Multiple sequence alignment - TraesCS5B01G516900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G516900 chr5B 100.000 2690 0 0 1 2690 680673487 680670798 0.000000e+00 4968.0
1 TraesCS5B01G516900 chr5B 84.909 656 90 6 1107 1754 680665744 680665090 0.000000e+00 654.0
2 TraesCS5B01G516900 chr5D 88.414 2201 156 46 548 2690 539052711 539050552 0.000000e+00 2560.0
3 TraesCS5B01G516900 chr5D 82.331 798 119 15 1107 1882 539049322 539048525 0.000000e+00 673.0
4 TraesCS5B01G516900 chr5D 91.080 213 18 1 1 213 57581635 57581424 1.220000e-73 287.0
5 TraesCS5B01G516900 chr5D 90.640 203 16 2 1 202 543533905 543534105 1.590000e-67 267.0
6 TraesCS5B01G516900 chr4A 88.054 1691 129 39 504 2145 629455908 629457574 0.000000e+00 1936.0
7 TraesCS5B01G516900 chr4A 86.348 586 77 1 1107 1692 629460815 629461397 1.050000e-178 636.0
8 TraesCS5B01G516900 chr4A 87.324 213 21 2 2484 2690 629458156 629458368 3.460000e-59 239.0
9 TraesCS5B01G516900 chr4A 83.234 167 22 3 2236 2397 629457814 629457979 6.000000e-32 148.0
10 TraesCS5B01G516900 chr6D 91.860 430 20 5 1392 1817 430454749 430455167 1.070000e-163 586.0
11 TraesCS5B01G516900 chr6D 84.532 278 30 7 1 273 221207339 221207608 2.050000e-66 263.0
12 TraesCS5B01G516900 chr7D 81.504 665 92 19 1138 1787 535902935 535902287 3.970000e-143 518.0
13 TraesCS5B01G516900 chr7D 91.469 211 17 1 1 210 30967641 30967851 3.390000e-74 289.0
14 TraesCS5B01G516900 chr7D 94.595 185 8 2 1 185 603342430 603342248 4.380000e-73 285.0
15 TraesCS5B01G516900 chr7D 89.333 75 7 1 211 285 138440723 138440650 2.850000e-15 93.5
16 TraesCS5B01G516900 chr7D 84.444 90 9 5 211 299 520336192 520336107 1.720000e-12 84.2
17 TraesCS5B01G516900 chr7B 83.140 344 33 11 1586 1916 578223330 578222999 9.420000e-75 291.0
18 TraesCS5B01G516900 chr7B 77.462 457 75 19 1138 1583 578224637 578224198 5.750000e-62 248.0
19 TraesCS5B01G516900 chr1B 92.118 203 16 0 11 213 613934891 613934689 1.220000e-73 287.0
20 TraesCS5B01G516900 chr6B 95.028 181 8 1 1 181 219100885 219101064 1.580000e-72 283.0
21 TraesCS5B01G516900 chr1D 90.187 214 20 1 1 213 432197476 432197689 7.330000e-71 278.0
22 TraesCS5B01G516900 chr1D 90.411 73 6 1 211 283 110500731 110500660 7.930000e-16 95.3
23 TraesCS5B01G516900 chr2D 89.671 213 22 0 1 213 555236950 555237162 3.410000e-69 272.0
24 TraesCS5B01G516900 chr2D 89.333 75 8 0 211 285 645042229 645042155 7.930000e-16 95.3
25 TraesCS5B01G516900 chr2A 89.333 75 8 0 211 285 324635478 324635404 7.930000e-16 95.3
26 TraesCS5B01G516900 chr3B 88.312 77 9 0 211 287 38817321 38817397 2.850000e-15 93.5
27 TraesCS5B01G516900 chr3D 88.158 76 9 0 211 286 535741415 535741490 1.030000e-14 91.6
28 TraesCS5B01G516900 chr4D 89.041 73 7 1 211 283 111865954 111866025 3.690000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G516900 chr5B 680670798 680673487 2689 True 4968.00 4968 100.0000 1 2690 1 chr5B.!!$R2 2689
1 TraesCS5B01G516900 chr5B 680665090 680665744 654 True 654.00 654 84.9090 1107 1754 1 chr5B.!!$R1 647
2 TraesCS5B01G516900 chr5D 539048525 539052711 4186 True 1616.50 2560 85.3725 548 2690 2 chr5D.!!$R2 2142
3 TraesCS5B01G516900 chr4A 629455908 629461397 5489 False 739.75 1936 86.2400 504 2690 4 chr4A.!!$F1 2186
4 TraesCS5B01G516900 chr7D 535902287 535902935 648 True 518.00 518 81.5040 1138 1787 1 chr7D.!!$R3 649
5 TraesCS5B01G516900 chr7B 578222999 578224637 1638 True 269.50 291 80.3010 1138 1916 2 chr7B.!!$R1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.025898 GCCGATTTTTAGACGCCGAC 59.974 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 3029 1.077915 GCCCATGTGCCGAATTTTTG 58.922 50.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.974698 CGCCGCCCATGAGGAATC 60.975 66.667 0.00 0.00 38.24 2.52
42 43 2.192979 GCCGCCCATGAGGAATCA 59.807 61.111 0.00 0.00 38.24 2.57
43 44 1.453745 GCCGCCCATGAGGAATCAA 60.454 57.895 0.00 0.00 38.24 2.57
44 45 0.825010 GCCGCCCATGAGGAATCAAT 60.825 55.000 0.00 0.00 38.24 2.57
45 46 0.956633 CCGCCCATGAGGAATCAATG 59.043 55.000 0.00 0.00 38.24 2.82
46 47 0.956633 CGCCCATGAGGAATCAATGG 59.043 55.000 0.00 2.87 38.24 3.16
47 48 1.477377 CGCCCATGAGGAATCAATGGA 60.477 52.381 9.54 0.00 38.24 3.41
48 49 2.669781 GCCCATGAGGAATCAATGGAA 58.330 47.619 9.54 0.00 38.24 3.53
49 50 2.626743 GCCCATGAGGAATCAATGGAAG 59.373 50.000 9.54 0.00 38.24 3.46
50 51 3.228453 CCCATGAGGAATCAATGGAAGG 58.772 50.000 9.54 0.00 38.24 3.46
51 52 2.626743 CCATGAGGAATCAATGGAAGGC 59.373 50.000 0.00 0.00 36.89 4.35
52 53 3.563223 CATGAGGAATCAATGGAAGGCT 58.437 45.455 0.00 0.00 0.00 4.58
53 54 3.008835 TGAGGAATCAATGGAAGGCTG 57.991 47.619 0.00 0.00 0.00 4.85
54 55 2.305009 GAGGAATCAATGGAAGGCTGG 58.695 52.381 0.00 0.00 0.00 4.85
55 56 0.749049 GGAATCAATGGAAGGCTGGC 59.251 55.000 0.00 0.00 0.00 4.85
56 57 0.749049 GAATCAATGGAAGGCTGGCC 59.251 55.000 3.00 3.00 0.00 5.36
57 58 1.039233 AATCAATGGAAGGCTGGCCG 61.039 55.000 5.93 0.00 41.95 6.13
58 59 2.916527 ATCAATGGAAGGCTGGCCGG 62.917 60.000 7.41 7.41 41.95 6.13
79 80 3.357504 GCAGCCTTGGCATTGATTC 57.642 52.632 14.54 0.00 0.00 2.52
80 81 0.179092 GCAGCCTTGGCATTGATTCC 60.179 55.000 14.54 0.00 0.00 3.01
81 82 0.462789 CAGCCTTGGCATTGATTCCC 59.537 55.000 14.54 0.00 0.00 3.97
82 83 0.688749 AGCCTTGGCATTGATTCCCC 60.689 55.000 14.54 0.00 0.00 4.81
83 84 2.019897 GCCTTGGCATTGATTCCCCG 62.020 60.000 6.79 0.00 0.00 5.73
84 85 1.438814 CTTGGCATTGATTCCCCGC 59.561 57.895 0.00 0.00 0.00 6.13
85 86 2.340453 CTTGGCATTGATTCCCCGCG 62.340 60.000 0.00 0.00 0.00 6.46
86 87 3.595758 GGCATTGATTCCCCGCGG 61.596 66.667 21.04 21.04 0.00 6.46
87 88 3.595758 GCATTGATTCCCCGCGGG 61.596 66.667 37.99 37.99 46.11 6.13
102 103 2.281276 GGGAAACCGAGGCGTTGT 60.281 61.111 0.00 0.00 43.64 3.32
103 104 2.613506 GGGAAACCGAGGCGTTGTG 61.614 63.158 0.00 0.00 43.64 3.33
