Multiple sequence alignment - TraesCS5B01G517400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G517400 chr5B 100.000 7234 0 0 1 7234 680859332 680852099 0.000000e+00 13359
1 TraesCS5B01G517400 chr5D 94.595 3774 130 17 2855 6570 539153981 539150224 0.000000e+00 5771
2 TraesCS5B01G517400 chr5D 95.458 1365 49 6 1401 2764 539155334 539153982 0.000000e+00 2165
3 TraesCS5B01G517400 chr5D 84.889 814 43 26 625 1400 539156145 539155374 0.000000e+00 749
4 TraesCS5B01G517400 chr5D 85.614 285 20 9 6967 7234 539149527 539149247 5.530000e-71 279
5 TraesCS5B01G517400 chr4A 95.343 3328 132 12 3251 6568 629376008 629379322 0.000000e+00 5265
6 TraesCS5B01G517400 chr4A 94.057 774 37 5 2479 3250 629375116 629375882 0.000000e+00 1166
7 TraesCS5B01G517400 chr4A 88.410 742 62 15 1692 2431 629374402 629375121 0.000000e+00 872
8 TraesCS5B01G517400 chr4A 87.859 626 34 11 793 1388 629373456 629374069 0.000000e+00 697
9 TraesCS5B01G517400 chr4A 84.571 700 75 19 1 691 629372744 629373419 0.000000e+00 664
10 TraesCS5B01G517400 chr4A 93.000 100 6 1 2764 2862 631960050 631960149 2.100000e-30 145
11 TraesCS5B01G517400 chr4B 92.233 103 6 2 2765 2865 654204884 654204986 2.100000e-30 145
12 TraesCS5B01G517400 chr4B 92.079 101 6 2 2760 2858 654204984 654204884 2.720000e-29 141
13 TraesCS5B01G517400 chr7D 92.929 99 4 3 2763 2859 179498962 179499059 2.720000e-29 141
14 TraesCS5B01G517400 chr3B 92.157 102 5 2 2762 2862 605016269 605016368 2.720000e-29 141
15 TraesCS5B01G517400 chr3B 92.135 89 6 1 5908 5995 565270281 565270193 2.740000e-24 124
16 TraesCS5B01G517400 chr3B 91.011 89 7 1 5905 5992 565270193 565270281 1.270000e-22 119
17 TraesCS5B01G517400 chr6D 91.753 97 6 2 2768 2862 62122827 62122923 4.550000e-27 134
18 TraesCS5B01G517400 chr1A 90.196 102 8 2 2763 2862 508966239 508966138 1.640000e-26 132
19 TraesCS5B01G517400 chr4D 94.186 86 4 1 5908 5992 450203791 450203706 5.890000e-26 130
20 TraesCS5B01G517400 chr3A 90.000 100 9 1 2762 2860 638987266 638987365 2.120000e-25 128
21 TraesCS5B01G517400 chr2B 91.954 87 6 1 5907 5992 764537698 764537612 3.540000e-23 121
22 TraesCS5B01G517400 chr2B 91.954 87 6 1 5908 5993 764537612 764537698 3.540000e-23 121
23 TraesCS5B01G517400 chr2A 91.954 87 4 2 5908 5993 569191476 569191392 1.270000e-22 119
24 TraesCS5B01G517400 chr6B 85.981 107 10 5 5893 5995 503544676 503544571 7.670000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G517400 chr5B 680852099 680859332 7233 True 13359.0 13359 100.000 1 7234 1 chr5B.!!$R1 7233
1 TraesCS5B01G517400 chr5D 539149247 539156145 6898 True 2241.0 5771 90.139 625 7234 4 chr5D.!!$R1 6609
2 TraesCS5B01G517400 chr4A 629372744 629379322 6578 False 1732.8 5265 90.048 1 6568 5 chr4A.!!$F2 6567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 761 0.108756 GTGAACGTCTCCTACAGGCC 60.109 60.000 0.0 0.0 34.44 5.19 F
722 766 0.541863 CGTCTCCTACAGGCCCATTT 59.458 55.000 0.0 0.0 34.44 2.32 F
967 1056 0.605589 GTCCAAAACCCCAGACCGAG 60.606 60.000 0.0 0.0 0.00 4.63 F
1092 1190 1.598130 GCTGCTCAACCTCACCGTT 60.598 57.895 0.0 0.0 0.00 4.44 F
2778 3017 0.681733 CATGTACTCCCTCCATCCCG 59.318 60.000 0.0 0.0 0.00 5.14 F
3123 3364 0.179156 GACTGCAAATCATGGCACCG 60.179 55.000 0.0 0.0 35.86 4.94 F
3755 4125 0.534203 TGGGTCACAAACTTCTCCGC 60.534 55.000 0.0 0.0 0.00 5.54 F
5140 5517 1.123928 CTATCAGGGCGGTTCCTTCT 58.876 55.000 0.0 0.0 34.31 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2459 1.270550 GGGTGTTCCTGCAAGAATGTG 59.729 52.381 0.13 0.00 34.07 3.21 R
2599 2838 1.338674 CCGAACAGGAACCAGCATACA 60.339 52.381 0.00 0.00 45.00 2.29 R
2628 2867 2.258109 GGAAGGTCCTGTACAACCTCT 58.742 52.381 17.65 9.51 45.21 3.69 R
2865 3104 4.053295 CAAGAGGAAGGCAACACAAAATG 58.947 43.478 0.00 0.00 41.41 2.32 R
3666 4034 0.103572 TAGATGGGGTTCGTTAGCGC 59.896 55.000 0.00 0.00 38.14 5.92 R
4659 5036 0.927537 TGCAGTTCTTTCACGTGACG 59.072 50.000 19.90 12.67 0.00 4.35 R
5221 5598 0.108138 GAACCACGGTAGCTGCTGAT 60.108 55.000 18.32 0.00 0.00 2.90 R
6574 6986 0.109597 CCCGTCAAAATGCACTCAGC 60.110 55.000 0.00 0.00 45.96 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.209703 GCATTGTCATCAACACCAAAACAG 59.790 41.667 0.00 0.00 37.70 3.16
33 34 5.977129 GTCATCAACACCAAAACAGTTAAGG 59.023 40.000 3.01 3.01 0.00 2.69
34 35 4.379339 TCAACACCAAAACAGTTAAGGC 57.621 40.909 4.25 0.00 0.00 4.35
35 36 3.764434 TCAACACCAAAACAGTTAAGGCA 59.236 39.130 4.25 0.00 0.00 4.75
36 37 4.111916 CAACACCAAAACAGTTAAGGCAG 58.888 43.478 4.25 1.24 0.00 4.85
37 38 2.693074 ACACCAAAACAGTTAAGGCAGG 59.307 45.455 4.25 0.00 0.00 4.85
57 58 1.486310 GAAATGCCCTTTCAATCCCCC 59.514 52.381 4.47 0.00 42.42 5.40
73 74 1.266178 CCCCCTTTTGGATGGTTGAC 58.734 55.000 0.00 0.00 44.07 3.18
81 82 5.365403 TTTTGGATGGTTGACGACAATAC 57.635 39.130 3.18 1.31 38.32 1.89
84 85 3.749088 TGGATGGTTGACGACAATACAAC 59.251 43.478 3.18 5.50 41.79 3.32
85 86 3.749088 GGATGGTTGACGACAATACAACA 59.251 43.478 3.18 0.00 43.51 3.33
90 91 7.260558 TGGTTGACGACAATACAACAATTTA 57.739 32.000 3.18 0.00 43.51 1.40
107 108 5.578727 ACAATTTACACAAAAATGTGCACGT 59.421 32.000 13.13 9.52 43.13 4.49
109 110 1.919918 ACACAAAAATGTGCACGTGG 58.080 45.000 18.88 5.59 43.13 4.94
111 112 2.423892 ACACAAAAATGTGCACGTGGTA 59.576 40.909 18.88 0.00 43.13 3.25
118 119 1.450025 TGTGCACGTGGTACAAACAA 58.550 45.000 18.88 0.00 44.16 2.83
123 124 3.128764 TGCACGTGGTACAAACAAAATGA 59.871 39.130 18.88 0.00 44.16 2.57
124 125 3.484285 GCACGTGGTACAAACAAAATGAC 59.516 43.478 18.88 0.00 44.16 3.06
128 129 4.967575 CGTGGTACAAACAAAATGACTGTC 59.032 41.667 0.00 0.00 44.16 3.51
131 132 5.416013 TGGTACAAACAAAATGACTGTCACA 59.584 36.000 13.50 0.00 31.92 3.58
132 133 6.071896 TGGTACAAACAAAATGACTGTCACAA 60.072 34.615 13.50 0.00 31.92 3.33
133 134 6.978080 GGTACAAACAAAATGACTGTCACAAT 59.022 34.615 13.50 0.00 0.00 2.71
134 135 7.491048 GGTACAAACAAAATGACTGTCACAATT 59.509 33.333 13.50 6.10 0.00 2.32
135 136 7.903995 ACAAACAAAATGACTGTCACAATTT 57.096 28.000 13.50 11.62 0.00 1.82
136 137 8.321650 ACAAACAAAATGACTGTCACAATTTT 57.678 26.923 13.50 12.86 0.00 1.82
137 138 8.782144 ACAAACAAAATGACTGTCACAATTTTT 58.218 25.926 13.50 12.52 0.00 1.94
374 378 9.875708 AAAAAGGGTAGGCATGAAACATATATA 57.124 29.630 0.00 0.00 0.00 0.86
378 382 9.466497 AGGGTAGGCATGAAACATATATATTTG 57.534 33.333 0.00 2.01 0.00 2.32
441 445 6.976934 ATGAGTACACCAAAAATGTTCCTT 57.023 33.333 0.00 0.00 0.00 3.36
445 449 7.942341 TGAGTACACCAAAAATGTTCCTTCTAT 59.058 33.333 0.00 0.00 0.00 1.98
526 530 7.920160 AAAATAAACCCGAAGAATACCGTAA 57.080 32.000 0.00 0.00 0.00 3.18
535 539 6.019318 CCCGAAGAATACCGTAATACAAACAG 60.019 42.308 0.00 0.00 0.00 3.16
