Multiple sequence alignment - TraesCS5B01G516300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G516300 chr5B 100.000 3634 0 0 1 3634 680600439 680604072 0.000000e+00 6711
1 TraesCS5B01G516300 chr5B 97.701 87 2 0 245 331 547063062 547062976 2.260000e-32 150
2 TraesCS5B01G516300 chr5B 94.681 94 4 1 243 336 601395329 601395421 1.050000e-30 145
3 TraesCS5B01G516300 chr4A 93.967 3000 113 28 670 3632 629479313 629476345 0.000000e+00 4475
4 TraesCS5B01G516300 chr5D 91.748 2242 94 37 521 2686 539022001 539024227 0.000000e+00 3031
5 TraesCS5B01G516300 chr5D 92.389 946 52 9 2692 3634 539024256 539025184 0.000000e+00 1330
6 TraesCS5B01G516300 chr2D 92.460 1618 82 16 1050 2639 68584070 68582465 0.000000e+00 2276
7 TraesCS5B01G516300 chr2D 92.398 1618 83 16 1050 2639 68621221 68619616 0.000000e+00 2270
8 TraesCS5B01G516300 chr2D 92.260 1615 94 14 1050 2639 68561912 68560304 0.000000e+00 2261
9 TraesCS5B01G516300 chr2D 98.824 85 1 0 247 331 272263170 272263086 6.280000e-33 152
10 TraesCS5B01G516300 chr3D 98.824 85 1 0 247 331 435646743 435646827 6.280000e-33 152
11 TraesCS5B01G516300 chr1B 98.824 85 1 0 247 331 661509419 661509335 6.280000e-33 152
12 TraesCS5B01G516300 chr1B 97.701 87 2 0 245 331 624663027 624662941 2.260000e-32 150
13 TraesCS5B01G516300 chr3B 96.667 90 3 0 242 331 214547626 214547537 2.260000e-32 150
14 TraesCS5B01G516300 chr3B 92.157 102 6 2 230 331 12156846 12156945 3.780000e-30 143
15 TraesCS5B01G516300 chr3B 93.671 79 4 1 331 409 15806565 15806642 2.290000e-22 117
16 TraesCS5B01G516300 chr3B 91.358 81 6 1 331 410 147561025 147561105 3.840000e-20 110
17 TraesCS5B01G516300 chr2B 97.701 87 2 0 245 331 612680050 612680136 2.260000e-32 150
18 TraesCS5B01G516300 chr2B 93.421 76 3 2 330 404 612680098 612680172 1.070000e-20 111
19 TraesCS5B01G516300 chr2B 92.105 76 6 0 2132 2207 400351689 400351614 1.380000e-19 108
20 TraesCS5B01G516300 chr7B 100.000 67 0 0 331 397 186814094 186814028 1.370000e-24 124
21 TraesCS5B01G516300 chr7A 90.526 95 8 1 247 341 439804430 439804337 1.370000e-24 124
22 TraesCS5B01G516300 chr3A 90.526 95 6 3 227 320 399421531 399421623 4.930000e-24 122
23 TraesCS5B01G516300 chr6D 100.000 64 0 0 331 394 70009841 70009904 6.370000e-23 119
24 TraesCS5B01G516300 chr7D 97.101 69 2 0 330 398 21093667 21093599 2.290000e-22 117
25 TraesCS5B01G516300 chr1A 89.474 95 7 3 227 320 537745687 537745595 2.290000e-22 117
26 TraesCS5B01G516300 chrUn 87.379 103 8 5 331 433 27987460 27987557 2.970000e-21 113
27 TraesCS5B01G516300 chr6B 93.506 77 4 1 331 407 548122267 548122342 2.970000e-21 113
28 TraesCS5B01G516300 chr6B 97.059 68 1 1 331 397 595060980 595061047 2.970000e-21 113
29 TraesCS5B01G516300 chr2A 93.421 76 5 0 2132 2207 440069815 440069740 2.970000e-21 113
30 TraesCS5B01G516300 chr2A 88.421 95 8 3 227 320 139617109 139617201 1.070000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G516300 chr5B 680600439 680604072 3633 False 6711.0 6711 100.0000 1 3634 1 chr5B.!!$F2 3633
1 TraesCS5B01G516300 chr4A 629476345 629479313 2968 True 4475.0 4475 93.9670 670 3632 1 chr4A.!!$R1 2962
2 TraesCS5B01G516300 chr5D 539022001 539025184 3183 False 2180.5 3031 92.0685 521 3634 2 chr5D.!!$F1 3113