104 105 1.595929 GGAAACCGAGGCGTTGTGA 60.596 57.895 0.00 0.00 0.00 3.58
105 106 1.566018 GGAAACCGAGGCGTTGTGAG 61.566 60.000 0.00 0.00 0.00 3.51
106 107 1.566018 GAAACCGAGGCGTTGTGAGG 61.566 60.000 0.00 0.00 0.00 3.86
107 108 2.035237 AAACCGAGGCGTTGTGAGGA 62.035 55.000 0.00 0.00 0.00 3.71
108 109 2.432628 CCGAGGCGTTGTGAGGAC 60.433 66.667 0.00 0.00 0.00 3.85
109 110 2.805353 CGAGGCGTTGTGAGGACG 60.805 66.667 0.00 0.00 43.04 4.79
110 111 2.649034 GAGGCGTTGTGAGGACGA 59.351 61.111 0.33 0.00 42.82 4.20
115 116 4.554163 GTTGTGAGGACGACGAGG 57.446 61.111 0.00 0.00 0.00 4.63
116 117 1.733399 GTTGTGAGGACGACGAGGC 60.733 63.158 0.00 0.00 0.00 4.70
117 118 3.263503 TTGTGAGGACGACGAGGCG 62.264 63.158 0.00 0.00 37.29 5.52
118 119 3.429141 GTGAGGACGACGAGGCGA 61.429 66.667 4.95 0.00 34.83 5.54
119 120 3.125573 TGAGGACGACGAGGCGAG 61.126 66.667 4.95 0.00 34.83 5.03
120 121 3.126225 GAGGACGACGAGGCGAGT 61.126 66.667 4.95 0.00 34.83 4.18
121 122 3.384014 GAGGACGACGAGGCGAGTG 62.384 68.421 4.95 0.00 34.83 3.51
122 123 3.735029 GGACGACGAGGCGAGTGT 61.735 66.667 4.95 0.00 34.83 3.55
123 124 2.202324 GACGACGAGGCGAGTGTC 60.202 66.667 4.95 0.00 34.83 3.67
134 135 2.505118 GAGTGTCGCTGACTCGGC 60.505 66.667 0.00 0.00 33.15 5.54
170 171 4.536687 CGCCAAAATCGCTCGCCC 62.537 66.667 0.00 0.00 0.00 6.13
171 172 4.193334 GCCAAAATCGCTCGCCCC 62.193 66.667 0.00 0.00 0.00 5.80
172 173 3.876198 CCAAAATCGCTCGCCCCG 61.876 66.667 0.00 0.00 0.00 5.73
173 174 3.876198 CAAAATCGCTCGCCCCGG 61.876 66.667 0.00 0.00 0.00 5.73
204 205 4.280019 GTCGGGTTTGGCCTGGGT 62.280 66.667 3.32 0.00 43.94 4.51
205 206 2.529643 TCGGGTTTGGCCTGGGTA 60.530 61.111 3.32 0.00 43.94 3.69
206 207 2.360726 CGGGTTTGGCCTGGGTAC 60.361 66.667 3.32 0.00 40.02 3.34
207 208 2.360726 GGGTTTGGCCTGGGTACG 60.361 66.667 3.32 0.00 37.43 3.67
208 209 3.060000 GGTTTGGCCTGGGTACGC 61.060 66.667 3.32 2.35 0.00 4.42
209 210 3.060000 GTTTGGCCTGGGTACGCC 61.060 66.667 3.32 4.99 45.92 5.68
218 219 4.843719 GGGTACGCCGGCCGATTT 62.844 66.667 30.73 12.45 41.02 2.17
219 220 2.820922 GGTACGCCGGCCGATTTT 60.821 61.111 30.73 10.40 41.02 1.82
220 221 2.400962 GGTACGCCGGCCGATTTTT 61.401 57.895 30.73 8.40 41.02 1.94
221 222 1.088910 GGTACGCCGGCCGATTTTTA 61.089 55.000 30.73 7.29 41.02 1.52
222 223 0.302589 GTACGCCGGCCGATTTTTAG 59.697 55.000 30.73 9.14 41.02 1.85
223 224 0.175302 TACGCCGGCCGATTTTTAGA 59.825 50.000 30.73 0.00 41.02 2.10
224 225 1.350665 CGCCGGCCGATTTTTAGAC 59.649 57.895 30.73 3.29 40.02 2.59
225 226 1.350665 GCCGGCCGATTTTTAGACG 59.649 57.895 30.73 6.52 0.00 4.18
226 227 1.350665 CCGGCCGATTTTTAGACGC 59.649 57.895 30.73 0.00 0.00 5.19
227 228 1.350665 CGGCCGATTTTTAGACGCC 59.649 57.895 24.07 0.00 0.00 5.68
228 229 1.350665 GGCCGATTTTTAGACGCCG 59.649 57.895 0.00 0.00 0.00 6.46
229 230 1.085501 GGCCGATTTTTAGACGCCGA 61.086 55.000 0.00 0.00 0.00 5.54
230 231 0.025898 GCCGATTTTTAGACGCCGAC 59.974 55.000 0.00 0.00 0.00 4.79
232 233 0.314021 CGATTTTTAGACGCCGACGC 60.314 55.000 0.00 0.00 45.53 5.19
258 259 5.485209 AAAATCGTCTAGAAAGGGTCTGT 57.515 39.130 0.00 0.00 37.12 3.41
259 260 5.485209 AAATCGTCTAGAAAGGGTCTGTT 57.515 39.130 0.00 0.00 37.12 3.16
260 261 3.936372 TCGTCTAGAAAGGGTCTGTTG 57.064 47.619 0.00 0.00 37.12 3.33
261 262 2.561419 TCGTCTAGAAAGGGTCTGTTGG 59.439 50.000 0.00 0.00 37.12 3.77
262 263 2.353803 CGTCTAGAAAGGGTCTGTTGGG 60.354 54.545 0.00 0.00 37.12 4.12
263 264 2.027100 GTCTAGAAAGGGTCTGTTGGGG 60.027 54.545 0.00 0.00 37.12 4.96
264 265 1.282157 CTAGAAAGGGTCTGTTGGGGG 59.718 57.143 0.00 0.00 37.12 5.40
265 266 1.606601 GAAAGGGTCTGTTGGGGGC 60.607 63.158 0.00 0.00 0.00 5.80
266 267 3.507377 AAAGGGTCTGTTGGGGGCG 62.507 63.158 0.00 0.00 0.00 6.13
282 283 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
283 284 2.849964 CGCGGCTGGAGATGCTCTA 61.850 63.158 0.00 0.00 0.00 2.43
284 285 1.443407 GCGGCTGGAGATGCTCTAA 59.557 57.895 0.00 0.00 0.00 2.10
285 286 0.599728 GCGGCTGGAGATGCTCTAAG 60.600 60.000 0.00 0.00 0.00 2.18
286 287 1.035923 CGGCTGGAGATGCTCTAAGA 58.964 55.000 0.00 0.00 0.00 2.10
287 288 1.410517 CGGCTGGAGATGCTCTAAGAA 59.589 52.381 0.00 0.00 0.00 2.52
288 289 2.545532 CGGCTGGAGATGCTCTAAGAAG 60.546 54.545 0.00 0.00 0.00 2.85
289 290 2.433970 GGCTGGAGATGCTCTAAGAAGT 59.566 50.000 0.00 0.00 0.00 3.01
290 291 3.492482 GGCTGGAGATGCTCTAAGAAGTC 60.492 52.174 0.00 0.00 0.00 3.01
291 292 3.384467 GCTGGAGATGCTCTAAGAAGTCT 59.616 47.826 0.00 0.00 0.00 3.24
292 293 4.737352 GCTGGAGATGCTCTAAGAAGTCTG 60.737 50.000 0.00 0.00 0.00 3.51
293 294 3.703556 TGGAGATGCTCTAAGAAGTCTGG 59.296 47.826 0.00 0.00 0.00 3.86
294 295 3.704061 GGAGATGCTCTAAGAAGTCTGGT 59.296 47.826 0.00 0.00 0.00 4.00
295 296 4.161377 GGAGATGCTCTAAGAAGTCTGGTT 59.839 45.833 0.00 0.00 0.00 3.67
296 297 5.337578 AGATGCTCTAAGAAGTCTGGTTC 57.662 43.478 0.00 0.00 0.00 3.62
297 298 3.963428 TGCTCTAAGAAGTCTGGTTCC 57.037 47.619 0.00 0.00 0.00 3.62
298 299 3.511477 TGCTCTAAGAAGTCTGGTTCCT 58.489 45.455 0.00 0.00 0.00 3.36
299 300 3.904339 TGCTCTAAGAAGTCTGGTTCCTT 59.096 43.478 0.00 0.00 0.00 3.36
300 301 4.021016 TGCTCTAAGAAGTCTGGTTCCTTC 60.021 45.833 0.00 0.00 37.85 3.46
301 302 4.739195 CTCTAAGAAGTCTGGTTCCTTCG 58.261 47.826 0.00 0.00 41.51 3.79
302 303 2.841442 AAGAAGTCTGGTTCCTTCGG 57.159 50.000 0.00 0.00 41.51 4.30
303 304 0.977395 AGAAGTCTGGTTCCTTCGGG 59.023 55.000 0.00 0.00 41.51 5.14
304 305 0.036294 GAAGTCTGGTTCCTTCGGGG 60.036 60.000 0.00 0.00 35.37 5.73
305 306 2.046217 GTCTGGTTCCTTCGGGGC 60.046 66.667 0.00 0.00 35.37 5.80
306 307 3.327404 TCTGGTTCCTTCGGGGCC 61.327 66.667 0.00 0.00 35.37 5.80
307 308 4.426313 CTGGTTCCTTCGGGGCCC 62.426 72.222 15.76 15.76 35.37 5.80
308 309 4.995058 TGGTTCCTTCGGGGCCCT 62.995 66.667 24.38 0.00 35.37 5.19