542 546 4.320870 ACCGTAATACAAACAGTGGGAAG 58.679 43.478 0.00 0.00 0.00 3.46
547 551 6.347402 CGTAATACAAACAGTGGGAAGACAAG 60.347 42.308 0.00 0.00 0.00 3.16
552 556 3.199880 ACAGTGGGAAGACAAGAACAG 57.800 47.619 0.00 0.00 0.00 3.16
579 584 2.989166 GGAAACTTGCAATTGCTACAGC 59.011 45.455 29.37 14.71 42.66 4.40
583 588 1.980844 CTTGCAATTGCTACAGCGTTG 59.019 47.619 29.37 6.34 45.83 4.10
585 590 1.330306 GCAATTGCTACAGCGTTGTG 58.670 50.000 23.21 6.34 45.83 3.33
635 640 3.428180 CGATACCTGATAGGAATCGGCAG 60.428 52.174 1.13 0.00 37.67 4.85
636 641 0.394565 ACCTGATAGGAATCGGCAGC 59.605 55.000 1.13 0.00 37.67 5.25
674 679 2.995258 CGCGGTTTTTGTTAGGCTACTA 59.005 45.455 0.00 0.00 0.00 1.82
687 731 9.444600 TTGTTAGGCTACTAGAAAAACAATAGG 57.555 33.333 0.00 0.00 0.00 2.57
688 732 7.551617 TGTTAGGCTACTAGAAAAACAATAGGC 59.448 37.037 0.00 0.00 35.93 3.93
689 733 5.437946 AGGCTACTAGAAAAACAATAGGCC 58.562 41.667 0.00 0.00 36.23 5.19
690 734 4.579340 GGCTACTAGAAAAACAATAGGCCC 59.421 45.833 0.00 0.00 31.06 5.80
691 735 5.437946 GCTACTAGAAAAACAATAGGCCCT 58.562 41.667 0.00 0.00 0.00 5.19
692 736 5.886474 GCTACTAGAAAAACAATAGGCCCTT 59.114 40.000 0.00 0.00 0.00 3.95
693 737 6.038382 GCTACTAGAAAAACAATAGGCCCTTC 59.962 42.308 0.00 0.00 0.00 3.46
694 738 5.887754 ACTAGAAAAACAATAGGCCCTTCA 58.112 37.500 0.00 0.00 0.00 3.02
695 739 6.311735 ACTAGAAAAACAATAGGCCCTTCAA 58.688 36.000 0.00 0.00 0.00 2.69
696 740 5.468540 AGAAAAACAATAGGCCCTTCAAC 57.531 39.130 0.00 0.00 0.00 3.18
697 741 5.147767 AGAAAAACAATAGGCCCTTCAACT 58.852 37.500 0.00 0.00 0.00 3.16
698 742 4.871933 AAAACAATAGGCCCTTCAACTG 57.128 40.909 0.00 0.00 0.00 3.16
699 743 3.525800 AACAATAGGCCCTTCAACTGT 57.474 42.857 0.00 0.00 0.00 3.55
700 744 2.795329 ACAATAGGCCCTTCAACTGTG 58.205 47.619 0.00 0.00 0.00 3.66
701 745 2.375174 ACAATAGGCCCTTCAACTGTGA 59.625 45.455 0.00 0.00 0.00 3.58
702 746 3.181434 ACAATAGGCCCTTCAACTGTGAA 60.181 43.478 0.00 0.00 41.57 3.18
703 747 2.561478 TAGGCCCTTCAACTGTGAAC 57.439 50.000 0.00 0.00 38.88 3.18
704 748 0.535102 AGGCCCTTCAACTGTGAACG 60.535 55.000 0.00 0.00 38.88 3.95
705 749 0.818040 GGCCCTTCAACTGTGAACGT 60.818 55.000 0.00 0.00 38.88 3.99
706 750 0.586802 GCCCTTCAACTGTGAACGTC 59.413 55.000 0.00 0.00 38.88 4.34
707 751 1.810412 GCCCTTCAACTGTGAACGTCT 60.810 52.381 0.00 0.00 38.88 4.18
708 752 2.135933 CCCTTCAACTGTGAACGTCTC 58.864 52.381 0.00 0.00 38.88 3.36
709 753 2.135933 CCTTCAACTGTGAACGTCTCC 58.864 52.381 0.00 0.00 38.88 3.71
710 754 2.224066 CCTTCAACTGTGAACGTCTCCT 60.224 50.000 0.00 0.00 38.88 3.69
711 755 3.005472 CCTTCAACTGTGAACGTCTCCTA 59.995 47.826 0.00 0.00 38.88 2.94
712 756 3.637998 TCAACTGTGAACGTCTCCTAC 57.362 47.619 0.00 0.00 0.00 3.18
713 757 2.953648 TCAACTGTGAACGTCTCCTACA 59.046 45.455 0.00 0.00 0.00 2.74
714 758 3.004419 TCAACTGTGAACGTCTCCTACAG 59.996 47.826 12.85 12.85 43.20 2.74
715 759 1.887198 ACTGTGAACGTCTCCTACAGG 59.113 52.381 16.51 0.00 42.18 4.00
716 760 0.601558 TGTGAACGTCTCCTACAGGC 59.398 55.000 0.00 0.00 34.44 4.85
717 761 0.108756 GTGAACGTCTCCTACAGGCC 60.109 60.000 0.00 0.00 34.44 5.19
718 762 1.255667 TGAACGTCTCCTACAGGCCC 61.256 60.000 0.00 0.00 34.44 5.80
719 763 1.229082 AACGTCTCCTACAGGCCCA 60.229 57.895 0.00 0.00 34.44 5.36
720 764 0.617820 AACGTCTCCTACAGGCCCAT 60.618 55.000 0.00 0.00 34.44 4.00
721 765 0.617820 ACGTCTCCTACAGGCCCATT 60.618 55.000 0.00 0.00 34.44 3.16
722 766 0.541863 CGTCTCCTACAGGCCCATTT 59.458 55.000 0.00 0.00 34.44 2.32
723 767 1.743772 CGTCTCCTACAGGCCCATTTG 60.744 57.143 0.00 0.00 34.44 2.32
724 768 1.559682 GTCTCCTACAGGCCCATTTGA 59.440 52.381 0.00 0.00 34.44 2.69
766 810 2.284921 TCCTCACTGGGCTGGGAG 60.285 66.667 3.87 3.87 36.20 4.30
767 811 2.284921 CCTCACTGGGCTGGGAGA 60.285 66.667 10.89 0.00 0.00 3.71
769 813 2.997315 TCACTGGGCTGGGAGACG 60.997 66.667 0.00 0.00 0.00 4.18
770 814 4.767255 CACTGGGCTGGGAGACGC 62.767 72.222 0.00 0.00 0.00 5.19
772 816 4.463879 CTGGGCTGGGAGACGCAG 62.464 72.222 10.65 10.65 45.35 5.18
776 820 4.704833 GCTGGGAGACGCAGGCAA 62.705 66.667 15.37 0.00 43.28 4.52
777 821 2.743928 CTGGGAGACGCAGGCAAC 60.744 66.667 7.73 0.00 40.11 4.17
818 862 1.145945 AGGATAGCCGAGTGGATGAGA 59.854 52.381 0.00 0.00 39.96 3.27
819 863 1.543802 GGATAGCCGAGTGGATGAGAG 59.456 57.143 0.00 0.00 37.49 3.20
825 869 2.039624 AGTGGATGAGAGCCCCGT 59.960 61.111 0.00 0.00 0.00 5.28
826 870 2.022240 GAGTGGATGAGAGCCCCGTC 62.022 65.000 0.00 0.00 0.00 4.79
965 1054 1.964373 CGTCCAAAACCCCAGACCG 60.964 63.158 0.00 0.00 0.00 4.79
967 1056 0.605589 GTCCAAAACCCCAGACCGAG 60.606 60.000 0.00 0.00 0.00 4.63
997 1086 4.851179 CGCCGGCTAGGGTTTCCC 62.851 72.222 26.68 0.00 45.90 3.97
1092 1190 1.598130 GCTGCTCAACCTCACCGTT 60.598 57.895 0.00 0.00 0.00 4.44
1129 1227 4.907034 CCGTCGCCGACATCCTCG 62.907 72.222 18.40 1.53 42.54 4.63
1340 1449 1.951602 TCTTCGTCGTCAAGAGGTTCA 59.048 47.619 0.00 0.00 36.24 3.18
1353 1462 2.438434 GTTCATGCCCCGACCCTG 60.438 66.667 0.00 0.00 0.00 4.45
1360 1471 2.670148 GCCCCGACCCTGACTGATT 61.670 63.158 0.00 0.00 0.00 2.57
1420 1570 2.094675 CTTGCGGAATTCCCAATCACT 58.905 47.619 19.01 0.00 34.14 3.41
1486 1643 2.770164 ACTGAAATCGTCCCTGGAAG 57.230 50.000 0.00 0.00 0.00 3.46
1487 1644 2.257207 ACTGAAATCGTCCCTGGAAGA 58.743 47.619 4.28 4.28 37.08 2.87
1514 1672 3.005050 CGGAATGGAATGGAATGTCATGG 59.995 47.826 0.00 0.00 0.00 3.66
1530 1688 6.741992 TGTCATGGTGATTTTGTATCTGAC 57.258 37.500 0.00 0.00 0.00 3.51
1564 1722 5.312895 TGGCATTATATCGTGGTTAAGCAT 58.687 37.500 11.06 0.00 0.00 3.79
1589 1747 8.483307 TTTCCCTACACAACGAAGATTATTAC 57.517 34.615 0.00 0.00 0.00 1.89
1689 1894 5.902613 TGACCATTCAATTGGCTTTCTAG 57.097 39.130 5.42 0.00 40.68 2.43
1700 1938 2.106511 TGGCTTTCTAGTGGTCTTTGCT 59.893 45.455 0.00 0.00 0.00 3.91
1720 1958 3.619038 GCTCTGTGTATTACTCTGTTGCC 59.381 47.826 0.00 0.00 0.00 4.52
1726 1964 4.325472 GTGTATTACTCTGTTGCCGTGTAC 59.675 45.833 0.00 0.00 0.00 2.90
1749 1987 9.930693 GTACTTCAGAAATTCCCTGTATATAGG 57.069 37.037 8.54 8.54 37.59 2.57
1752 1990 9.717942 CTTCAGAAATTCCCTGTATATAGGAAG 57.282 37.037 16.69 5.48 42.71 3.46
1808 2046 7.817418 TGTTTGCTAGTTCTTATTTTCCTGT 57.183 32.000 0.00 0.00 0.00 4.00
1880 2118 8.730680 GTTGATTAAGACATGTTAGTGTGGAAT 58.269 33.333 0.00 0.00 31.16 3.01
2020 2259 6.449635 ACTGTTTGTTGCTGATCTTACAAA 57.550 33.333 9.55 9.55 37.95 2.83
2087 2326 3.977134 TGCCTACCGGTAAACATTACA 57.023 42.857 16.65 3.53 0.00 2.41
2094 2333 5.890424 ACCGGTAAACATTACATTTGAGG 57.110 39.130 4.49 0.00 0.00 3.86
2178 2417 4.524316 TCTGAGATGCAAATTTGTTGGG 57.476 40.909 19.03 4.64 0.00 4.12
