 1.98 |
2201 | 2818 | 4.716784 | AGACTGCCATGGTGAAGTTATAGA | 59.283 | 41.667 | 14.67 | 0.00 | 0.00 | 1.98 |
2202 | 2819 | 4.813161 | CAGACTGCCATGGTGAAGTTATAG | 59.187 | 45.833 | 14.67 | 3.54 | 0.00 | 1.31 |
2203 | 2820 | 4.225042 | ACAGACTGCCATGGTGAAGTTATA | 59.775 | 41.667 | 14.67 | 0.00 | 0.00 | 0.98 |
2204 | 2821 | 3.009473 | ACAGACTGCCATGGTGAAGTTAT | 59.991 | 43.478 | 14.67 | 5.60 | 0.00 | 1.89 |
2205 | 2822 | 2.371841 | ACAGACTGCCATGGTGAAGTTA | 59.628 | 45.455 | 14.67 | 0.00 | 0.00 | 2.24 |
2206 | 2823 | 1.143684 | ACAGACTGCCATGGTGAAGTT | 59.856 | 47.619 | 14.67 | 3.99 | 0.00 | 2.66 |
2207 | 2824 | 0.767375 | ACAGACTGCCATGGTGAAGT | 59.233 | 50.000 | 14.67 | 14.51 | 0.00 | 3.01 |
2208 | 2825 | 1.271001 | TGACAGACTGCCATGGTGAAG | 60.271 | 52.381 | 14.67 | 11.31 | 0.00 | 3.02 |
2209 | 2826 | 0.764271 | TGACAGACTGCCATGGTGAA | 59.236 | 50.000 | 14.67 | 0.00 | 0.00 | 3.18 |
2210 | 2827 | 0.986527 | ATGACAGACTGCCATGGTGA | 59.013 | 50.000 | 14.67 | 0.00 | 0.00 | 4.02 |
2211 | 2828 | 1.092348 | CATGACAGACTGCCATGGTG | 58.908 | 55.000 | 20.61 | 9.43 | 35.34 | 4.17 |
2212 | 2829 | 0.694771 | ACATGACAGACTGCCATGGT | 59.305 | 50.000 | 28.47 | 15.48 | 41.28 | 3.55 |
2213 | 2830 | 1.830279 | AACATGACAGACTGCCATGG | 58.170 | 50.000 | 28.47 | 7.63 | 41.28 | 3.66 |
2214 | 2831 | 3.079578 | AGAAACATGACAGACTGCCATG | 58.920 | 45.455 | 25.02 | 25.02 | 42.32 | 3.66 |
2215 | 2832 | 3.079578 | CAGAAACATGACAGACTGCCAT | 58.920 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2216 | 2833 | 2.104622 | TCAGAAACATGACAGACTGCCA | 59.895 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
2217 | 2834 | 2.771089 | TCAGAAACATGACAGACTGCC | 58.229 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
2218 | 2835 | 4.818534 | TTTCAGAAACATGACAGACTGC | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2219 | 2836 | 7.199541 | AGATTTTCAGAAACATGACAGACTG | 57.800 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2278 | 2895 | 1.717194 | CATGACAAACTTGCCATGGC | 58.283 | 50.000 | 30.54 | 30.54 | 42.84 | 4.40 |
2281 | 2898 | 5.021033 | TGAAAACATGACAAACTTGCCAT | 57.979 | 34.783 | 0.00 | 0.00 | 31.11 | 4.40 |
2282 | 2899 | 4.159321 | TCTGAAAACATGACAAACTTGCCA | 59.841 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
2283 | 2900 | 4.504097 | GTCTGAAAACATGACAAACTTGCC | 59.496 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