309 310 3.658422 GGTTCCTTCGGGGCCCTT 61.658 66.667 24.38 0.00 35.37 3.95
310 311 2.045242 GTTCCTTCGGGGCCCTTC 60.045 66.667 24.38 4.51 35.37 3.46
311 312 2.204090 TTCCTTCGGGGCCCTTCT 60.204 61.111 24.38 0.00 35.37 2.85
312 313 1.850755 TTCCTTCGGGGCCCTTCTT 60.851 57.895 24.38 0.00 35.37 2.52
313 314 2.044946 CCTTCGGGGCCCTTCTTG 60.045 66.667 24.38 4.23 0.00 3.02
314 315 2.602676 CCTTCGGGGCCCTTCTTGA 61.603 63.158 24.38 7.05 0.00 3.02
315 316 1.078143 CTTCGGGGCCCTTCTTGAG 60.078 63.158 24.38 7.70 0.00 3.02
316 317 1.842381 CTTCGGGGCCCTTCTTGAGT 61.842 60.000 24.38 0.00 0.00 3.41
317 318 1.423794 TTCGGGGCCCTTCTTGAGTT 61.424 55.000 24.38 0.00 0.00 3.01
318 319 1.074951 CGGGGCCCTTCTTGAGTTT 59.925 57.895 24.38 0.00 0.00 2.66
319 320 0.326927 CGGGGCCCTTCTTGAGTTTA 59.673 55.000 24.38 0.00 0.00 2.01
320 321 1.271707 CGGGGCCCTTCTTGAGTTTAA 60.272 52.381 24.38 0.00 0.00 1.52
321 322 2.816337 CGGGGCCCTTCTTGAGTTTAAA 60.816 50.000 24.38 0.00 0.00 1.52
322 323 3.236047 GGGGCCCTTCTTGAGTTTAAAA 58.764 45.455 24.38 0.00 0.00 1.52
323 324 3.644265 GGGGCCCTTCTTGAGTTTAAAAA 59.356 43.478 24.38 0.00 0.00 1.94
324 325 4.262463 GGGGCCCTTCTTGAGTTTAAAAAG 60.262 45.833 24.38 0.00 0.00 2.27
325 326 4.587262 GGGCCCTTCTTGAGTTTAAAAAGA 59.413 41.667 17.04 0.00 0.00 2.52
326 327 5.069914 GGGCCCTTCTTGAGTTTAAAAAGAA 59.930 40.000 17.04 11.29 37.54 2.52
327 328 6.407639 GGGCCCTTCTTGAGTTTAAAAAGAAA 60.408 38.462 17.04 1.51 38.94 2.52
328 329 7.045416 GGCCCTTCTTGAGTTTAAAAAGAAAA 58.955 34.615 12.38 0.00 38.94 2.29
329 330 7.224753 GGCCCTTCTTGAGTTTAAAAAGAAAAG 59.775 37.037 12.38 8.89 38.94 2.27
330 331 7.979537 GCCCTTCTTGAGTTTAAAAAGAAAAGA 59.020 33.333 12.38 5.83 38.94 2.52
331 332 9.869757 CCCTTCTTGAGTTTAAAAAGAAAAGAA 57.130 29.630 12.38 11.16 38.94 2.52
356 357 5.852282 AAAAACTCAACATGTGCCTAACT 57.148 34.783 0.00 0.00 0.00 2.24
357 358 4.836125 AAACTCAACATGTGCCTAACTG 57.164 40.909 0.00 0.00 0.00 3.16
358 359 3.769739 ACTCAACATGTGCCTAACTGA 57.230 42.857 0.00 0.00 0.00 3.41
359 360 3.403038 ACTCAACATGTGCCTAACTGAC 58.597 45.455 0.00 0.00 0.00 3.51
360 361 3.181455 ACTCAACATGTGCCTAACTGACA 60.181 43.478 0.00 0.00 0.00 3.58
361 362 3.138304 TCAACATGTGCCTAACTGACAC 58.862 45.455 0.00 0.00 34.86 3.67
362 363 2.185004 ACATGTGCCTAACTGACACC 57.815 50.000 0.00 0.00 33.30 4.16
363 364 1.419762 ACATGTGCCTAACTGACACCA 59.580 47.619 0.00 0.00 33.30 4.17
364 365 2.040278 ACATGTGCCTAACTGACACCAT 59.960 45.455 0.00 0.00 33.30 3.55
365 366 3.263170 ACATGTGCCTAACTGACACCATA 59.737 43.478 0.00 0.00 33.30 2.74
366 367 3.328382 TGTGCCTAACTGACACCATAC 57.672 47.619 0.00 0.00 33.30 2.39
367 368 2.635427 TGTGCCTAACTGACACCATACA 59.365 45.455 0.00 0.00 33.30 2.29
368 369 3.071747 TGTGCCTAACTGACACCATACAA 59.928 43.478 0.00 0.00 33.30 2.41
369 370 3.684788 GTGCCTAACTGACACCATACAAG 59.315 47.826 0.00 0.00 0.00 3.16
370 371 3.326588 TGCCTAACTGACACCATACAAGT 59.673 43.478 0.00 0.00 0.00 3.16
371 372 3.933332 GCCTAACTGACACCATACAAGTC 59.067 47.826 0.00 0.00 0.00 3.01
372 373 4.562757 GCCTAACTGACACCATACAAGTCA 60.563 45.833 0.00 0.00 39.74 3.41
373 374 5.547465 CCTAACTGACACCATACAAGTCAA 58.453 41.667 0.00 0.00 41.27 3.18
374 375 5.995282 CCTAACTGACACCATACAAGTCAAA 59.005 40.000 0.00 0.00 41.27 2.69
375 376 5.751243 AACTGACACCATACAAGTCAAAC 57.249 39.130 0.00 0.00 41.27 2.93
376 377 4.776349 ACTGACACCATACAAGTCAAACA 58.224 39.130 0.00 0.00 41.27 2.83
377 378 5.376625 ACTGACACCATACAAGTCAAACAT 58.623 37.500 0.00 0.00 41.27 2.71
378 379 5.239306 ACTGACACCATACAAGTCAAACATG 59.761 40.000 0.00 0.00 41.27 3.21
379 380 4.518590 TGACACCATACAAGTCAAACATGG 59.481 41.667 0.00 0.00 39.15 3.66
381 382 5.626142 ACACCATACAAGTCAAACATGGTA 58.374 37.500 4.34 0.00 45.87 3.25
382 383 6.065374 ACACCATACAAGTCAAACATGGTAA 58.935 36.000 4.34 0.00 45.87 2.85
383 384 6.547880 ACACCATACAAGTCAAACATGGTAAA 59.452 34.615 4.34 0.00 45.87 2.01
384 385 7.068839 ACACCATACAAGTCAAACATGGTAAAA 59.931 33.333 4.34 0.00 45.87 1.52
385 386 7.923344 CACCATACAAGTCAAACATGGTAAAAA 59.077 33.333 4.34 0.00 45.87 1.94
413 414 6.835914 AGCTTCACTGTATTTTCAGAATTCG 58.164 36.000 0.00 0.00 38.63 3.34
414 415 6.650807 AGCTTCACTGTATTTTCAGAATTCGA 59.349 34.615 0.00 0.00 38.63 3.71
415 416 7.173218 AGCTTCACTGTATTTTCAGAATTCGAA 59.827 33.333 0.00 0.00 38.63 3.71
416 417 7.965107 GCTTCACTGTATTTTCAGAATTCGAAT 59.035 33.333 4.39 4.39 38.63 3.34
417 418 9.831737 CTTCACTGTATTTTCAGAATTCGAATT 57.168 29.630 22.93 22.93 38.63 2.17
418 419 9.825972 TTCACTGTATTTTCAGAATTCGAATTC 57.174 29.630 33.73 33.73 43.96 2.17
419 420 8.450964 TCACTGTATTTTCAGAATTCGAATTCC 58.549 33.333 35.72 22.82 44.55 3.01
420 421 8.236586 CACTGTATTTTCAGAATTCGAATTCCA 58.763 33.333 35.72 24.82 44.55 3.53
421 422 8.454106 ACTGTATTTTCAGAATTCGAATTCCAG 58.546 33.333 35.72 31.58 44.55 3.86
422 423 8.560355 TGTATTTTCAGAATTCGAATTCCAGA 57.440 30.769 35.72 30.95 44.55 3.86
423 424 9.177608 TGTATTTTCAGAATTCGAATTCCAGAT 57.822 29.630 35.72 25.89 44.55 2.90
434 435 4.403453 CGAATTCCAGATTCGTTCAAACC 58.597 43.478 11.74 0.00 43.97 3.27
435 436 4.403453 GAATTCCAGATTCGTTCAAACCG 58.597 43.478 0.00 0.00 0.00 4.44
436 437 2.536761 TCCAGATTCGTTCAAACCGT 57.463 45.000 0.00 0.00 0.00 4.83
437 438 2.139917 TCCAGATTCGTTCAAACCGTG 58.860 47.619 0.00 0.00 0.00 4.94
438 439 1.399727 CCAGATTCGTTCAAACCGTGC 60.400 52.381 0.00 0.00 0.00 5.34
439 440 1.531149 CAGATTCGTTCAAACCGTGCT 59.469 47.619 0.00 0.00 0.00 4.40
440 441 2.032030 CAGATTCGTTCAAACCGTGCTT 60.032 45.455 0.00 0.00 0.00 3.91
441 442 3.185594 CAGATTCGTTCAAACCGTGCTTA 59.814 43.478 0.00 0.00 0.00 3.09
442 443 3.810941 AGATTCGTTCAAACCGTGCTTAA 59.189 39.130 0.00 0.00 0.00 1.85
443 444 3.322230 TTCGTTCAAACCGTGCTTAAC 57.678 42.857 0.00 0.00 0.00 2.01
444 445 2.277969 TCGTTCAAACCGTGCTTAACA 58.722 42.857 0.00 0.00 0.00 2.41