2220 2459 8.015658 AGAGTGTGCATTTCGTAATAAAACTTC 58.984 33.333 0.00 0.00 0.00 3.01
2312 2551 8.635765 TTTTTGCAGTTCTAGATTCCTTATGT 57.364 30.769 0.00 0.00 0.00 2.29
2388 2627 7.269316 GGGAGTGGTTTTTCTTTGAATTGTTA 58.731 34.615 0.00 0.00 0.00 2.41
2582 2821 6.765915 AAGAAAATAACTCTTGAGCATCCC 57.234 37.500 0.00 0.00 31.86 3.85
2599 2838 5.315914 AGCATCCCAGGGGTATATATTGTTT 59.684 40.000 5.33 0.00 36.47 2.83
2628 2867 5.818857 GCTGGTTCCTGTTCGGTTTATATAA 59.181 40.000 0.00 0.00 0.00 0.98
2643 2882 7.650903 CGGTTTATATAAGAGGTTGTACAGGAC 59.349 40.741 0.00 0.00 0.00 3.85
2778 3017 0.681733 CATGTACTCCCTCCATCCCG 59.318 60.000 0.00 0.00 0.00 5.14
2785 3024 2.438392 ACTCCCTCCATCCCGAAATAAC 59.562 50.000 0.00 0.00 0.00 1.89
2865 3104 1.819903 GGACGGAGGGAGTATATGCTC 59.180 57.143 12.04 12.04 34.89 4.26
3111 3352 1.142870 AGTTTGGCCTGTAGACTGCAA 59.857 47.619 3.32 0.00 0.00 4.08
3123 3364 0.179156 GACTGCAAATCATGGCACCG 60.179 55.000 0.00 0.00 35.86 4.94
3129 3370 2.297033 GCAAATCATGGCACCGGATATT 59.703 45.455 9.46 0.00 0.00 1.28
3145 3386 5.453339 CCGGATATTTTTCTGCTAGGAGTGA 60.453 44.000 11.39 0.00 0.00 3.41
3162 3403 7.039313 AGGAGTGACATTTTAAACTGAAACC 57.961 36.000 12.06 7.77 0.00 3.27
3181 3422 4.320608 ACCTGAAATTTGATTGCGTTGT 57.679 36.364 0.00 0.00 0.00 3.32
3183 3424 5.115480 ACCTGAAATTTGATTGCGTTGTTT 58.885 33.333 0.00 0.00 0.00 2.83
3206 3447 3.006112 TCTGTTTGCCTGTTTGGTGTA 57.994 42.857 0.00 0.00 38.35 2.90
3289 3655 9.224267 GATACTTGGACCTATACGTATTCACTA 57.776 37.037 14.33 0.00 0.00 2.74
3319 3685 6.518369 GCCCACTAAAACTTATCAAGGCTTTT 60.518 38.462 0.00 0.00 33.86 2.27
3320 3686 7.090808 CCCACTAAAACTTATCAAGGCTTTTC 58.909 38.462 0.00 0.00 0.00 2.29
3322 3688 8.141268 CCACTAAAACTTATCAAGGCTTTTCAA 58.859 33.333 0.00 0.00 0.00 2.69
3325 3691 5.468540 AACTTATCAAGGCTTTTCAACCC 57.531 39.130 0.00 0.00 0.00 4.11
3326 3692 4.479158 ACTTATCAAGGCTTTTCAACCCA 58.521 39.130 0.00 0.00 0.00 4.51
3426 3792 0.586319 AAACAGTGCCGACAATCACG 59.414 50.000 0.00 0.00 38.19 4.35
3428 3794 0.944311 ACAGTGCCGACAATCACGAC 60.944 55.000 0.00 0.00 38.19 4.34
3451 3817 5.674035 ACTCTTCTTTCCTCCCATCCAATAT 59.326 40.000 0.00 0.00 0.00 1.28
3482 3848 3.993081 CAGAAAGGCTGTGTCTTACTGAG 59.007 47.826 0.00 0.00 39.85 3.35
3488 3854 3.877508 GGCTGTGTCTTACTGAGTTGTTT 59.122 43.478 0.00 0.00 0.00 2.83
3499 3865 4.718961 ACTGAGTTGTTTTGCTATCCTGT 58.281 39.130 0.00 0.00 0.00 4.00
3504 3870 3.658757 TGTTTTGCTATCCTGTTTGGC 57.341 42.857 0.00 0.00 35.26 4.52
3517 3883 4.286549 TCCTGTTTGGCCATTCATTTGATT 59.713 37.500 6.09 0.00 35.26 2.57
3525 3891 5.187381 TGGCCATTCATTTGATTTGCTCTAA 59.813 36.000 0.00 0.00 0.00 2.10
3577 3943 7.524294 AGTGTAGCTGTTTTTGAATTTTGTG 57.476 32.000 0.00 0.00 0.00 3.33
3600 3966 8.205512 TGTGTACTGGTTGATTTAGTGTCTTAA 58.794 33.333 0.00 0.00 0.00 1.85
3666 4034 2.229062 TCTCCAGTTCTCTGTAAGCACG 59.771 50.000 0.00 0.00 39.82 5.34
3698 4068 1.622607 CCATCTAACGGGAGGTGGCA 61.623 60.000 5.30 0.00 40.83 4.92
3711 4081 1.220749 GTGGCACTGCTCCCGATTA 59.779 57.895 11.13 0.00 0.00 1.75
3755 4125 0.534203 TGGGTCACAAACTTCTCCGC 60.534 55.000 0.00 0.00 0.00 5.54
3777 4147 4.096984 GCATTGCTGTAGCTTATGTCCTTT 59.903 41.667 15.64 0.00 42.66 3.11
3780 4150 4.253685 TGCTGTAGCTTATGTCCTTTGTC 58.746 43.478 5.38 0.00 42.66 3.18
3792 4162 2.626266 GTCCTTTGTCCGTTTTTCCCAT 59.374 45.455 0.00 0.00 0.00 4.00
3978 4348 9.899661 ATATACAGAGCCACATAAACTACAAAA 57.100 29.630 0.00 0.00 0.00 2.44
3994 4364 7.907214 ACTACAAAAACCAGATGCTTACTAG 57.093 36.000 0.00 0.00 0.00 2.57
4004 4374 2.618165 GCTTACTAGCGCCATTCCC 58.382 57.895 2.29 0.00 37.71 3.97
4039 4414 4.717279 AGCTTCAGGGGTTAAGTGTTTA 57.283 40.909 0.00 0.00 0.00 2.01
4101 4477 2.227388 CAGATGCTCAACCTTTGTCCAC 59.773 50.000 0.00 0.00 0.00 4.02
4107 4483 2.023673 TCAACCTTTGTCCACTGCTTG 58.976 47.619 0.00 0.00 0.00 4.01
4248 4624 3.149196 ACATAAAGCATATTCCAGGGCG 58.851 45.455 0.00 0.00 0.00 6.13
4336 4713 3.766591 TGCATAGAAGATAGCCTCTAGCC 59.233 47.826 0.00 0.00 45.47 3.93
4346 4723 5.787494 AGATAGCCTCTAGCCATTCCATTTA 59.213 40.000 0.00 0.00 45.47 1.40
4347 4724 4.363991 AGCCTCTAGCCATTCCATTTAG 57.636 45.455 0.00 0.00 45.47 1.85
4456 4833 4.375305 CGTTTCCTCGTACAAACTTAACGG 60.375 45.833 0.00 0.00 37.24 4.44
4484 4861 5.815581 ACATAATACTTTGAGGAGTTGGCA 58.184 37.500 0.00 0.00 0.00 4.92
4592 4969 4.359706 GCCGGGTTAAAAATATTGCAGAG 58.640 43.478 2.18 0.00 0.00 3.35
4710 5087 4.929479 AGGGGTAATGATGCAAGTTTACA 58.071 39.130 14.26 0.00 0.00 2.41
4798 5175 2.227388 CTGTGCCCAGTTTCAGTGATTC 59.773 50.000 0.00 0.00 33.80 2.52
5025 5402 6.546772 TCTGCAATCCAGCATCATTATGTAAA 59.453 34.615 0.00 0.00 44.68 2.01
5029 5406 7.327761 GCAATCCAGCATCATTATGTAAATCAC 59.672 37.037 0.00 0.00 35.38 3.06
5045 5422 4.380841 AATCACGCGAGACTAACCATTA 57.619 40.909 15.93 0.00 0.00 1.90
5140 5517 1.123928 CTATCAGGGCGGTTCCTTCT 58.876 55.000 0.00 0.00 34.31 2.85
5189 5566 3.026630 CTGTTTCGTCACAGCCTTCTA 57.973 47.619 4.21 0.00 37.96 2.10
5221 5598 2.650116 GCTTCCTCCTCCACGAGCA 61.650 63.158 0.00 0.00 0.00 4.26
5450 5827 0.748005 CCAGCCATTTCCACTACCCG 60.748 60.000 0.00 0.00 0.00 5.28
5471 5848 2.573369 CTGCTCCTCCTCCAATTGATG 58.427 52.381 7.12 0.00 0.00 3.07
5631 6008 2.257676 GCAGAGGCAAAGTGCTGC 59.742 61.111 0.00 0.00 44.28 5.25
5831 6208 1.893808 GCATCGTATGGCCCAGTGG 60.894 63.158 0.63 0.63 0.00 4.00
5916 6293 2.902608 TGGTTGTCATGTACTCCCTCT 58.097 47.619 0.00 0.00 0.00 3.69
5925 6302 4.895889 TCATGTACTCCCTCTGTTCCATAG 59.104 45.833 0.00 0.00 0.00 2.23
5986 6363 3.445857 GACACTTACTATGGAACGGAGC 58.554 50.000 0.00 0.00 0.00 4.70
5999 6376 0.452184 ACGGAGCGAGTACATGACAG 59.548 55.000 0.00 0.00 0.00 3.51
6090 6467 4.100653 TGATTCAATTTGTTGCTGGGTTCA 59.899 37.500 0.00 0.00 0.00 3.18
6129 6506 4.332543 TCGCTACAACAAATTCATAGCCTG 59.667 41.667 0.00 0.00 35.83 4.85
6134 6511 4.708421 ACAACAAATTCATAGCCTGCTGAT 59.292 37.500 0.97 0.00 0.00 2.90
6392 6797 1.906824 TCGAGACTTGGCGGGAAGT 60.907 57.895 0.00 0.00 38.94 3.01
6400 6805 3.146847 ACTTGGCGGGAAGTAAAAGAAG 58.853 45.455 0.00 0.00 34.29 2.85
6427 6832 6.143438 CGTGTCGACTAGTTTTCAGTTGTAAT 59.857 38.462 17.92 0.00 0.00 1.89
6430 6835 9.531942 TGTCGACTAGTTTTCAGTTGTAATTAA 57.468 29.630 17.92 0.00 0.00 1.40
6570 6982 9.760077 AATTACCTACTAACATTACTGGAATCG 57.240 33.333 0.00 0.00 0.00 3.34
6571 6983 6.786967 ACCTACTAACATTACTGGAATCGT 57.213 37.500 0.00 0.00 0.00 3.73
6572 6984 7.179076 ACCTACTAACATTACTGGAATCGTT 57.821 36.000 5.96 5.96 0.00 3.85
6573 6985 7.618137 ACCTACTAACATTACTGGAATCGTTT 58.382 34.615 5.98 0.00 0.00 3.60
6574 6986 7.548075 ACCTACTAACATTACTGGAATCGTTTG 59.452 37.037 5.98 6.72 0.00 2.93