2284 | 2901 | 5.101628 | TGTCTGAAAACATGACAAACTTGC | 58.898 | 37.500 | 0.00 | 0.00 | 37.71 | 4.01 |
2313 | 2930 | 7.849816 | ACATTCATGTGATTTGCCATAGCATTT | 60.850 | 33.333 | 0.00 | 0.00 | 44.04 | 2.32 |
2314 | 2931 | 6.407639 | ACATTCATGTGATTTGCCATAGCATT | 60.408 | 34.615 | 0.00 | 0.00 | 44.04 | 3.56 |
2315 | 2932 | 5.069914 | ACATTCATGTGATTTGCCATAGCAT | 59.930 | 36.000 | 0.00 | 0.00 | 44.04 | 3.79 |
2316 | 2933 | 4.403113 | ACATTCATGTGATTTGCCATAGCA | 59.597 | 37.500 | 0.00 | 0.00 | 43.37 | 3.49 |
2317 | 2934 | 4.940463 | ACATTCATGTGATTTGCCATAGC | 58.060 | 39.130 | 0.00 | 0.00 | 40.03 | 2.97 |
2318 | 2935 | 6.334989 | ACAACATTCATGTGATTTGCCATAG | 58.665 | 36.000 | 0.00 | 0.00 | 41.61 | 2.23 |
2319 | 2936 | 6.071503 | TGACAACATTCATGTGATTTGCCATA | 60.072 | 34.615 | 0.00 | 0.00 | 41.61 | 2.74 |
2320 | 2937 | 5.155278 | ACAACATTCATGTGATTTGCCAT | 57.845 | 34.783 | 0.00 | 0.00 | 41.61 | 4.40 |
2321 | 2938 | 4.038883 | TGACAACATTCATGTGATTTGCCA | 59.961 | 37.500 | 0.00 | 0.00 | 41.61 | 4.92 |
2322 | 2939 | 4.558178 | TGACAACATTCATGTGATTTGCC | 58.442 | 39.130 | 0.00 | 0.00 | 41.61 | 4.52 |
2323 | 2940 | 6.807720 | TGTATGACAACATTCATGTGATTTGC | 59.192 | 34.615 | 0.00 | 0.00 | 41.61 | 3.68 |
2324 | 2941 | 8.920509 | ATGTATGACAACATTCATGTGATTTG | 57.079 | 30.769 | 0.00 | 0.00 | 40.92 | 2.32 |
2327 | 2944 | 9.176460 | TGTTATGTATGACAACATTCATGTGAT | 57.824 | 29.630 | 10.81 | 0.00 | 41.89 | 3.06 |
2328 | 2945 | 8.558973 | TGTTATGTATGACAACATTCATGTGA | 57.441 | 30.769 | 10.81 | 0.00 | 41.89 | 3.58 |
2329 | 2946 | 9.623350 | TTTGTTATGTATGACAACATTCATGTG | 57.377 | 29.630 | 10.81 | 0.00 | 41.89 | 3.21 |
2333 | 2950 | 9.138062 | GCAATTTGTTATGTATGACAACATTCA | 57.862 | 29.630 | 2.17 | 0.00 | 40.52 | 2.57 |
2334 | 2951 | 8.594687 | GGCAATTTGTTATGTATGACAACATTC | 58.405 | 33.333 | 2.17 | 0.00 | 40.52 | 2.67 |
2335 | 2952 | 8.093307 | TGGCAATTTGTTATGTATGACAACATT | 58.907 | 29.630 | 2.17 | 4.03 | 40.52 | 2.71 |
2336 | 2953 | 7.609960 | TGGCAATTTGTTATGTATGACAACAT | 58.390 | 30.769 | 2.17 | 7.91 | 42.62 | 2.71 |
2337 | 2954 | 6.986250 | TGGCAATTTGTTATGTATGACAACA | 58.014 | 32.000 | 2.17 | 0.00 | 36.24 | 3.33 |
2338 | 2955 | 8.382130 | CAATGGCAATTTGTTATGTATGACAAC | 58.618 | 33.333 | 0.00 | 0.00 | 36.24 | 3.32 |
2339 | 2956 | 8.093307 | ACAATGGCAATTTGTTATGTATGACAA | 58.907 | 29.630 | 0.70 | 0.00 | 33.64 | 3.18 |
2340 | 2957 | 7.609960 | ACAATGGCAATTTGTTATGTATGACA | 58.390 | 30.769 | 0.70 | 0.00 | 33.64 | 3.58 |