445 446 2.873472 TCGTTCAAACCGTGCTTAACAT 59.127 40.909 0.00 0.00 0.00 2.71
446 447 2.970609 CGTTCAAACCGTGCTTAACATG 59.029 45.455 0.00 0.00 34.83 3.21
447 448 3.303461 CGTTCAAACCGTGCTTAACATGA 60.303 43.478 0.00 0.00 37.49 3.07
448 449 4.612712 CGTTCAAACCGTGCTTAACATGAT 60.613 41.667 0.00 0.00 37.49 2.45
449 450 4.678509 TCAAACCGTGCTTAACATGATC 57.321 40.909 0.00 0.00 37.49 2.92
450 451 4.323417 TCAAACCGTGCTTAACATGATCT 58.677 39.130 0.00 0.00 37.49 2.75
451 452 4.759693 TCAAACCGTGCTTAACATGATCTT 59.240 37.500 0.00 0.00 37.49 2.40
452 453 4.685169 AACCGTGCTTAACATGATCTTG 57.315 40.909 0.00 7.04 37.49 3.02
453 454 3.674997 ACCGTGCTTAACATGATCTTGT 58.325 40.909 8.37 8.37 37.49 3.16
454 455 4.072131 ACCGTGCTTAACATGATCTTGTT 58.928 39.130 25.03 25.03 42.31 2.83
455 456 4.518970 ACCGTGCTTAACATGATCTTGTTT 59.481 37.500 26.34 14.01 40.25 2.83
456 457 5.009610 ACCGTGCTTAACATGATCTTGTTTT 59.990 36.000 26.34 10.76 40.25 2.43
457 458 5.343058 CCGTGCTTAACATGATCTTGTTTTG 59.657 40.000 26.34 20.22 40.25 2.44
458 459 6.142139 CGTGCTTAACATGATCTTGTTTTGA 58.858 36.000 26.34 14.78 40.25 2.69
459 460 6.636447 CGTGCTTAACATGATCTTGTTTTGAA 59.364 34.615 26.34 16.28 40.25 2.69
460 461 7.149080 CGTGCTTAACATGATCTTGTTTTGAAG 60.149 37.037 26.34 23.07 40.25 3.02
461 462 7.862372 GTGCTTAACATGATCTTGTTTTGAAGA 59.138 33.333 26.34 13.73 40.25 2.87
462 463 8.579006 TGCTTAACATGATCTTGTTTTGAAGAT 58.421 29.630 26.34 7.65 43.92 2.40
467 468 4.622701 GATCTTGTTTTGAAGATCCCCG 57.377 45.455 10.82 0.00 46.99 5.73
468 469 3.502123 TCTTGTTTTGAAGATCCCCGT 57.498 42.857 0.00 0.00 0.00 5.28
469 470 3.408634 TCTTGTTTTGAAGATCCCCGTC 58.591 45.455 0.00 0.00 0.00 4.79
470 471 2.940994 TGTTTTGAAGATCCCCGTCA 57.059 45.000 0.00 0.00 0.00 4.35
471 472 2.778299 TGTTTTGAAGATCCCCGTCAG 58.222 47.619 0.00 0.00 34.85 3.51
472 473 1.468914 GTTTTGAAGATCCCCGTCAGC 59.531 52.381 0.00 0.00 34.85 4.26
473 474 0.035439 TTTGAAGATCCCCGTCAGCC 60.035 55.000 0.00 0.00 34.85 4.85
474 475 0.909610 TTGAAGATCCCCGTCAGCCT 60.910 55.000 0.00 0.00 34.85 4.58
475 476 0.032515 TGAAGATCCCCGTCAGCCTA 60.033 55.000 0.00 0.00 0.00 3.93
476 477 1.120530 GAAGATCCCCGTCAGCCTAA 58.879 55.000 0.00 0.00 0.00 2.69
477 478 1.485066 GAAGATCCCCGTCAGCCTAAA 59.515 52.381 0.00 0.00 0.00 1.85
478 479 1.807814 AGATCCCCGTCAGCCTAAAT 58.192 50.000 0.00 0.00 0.00 1.40
479 480 1.694696 AGATCCCCGTCAGCCTAAATC 59.305 52.381 0.00 0.00 0.00 2.17
480 481 0.393077 ATCCCCGTCAGCCTAAATCG 59.607 55.000 0.00 0.00 0.00 3.34
481 482 1.227556 CCCCGTCAGCCTAAATCGG 60.228 63.158 0.00 0.00 40.72 4.18
482 483 1.682451 CCCCGTCAGCCTAAATCGGA 61.682 60.000 3.45 0.00 43.22 4.55
483 484 0.393077 CCCGTCAGCCTAAATCGGAT 59.607 55.000 3.45 0.00 43.22 4.18
484 485 1.605712 CCCGTCAGCCTAAATCGGATC 60.606 57.143 3.45 0.00 43.22 3.36
485 486 1.068588 CCGTCAGCCTAAATCGGATCA 59.931 52.381 0.00 0.00 43.22 2.92
486 487 2.289072 CCGTCAGCCTAAATCGGATCAT 60.289 50.000 0.00 0.00 43.22 2.45
487 488 3.056821 CCGTCAGCCTAAATCGGATCATA 60.057 47.826 0.00 0.00 43.22 2.15
488 489 4.556233 CGTCAGCCTAAATCGGATCATAA 58.444 43.478 0.00 0.00 0.00 1.90
489 490 4.988540 CGTCAGCCTAAATCGGATCATAAA 59.011 41.667 0.00 0.00 0.00 1.40
490 491 5.639506 CGTCAGCCTAAATCGGATCATAAAT 59.360 40.000 0.00 0.00 0.00 1.40
491 492 6.183360 CGTCAGCCTAAATCGGATCATAAATC 60.183 42.308 0.00 0.00 0.00 2.17
492 493 6.650807 GTCAGCCTAAATCGGATCATAAATCA 59.349 38.462 0.00 0.00 0.00 2.57
493 494 6.875726 TCAGCCTAAATCGGATCATAAATCAG 59.124 38.462 0.00 0.00 0.00 2.90
494 495 6.875726 CAGCCTAAATCGGATCATAAATCAGA 59.124 38.462 0.00 0.00 0.00 3.27
495 496 6.876257 AGCCTAAATCGGATCATAAATCAGAC 59.124 38.462 0.00 0.00 0.00 3.51
496 497 6.183360 GCCTAAATCGGATCATAAATCAGACG 60.183 42.308 0.00 0.00 0.00 4.18
497 498 6.868864 CCTAAATCGGATCATAAATCAGACGT 59.131 38.462 0.00 0.00 0.00 4.34
498 499 8.027189 CCTAAATCGGATCATAAATCAGACGTA 58.973 37.037 0.00 0.00 0.00 3.57
499 500 9.406828 CTAAATCGGATCATAAATCAGACGTAA 57.593 33.333 0.00 0.00 0.00 3.18
501 502 5.769367 TCGGATCATAAATCAGACGTAAGG 58.231 41.667 0.00 0.00 46.39 2.69
502 503 5.301045 TCGGATCATAAATCAGACGTAAGGT 59.699 40.000 0.00 0.00 46.39 3.50
539 543 4.385825 ACTACAAAGCGTTGGAATCAAGA 58.614 39.130 16.80 0.00 39.22 3.02
566 570 1.134401 ACTATGGAGGCATCACCAACG 60.134 52.381 0.00 0.00 43.14 4.10
711 722 2.359850 GCGAGGCAACCACCATCA 60.360 61.111 0.00 0.00 37.17 3.07
740 751 4.385405 GCTGCCACGGCTGAGAGT 62.385 66.667 18.09 0.00 41.63 3.24
804 815 4.729918 GACCCACTGGCCAGCAGG 62.730 72.222 33.06 31.86 38.23 4.85
810 832 2.435586 CTGGCCAGCAGGTCTTCG 60.436 66.667 22.33 0.00 41.31 3.79
834 856 1.006400 TCTCCTCTGCTCACATCTGGA 59.994 52.381 0.00 0.00 0.00 3.86
835 857 1.136695 CTCCTCTGCTCACATCTGGAC 59.863 57.143 0.00 0.00 0.00 4.02
836 858 0.179116 CCTCTGCTCACATCTGGACG 60.179 60.000 0.00 0.00 0.00 4.79
837 859 0.179116 CTCTGCTCACATCTGGACGG 60.179 60.000 0.00 0.00 0.00 4.79
838 860 1.153489 CTGCTCACATCTGGACGGG 60.153 63.158 0.00 0.00 0.00 5.28
839 861 2.187946 GCTCACATCTGGACGGGG 59.812 66.667 0.00 0.00 0.00 5.73
896 940 1.911471 CTCCAGCCCCCTTCTTCTC 59.089 63.158 0.00 0.00 0.00 2.87
936 980 3.905678 CTCCACGCTCCTAGCCGG 61.906 72.222 0.00 0.00 38.18 6.13
941 985 3.917760 CGCTCCTAGCCGGGGAAG 61.918 72.222 2.18 0.00 38.18 3.46
942 986 3.551407 GCTCCTAGCCGGGGAAGG 61.551 72.222 2.18 0.00 33.87 3.46
1009 1069 1.908619 TGAGCTAAGCCATGGTCTTCA 59.091 47.619 20.29 12.25 0.00 3.02
1010 1070 2.284190 GAGCTAAGCCATGGTCTTCAC 58.716 52.381 20.29 14.87 0.00 3.18
1015 1075 0.904865 AGCCATGGTCTTCACGGAGA 60.905 55.000 14.67 0.00 28.24 3.71
1021 1081 1.512310 GTCTTCACGGAGAGCGACG 60.512 63.158 0.00 0.00 0.00 5.12
1085 1148 4.363990 CGAGTGCAGCTGGACCGT 62.364 66.667 31.80 16.93 37.04 4.83
1734 2701 4.559153 CCATCACTTGATTTGGTTTGGTC 58.441 43.478 0.00 0.00 31.21 4.02