6601 7037 1.135402 GCATTTTGACGGGTTAGGCAG 60.135 52.381 0.00 0.00 0.00 4.85
6606 7042 0.981183 TGACGGGTTAGGCAGACATT 59.019 50.000 0.00 0.00 0.00 2.71
6609 7045 2.167900 GACGGGTTAGGCAGACATTACT 59.832 50.000 0.00 0.00 0.00 2.24
6619 7055 2.989166 GCAGACATTACTTTTGCCAAGC 59.011 45.455 0.00 0.00 0.00 4.01
6621 7057 3.983344 CAGACATTACTTTTGCCAAGCAC 59.017 43.478 0.00 0.00 38.71 4.40
6622 7058 3.891366 AGACATTACTTTTGCCAAGCACT 59.109 39.130 0.00 0.00 38.71 4.40
6667 7154 3.510388 TGTTGCATTCGGTTGTTGAAA 57.490 38.095 0.00 0.00 0.00 2.69
6710 7197 8.074370 GCTCGATAATTATTTAGGTGTTTTCCC 58.926 37.037 0.00 0.00 0.00 3.97
6711 7198 8.145316 TCGATAATTATTTAGGTGTTTTCCCG 57.855 34.615 0.00 0.00 0.00 5.14
6724 7211 2.373338 TTTCCCGGTGCCCATGGAAA 62.373 55.000 15.22 15.21 39.88 3.13
6725 7212 2.755469 CCCGGTGCCCATGGAAAG 60.755 66.667 15.22 0.00 0.00 2.62
6727 7214 1.304052 CCGGTGCCCATGGAAAGAA 60.304 57.895 15.22 0.00 0.00 2.52
6728 7215 1.595093 CCGGTGCCCATGGAAAGAAC 61.595 60.000 15.22 0.40 0.00 3.01
6729 7216 0.609131 CGGTGCCCATGGAAAGAACT 60.609 55.000 15.22 0.00 0.00 3.01
6730 7217 1.177401 GGTGCCCATGGAAAGAACTC 58.823 55.000 15.22 0.00 0.00 3.01
6731 7218 1.177401 GTGCCCATGGAAAGAACTCC 58.823 55.000 15.22 0.00 35.88 3.85
6732 7219 0.322456 TGCCCATGGAAAGAACTCCG 60.322 55.000 15.22 0.00 38.44 4.63
6733 7220 1.032114 GCCCATGGAAAGAACTCCGG 61.032 60.000 15.22 0.00 38.44 5.14
6736 7223 2.359900 CCATGGAAAGAACTCCGGAAG 58.640 52.381 5.56 2.09 38.44 3.46
6749 7236 4.773013 ACTCCGGAAGTAACTTTTGTTGA 58.227 39.130 5.23 0.00 43.41 3.18
6751 7238 3.556775 TCCGGAAGTAACTTTTGTTGACG 59.443 43.478 0.00 0.00 43.41 4.35
6816 7316 3.691049 TTTTTCAGCCTTTGTCGAGTG 57.309 42.857 0.00 0.00 0.00 3.51
6817 7317 0.944386 TTTCAGCCTTTGTCGAGTGC 59.056 50.000 0.00 0.00 0.00 4.40
6818 7318 0.884704 TTCAGCCTTTGTCGAGTGCC 60.885 55.000 0.00 0.00 0.00 5.01
6819 7319 1.597854 CAGCCTTTGTCGAGTGCCA 60.598 57.895 0.00 0.00 0.00 4.92
6820 7320 1.302033 AGCCTTTGTCGAGTGCCAG 60.302 57.895 0.00 0.00 0.00 4.85
6821 7321 2.328099 GCCTTTGTCGAGTGCCAGG 61.328 63.158 0.00 0.00 0.00 4.45
6822 7322 2.328099 CCTTTGTCGAGTGCCAGGC 61.328 63.158 3.66 3.66 0.00 4.85
6823 7323 1.597854 CTTTGTCGAGTGCCAGGCA 60.598 57.895 11.22 11.22 35.60 4.75
6824 7324 1.153066 TTTGTCGAGTGCCAGGCAA 60.153 52.632 18.28 0.00 41.47 4.52
6825 7325 1.165907 TTTGTCGAGTGCCAGGCAAG 61.166 55.000 18.28 11.18 41.47 4.01
6826 7326 3.426568 GTCGAGTGCCAGGCAAGC 61.427 66.667 18.28 10.37 41.47 4.01
6843 7343 4.399004 CAAGCCTGCAGATTCTAGTAGT 57.601 45.455 17.39 0.00 0.00 2.73
6844 7344 4.118410 CAAGCCTGCAGATTCTAGTAGTG 58.882 47.826 17.39 0.61 0.00 2.74
6856 7356 4.803098 TCTAGTAGTGAGGGAAGCAAAC 57.197 45.455 0.00 0.00 0.00 2.93
6868 7368 3.143728 GGAAGCAAACGGAGAGGTTAAA 58.856 45.455 0.00 0.00 0.00 1.52
6869 7369 3.566742 GGAAGCAAACGGAGAGGTTAAAA 59.433 43.478 0.00 0.00 0.00 1.52
6870 7370 4.037089 GGAAGCAAACGGAGAGGTTAAAAA 59.963 41.667 0.00 0.00 0.00 1.94
6873 7373 4.583073 AGCAAACGGAGAGGTTAAAAACAT 59.417 37.500 0.00 0.00 0.00 2.71
6874 7374 5.068591 AGCAAACGGAGAGGTTAAAAACATT 59.931 36.000 0.00 0.00 0.00 2.71
6877 7377 7.516155 GCAAACGGAGAGGTTAAAAACATTTTC 60.516 37.037 0.00 0.00 0.00 2.29
6878 7378 6.702716 ACGGAGAGGTTAAAAACATTTTCA 57.297 33.333 0.00 0.00 0.00 2.69
6879 7379 7.284919 ACGGAGAGGTTAAAAACATTTTCAT 57.715 32.000 0.00 0.00 0.00 2.57
6880 7380 7.145323 ACGGAGAGGTTAAAAACATTTTCATG 58.855 34.615 0.00 0.00 36.34 3.07
6881 7381 6.089417 CGGAGAGGTTAAAAACATTTTCATGC 59.911 38.462 0.00 0.00 33.05 4.06
6883 7383 7.116805 GGAGAGGTTAAAAACATTTTCATGCTG 59.883 37.037 0.00 0.00 33.05 4.41
6884 7384 7.725251 AGAGGTTAAAAACATTTTCATGCTGA 58.275 30.769 0.00 0.00 33.05 4.26
6885 7385 7.653311 AGAGGTTAAAAACATTTTCATGCTGAC 59.347 33.333 0.00 0.00 33.05 3.51
6886 7386 6.705825 AGGTTAAAAACATTTTCATGCTGACC 59.294 34.615 0.00 0.00 33.05 4.02
6887 7387 6.705825 GGTTAAAAACATTTTCATGCTGACCT 59.294 34.615 0.00 0.00 33.05 3.85
6888 7388 7.226523 GGTTAAAAACATTTTCATGCTGACCTT 59.773 33.333 0.00 0.00 33.05 3.50
6890 7390 7.628769 AAAAACATTTTCATGCTGACCTTTT 57.371 28.000 0.00 0.00 33.05 2.27
6891 7391 8.729805 AAAAACATTTTCATGCTGACCTTTTA 57.270 26.923 0.00 0.00 33.05 1.52
6892 7392 8.907222 AAAACATTTTCATGCTGACCTTTTAT 57.093 26.923 0.00 0.00 33.05 1.40
6893 7393 8.907222 AAACATTTTCATGCTGACCTTTTATT 57.093 26.923 0.00 0.00 33.05 1.40
6894 7394 8.907222 AACATTTTCATGCTGACCTTTTATTT 57.093 26.923 0.00 0.00 33.05 1.40
6895 7395 8.907222 ACATTTTCATGCTGACCTTTTATTTT 57.093 26.923 0.00 0.00 33.05 1.82
6896 7396 8.992073 ACATTTTCATGCTGACCTTTTATTTTC 58.008 29.630 0.00 0.00 33.05 2.29
6898 7398 8.592105 TTTTCATGCTGACCTTTTATTTTCTG 57.408 30.769 0.00 0.00 0.00 3.02
6899 7399 6.899393 TCATGCTGACCTTTTATTTTCTGT 57.101 33.333 0.00 0.00 0.00 3.41
6901 7401 7.370383 TCATGCTGACCTTTTATTTTCTGTTC 58.630 34.615 0.00 0.00 0.00 3.18
6902 7402 6.959639 TGCTGACCTTTTATTTTCTGTTCT 57.040 33.333 0.00 0.00 0.00 3.01
6903 7403 8.514594 CATGCTGACCTTTTATTTTCTGTTCTA 58.485 33.333 0.00 0.00 0.00 2.10
6904 7404 7.871853 TGCTGACCTTTTATTTTCTGTTCTAC 58.128 34.615 0.00 0.00 0.00 2.59
6905 7405 7.040686 TGCTGACCTTTTATTTTCTGTTCTACC 60.041 37.037 0.00 0.00 0.00 3.18
6906 7406 7.429636 TGACCTTTTATTTTCTGTTCTACCG 57.570 36.000 0.00 0.00 0.00 4.02
6909 7409 7.222161 ACCTTTTATTTTCTGTTCTACCGAGT 58.778 34.615 0.00 0.00 0.00 4.18
6910 7410 7.387122 ACCTTTTATTTTCTGTTCTACCGAGTC 59.613 37.037 0.00 0.00 0.00 3.36
6911 7411 7.148457 CCTTTTATTTTCTGTTCTACCGAGTCC 60.148 40.741 0.00 0.00 0.00 3.85
6912 7412 6.600882 TTATTTTCTGTTCTACCGAGTCCT 57.399 37.500 0.00 0.00 0.00 3.85
6913 7413 4.950205 TTTTCTGTTCTACCGAGTCCTT 57.050 40.909 0.00 0.00 0.00 3.36
6915 7415 4.950205 TTCTGTTCTACCGAGTCCTTTT 57.050 40.909 0.00 0.00 0.00 2.27
6916 7416 4.950205 TCTGTTCTACCGAGTCCTTTTT 57.050 40.909 0.00 0.00 0.00 1.94
6917 7417 4.879598 TCTGTTCTACCGAGTCCTTTTTC 58.120 43.478 0.00 0.00 0.00 2.29
6919 7419 5.011738 TCTGTTCTACCGAGTCCTTTTTCAT 59.988 40.000 0.00 0.00 0.00 2.57
6920 7420 5.617252 TGTTCTACCGAGTCCTTTTTCATT 58.383 37.500 0.00 0.00 0.00 2.57
6921 7421 5.699458 TGTTCTACCGAGTCCTTTTTCATTC 59.301 40.000 0.00 0.00 0.00 2.67
6924 7424 6.292923 TCTACCGAGTCCTTTTTCATTCAAA 58.707 36.000 0.00 0.00 0.00 2.69
6925 7425 6.940298 TCTACCGAGTCCTTTTTCATTCAAAT 59.060 34.615 0.00 0.00 0.00 2.32
6926 7426 5.772521 ACCGAGTCCTTTTTCATTCAAATG 58.227 37.500 0.00 0.00 37.75 2.32
6929 7429 6.088824 CGAGTCCTTTTTCATTCAAATGGAG 58.911 40.000 3.05 0.00 39.45 3.86
6931 7431 7.224522 AGTCCTTTTTCATTCAAATGGAGAG 57.775 36.000 3.05 0.00 39.45 3.20
6932 7432 6.210185 AGTCCTTTTTCATTCAAATGGAGAGG 59.790 38.462 3.05 6.16 39.45 3.69