2341 | 2958 | 8.477984 | AACAATGGCAATTTGTTATGTATGAC | 57.522 | 30.769 | 15.55 | 0.00 | 43.52 | 3.06 |
2346 | 2963 | 9.153721 | CTCATAAACAATGGCAATTTGTTATGT | 57.846 | 29.630 | 16.98 | 7.01 | 44.32 | 2.29 |
2347 | 2964 | 8.117988 | GCTCATAAACAATGGCAATTTGTTATG | 58.882 | 33.333 | 16.98 | 17.65 | 44.32 | 1.90 |
2348 | 2965 | 7.823310 | TGCTCATAAACAATGGCAATTTGTTAT | 59.177 | 29.630 | 16.98 | 11.06 | 44.32 | 1.89 |
2349 | 2966 | 7.157347 | TGCTCATAAACAATGGCAATTTGTTA | 58.843 | 30.769 | 16.98 | 8.29 | 44.32 | 2.41 |
2350 | 2967 | 5.996513 | TGCTCATAAACAATGGCAATTTGTT | 59.003 | 32.000 | 12.25 | 12.25 | 46.38 | 2.83 |
2351 | 2968 | 5.549347 | TGCTCATAAACAATGGCAATTTGT | 58.451 | 33.333 | 0.70 | 0.70 | 38.22 | 2.83 |
2352 | 2969 | 6.402766 | CCTTGCTCATAAACAATGGCAATTTG | 60.403 | 38.462 | 11.57 | 0.00 | 44.02 | 2.32 |
2353 | 2970 | 5.644636 | CCTTGCTCATAAACAATGGCAATTT | 59.355 | 36.000 | 11.57 | 0.00 | 44.02 | 1.82 |
2354 | 2971 | 5.046448 | TCCTTGCTCATAAACAATGGCAATT | 60.046 | 36.000 | 11.57 | 0.00 | 44.02 | 2.32 |
2355 | 2972 | 4.467082 | TCCTTGCTCATAAACAATGGCAAT | 59.533 | 37.500 | 11.57 | 0.00 | 44.02 | 3.56 |
2356 | 2973 | 3.831333 | TCCTTGCTCATAAACAATGGCAA | 59.169 | 39.130 | 0.00 | 11.00 | 43.45 | 4.52 |
2357 | 2974 | 3.193267 | GTCCTTGCTCATAAACAATGGCA | 59.807 | 43.478 | 0.00 | 0.00 | 38.91 | 4.92 |
2358 | 2975 | 3.193267 | TGTCCTTGCTCATAAACAATGGC | 59.807 | 43.478 | 0.00 | 0.00 | 36.15 | 4.40 |
2359 | 2976 | 5.389859 | TTGTCCTTGCTCATAAACAATGG | 57.610 | 39.130 | 0.00 | 0.00 | 36.15 | 3.16 |
2360 | 2977 | 6.680810 | TCTTTGTCCTTGCTCATAAACAATG | 58.319 | 36.000 | 0.00 | 0.00 | 36.88 | 2.82 |
2361 | 2978 | 6.899393 | TCTTTGTCCTTGCTCATAAACAAT | 57.101 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2362 | 2979 | 6.489700 | TCATCTTTGTCCTTGCTCATAAACAA | 59.510 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2363 | 2980 | 6.003326 | TCATCTTTGTCCTTGCTCATAAACA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2364 | 2981 | 6.500684 | TCATCTTTGTCCTTGCTCATAAAC | 57.499 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
2365 | 2982 | 7.523293 | TTTCATCTTTGTCCTTGCTCATAAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2366 | 2983 | 7.523293 | TTTTCATCTTTGTCCTTGCTCATAA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2367 | 2984 | 7.523293 | TTTTTCATCTTTGTCCTTGCTCATA | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2368 | 2985 | 6.409524 | TTTTTCATCTTTGTCCTTGCTCAT | 57.590 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2369 | 2986 | 5.850557 | TTTTTCATCTTTGTCCTTGCTCA | 57.149 | 34.783 | 0.00 | 0.00 | 0.00 | 4.26 |