1770 2737 4.489679 AAAAATCGGTTCTTGCTCTGTC 57.510 40.909 0.00 0.00 0.00 3.51
1787 2758 6.094742 TGCTCTGTCTTCTTCATCAGTACTAG 59.905 42.308 0.00 0.00 0.00 2.57
1803 2778 7.859540 TCAGTACTAGTAGTAGTGGAGAACAT 58.140 38.462 31.36 4.41 46.83 2.71
1834 2809 4.202223 TGTCTCTTCTAGTGTCACCCAAAC 60.202 45.833 0.00 0.00 0.00 2.93
2035 3031 6.709018 ACGGGAAAAAGAGAGAAATTTCAA 57.291 33.333 19.99 0.00 34.31 2.69
2145 3142 8.611051 AGGAACATTGTATTTACTCTCTACCT 57.389 34.615 0.00 0.00 0.00 3.08
2277 3443 7.654116 GGAAACTTGGGAAAATTGTAAATTCGA 59.346 33.333 0.00 0.00 0.00 3.71
2287 3453 3.066291 TGTAAATTCGACACATGGGCT 57.934 42.857 0.00 0.00 0.00 5.19
2288 3454 3.417101 TGTAAATTCGACACATGGGCTT 58.583 40.909 0.00 0.00 0.00 4.35
2354 3524 1.151668 ACAGCACATTCGCTTCAGAC 58.848 50.000 0.00 0.00 41.38 3.51
2358 3528 3.371898 CAGCACATTCGCTTCAGACATTA 59.628 43.478 0.00 0.00 41.38 1.90
2373 3543 2.091541 ACATTAGGATTTGCCACCACG 58.908 47.619 0.00 0.00 40.02 4.94
2397 3674 1.106944 CCGGCCGCCCAAAAATCTAT 61.107 55.000 22.85 0.00 0.00 1.98
2463 3740 7.804614 TTTGAACCATTTTAATCCGATTTCG 57.195 32.000 0.00 0.00 39.44 3.46
2480 3757 4.148825 GGACATGTCGGGCTCGCT 62.149 66.667 19.33 0.00 36.13 4.93
2492 3769 2.267006 CTCGCTGGTCAGTGCCAT 59.733 61.111 6.65 0.00 37.96 4.40
2513 3790 6.866480 CCATGTGGCACTAAGAATTAACAAT 58.134 36.000 19.83 0.00 0.00 2.71
2533 3810 7.245419 ACAATGTTTGTTTTGACCATTAAGC 57.755 32.000 0.00 0.00 42.22 3.09
2552 3829 0.395724 CCAGATGTGGGGTTTAGGGC 60.396 60.000 0.00 0.00 40.67 5.19
2560 3838 3.656751 TGTGGGGTTTAGGGCTTTAAGTA 59.343 43.478 0.00 0.00 0.00 2.24
2610 3893 1.118838 GAGCTGGCACACCTATCTCT 58.881 55.000 0.00 0.00 36.63 3.10
2614 3897 2.355108 GCTGGCACACCTATCTCTTCAA 60.355 50.000 0.00 0.00 36.63 2.69
2621 3904 5.105310 GCACACCTATCTCTTCAACCTTCTA 60.105 44.000 0.00 0.00 0.00 2.10
2652 3935 0.392998 CCCTCCACATGTCTTTCCCG 60.393 60.000 0.00 0.00 0.00 5.14
2664 3947 3.198872 GTCTTTCCCGATGAACATCTCC 58.801 50.000 12.05 0.00 35.72 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.974698 GATTCCTCATGGGCGGCG 60.975 66.667 0.51 0.51 34.39 6.46
25 26 0.825010 ATTGATTCCTCATGGGCGGC 60.825 55.000 0.00 0.00 34.39 6.53
26 27 0.956633 CATTGATTCCTCATGGGCGG 59.043 55.000 0.00 0.00 34.39 6.13
27 28 0.956633 CCATTGATTCCTCATGGGCG 59.043 55.000 0.00 0.00 31.63 6.13
28 29 2.369983 TCCATTGATTCCTCATGGGC 57.630 50.000 0.00 0.00 33.96 5.36
29 30 3.228453 CCTTCCATTGATTCCTCATGGG 58.772 50.000 0.00 0.00 33.96 4.00
30 31 2.626743 GCCTTCCATTGATTCCTCATGG 59.373 50.000 0.00 0.00 34.22 3.66
31 32 3.318275 CAGCCTTCCATTGATTCCTCATG 59.682 47.826 0.00 0.00 0.00 3.07
32 33 3.563223 CAGCCTTCCATTGATTCCTCAT 58.437 45.455 0.00 0.00 0.00 2.90
33 34 2.357465 CCAGCCTTCCATTGATTCCTCA 60.357 50.000 0.00 0.00 0.00 3.86
34 35 2.305009 CCAGCCTTCCATTGATTCCTC 58.695 52.381 0.00 0.00 0.00 3.71
35 36 1.687368 GCCAGCCTTCCATTGATTCCT 60.687 52.381 0.00 0.00 0.00 3.36
36 37 0.749049 GCCAGCCTTCCATTGATTCC 59.251 55.000 0.00 0.00 0.00 3.01
37 38 0.749049 GGCCAGCCTTCCATTGATTC 59.251 55.000 0.00 0.00 0.00 2.52
38 39 1.039233 CGGCCAGCCTTCCATTGATT 61.039 55.000 2.24 0.00 0.00 2.57
39 40 1.454479 CGGCCAGCCTTCCATTGAT 60.454 57.895 2.24 0.00 0.00 2.57
40 41 2.045045 CGGCCAGCCTTCCATTGA 60.045 61.111 2.24 0.00 0.00 2.57
41 42 3.142838 CCGGCCAGCCTTCCATTG 61.143 66.667 2.24 0.00 0.00 2.82
58 59 4.807039 CAATGCCAAGGCTGCCGC 62.807 66.667 13.96 11.58 42.51 6.53
59 60 1.952102 AATCAATGCCAAGGCTGCCG 61.952 55.000 13.96 0.00 42.51 5.69
60 61 0.179092 GAATCAATGCCAAGGCTGCC 60.179 55.000 11.65 11.65 42.51 4.85
61 62 0.179092 GGAATCAATGCCAAGGCTGC 60.179 55.000 12.96 0.00 42.51 5.25
62 63 0.462789 GGGAATCAATGCCAAGGCTG 59.537 55.000 12.96 3.28 39.85 4.85
63 64 0.688749 GGGGAATCAATGCCAAGGCT 60.689 55.000 12.96 0.00 42.44 4.58
64 65 1.825341 GGGGAATCAATGCCAAGGC 59.175 57.895 3.61 3.61 42.44 4.35
65 66 2.019897 GCGGGGAATCAATGCCAAGG 62.020 60.000 0.00 0.00 42.44 3.61
66 67 1.438814 GCGGGGAATCAATGCCAAG 59.561 57.895 0.00 0.00 42.44 3.61
67 68 2.413963 CGCGGGGAATCAATGCCAA 61.414 57.895 0.00 0.00 42.44 4.52
68 69 2.828095 CGCGGGGAATCAATGCCA 60.828 61.111 0.00 0.00 42.44 4.92
69 70 3.595758 CCGCGGGGAATCAATGCC 61.596 66.667 20.10 0.00 39.22 4.40
85 86 2.281276 ACAACGCCTCGGTTTCCC 60.281 61.111 0.00 0.00 0.00 3.97
86 87 1.566018 CTCACAACGCCTCGGTTTCC 61.566 60.000 0.00 0.00 0.00 3.13
87 88 1.566018 CCTCACAACGCCTCGGTTTC 61.566 60.000 0.00 0.00 0.00 2.78
88 89 1.597027 CCTCACAACGCCTCGGTTT 60.597 57.895 0.00 0.00 0.00 3.27
89 90 2.030562 CCTCACAACGCCTCGGTT 59.969 61.111 0.00 0.00 0.00 4.44
90 91 2.915659 TCCTCACAACGCCTCGGT 60.916 61.111 0.00 0.00 0.00 4.69
91 92 2.432628 GTCCTCACAACGCCTCGG 60.433 66.667 0.00 0.00 0.00 4.63
92 93 2.805353 CGTCCTCACAACGCCTCG 60.805 66.667 0.00 0.00 32.84 4.63
93 94 1.733399 GTCGTCCTCACAACGCCTC 60.733 63.158 0.00 0.00 39.90 4.70
94 95 2.338984 GTCGTCCTCACAACGCCT 59.661 61.111 0.00 0.00 39.90 5.52
95 96 3.103911 CGTCGTCCTCACAACGCC 61.104 66.667 0.00 0.00 39.90 5.68
96 97 2.050714 TCGTCGTCCTCACAACGC 60.051 61.111 0.00 0.00 39.90 4.84
97 98 1.442184 CCTCGTCGTCCTCACAACG 60.442 63.158 0.00 0.00 41.39 4.10
98 99 1.733399 GCCTCGTCGTCCTCACAAC 60.733 63.158 0.00 0.00 0.00 3.32
99 100 2.649034 GCCTCGTCGTCCTCACAA 59.351 61.111 0.00 0.00 0.00 3.33
100 101 3.733960 CGCCTCGTCGTCCTCACA 61.734 66.667 0.00 0.00 0.00 3.58
101 102 3.384014 CTCGCCTCGTCGTCCTCAC 62.384 68.421 0.00 0.00 0.00 3.51
102 103 3.125573 CTCGCCTCGTCGTCCTCA 61.126 66.667 0.00 0.00 0.00 3.86
103 104 3.126225 ACTCGCCTCGTCGTCCTC 61.126 66.667 0.00 0.00 0.00 3.71
104 105 3.432588 CACTCGCCTCGTCGTCCT 61.433 66.667 0.00 0.00 0.00 3.85
105 106 3.664223 GACACTCGCCTCGTCGTCC 62.664 68.421 0.00 0.00 0.00 4.79
106 107 2.202324 GACACTCGCCTCGTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