6952 7691 6.223120 AGAGGTTAAACATTTTCATGCAACC 58.777 36.000 0.00 0.00 38.84 3.77
6953 7692 6.041979 AGAGGTTAAACATTTTCATGCAACCT 59.958 34.615 12.73 12.73 44.93 3.50
6954 7693 7.232534 AGAGGTTAAACATTTTCATGCAACCTA 59.767 33.333 12.80 0.00 43.67 3.08
6955 7694 7.151976 AGGTTAAACATTTTCATGCAACCTAC 58.848 34.615 11.80 0.00 42.78 3.18
6956 7695 7.015195 AGGTTAAACATTTTCATGCAACCTACT 59.985 33.333 11.80 0.00 42.78 2.57
6957 7696 7.328493 GGTTAAACATTTTCATGCAACCTACTC 59.672 37.037 0.00 0.00 37.22 2.59
6958 7697 5.391312 AACATTTTCATGCAACCTACTCC 57.609 39.130 0.00 0.00 33.05 3.85
6959 7698 4.666512 ACATTTTCATGCAACCTACTCCT 58.333 39.130 0.00 0.00 33.05 3.69
6960 7699 5.815581 ACATTTTCATGCAACCTACTCCTA 58.184 37.500 0.00 0.00 33.05 2.94
6961 7700 5.882557 ACATTTTCATGCAACCTACTCCTAG 59.117 40.000 0.00 0.00 33.05 3.02
6962 7701 5.499004 TTTTCATGCAACCTACTCCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
6963 7702 6.614694 TTTTCATGCAACCTACTCCTAGTA 57.385 37.500 0.00 0.00 0.00 1.82
6964 7703 6.614694 TTTCATGCAACCTACTCCTAGTAA 57.385 37.500 0.00 0.00 29.00 2.24
6965 7704 5.854010 TCATGCAACCTACTCCTAGTAAG 57.146 43.478 0.00 0.00 29.00 2.34
6990 7729 1.740296 GTGTCGTGGGATGAACCGG 60.740 63.158 0.00 0.00 40.11 5.28
6994 7733 0.901114 TCGTGGGATGAACCGGAAGA 60.901 55.000 9.46 0.00 40.11 2.87
6997 7736 2.545952 CGTGGGATGAACCGGAAGATAG 60.546 54.545 9.46 0.00 40.11 2.08
6998 7737 2.698797 GTGGGATGAACCGGAAGATAGA 59.301 50.000 9.46 0.00 40.11 1.98
6999 7738 3.325135 GTGGGATGAACCGGAAGATAGAT 59.675 47.826 9.46 0.00 40.11 1.98
7000 7739 3.324846 TGGGATGAACCGGAAGATAGATG 59.675 47.826 9.46 0.00 40.11 2.90
7023 7762 4.911514 TGTGCTAAAACACCTTTTCCTC 57.088 40.909 0.00 0.00 39.93 3.71
7027 7766 6.071051 TGTGCTAAAACACCTTTTCCTCTTTT 60.071 34.615 0.00 0.00 39.93 2.27
7030 7769 6.475727 GCTAAAACACCTTTTCCTCTTTTGAC 59.524 38.462 0.00 0.00 31.74 3.18
7031 7770 4.632538 AACACCTTTTCCTCTTTTGACG 57.367 40.909 0.00 0.00 0.00 4.35
7052 7791 4.218417 ACGCTGACCTTTAATGAATTGCTT 59.782 37.500 0.00 0.00 0.00 3.91
7097 7853 2.675844 TCTTGCGGGTCGATTAATGTTG 59.324 45.455 0.00 0.00 0.00 3.33
7104 7860 4.865925 CGGGTCGATTAATGTTGTCTTACA 59.134 41.667 0.00 0.00 0.00 2.41
7108 7864 7.234384 GGTCGATTAATGTTGTCTTACACAAG 58.766 38.462 0.00 0.00 46.07 3.16
7116 7872 4.569162 TGTTGTCTTACACAAGTTCGGAAG 59.431 41.667 0.00 0.00 46.07 3.46
7136 7892 7.068226 TCGGAAGAAGATACTGTCATATTGACA 59.932 37.037 9.75 9.75 46.28 3.58
7181 7937 9.788960 ATGTTTAGTTTTCTTTCACTTCTCAAC 57.211 29.630 0.00 0.00 0.00 3.18
7192 7948 5.013568 TCACTTCTCAACGAACTTGGTTA 57.986 39.130 0.00 0.00 0.00 2.85
7195 7951 4.141779 ACTTCTCAACGAACTTGGTTACCT 60.142 41.667 2.07 0.00 0.00 3.08
7197 7953 3.385433 TCTCAACGAACTTGGTTACCTCA 59.615 43.478 2.07 0.00 0.00 3.86
7208 7964 6.542821 ACTTGGTTACCTCATGAAGAATGAA 58.457 36.000 2.07 0.00 44.77 2.57
7209 7965 6.656693 ACTTGGTTACCTCATGAAGAATGAAG 59.343 38.462 2.07 0.00 44.77 3.02
7217 7973 8.447924 ACCTCATGAAGAATGAAGTGATTATG 57.552 34.615 0.00 0.00 44.77 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.350633 ACTGTTTTGGTGTTGATGACAATG 58.649 37.500 0.00 0.00 40.65 2.82
8 9 6.405286 CCTTAACTGTTTTGGTGTTGATGACA 60.405 38.462 0.00 0.00 35.42 3.58
19 20 4.664150 TTTCCTGCCTTAACTGTTTTGG 57.336 40.909 0.00 2.83 0.00 3.28
34 35 2.169144 GGGATTGAAAGGGCATTTCCTG 59.831 50.000 20.51 0.00 45.74 3.86
35 36 2.470990 GGGATTGAAAGGGCATTTCCT 58.529 47.619 20.51 9.05 45.74 3.36
36 37 1.486310 GGGGATTGAAAGGGCATTTCC 59.514 52.381 20.51 6.96 45.74 3.13
37 38 1.486310 GGGGGATTGAAAGGGCATTTC 59.514 52.381 17.08 17.08 46.37 2.17
57 58 2.226330 TGTCGTCAACCATCCAAAAGG 58.774 47.619 0.00 0.00 0.00 3.11
65 66 5.957842 ATTGTTGTATTGTCGTCAACCAT 57.042 34.783 0.00 0.00 40.13 3.55
66 67 5.759506 AATTGTTGTATTGTCGTCAACCA 57.240 34.783 0.00 0.00 40.13 3.67
81 82 6.407467 CGTGCACATTTTTGTGTAAATTGTTG 59.593 34.615 18.64 0.00 37.92 3.33
84 85 5.895348 CACGTGCACATTTTTGTGTAAATTG 59.105 36.000 18.64 0.00 41.53 2.32
85 86 5.006165 CCACGTGCACATTTTTGTGTAAATT 59.994 36.000 18.64 0.00 41.53 1.82
90 91 1.203523 ACCACGTGCACATTTTTGTGT 59.796 42.857 18.64 0.30 41.53 3.72
107 108 5.416013 TGTGACAGTCATTTTGTTTGTACCA 59.584 36.000 6.51 0.00 0.00 3.25
109 110 7.985634 ATTGTGACAGTCATTTTGTTTGTAC 57.014 32.000 6.51 0.00 0.00 2.90
111 112 7.903995 AAATTGTGACAGTCATTTTGTTTGT 57.096 28.000 6.51 0.00 0.00 2.83
353 357 9.461312 TCAAATATATATGTTTCATGCCTACCC 57.539 33.333 4.60 0.00 0.00 3.69
497 501 9.791820 CGGTATTCTTCGGGTTTATTTTATTTT 57.208 29.630 0.00 0.00 0.00 1.82
501 505 9.612066 ATTACGGTATTCTTCGGGTTTATTTTA 57.388 29.630 0.00 0.00 0.00 1.52
506 510 7.106439 TGTATTACGGTATTCTTCGGGTTTA 57.894 36.000 0.00 0.00 0.00 2.01
507 511 5.976458 TGTATTACGGTATTCTTCGGGTTT 58.024 37.500 0.00 0.00 0.00 3.27
526 530 5.304686 TCTTGTCTTCCCACTGTTTGTAT 57.695 39.130 0.00 0.00 0.00 2.29
535 539 1.876156 CTGCTGTTCTTGTCTTCCCAC 59.124 52.381 0.00 0.00 0.00 4.61
542 546 3.879892 AGTTTCCTTCTGCTGTTCTTGTC 59.120 43.478 0.00 0.00 0.00 3.18
547 551 2.358898 TGCAAGTTTCCTTCTGCTGTTC 59.641 45.455 0.00 0.00 0.00 3.18
552 556 2.477754 GCAATTGCAAGTTTCCTTCTGC 59.522 45.455 25.36 0.00 41.59 4.26
565 570 0.950836 ACAACGCTGTAGCAATTGCA 59.049 45.000 30.89 14.94 45.16 4.08
570 575 2.603247 CGGCACAACGCTGTAGCAA 61.603 57.895 12.93 0.00 42.55 3.91
579 584 4.953868 TGTCGGTCCGGCACAACG 62.954 66.667 16.16 0.00 36.25 4.10
621 626 2.029844 GCCGCTGCCGATTCCTATC 61.030 63.158 0.00 0.00 36.29 2.08
635 640 3.615099 GAGAGCTATATCTCGCCGC 57.385 57.895 0.00 0.00 36.64 6.53
674 679 5.011023 CAGTTGAAGGGCCTATTGTTTTTCT 59.989 40.000 6.41 0.00 0.00 2.52
686 730 1.949257 CGTTCACAGTTGAAGGGCC 59.051 57.895 0.00 0.00 42.60 5.80
690 734 3.099267 AGGAGACGTTCACAGTTGAAG 57.901 47.619 0.00 0.00 42.60 3.02
691 735 3.382227 TGTAGGAGACGTTCACAGTTGAA 59.618 43.478 0.00 0.00 39.55 2.69
692 736 2.953648 TGTAGGAGACGTTCACAGTTGA 59.046 45.455 0.00 0.00 0.00 3.18
693 737 3.309388 CTGTAGGAGACGTTCACAGTTG 58.691 50.000 0.00 0.00 33.53 3.16
694 738 2.296471 CCTGTAGGAGACGTTCACAGTT 59.704 50.000 12.07 0.00 35.85 3.16
695 739 1.887198 CCTGTAGGAGACGTTCACAGT 59.113 52.381 12.07 0.00 35.85 3.55
696 740 1.402984 GCCTGTAGGAGACGTTCACAG 60.403 57.143 1.17 0.00 37.39 3.66
697 741 0.601558 GCCTGTAGGAGACGTTCACA 59.398 55.000 1.17 0.00 37.39 3.58
698 742 0.108756 GGCCTGTAGGAGACGTTCAC 60.109 60.000 1.17 0.00 37.39 3.18
699 743 1.255667 GGGCCTGTAGGAGACGTTCA 61.256 60.000 0.84 0.00 37.39 3.18
700 744 1.255667 TGGGCCTGTAGGAGACGTTC 61.256 60.000 4.53 0.00 37.39 3.95
701 745 0.617820 ATGGGCCTGTAGGAGACGTT 60.618 55.000 4.53 0.00 37.39 3.99