2391 | 3008 | 9.303537 | CAAATTTTGCAAAGTTCATGGATTTTT | 57.696 | 25.926 | 18.78 | 0.00 | 0.00 | 1.94 |
2392 | 3009 | 8.859517 | CAAATTTTGCAAAGTTCATGGATTTT | 57.140 | 26.923 | 18.78 | 0.00 | 0.00 | 1.82 |
2456 | 3073 | 9.630098 | GTCTTGTTCAATTGTCATTTGTCATAT | 57.370 | 29.630 | 5.13 | 0.00 | 0.00 | 1.78 |
2457 | 3074 | 8.628280 | TGTCTTGTTCAATTGTCATTTGTCATA | 58.372 | 29.630 | 5.13 | 0.00 | 0.00 | 2.15 |
2458 | 3075 | 7.436080 | GTGTCTTGTTCAATTGTCATTTGTCAT | 59.564 | 33.333 | 5.13 | 0.00 | 0.00 | 3.06 |
2459 | 3076 | 6.751425 | GTGTCTTGTTCAATTGTCATTTGTCA | 59.249 | 34.615 | 5.13 | 5.96 | 0.00 | 3.58 |
2460 | 3077 | 6.751425 | TGTGTCTTGTTCAATTGTCATTTGTC | 59.249 | 34.615 | 5.13 | 4.00 | 0.00 | 3.18 |
2461 | 3078 | 6.629128 | TGTGTCTTGTTCAATTGTCATTTGT | 58.371 | 32.000 | 5.13 | 0.00 | 0.00 | 2.83 |
2462 | 3079 | 7.522901 | TTGTGTCTTGTTCAATTGTCATTTG | 57.477 | 32.000 | 5.13 | 1.72 | 0.00 | 2.32 |
2463 | 3080 | 8.545229 | TTTTGTGTCTTGTTCAATTGTCATTT | 57.455 | 26.923 | 5.13 | 0.00 | 0.00 | 2.32 |
2464 | 3081 | 8.442384 | GTTTTTGTGTCTTGTTCAATTGTCATT | 58.558 | 29.630 | 5.13 | 0.00 | 0.00 | 2.57 |
2465 | 3082 | 7.601886 | TGTTTTTGTGTCTTGTTCAATTGTCAT | 59.398 | 29.630 | 5.13 | 0.00 | 0.00 | 3.06 |
2466 | 3083 | 6.925718 | TGTTTTTGTGTCTTGTTCAATTGTCA | 59.074 | 30.769 | 5.13 | 3.83 | 0.00 | 3.58 |
2467 | 3084 | 7.328249 | TCTGTTTTTGTGTCTTGTTCAATTGTC | 59.672 | 33.333 | 5.13 | 1.16 | 0.00 | 3.18 |
2468 | 3085 | 7.151308 | TCTGTTTTTGTGTCTTGTTCAATTGT | 58.849 | 30.769 | 5.13 | 0.00 | 0.00 | 2.71 |
2469 | 3086 | 7.579589 | TCTGTTTTTGTGTCTTGTTCAATTG | 57.420 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2470 | 3087 | 8.600449 | TTTCTGTTTTTGTGTCTTGTTCAATT | 57.400 | 26.923 | 0.00 | 0.00 | 0.00 | 2.32 |
2471 | 3088 | 8.776376 | ATTTCTGTTTTTGTGTCTTGTTCAAT | 57.224 | 26.923 | 0.00 | 0.00 | 0.00 | 2.57 |
2472 | 3089 | 8.600449 | AATTTCTGTTTTTGTGTCTTGTTCAA | 57.400 | 26.923 | 0.00 | 0.00 | 0.00 | 2.69 |
2473 | 3090 | 8.600449 | AAATTTCTGTTTTTGTGTCTTGTTCA | 57.400 | 26.923 | 0.00 | 0.00 | 0.00 | 3.18 |
2474 | 3091 | 9.528847 | GAAAATTTCTGTTTTTGTGTCTTGTTC | 57.471 | 29.630 | 0.00 | 0.00 | 31.80 | 3.18 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.