107 108 4.086178 CGACACTCGCCTCGTCGT 62.086 66.667 0.00 0.00 45.59 4.34
117 118 2.505118 GCCGAGTCAGCGACACTC 60.505 66.667 10.52 6.98 37.51 3.51
147 148 3.230567 GCGATTTTGGCGCGAACG 61.231 61.111 12.10 6.82 45.27 3.95
153 154 4.536687 GGGCGAGCGATTTTGGCG 62.537 66.667 0.00 0.00 35.00 5.69
154 155 4.193334 GGGGCGAGCGATTTTGGC 62.193 66.667 0.00 0.00 0.00 4.52
155 156 3.876198 CGGGGCGAGCGATTTTGG 61.876 66.667 0.00 0.00 0.00 3.28
156 157 3.876198 CCGGGGCGAGCGATTTTG 61.876 66.667 0.00 0.00 0.00 2.44
187 188 2.897762 TACCCAGGCCAAACCCGAC 61.898 63.158 5.01 0.00 40.58 4.79
188 189 2.529643 TACCCAGGCCAAACCCGA 60.530 61.111 5.01 0.00 40.58 5.14
189 190 2.360726 GTACCCAGGCCAAACCCG 60.361 66.667 5.01 0.00 40.58 5.28
190 191 2.360726 CGTACCCAGGCCAAACCC 60.361 66.667 5.01 0.00 40.58 4.11
191 192 3.060000 GCGTACCCAGGCCAAACC 61.060 66.667 5.01 0.00 39.61 3.27
201 202 4.843719 AAATCGGCCGGCGTACCC 62.844 66.667 27.83 4.71 0.00 3.69
202 203 1.088910 TAAAAATCGGCCGGCGTACC 61.089 55.000 27.83 5.16 0.00 3.34
203 204 0.302589 CTAAAAATCGGCCGGCGTAC 59.697 55.000 27.83 5.60 0.00 3.67
204 205 0.175302 TCTAAAAATCGGCCGGCGTA 59.825 50.000 27.83 11.61 0.00 4.42
205 206 1.078988 TCTAAAAATCGGCCGGCGT 60.079 52.632 27.83 9.24 0.00 5.68
206 207 1.350665 GTCTAAAAATCGGCCGGCG 59.649 57.895 27.83 16.23 0.00 6.46
207 208 1.350665 CGTCTAAAAATCGGCCGGC 59.649 57.895 27.83 21.18 0.00 6.13
208 209 1.350665 GCGTCTAAAAATCGGCCGG 59.649 57.895 27.83 7.21 0.00 6.13
209 210 1.350665 GGCGTCTAAAAATCGGCCG 59.649 57.895 22.12 22.12 42.65 6.13
210 211 1.085501 TCGGCGTCTAAAAATCGGCC 61.086 55.000 6.85 0.00 44.89 6.13
211 212 0.025898 GTCGGCGTCTAAAAATCGGC 59.974 55.000 6.85 0.00 44.41 5.54
212 213 0.296642 CGTCGGCGTCTAAAAATCGG 59.703 55.000 6.85 0.00 0.00 4.18
213 214 0.314021 GCGTCGGCGTCTAAAAATCG 60.314 55.000 12.58 0.94 40.81 3.34
214 215 3.486777 GCGTCGGCGTCTAAAAATC 57.513 52.632 12.58 0.00 40.81 2.17
235 236 5.866207 ACAGACCCTTTCTAGACGATTTTT 58.134 37.500 0.00 0.00 31.12 1.94
236 237 5.485209 ACAGACCCTTTCTAGACGATTTT 57.515 39.130 0.00 0.00 31.12 1.82
237 238 5.238583 CAACAGACCCTTTCTAGACGATTT 58.761 41.667 0.00 0.00 31.12 2.17
238 239 4.322801 CCAACAGACCCTTTCTAGACGATT 60.323 45.833 0.00 0.00 31.12 3.34
239 240 3.195825 CCAACAGACCCTTTCTAGACGAT 59.804 47.826 0.00 0.00 31.12 3.73
240 241 2.561419 CCAACAGACCCTTTCTAGACGA 59.439 50.000 0.00 0.00 31.12 4.20
241 242 2.353803 CCCAACAGACCCTTTCTAGACG 60.354 54.545 0.00 0.00 31.12 4.18
242 243 2.027100 CCCCAACAGACCCTTTCTAGAC 60.027 54.545 0.00 0.00 31.12 2.59
243 244 2.266279 CCCCAACAGACCCTTTCTAGA 58.734 52.381 0.00 0.00 31.12 2.43
244 245 1.282157 CCCCCAACAGACCCTTTCTAG 59.718 57.143 0.00 0.00 31.12 2.43
245 246 1.368374 CCCCCAACAGACCCTTTCTA 58.632 55.000 0.00 0.00 31.12 2.10
246 247 2.081585 GCCCCCAACAGACCCTTTCT 62.082 60.000 0.00 0.00 33.33 2.52
247 248 1.606601 GCCCCCAACAGACCCTTTC 60.607 63.158 0.00 0.00 0.00 2.62
248 249 2.526110 GCCCCCAACAGACCCTTT 59.474 61.111 0.00 0.00 0.00 3.11
249 250 3.966543 CGCCCCCAACAGACCCTT 61.967 66.667 0.00 0.00 0.00 3.95
274 275 9.199964 GAAGGAACCAGACTTCTTAGAGCATCT 62.200 44.444 0.00 0.00 43.35 2.90
275 276 4.161377 AGGAACCAGACTTCTTAGAGCATC 59.839 45.833 0.00 0.00 0.00 3.91
276 277 4.100373 AGGAACCAGACTTCTTAGAGCAT 58.900 43.478 0.00 0.00 0.00 3.79
277 278 3.511477 AGGAACCAGACTTCTTAGAGCA 58.489 45.455 0.00 0.00 0.00 4.26
278 279 4.500127 GAAGGAACCAGACTTCTTAGAGC 58.500 47.826 0.00 0.00 39.88 4.09
279 280 4.739195 CGAAGGAACCAGACTTCTTAGAG 58.261 47.826 0.00 0.00 40.63 2.43
280 281 4.785511 CGAAGGAACCAGACTTCTTAGA 57.214 45.455 0.00 0.00 40.63 2.10
297 298 1.078143 CTCAAGAAGGGCCCCGAAG 60.078 63.158 21.43 5.19 0.00 3.79
298 299 1.423794 AACTCAAGAAGGGCCCCGAA 61.424 55.000 21.43 0.00 0.00 4.30
299 300 1.423794 AAACTCAAGAAGGGCCCCGA 61.424 55.000 21.43 6.73 0.00 5.14
300 301 0.326927 TAAACTCAAGAAGGGCCCCG 59.673 55.000 21.43 1.71 0.00 5.73
301 302 2.597578 TTAAACTCAAGAAGGGCCCC 57.402 50.000 21.43 3.37 0.00 5.80
302 303 4.587262 TCTTTTTAAACTCAAGAAGGGCCC 59.413 41.667 16.46 16.46 0.00 5.80
303 304 5.784578 TCTTTTTAAACTCAAGAAGGGCC 57.215 39.130 0.00 0.00 0.00 5.80
304 305 7.979537 TCTTTTCTTTTTAAACTCAAGAAGGGC 59.020 33.333 11.46 0.00 37.72 5.19
305 306 9.869757 TTCTTTTCTTTTTAAACTCAAGAAGGG 57.130 29.630 11.46 9.43 37.72 3.95
334 335 5.359576 TCAGTTAGGCACATGTTGAGTTTTT 59.640 36.000 0.00 0.00 0.00 1.94
335 336 4.887071 TCAGTTAGGCACATGTTGAGTTTT 59.113 37.500 0.00 0.00 0.00 2.43
336 337 4.275936 GTCAGTTAGGCACATGTTGAGTTT 59.724 41.667 0.00 0.00 0.00 2.66
337 338 3.815401 GTCAGTTAGGCACATGTTGAGTT 59.185 43.478 0.00 0.00 0.00 3.01
338 339 3.181455 TGTCAGTTAGGCACATGTTGAGT 60.181 43.478 0.00 0.00 0.00 3.41
339 340 3.402110 TGTCAGTTAGGCACATGTTGAG 58.598 45.455 0.00 0.00 0.00 3.02
340 341 3.483808 TGTCAGTTAGGCACATGTTGA 57.516 42.857 0.00 0.00 0.00 3.18
348 349 3.326588 ACTTGTATGGTGTCAGTTAGGCA 59.673 43.478 0.00 0.00 0.00 4.75
349 350 3.933332 GACTTGTATGGTGTCAGTTAGGC 59.067 47.826 0.00 0.00 0.00 3.93
350 351 5.147330 TGACTTGTATGGTGTCAGTTAGG 57.853 43.478 0.00 0.00 36.03 2.69
351 352 6.481976 TGTTTGACTTGTATGGTGTCAGTTAG 59.518 38.462 0.00 0.00 41.01 2.34
352 353 6.350103 TGTTTGACTTGTATGGTGTCAGTTA 58.650 36.000 0.00 0.00 41.01 2.24
353 354 5.189928 TGTTTGACTTGTATGGTGTCAGTT 58.810 37.500 0.00 0.00 41.01 3.16
354 355 4.776349 TGTTTGACTTGTATGGTGTCAGT 58.224 39.130 0.00 0.00 41.01 3.41
355 356 5.335113 CCATGTTTGACTTGTATGGTGTCAG 60.335 44.000 0.00 0.00 41.01 3.51
356 357 4.518590 CCATGTTTGACTTGTATGGTGTCA 59.481 41.667 0.00 0.00 38.71 3.58
357 358 5.046910 CCATGTTTGACTTGTATGGTGTC 57.953 43.478 0.00 0.00 34.88 3.67
387 388 8.607459 CGAATTCTGAAAATACAGTGAAGCTAT 58.393 33.333 3.52 0.00 38.79 2.97