702 746 0.617820 AATGGGCCTGTAGGAGACGT 60.618 55.000 4.53 0.00 37.39 4.34
703 747 0.541863 AAATGGGCCTGTAGGAGACG 59.458 55.000 4.53 0.00 37.39 4.18
704 748 1.559682 TCAAATGGGCCTGTAGGAGAC 59.440 52.381 4.53 0.00 37.39 3.36
705 749 1.965414 TCAAATGGGCCTGTAGGAGA 58.035 50.000 4.53 0.00 37.39 3.71
706 750 2.239654 TCTTCAAATGGGCCTGTAGGAG 59.760 50.000 4.53 0.00 37.39 3.69
707 751 2.239654 CTCTTCAAATGGGCCTGTAGGA 59.760 50.000 4.53 0.00 37.39 2.94
708 752 2.648059 CTCTTCAAATGGGCCTGTAGG 58.352 52.381 4.53 0.00 38.53 3.18
709 753 2.019984 GCTCTTCAAATGGGCCTGTAG 58.980 52.381 4.53 0.00 0.00 2.74
710 754 1.340991 GGCTCTTCAAATGGGCCTGTA 60.341 52.381 4.53 0.00 39.68 2.74
711 755 0.613012 GGCTCTTCAAATGGGCCTGT 60.613 55.000 4.53 0.00 39.68 4.00
712 756 1.325476 GGGCTCTTCAAATGGGCCTG 61.325 60.000 4.53 0.00 42.14 4.85
713 757 1.000866 GGGCTCTTCAAATGGGCCT 59.999 57.895 4.53 0.00 42.14 5.19
714 758 2.060383 GGGGCTCTTCAAATGGGCC 61.060 63.158 0.00 0.00 42.60 5.80
715 759 0.615827 AAGGGGCTCTTCAAATGGGC 60.616 55.000 0.00 0.00 0.00 5.36
716 760 3.697799 AAGGGGCTCTTCAAATGGG 57.302 52.632 0.00 0.00 0.00 4.00
724 768 1.563410 CTGATCCAAGAAGGGGCTCTT 59.437 52.381 0.00 0.00 38.65 2.85
741 785 0.687354 GCCCAGTGAGGAGTTTCTGA 59.313 55.000 0.00 0.00 41.22 3.27
766 810 3.936585 TTTTTGAGTTGCCTGCGTC 57.063 47.368 0.00 0.00 0.00 5.19
788 832 2.755103 CTCGGCTATCCTTTGCCTTTTT 59.245 45.455 0.00 0.00 46.42 1.94
789 833 2.290960 ACTCGGCTATCCTTTGCCTTTT 60.291 45.455 0.00 0.00 46.42 2.27
790 834 1.282157 ACTCGGCTATCCTTTGCCTTT 59.718 47.619 0.00 0.00 46.42 3.11
791 835 0.912486 ACTCGGCTATCCTTTGCCTT 59.088 50.000 0.00 0.00 46.42 4.35
792 836 0.179000 CACTCGGCTATCCTTTGCCT 59.821 55.000 0.00 0.00 46.42 4.75
793 837 0.815615 CCACTCGGCTATCCTTTGCC 60.816 60.000 0.00 0.00 45.25 4.52
794 838 0.178068 TCCACTCGGCTATCCTTTGC 59.822 55.000 0.00 0.00 0.00 3.68
795 839 2.103094 TCATCCACTCGGCTATCCTTTG 59.897 50.000 0.00 0.00 0.00 2.77
796 840 2.366916 CTCATCCACTCGGCTATCCTTT 59.633 50.000 0.00 0.00 0.00 3.11
801 845 0.965439 GCTCTCATCCACTCGGCTAT 59.035 55.000 0.00 0.00 0.00 2.97
1211 1311 3.862991 GAGGGTTAGGCGGAGGGC 61.863 72.222 0.00 0.00 42.51 5.19
1340 1449 3.402681 CAGTCAGGGTCGGGGCAT 61.403 66.667 0.00 0.00 0.00 4.40
1353 1462 2.730090 CGCAATCCACAGCAAATCAGTC 60.730 50.000 0.00 0.00 0.00 3.51
1360 1471 1.068402 CAATGTCGCAATCCACAGCAA 60.068 47.619 0.00 0.00 0.00 3.91
1420 1570 0.320421 GCACTCGACTACAAGCCCAA 60.320 55.000 0.00 0.00 0.00 4.12
1428 1578 1.419374 CAACACCAGCACTCGACTAC 58.581 55.000 0.00 0.00 0.00 2.73
1486 1643 5.478407 ACATTCCATTCCATTCCGTTTTTC 58.522 37.500 0.00 0.00 0.00 2.29
1487 1644 5.011533 TGACATTCCATTCCATTCCGTTTTT 59.988 36.000 0.00 0.00 0.00 1.94
1514 1672 6.035112 GGTCGAGAAGTCAGATACAAAATCAC 59.965 42.308 0.00 0.00 0.00 3.06
1530 1688 4.564372 CGATATAATGCCATGGTCGAGAAG 59.436 45.833 14.67 0.00 0.00 2.85
1564 1722 8.095792 TGTAATAATCTTCGTTGTGTAGGGAAA 58.904 33.333 0.00 0.00 0.00 3.13
1589 1747 4.435693 CACGAAACATCGCAAAAATGTTG 58.564 39.130 2.53 0.00 44.44 3.33
1665 1870 5.080969 AGAAAGCCAATTGAATGGTCATG 57.919 39.130 7.12 0.00 42.75 3.07
1667 1872 5.183713 CACTAGAAAGCCAATTGAATGGTCA 59.816 40.000 7.12 0.00 42.75 4.02
1689 1894 5.238583 AGTAATACACAGAGCAAAGACCAC 58.761 41.667 0.00 0.00 0.00 4.16
1700 1938 3.257375 ACGGCAACAGAGTAATACACAGA 59.743 43.478 0.00 0.00 0.00 3.41
1720 1958 4.315803 ACAGGGAATTTCTGAAGTACACG 58.684 43.478 14.18 0.00 36.22 4.49
1726 1964 9.717942 CTTCCTATATACAGGGAATTTCTGAAG 57.282 37.037 14.18 0.00 38.29 3.02
1782 2020 8.860088 ACAGGAAAATAAGAACTAGCAAACATT 58.140 29.630 0.00 0.00 0.00 2.71
1808 2046 3.513680 CTGCAAATATTTCAGGCAGCA 57.486 42.857 19.91 14.20 44.45 4.41
1860 2098 8.684386 TGAAAATTCCACACTAACATGTCTTA 57.316 30.769 0.00 0.00 0.00 2.10
2020 2259 7.715249 ACATCACCGAATTTACATGTAAGCTAT 59.285 33.333 17.36 6.89 0.00 2.97
2087 2326 4.331968 TGTAGATGCCGAAAACCTCAAAT 58.668 39.130 0.00 0.00 0.00 2.32
2094 2333 5.266242 CAAATAGCTGTAGATGCCGAAAAC 58.734 41.667 0.00 0.00 0.00 2.43
2178 2417 5.220681 GCACACTCTAAAGCACTTTATAGGC 60.221 44.000 15.73 8.80 35.10 3.93
2220 2459 1.270550 GGGTGTTCCTGCAAGAATGTG 59.729 52.381 0.13 0.00 34.07 3.21
2475 2714 3.131400 TCCCAAAACGCTAAAAGCAAAGT 59.869 39.130 0.00 0.00 42.58 2.66
2582 2821 7.121168 CCAGCATACAAACAATATATACCCCTG 59.879 40.741 0.00 0.00 0.00 4.45
2599 2838 1.338674 CCGAACAGGAACCAGCATACA 60.339 52.381 0.00 0.00 45.00 2.29
2628 2867 2.258109 GGAAGGTCCTGTACAACCTCT 58.742 52.381 17.65 9.51 45.21 3.69
2643 2882 4.278170 TGAGCTACATTTTGTTGTGGAAGG 59.722 41.667 0.00 0.00 30.27 3.46
2822 3061 9.626045 GTCCCAAAATAAGTGTCTTTGATTTAG 57.374 33.333 0.00 0.00 32.87 1.85
2823 3062 8.293867 CGTCCCAAAATAAGTGTCTTTGATTTA 58.706 33.333 0.00 0.00 32.87 1.40
2824 3063 7.145323 CGTCCCAAAATAAGTGTCTTTGATTT 58.855 34.615 0.00 0.00 32.87 2.17
2825 3064 6.294508 CCGTCCCAAAATAAGTGTCTTTGATT 60.295 38.462 0.00 0.00 32.87 2.57
2826 3065 5.183140 CCGTCCCAAAATAAGTGTCTTTGAT 59.817 40.000 0.00 0.00 32.87 2.57
2827 3066 4.517453 CCGTCCCAAAATAAGTGTCTTTGA 59.483 41.667 0.00 0.00 32.87 2.69
2828 3067 4.517453 TCCGTCCCAAAATAAGTGTCTTTG 59.483 41.667 0.00 0.00 0.00 2.77
2829 3068 4.721132 TCCGTCCCAAAATAAGTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
2830 3069 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2865 3104 4.053295 CAAGAGGAAGGCAACACAAAATG 58.947 43.478 0.00 0.00 41.41 2.32
3083 3324 7.047891 CAGTCTACAGGCCAAACTATATCAAA 58.952 38.462 5.01 0.00 0.00 2.69
3092 3333 1.604604 TTGCAGTCTACAGGCCAAAC 58.395 50.000 5.01 0.00 0.00 2.93
3111 3352 4.895297 AGAAAAATATCCGGTGCCATGATT 59.105 37.500 0.00 0.00 0.00 2.57
3123 3364 6.349300 TGTCACTCCTAGCAGAAAAATATCC 58.651 40.000 0.00 0.00 0.00 2.59
3129 3370 8.349983 GTTTAAAATGTCACTCCTAGCAGAAAA 58.650 33.333 0.00 0.00 0.00 2.29
3162 3403 8.702438 AGATAAAACAACGCAATCAAATTTCAG 58.298 29.630 0.00 0.00 0.00 3.02
3181 3422 5.105146 ACACCAAACAGGCAAACAGATAAAA 60.105 36.000 0.00 0.00 43.14 1.52
3183 3424 3.957497 ACACCAAACAGGCAAACAGATAA 59.043 39.130 0.00 0.00 43.14 1.75
3278 3644 3.007614 AGTGGGCTTTGTAGTGAATACGT 59.992 43.478 0.00 0.00 37.17 3.57
3289 3655 6.015434 CCTTGATAAGTTTTAGTGGGCTTTGT 60.015 38.462 0.00 0.00 0.00 2.83
3319 3685 6.790461 TCCTACAGCCTATATATTTGGGTTGA 59.210 38.462 16.46 3.21 34.81 3.18
3320 3686 6.879458 GTCCTACAGCCTATATATTTGGGTTG 59.121 42.308 9.97 9.97 36.40 3.77
3322 3688 5.487845 GGTCCTACAGCCTATATATTTGGGT 59.512 44.000 0.00 0.00 0.00 4.51
3325 3691 6.213600 ACCAGGTCCTACAGCCTATATATTTG 59.786 42.308 0.00 0.00 33.07 2.32
3326 3692 6.331846 ACCAGGTCCTACAGCCTATATATTT 58.668 40.000 0.00 0.00 33.07 1.40