388 389 7.817478 TCGAATTCTGAAAATACAGTGAAGCTA 59.183 33.333 3.52 0.00 38.79 3.32
389 390 6.650807 TCGAATTCTGAAAATACAGTGAAGCT 59.349 34.615 3.52 0.00 38.79 3.74
390 391 6.831769 TCGAATTCTGAAAATACAGTGAAGC 58.168 36.000 3.52 0.00 38.79 3.86
391 392 9.831737 AATTCGAATTCTGAAAATACAGTGAAG 57.168 29.630 17.60 0.00 38.79 3.02
392 393 9.825972 GAATTCGAATTCTGAAAATACAGTGAA 57.174 29.630 33.51 2.59 41.18 3.18
393 394 8.450964 GGAATTCGAATTCTGAAAATACAGTGA 58.549 33.333 36.73 0.00 43.33 3.41
394 395 8.236586 TGGAATTCGAATTCTGAAAATACAGTG 58.763 33.333 36.73 0.00 43.33 3.66
395 396 8.335532 TGGAATTCGAATTCTGAAAATACAGT 57.664 30.769 36.73 9.45 43.33 3.55
396 397 8.668353 TCTGGAATTCGAATTCTGAAAATACAG 58.332 33.333 36.73 31.07 43.33 2.74
397 398 8.560355 TCTGGAATTCGAATTCTGAAAATACA 57.440 30.769 36.73 25.98 43.33 2.29
413 414 4.083484 ACGGTTTGAACGAATCTGGAATTC 60.083 41.667 0.00 0.00 34.93 2.17
414 415 3.818773 ACGGTTTGAACGAATCTGGAATT 59.181 39.130 0.00 0.00 34.93 2.17
415 416 3.188460 CACGGTTTGAACGAATCTGGAAT 59.812 43.478 0.00 0.00 34.93 3.01
416 417 2.546368 CACGGTTTGAACGAATCTGGAA 59.454 45.455 0.00 0.00 34.93 3.53
417 418 2.139917 CACGGTTTGAACGAATCTGGA 58.860 47.619 0.00 0.00 34.93 3.86
418 419 1.399727 GCACGGTTTGAACGAATCTGG 60.400 52.381 0.00 0.00 34.93 3.86
419 420 1.531149 AGCACGGTTTGAACGAATCTG 59.469 47.619 0.00 0.00 34.93 2.90
420 421 1.878953 AGCACGGTTTGAACGAATCT 58.121 45.000 0.00 0.00 34.93 2.40
421 422 2.681152 AAGCACGGTTTGAACGAATC 57.319 45.000 0.00 0.00 34.93 2.52
422 423 3.312973 TGTTAAGCACGGTTTGAACGAAT 59.687 39.130 0.00 0.00 34.93 3.34
423 424 2.676839 TGTTAAGCACGGTTTGAACGAA 59.323 40.909 0.00 0.00 34.93 3.85
424 425 2.277969 TGTTAAGCACGGTTTGAACGA 58.722 42.857 0.00 0.00 34.93 3.85
425 426 2.741122 TGTTAAGCACGGTTTGAACG 57.259 45.000 0.00 0.00 37.36 3.95
426 427 4.217754 TCATGTTAAGCACGGTTTGAAC 57.782 40.909 0.00 0.00 0.00 3.18
427 428 4.759693 AGATCATGTTAAGCACGGTTTGAA 59.240 37.500 0.00 0.00 0.00 2.69
428 429 4.323417 AGATCATGTTAAGCACGGTTTGA 58.677 39.130 0.00 0.00 0.00 2.69
429 430 4.685169 AGATCATGTTAAGCACGGTTTG 57.315 40.909 0.00 0.00 0.00 2.93
430 431 4.518970 ACAAGATCATGTTAAGCACGGTTT 59.481 37.500 0.00 0.00 0.00 3.27
431 432 4.072131 ACAAGATCATGTTAAGCACGGTT 58.928 39.130 0.00 0.00 0.00 4.44
432 433 3.674997 ACAAGATCATGTTAAGCACGGT 58.325 40.909 0.00 0.00 0.00 4.83
433 434 4.685169 AACAAGATCATGTTAAGCACGG 57.315 40.909 14.36 0.00 41.56 4.94
434 435 6.142139 TCAAAACAAGATCATGTTAAGCACG 58.858 36.000 16.09 3.12 42.49 5.34
435 436 7.862372 TCTTCAAAACAAGATCATGTTAAGCAC 59.138 33.333 16.09 0.00 42.49 4.40
436 437 7.939782 TCTTCAAAACAAGATCATGTTAAGCA 58.060 30.769 16.09 2.90 42.49 3.91
437 438 8.976986 ATCTTCAAAACAAGATCATGTTAAGC 57.023 30.769 16.09 0.00 42.49 3.09
447 448 4.010349 GACGGGGATCTTCAAAACAAGAT 58.990 43.478 0.00 0.00 44.37 2.40
448 449 3.181449 TGACGGGGATCTTCAAAACAAGA 60.181 43.478 0.00 0.00 36.82 3.02
449 450 3.146066 TGACGGGGATCTTCAAAACAAG 58.854 45.455 0.00 0.00 0.00 3.16
450 451 3.146066 CTGACGGGGATCTTCAAAACAA 58.854 45.455 0.00 0.00 0.00 2.83
451 452 2.778299 CTGACGGGGATCTTCAAAACA 58.222 47.619 0.00 0.00 0.00 2.83
452 453 1.468914 GCTGACGGGGATCTTCAAAAC 59.531 52.381 0.00 0.00 0.00 2.43
453 454 1.613255 GGCTGACGGGGATCTTCAAAA 60.613 52.381 0.00 0.00 0.00 2.44
454 455 0.035439 GGCTGACGGGGATCTTCAAA 60.035 55.000 0.00 0.00 0.00 2.69
455 456 0.909610 AGGCTGACGGGGATCTTCAA 60.910 55.000 0.00 0.00 0.00 2.69
456 457 0.032515 TAGGCTGACGGGGATCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
457 458 1.120530 TTAGGCTGACGGGGATCTTC 58.879 55.000 0.00 0.00 0.00 2.87
458 459 1.580059 TTTAGGCTGACGGGGATCTT 58.420 50.000 0.00 0.00 0.00 2.40
459 460 1.694696 GATTTAGGCTGACGGGGATCT 59.305 52.381 0.00 0.00 0.00 2.75
460 461 1.605712 CGATTTAGGCTGACGGGGATC 60.606 57.143 0.00 0.00 0.00 3.36
461 462 0.393077 CGATTTAGGCTGACGGGGAT 59.607 55.000 0.00 0.00 0.00 3.85
462 463 1.682451 CCGATTTAGGCTGACGGGGA 61.682 60.000 0.00 0.00 39.92 4.81
463 464 1.227556 CCGATTTAGGCTGACGGGG 60.228 63.158 0.00 0.00 39.92 5.73
464 465 0.393077 ATCCGATTTAGGCTGACGGG 59.607 55.000 17.84 5.66 43.14 5.28
465 466 1.068588 TGATCCGATTTAGGCTGACGG 59.931 52.381 14.03 14.03 44.09 4.79
466 467 2.509052 TGATCCGATTTAGGCTGACG 57.491 50.000 0.00 0.00 0.00 4.35
467 468 6.650807 TGATTTATGATCCGATTTAGGCTGAC 59.349 38.462 0.00 0.00 0.00 3.51
468 469 6.768483 TGATTTATGATCCGATTTAGGCTGA 58.232 36.000 0.00 0.00 0.00 4.26
469 470 6.875726 TCTGATTTATGATCCGATTTAGGCTG 59.124 38.462 0.00 0.00 0.00 4.85
470 471 6.876257 GTCTGATTTATGATCCGATTTAGGCT 59.124 38.462 0.00 0.00 0.00 4.58
471 472 6.183360 CGTCTGATTTATGATCCGATTTAGGC 60.183 42.308 0.00 0.00 0.00 3.93
472 473 6.868864 ACGTCTGATTTATGATCCGATTTAGG 59.131 38.462 0.00 0.00 0.00 2.69
473 474 7.875316 ACGTCTGATTTATGATCCGATTTAG 57.125 36.000 0.00 0.00 0.00 1.85
474 475 9.406828 CTTACGTCTGATTTATGATCCGATTTA 57.593 33.333 0.00 0.00 0.00 1.40
475 476 7.385205 CCTTACGTCTGATTTATGATCCGATTT 59.615 37.037 0.00 0.00 0.00 2.17
476 477 6.868864 CCTTACGTCTGATTTATGATCCGATT 59.131 38.462 0.00 0.00 0.00 3.34
477 478 6.015350 ACCTTACGTCTGATTTATGATCCGAT 60.015 38.462 0.00 0.00 0.00 4.18
478 479 5.301045 ACCTTACGTCTGATTTATGATCCGA 59.699 40.000 0.00 0.00 0.00 4.55
479 480 5.529791 ACCTTACGTCTGATTTATGATCCG 58.470 41.667 0.00 0.00 0.00 4.18
480 481 6.984474 TGAACCTTACGTCTGATTTATGATCC 59.016 38.462 0.00 0.00 0.00 3.36
481 482 8.420374 TTGAACCTTACGTCTGATTTATGATC 57.580 34.615 0.00 0.00 0.00 2.92
482 483 8.786826 TTTGAACCTTACGTCTGATTTATGAT 57.213 30.769 0.00 0.00 0.00 2.45
483 484 8.610248 TTTTGAACCTTACGTCTGATTTATGA 57.390 30.769 0.00 0.00 0.00 2.15
484 485 8.717821 TCTTTTGAACCTTACGTCTGATTTATG 58.282 33.333 0.00 0.00 0.00 1.90
485 486 8.842358 TCTTTTGAACCTTACGTCTGATTTAT 57.158 30.769 0.00 0.00 0.00 1.40
486 487 8.842358 ATCTTTTGAACCTTACGTCTGATTTA 57.158 30.769 0.00 0.00 0.00 1.40
487 488 7.745620 ATCTTTTGAACCTTACGTCTGATTT 57.254 32.000 0.00 0.00 0.00 2.17
488 489 8.842358 TTATCTTTTGAACCTTACGTCTGATT 57.158 30.769 0.00 0.00 0.00 2.57
489 490 8.842358 TTTATCTTTTGAACCTTACGTCTGAT 57.158 30.769 0.00 0.00 0.00 2.90
490 491 8.665643 TTTTATCTTTTGAACCTTACGTCTGA 57.334 30.769 0.00 0.00 0.00 3.27
518 519 5.356882 TTCTTGATTCCAACGCTTTGTAG 57.643 39.130 1.95 0.00 0.00 2.74
539 543 2.311542 TGATGCCTCCATAGTTGGGTTT 59.688 45.455 0.00 0.00 43.81 3.27
555 559 1.081242 CAACTGCCGTTGGTGATGC 60.081 57.895 12.73 0.00 45.28 3.91
576 580 2.651361 CGTGGTCGAGCTGGAGTT 59.349 61.111 16.64 0.00 39.71 3.01
577 581 4.057428 GCGTGGTCGAGCTGGAGT 62.057 66.667 16.64 0.00 39.71 3.85
632 637 6.415573 CCTACGCGTTTTGTGTATTTTTCTTT 59.584 34.615 20.78 0.00 42.39 2.52
635 640 5.442402 TCCTACGCGTTTTGTGTATTTTTC 58.558 37.500 20.78 0.00 42.39 2.29
665 670 2.378038 CCAACCAGAGAGAGAGAGAGG 58.622 57.143 0.00 0.00 0.00 3.69
711 722 2.441532 GGCAGCAGCATCCATGGT 60.442 61.111 12.58 0.00 44.61 3.55
722 733 4.383861 CTCTCAGCCGTGGCAGCA 62.384 66.667 14.29 0.00 44.88 4.41
740 751 2.758979 GGTTGTTATCCGTCTCCTCTCA 59.241 50.000 0.00 0.00 0.00 3.27
799 810 1.536943 GGAGACCACGAAGACCTGCT 61.537 60.000 0.00 0.00 0.00 4.24
802 813 0.406361 AGAGGAGACCACGAAGACCT 59.594 55.000 0.00 0.00 0.00 3.85
803 814 0.528470 CAGAGGAGACCACGAAGACC 59.472 60.000 0.00 0.00 0.00 3.85
804 815 0.109039 GCAGAGGAGACCACGAAGAC 60.109 60.000 0.00 0.00 0.00 3.01
810 832 0.901124 ATGTGAGCAGAGGAGACCAC 59.099 55.000 0.00 0.00 0.00 4.16
844 866 2.284699 AGGGGTGGGTCTTCGGAG 60.285 66.667 0.00 0.00 0.00 4.63
936 980 3.412408 GGGAGAGGTGGCCTTCCC 61.412 72.222 3.32 9.10 40.75 3.97
938 982 2.371259 GGAGGGAGAGGTGGCCTTC 61.371 68.421 3.32 0.00 31.76 3.46
939 983 2.285743 GGAGGGAGAGGTGGCCTT 60.286 66.667 3.32 0.00 31.76 4.35
941 985 4.741239 TGGGAGGGAGAGGTGGCC 62.741 72.222 0.00 0.00 0.00 5.36
942 986 3.086600 CTGGGAGGGAGAGGTGGC 61.087 72.222 0.00 0.00 0.00 5.01
943 987 3.086600 GCTGGGAGGGAGAGGTGG 61.087 72.222 0.00 0.00 0.00 4.61
944 988 3.086600 GGCTGGGAGGGAGAGGTG 61.087 72.222 0.00 0.00 0.00 4.00
945 989 3.288381 AGGCTGGGAGGGAGAGGT 61.288 66.667 0.00 0.00 0.00 3.85
946 990 2.445654 GAGGCTGGGAGGGAGAGG 60.446 72.222 0.00 0.00 0.00 3.69
947 991 2.445654 GGAGGCTGGGAGGGAGAG 60.446 72.222 0.00 0.00 0.00 3.20
948 992 3.284251 TGGAGGCTGGGAGGGAGA 61.284 66.667 0.00 0.00 0.00 3.71
1090 1153 2.126424 GACGACCAGGCAGACGAC 60.126 66.667 6.44 0.00 0.00 4.34
1128 1191 2.841988 AGGATGAGGAGGGCGAGC 60.842 66.667 0.00 0.00 0.00 5.03
1715 2672 4.531854 TGAGACCAAACCAAATCAAGTGA 58.468 39.130 0.00 0.00 0.00 3.41
1734 2701 5.121768 ACCGATTTTTACAGACGGAAATGAG 59.878 40.000 0.00 0.00 45.31 2.90
1770 2737 8.832521 CCACTACTACTAGTACTGATGAAGAAG 58.167 40.741 5.39 0.00 31.46 2.85
1787 2758 5.011090 TGATGCATGTTCTCCACTACTAC 57.989 43.478 2.46 0.00 0.00 2.73
1803 2778 5.047092 TGACACTAGAAGAGACATTGATGCA 60.047 40.000 0.00 0.00 0.00 3.96
1834 2809 3.418047 ACCAACTAGGGGAAATTCGTTG 58.582 45.455 9.47 4.46 43.89 4.10
1899 2887 7.771826 TGAAAGATGAATAGAGATGTTGCATGA 59.228 33.333 0.00 0.00 0.00 3.07
1902 2890 6.880529 TGTGAAAGATGAATAGAGATGTTGCA 59.119 34.615 0.00 0.00 0.00 4.08
2021 3017 6.642540 GTGCCGAATTTTTGAAATTTCTCTCT 59.357 34.615 18.64 0.00 0.00 3.10
2023 3019 6.279882 TGTGCCGAATTTTTGAAATTTCTCT 58.720 32.000 18.64 0.00 0.00 3.10
2027 3023 5.048852 CCCATGTGCCGAATTTTTGAAATTT 60.049 36.000 0.00 0.00 0.00 1.82
2033 3029 1.077915 GCCCATGTGCCGAATTTTTG 58.922 50.000 0.00 0.00 0.00 2.44
2035 3031 1.596408 GGCCCATGTGCCGAATTTT 59.404 52.632 2.56 0.00 42.54 1.82
2065 3061 3.004315 TCCGCTTTTAGCAAAGAACAAGG 59.996 43.478 0.90 0.00 42.58 3.61
2069 3065 9.516314 AAATATATTCCGCTTTTAGCAAAGAAC 57.484 29.630 0.00 0.00 42.58 3.01
2241 3397 1.618343 CCCAAGTTTCCCGCATCTTTT 59.382 47.619 0.00 0.00 0.00 2.27
2242 3398 1.203001 TCCCAAGTTTCCCGCATCTTT 60.203 47.619 0.00 0.00 0.00 2.52
2243 3399 0.404040 TCCCAAGTTTCCCGCATCTT 59.596 50.000 0.00 0.00 0.00 2.40
2247 3403 1.710816 ATTTTCCCAAGTTTCCCGCA 58.289 45.000 0.00 0.00 0.00 5.69
2248 3404 2.224185 ACAATTTTCCCAAGTTTCCCGC 60.224 45.455 0.00 0.00 0.00 6.13
2256 3422 6.920758 TGTGTCGAATTTACAATTTTCCCAAG 59.079 34.615 0.00 0.00 0.00 3.61
2257 3423 6.806751 TGTGTCGAATTTACAATTTTCCCAA 58.193 32.000 0.00 0.00 0.00 4.12
2277 3443 0.244450 CATTTCGCAAGCCCATGTGT 59.756 50.000 0.00 0.00 32.67 3.72
2287 3453 5.401550 CAAAGAATAAGAGCCATTTCGCAA 58.598 37.500 0.00 0.00 0.00 4.85
2288 3454 4.675146 GCAAAGAATAAGAGCCATTTCGCA 60.675 41.667 0.00 0.00 0.00 5.10
2338 3508 2.907910 AATGTCTGAAGCGAATGTGC 57.092 45.000 0.00 0.00 0.00 4.57
2354 3524 2.091541 ACGTGGTGGCAAATCCTAATG 58.908 47.619 0.00 0.00 35.26 1.90
2358 3528 0.893727 GGAACGTGGTGGCAAATCCT 60.894 55.000 0.00 0.00 35.26 3.24
2428 3705 5.822132 AAATGGTTCAAATTGGTCATCCA 57.178 34.783 0.00 0.00 42.66 3.41
2429 3706 8.791327 ATTAAAATGGTTCAAATTGGTCATCC 57.209 30.769 0.00 0.00 0.00 3.51
2437 3714 8.868916 CGAAATCGGATTAAAATGGTTCAAATT 58.131 29.630 3.22 0.00 35.37 1.82
2463 3740 4.148825 AGCGAGCCCGACATGTCC 62.149 66.667 20.03 6.38 38.22 4.02
2492 3769 6.892658 ACATTGTTAATTCTTAGTGCCACA 57.107 33.333 0.00 0.00 0.00 4.17
2513 3790 5.127845 TCTGGCTTAATGGTCAAAACAAACA 59.872 36.000 0.00 0.00 0.00 2.83
2533 3810 0.395724 GCCCTAAACCCCACATCTGG 60.396 60.000 0.00 0.00 37.29 3.86
2610 3893 5.048846 AGTTGAAGGCTTAGAAGGTTGAA 57.951 39.130 0.00 0.00 0.00 2.69
2614 3897 2.306219 GGGAGTTGAAGGCTTAGAAGGT 59.694 50.000 0.00 0.00 0.00 3.50
2621 3904 0.402121 GTGGAGGGAGTTGAAGGCTT 59.598 55.000 0.00 0.00 0.00 4.35
2652 3935 2.868583 CACCATGTCGGAGATGTTCATC 59.131 50.000 13.35 4.80 40.67 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.