3426 3792 2.840651 TGGATGGGAGGAAAGAAGAGTC 59.159 50.000 0.00 0.00 0.00 3.36
3428 3794 4.516652 ATTGGATGGGAGGAAAGAAGAG 57.483 45.455 0.00 0.00 0.00 2.85
3451 3817 2.996249 CAGCCTTTCTGGATGCTAGA 57.004 50.000 0.00 0.00 45.90 2.43
3482 3848 3.740832 GCCAAACAGGATAGCAAAACAAC 59.259 43.478 0.00 0.00 41.22 3.32
3488 3854 2.530460 ATGGCCAAACAGGATAGCAA 57.470 45.000 10.96 0.00 41.22 3.91
3499 3865 4.653868 AGCAAATCAAATGAATGGCCAAA 58.346 34.783 10.96 0.00 0.00 3.28
3525 3891 9.923143 GCAAAAACATACTTAAGGACCTAAAAT 57.077 29.630 7.53 0.00 0.00 1.82
3611 3977 8.798402 AGGTACTAGTCATTAATCTCAGCATAC 58.202 37.037 0.00 0.00 36.02 2.39
3666 4034 0.103572 TAGATGGGGTTCGTTAGCGC 59.896 55.000 0.00 0.00 38.14 5.92
3698 4068 6.617879 GTTTTACAAATTAATCGGGAGCAGT 58.382 36.000 0.00 0.00 0.00 4.40
3711 4081 4.157840 GCCTGGAGGATCGTTTTACAAATT 59.842 41.667 0.00 0.00 37.39 1.82
3743 4113 1.267806 ACAGCAATGCGGAGAAGTTTG 59.732 47.619 13.08 0.00 0.00 2.93
3755 4125 5.124457 ACAAAGGACATAAGCTACAGCAATG 59.876 40.000 3.70 9.09 45.16 2.82
3994 4364 4.649088 AATTTAACTAAGGGAATGGCGC 57.351 40.909 0.00 0.00 0.00 6.53
4004 4374 9.628500 AACCCCTGAAGCTATAATTTAACTAAG 57.372 33.333 0.00 0.00 0.00 2.18
4107 4483 1.504359 TCAAGCAAGCAAGCAAATGC 58.496 45.000 0.00 0.00 46.78 3.56
4248 4624 2.041755 AGGAACCATTTTCTCTGGGGAC 59.958 50.000 0.00 0.00 38.14 4.46
4336 4713 6.703607 ACGATTAGCAGAGACTAAATGGAATG 59.296 38.462 0.00 0.00 35.82 2.67
4346 4723 6.518208 ACTTAGAAACGATTAGCAGAGACT 57.482 37.500 0.00 0.00 0.00 3.24
4347 4724 8.684973 TTAACTTAGAAACGATTAGCAGAGAC 57.315 34.615 0.00 0.00 0.00 3.36
4456 4833 8.237267 CCAACTCCTCAAAGTATTATGTTTGAC 58.763 37.037 0.00 0.00 37.67 3.18
4484 4861 5.380043 CCCTTGCCACTCTTGTATCATAAT 58.620 41.667 0.00 0.00 0.00 1.28
4592 4969 6.934083 CCATAAGGAGAGCTCTAATTTCTTCC 59.066 42.308 18.25 11.26 36.89 3.46
4659 5036 0.927537 TGCAGTTCTTTCACGTGACG 59.072 50.000 19.90 12.67 0.00 4.35
4697 5074 7.278868 AGCTAGACAATACTGTAAACTTGCATC 59.721 37.037 0.00 4.15 35.30 3.91
4710 5087 3.370104 ACCAGCTCAGCTAGACAATACT 58.630 45.455 0.00 0.00 36.40 2.12
4798 5175 3.132646 AGATGCTACTTCCAGCTCTTCAG 59.867 47.826 0.00 0.00 42.30 3.02
5025 5402 2.961526 AATGGTTAGTCTCGCGTGAT 57.038 45.000 14.59 6.29 0.00 3.06
5029 5406 7.085116 AGAGATTAATAATGGTTAGTCTCGCG 58.915 38.462 0.00 0.00 45.04 5.87
5045 5422 1.490490 TGCCTGGCCGAAGAGATTAAT 59.510 47.619 17.53 0.00 0.00 1.40
5221 5598 0.108138 GAACCACGGTAGCTGCTGAT 60.108 55.000 18.32 0.00 0.00 2.90
5450 5827 0.254178 TCAATTGGAGGAGGAGCAGC 59.746 55.000 5.42 0.00 0.00 5.25
5631 6008 1.000171 GTTGAAAGGGCTTGAGCAAGG 60.000 52.381 11.78 0.00 44.36 3.61
5746 6123 1.837538 GAAGCAACAGCGCACCGTAA 61.838 55.000 11.47 0.00 0.00 3.18
5831 6208 6.183360 CCTCTCAGGTTGTCTCTTGATAGTAC 60.183 46.154 0.00 0.00 0.00 2.73
5925 6302 8.791355 AATTTGAATAAAACCACGACACTTAC 57.209 30.769 0.00 0.00 0.00 2.34
5986 6363 2.413112 CAGTTTGGCTGTCATGTACTCG 59.587 50.000 0.00 0.00 40.27 4.18
5999 6376 5.518847 GGTTTTAGTTTGTCTTCAGTTTGGC 59.481 40.000 0.00 0.00 0.00 4.52
6090 6467 7.979537 TGTTGTAGCGACAGAATAGAATTATGT 59.020 33.333 0.00 0.00 36.76 2.29
6129 6506 7.255625 TACTCCATAGTCAACATGAGTATCAGC 60.256 40.741 0.00 0.00 42.71 4.26
6134 6511 7.710907 GCAAATACTCCATAGTCAACATGAGTA 59.289 37.037 0.00 0.00 36.79 2.59
6434 6839 9.742144 TGGAGCCAAAATTTAGTACAGTAATAA 57.258 29.630 0.00 0.00 0.00 1.40
6574 6986 0.109597 CCCGTCAAAATGCACTCAGC 60.110 55.000 0.00 0.00 45.96 4.26
6587 7023 0.981183 AATGTCTGCCTAACCCGTCA 59.019 50.000 0.00 0.00 0.00 4.35
6588 7024 2.167900 AGTAATGTCTGCCTAACCCGTC 59.832 50.000 0.00 0.00 0.00 4.79
6590 7026 2.981859 AGTAATGTCTGCCTAACCCG 57.018 50.000 0.00 0.00 0.00 5.28
6601 7037 4.243007 AGTGCTTGGCAAAAGTAATGTC 57.757 40.909 0.00 0.00 41.47 3.06
6645 7132 3.510388 TCAACAACCGAATGCAACAAA 57.490 38.095 0.00 0.00 0.00 2.83
6648 7135 3.614616 TGTTTTCAACAACCGAATGCAAC 59.385 39.130 0.00 0.00 38.72 4.17
6649 7136 3.849911 TGTTTTCAACAACCGAATGCAA 58.150 36.364 0.00 0.00 38.72 4.08
6650 7137 3.510388 TGTTTTCAACAACCGAATGCA 57.490 38.095 0.00 0.00 38.72 3.96
6674 7161 9.433317 CTAAATAATTATCGAGCGCAAAAGAAA 57.567 29.630 11.47 0.00 0.00 2.52
6677 7164 7.321271 CACCTAAATAATTATCGAGCGCAAAAG 59.679 37.037 11.47 0.00 0.00 2.27
6680 7167 5.756347 ACACCTAAATAATTATCGAGCGCAA 59.244 36.000 11.47 0.00 0.00 4.85
6681 7168 5.294356 ACACCTAAATAATTATCGAGCGCA 58.706 37.500 11.47 0.00 0.00 6.09
6682 7169 5.840940 ACACCTAAATAATTATCGAGCGC 57.159 39.130 0.00 0.00 0.00 5.92
6684 7171 8.074370 GGGAAAACACCTAAATAATTATCGAGC 58.926 37.037 0.00 0.00 0.00 5.03
6686 7173 7.227116 CCGGGAAAACACCTAAATAATTATCGA 59.773 37.037 0.00 0.00 0.00 3.59
6687 7174 7.012610 ACCGGGAAAACACCTAAATAATTATCG 59.987 37.037 6.32 0.00 0.00 2.92
6688 7175 8.132995 CACCGGGAAAACACCTAAATAATTATC 58.867 37.037 6.32 0.00 0.00 1.75
6690 7177 6.127675 GCACCGGGAAAACACCTAAATAATTA 60.128 38.462 6.32 0.00 0.00 1.40
6711 7198 2.228411 GGAGTTCTTTCCATGGGCACC 61.228 57.143 13.02 1.28 42.97 5.01
6724 7211 5.032327 ACAAAAGTTACTTCCGGAGTTCT 57.968 39.130 3.34 5.19 39.86 3.01
6725 7212 5.295045 TCAACAAAAGTTACTTCCGGAGTTC 59.705 40.000 3.34 3.09 39.86 3.01
6727 7214 4.573607 GTCAACAAAAGTTACTTCCGGAGT 59.426 41.667 3.34 8.03 42.55 3.85
6728 7215 4.318546 CGTCAACAAAAGTTACTTCCGGAG 60.319 45.833 3.34 1.34 0.00 4.63
6729 7216 3.556775 CGTCAACAAAAGTTACTTCCGGA 59.443 43.478 0.00 0.00 0.00 5.14
6730 7217 3.303526 CCGTCAACAAAAGTTACTTCCGG 60.304 47.826 0.00 0.00 0.00 5.14
6731 7218 3.847105 GCCGTCAACAAAAGTTACTTCCG 60.847 47.826 0.00 0.00 0.00 4.30
6732 7219 3.314357 AGCCGTCAACAAAAGTTACTTCC 59.686 43.478 0.00 0.00 0.00 3.46
6733 7220 4.279659 CAGCCGTCAACAAAAGTTACTTC 58.720 43.478 0.00 0.00 0.00 3.01
6736 7223 2.381589 GCAGCCGTCAACAAAAGTTAC 58.618 47.619 0.00 0.00 0.00 2.50
6807 7307 1.597854 CTTGCCTGGCACTCGACAA 60.598 57.895 23.30 3.52 38.71 3.18
6808 7308 2.031012 CTTGCCTGGCACTCGACA 59.969 61.111 23.30 4.35 38.71 4.35
6810 7310 4.704833 GGCTTGCCTGGCACTCGA 62.705 66.667 23.30 5.64 38.71 4.04
6811 7311 4.711949 AGGCTTGCCTGGCACTCG 62.712 66.667 23.30 13.81 38.71 4.18
6812 7312 3.060615 CAGGCTTGCCTGGCACTC 61.061 66.667 28.58 15.49 38.71 3.51
6822 7322 4.118410 CACTACTAGAATCTGCAGGCTTG 58.882 47.826 15.13 12.03 0.00 4.01
6823 7323 4.026744 TCACTACTAGAATCTGCAGGCTT 58.973 43.478 15.13 8.05 0.00 4.35
6824 7324 3.636300 CTCACTACTAGAATCTGCAGGCT 59.364 47.826 15.13 11.49 0.00 4.58
6825 7325 3.243704 CCTCACTACTAGAATCTGCAGGC 60.244 52.174 15.13 3.89 0.00 4.85
6826 7326 3.320541 CCCTCACTACTAGAATCTGCAGG 59.679 52.174 15.13 0.00 0.00 4.85
6831 7331 4.873010 TGCTTCCCTCACTACTAGAATCT 58.127 43.478 0.00 0.00 0.00 2.40
6832 7332 5.599999 TTGCTTCCCTCACTACTAGAATC 57.400 43.478 0.00 0.00 0.00 2.52
6843 7343 0.321671 CTCTCCGTTTGCTTCCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
6844 7344 0.391793 CCTCTCCGTTTGCTTCCCTC 60.392 60.000 0.00 0.00 0.00 4.30
6856 7356 6.089417 GCATGAAAATGTTTTTAACCTCTCCG 59.911 38.462 0.00 0.00 0.00 4.63
6877 7377 7.373493 AGAACAGAAAATAAAAGGTCAGCATG 58.627 34.615 0.00 0.00 37.54 4.06
6878 7378 7.530426 AGAACAGAAAATAAAAGGTCAGCAT 57.470 32.000 0.00 0.00 0.00 3.79
6879 7379 6.959639 AGAACAGAAAATAAAAGGTCAGCA 57.040 33.333 0.00 0.00 0.00 4.41
6880 7380 7.306213 GGTAGAACAGAAAATAAAAGGTCAGC 58.694 38.462 0.00 0.00 0.00 4.26
6881 7381 7.386848 TCGGTAGAACAGAAAATAAAAGGTCAG 59.613 37.037 0.00 0.00 0.00 3.51
6883 7383 7.387122 ACTCGGTAGAACAGAAAATAAAAGGTC 59.613 37.037 0.00 0.00 0.00 3.85
6884 7384 7.222161 ACTCGGTAGAACAGAAAATAAAAGGT 58.778 34.615 0.00 0.00 0.00 3.50
6885 7385 7.148457 GGACTCGGTAGAACAGAAAATAAAAGG 60.148 40.741 0.00 0.00 0.00 3.11
6886 7386 7.603024 AGGACTCGGTAGAACAGAAAATAAAAG 59.397 37.037 0.00 0.00 0.00 2.27
6887 7387 7.447594 AGGACTCGGTAGAACAGAAAATAAAA 58.552 34.615 0.00 0.00 0.00 1.52
6888 7388 7.001099 AGGACTCGGTAGAACAGAAAATAAA 57.999 36.000 0.00 0.00 0.00 1.40
6890 7390 6.600882 AAGGACTCGGTAGAACAGAAAATA 57.399 37.500 0.00 0.00 0.00 1.40
6891 7391 5.485209 AAGGACTCGGTAGAACAGAAAAT 57.515 39.130 0.00 0.00 0.00 1.82
6892 7392 4.950205 AAGGACTCGGTAGAACAGAAAA 57.050 40.909 0.00 0.00 0.00 2.29
6893 7393 4.950205 AAAGGACTCGGTAGAACAGAAA 57.050 40.909 0.00 0.00 0.00 2.52
6894 7394 4.950205 AAAAGGACTCGGTAGAACAGAA 57.050 40.909 0.00 0.00 0.00 3.02
6895 7395 4.342951 TGAAAAAGGACTCGGTAGAACAGA 59.657 41.667 0.00 0.00 0.00 3.41
6896 7396 4.628074 TGAAAAAGGACTCGGTAGAACAG 58.372 43.478 0.00 0.00 0.00 3.16
6898 7398 5.699458 TGAATGAAAAAGGACTCGGTAGAAC 59.301 40.000 0.00 0.00 0.00 3.01
6899 7399 5.860611 TGAATGAAAAAGGACTCGGTAGAA 58.139 37.500 0.00 0.00 0.00 2.10
6901 7401 6.554334 TTTGAATGAAAAAGGACTCGGTAG 57.446 37.500 0.00 0.00 0.00 3.18
6902 7402 6.072175 CCATTTGAATGAAAAAGGACTCGGTA 60.072 38.462 5.32 0.00 38.70 4.02
6903 7403 5.278957 CCATTTGAATGAAAAAGGACTCGGT 60.279 40.000 5.32 0.00 38.70 4.69
6904 7404 5.048083 TCCATTTGAATGAAAAAGGACTCGG 60.048 40.000 5.32 0.00 38.70 4.63
6905 7405 6.012658 TCCATTTGAATGAAAAAGGACTCG 57.987 37.500 5.32 0.00 38.70 4.18
6906 7406 7.219484 TCTCCATTTGAATGAAAAAGGACTC 57.781 36.000 5.32 0.00 38.70 3.36
6909 7409 6.077322 ACCTCTCCATTTGAATGAAAAAGGA 58.923 36.000 5.32 0.00 38.70 3.36
6910 7410 6.350629 ACCTCTCCATTTGAATGAAAAAGG 57.649 37.500 5.32 8.42 38.70 3.11
6911 7411 9.762933 TTTAACCTCTCCATTTGAATGAAAAAG 57.237 29.630 5.32 0.00 38.70 2.27
6912 7412 9.541143 GTTTAACCTCTCCATTTGAATGAAAAA 57.459 29.630 5.32 0.00 38.70 1.94
6913 7413 8.700051 TGTTTAACCTCTCCATTTGAATGAAAA 58.300 29.630 5.32 0.00 38.70 2.29
6915 7415 7.831691 TGTTTAACCTCTCCATTTGAATGAA 57.168 32.000 5.32 0.00 38.70 2.57
6916 7416 8.421249 AATGTTTAACCTCTCCATTTGAATGA 57.579 30.769 5.32 0.00 38.70 2.57
6917 7417 9.492973 AAAATGTTTAACCTCTCCATTTGAATG 57.507 29.630 0.00 0.00 36.25 2.67
6919 7419 8.700051 TGAAAATGTTTAACCTCTCCATTTGAA 58.300 29.630 0.00 0.00 36.25 2.69
6920 7420 8.243961 TGAAAATGTTTAACCTCTCCATTTGA 57.756 30.769 0.00 0.00 36.25 2.69
6921 7421 8.928733 CATGAAAATGTTTAACCTCTCCATTTG 58.071 33.333 0.00 0.00 36.25 2.32
6924 7424 6.211184 TGCATGAAAATGTTTAACCTCTCCAT 59.789 34.615 0.00 0.00 0.00 3.41
6925 7425 5.538053 TGCATGAAAATGTTTAACCTCTCCA 59.462 36.000 0.00 0.00 0.00 3.86
6926 7426 6.024552 TGCATGAAAATGTTTAACCTCTCC 57.975 37.500 0.00 0.00 0.00 3.71
6929 7429 6.223120 AGGTTGCATGAAAATGTTTAACCTC 58.777 36.000 0.00 0.00 37.64 3.85
6931 7431 7.151976 AGTAGGTTGCATGAAAATGTTTAACC 58.848 34.615 0.00 0.00 34.98 2.85
6932 7432 7.328493 GGAGTAGGTTGCATGAAAATGTTTAAC 59.672 37.037 0.00 0.00 0.00 2.01
6952 7691 6.476380 CGACACTCACTACTTACTAGGAGTAG 59.524 46.154 23.44 23.44 44.04 2.57
6953 7692 6.071108 ACGACACTCACTACTTACTAGGAGTA 60.071 42.308 7.69 7.69 44.04 2.59
6954 7693 5.177326 CGACACTCACTACTTACTAGGAGT 58.823 45.833 6.33 6.33 46.95 3.85
6955 7694 5.063691 CACGACACTCACTACTTACTAGGAG 59.936 48.000 0.00 0.00 38.41 3.69
6956 7695 4.934001 CACGACACTCACTACTTACTAGGA 59.066 45.833 0.00 0.00 0.00 2.94
6957 7696 4.094590 CCACGACACTCACTACTTACTAGG 59.905 50.000 0.00 0.00 0.00 3.02
6958 7697 4.094590 CCCACGACACTCACTACTTACTAG 59.905 50.000 0.00 0.00 0.00 2.57
6959 7698 4.005650 CCCACGACACTCACTACTTACTA 58.994 47.826 0.00 0.00 0.00 1.82
6960 7699 2.818432 CCCACGACACTCACTACTTACT 59.182 50.000 0.00 0.00 0.00 2.24
6961 7700 2.816087 TCCCACGACACTCACTACTTAC 59.184 50.000 0.00 0.00 0.00 2.34
6962 7701 3.144657 TCCCACGACACTCACTACTTA 57.855 47.619 0.00 0.00 0.00 2.24
6963 7702 1.991121 TCCCACGACACTCACTACTT 58.009 50.000 0.00 0.00 0.00 2.24
6964 7703 1.819288 CATCCCACGACACTCACTACT 59.181 52.381 0.00 0.00 0.00 2.57
6965 7704 1.816835 TCATCCCACGACACTCACTAC 59.183 52.381 0.00 0.00 0.00 2.73
6990 7729 7.497249 AGGTGTTTTAGCACATCATCTATCTTC 59.503 37.037 0.00 0.00 40.89 2.87
6994 7733 7.944729 AAAGGTGTTTTAGCACATCATCTAT 57.055 32.000 0.00 0.00 40.89 1.98
6997 7736 5.863935 GGAAAAGGTGTTTTAGCACATCATC 59.136 40.000 0.00 0.00 40.89 2.92
6998 7737 5.539955 AGGAAAAGGTGTTTTAGCACATCAT 59.460 36.000 0.00 0.00 40.89 2.45
6999 7738 4.892934 AGGAAAAGGTGTTTTAGCACATCA 59.107 37.500 0.00 0.00 40.89 3.07
7000 7739 5.241728 AGAGGAAAAGGTGTTTTAGCACATC 59.758 40.000 0.00 0.00 40.89 3.06
7023 7762 5.356882 TCATTAAAGGTCAGCGTCAAAAG 57.643 39.130 0.00 0.00 0.00 2.27
7027 7766 4.379394 GCAATTCATTAAAGGTCAGCGTCA 60.379 41.667 0.00 0.00 0.00 4.35
7030 7769 4.361451 AGCAATTCATTAAAGGTCAGCG 57.639 40.909 0.00 0.00 0.00 5.18
7031 7770 5.958955 AGAAGCAATTCATTAAAGGTCAGC 58.041 37.500 0.00 0.00 0.00 4.26
7097 7853 5.287226 TCTTCTTCCGAACTTGTGTAAGAC 58.713 41.667 0.00 0.00 37.36 3.01
7104 7860 5.010719 TGACAGTATCTTCTTCCGAACTTGT 59.989 40.000 0.00 0.00 0.00 3.16
7108 7864 7.921214 TCAATATGACAGTATCTTCTTCCGAAC 59.079 37.037 0.00 0.00 0.00 3.95
7176 7932 3.724374 TGAGGTAACCAAGTTCGTTGAG 58.276 45.455 0.00 0.00 38.60 3.02
7181 7937 4.566004 TCTTCATGAGGTAACCAAGTTCG 58.434 43.478 4.57 0.00 37.17 3.95
7195 7951 6.263842 GGGCATAATCACTTCATTCTTCATGA 59.736 38.462 0.00 0.00 40.43 3.07
7197 7953 5.240183 CGGGCATAATCACTTCATTCTTCAT 59.760 40.000 0.00 0.00 0.00 2.57
7208 7964 4.585879 ACTAAAACACGGGCATAATCACT 58.414 39.130 0.00 0.00 0.00 3.41
7209 7965 4.957759 ACTAAAACACGGGCATAATCAC 57.042 40.909 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.