3 TraesCS5B01G516300 chr2D 68582465 68584070 1605 True 2276.0 2276 92.4600 1050 2639 1 chr2D.!!$R2 1589
4 TraesCS5B01G516300 chr2D 68619616 68621221 1605 True 2270.0 2270 92.3980 1050 2639 1 chr2D.!!$R3 1589
5 TraesCS5B01G516300 chr2D 68560304 68561912 1608 True 2261.0 2261 92.2600 1050 2639 1 chr2D.!!$R1 1589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.034896 TTTGGAGGTTGGAGACGAGC 59.965 55.0 0.00 0.0 42.80 5.03 F
155 156 0.100682 GACGAGCGCTGGATTGTCTA 59.899 55.0 26.95 0.0 39.40 2.59 F
330 331 0.175989 TACATCCATACGTGCGGCAA 59.824 50.0 3.23 0.0 0.00 4.52 F
513 514 0.184933 CCCCCAACCAGTCTGTTCAA 59.815 55.0 0.00 0.0 0.00 2.69 F
1029 1060 0.250234 TCTTTGGATCTCCTGCGGTG 59.750 55.0 0.00 0.0 36.82 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1972 1.739562 CTTGACGAGCCAGGTCAGC 60.740 63.158 0.00 0.0 44.47 4.26 R
2178 2227 1.954146 CACCACGTCCAGGTTCACG 60.954 63.158 0.00 0.0 37.23 4.35 R
2339 2400 1.644509 TCAGCGTCCCCTGCATATAT 58.355 50.000 0.00 0.0 32.87 0.86 R
2525 2597 1.311859 TCCAGCTGCACAGAAAACAG 58.688 50.000 8.66 0.0 34.48 3.16 R
2735 2854 1.205655 TGACAGCATCAGTAGAGTGCC 59.794 52.381 0.00 0.0 39.62 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.361253 TTGACAAGTGCCTCGCTC 57.639 55.556 0.00 0.00 0.00 5.03
18 19 1.445518 TTGACAAGTGCCTCGCTCA 59.554 52.632 0.00 0.00 0.00 4.26
19 20 0.880278 TTGACAAGTGCCTCGCTCAC 60.880 55.000 0.00 0.00 34.80 3.51
20 21 1.300931 GACAAGTGCCTCGCTCACA 60.301 57.895 4.78 0.00 36.93 3.58
21 22 0.880278 GACAAGTGCCTCGCTCACAA 60.880 55.000 4.78 0.00 36.93 3.33
22 23 1.160329 ACAAGTGCCTCGCTCACAAC 61.160 55.000 4.78 0.00 36.93 3.32
23 24 1.146041 AAGTGCCTCGCTCACAACA 59.854 52.632 4.78 0.00 36.93 3.33
24 25 0.882042 AAGTGCCTCGCTCACAACAG 60.882 55.000 4.78 0.00 36.93 3.16
25 26 1.300931 GTGCCTCGCTCACAACAGA 60.301 57.895 0.00 0.00 34.73 3.41
26 27 1.300931 TGCCTCGCTCACAACAGAC 60.301 57.895 0.00 0.00 0.00 3.51
27 28 1.300931 GCCTCGCTCACAACAGACA 60.301 57.895 0.00 0.00 0.00 3.41
28 29 0.671781 GCCTCGCTCACAACAGACAT 60.672 55.000 0.00 0.00 0.00 3.06
29 30 1.800805 CCTCGCTCACAACAGACATT 58.199 50.000 0.00 0.00 0.00 2.71
30 31 2.146342 CCTCGCTCACAACAGACATTT 58.854 47.619 0.00 0.00 0.00 2.32
31 32 2.549754 CCTCGCTCACAACAGACATTTT 59.450 45.455 0.00 0.00 0.00 1.82
32 33 3.364366 CCTCGCTCACAACAGACATTTTC 60.364 47.826 0.00 0.00 0.00 2.29
33 34 3.202097 TCGCTCACAACAGACATTTTCA 58.798 40.909 0.00 0.00 0.00 2.69
34 35 3.814842 TCGCTCACAACAGACATTTTCAT 59.185 39.130 0.00 0.00 0.00 2.57
35 36 4.083855 TCGCTCACAACAGACATTTTCATC 60.084 41.667 0.00 0.00 0.00 2.92
36 37 4.083643 CGCTCACAACAGACATTTTCATCT 60.084 41.667 0.00 0.00 0.00 2.90
37 38 5.561532 CGCTCACAACAGACATTTTCATCTT 60.562 40.000 0.00 0.00 0.00 2.40
38 39 6.211515 GCTCACAACAGACATTTTCATCTTT 58.788 36.000 0.00 0.00 0.00 2.52
39 40 6.698766 GCTCACAACAGACATTTTCATCTTTT 59.301 34.615 0.00 0.00 0.00 2.27
40 41 7.223387 GCTCACAACAGACATTTTCATCTTTTT 59.777 33.333 0.00 0.00 0.00 1.94
41 42 9.734620 CTCACAACAGACATTTTCATCTTTTTA 57.265 29.630 0.00 0.00 0.00 1.52
45 46 9.853921 CAACAGACATTTTCATCTTTTTAAAGC 57.146 29.630 0.00 0.00 35.99 3.51
46 47 8.593492 ACAGACATTTTCATCTTTTTAAAGCC 57.407 30.769 0.00 0.00 35.99 4.35
47 48 8.424133 ACAGACATTTTCATCTTTTTAAAGCCT 58.576 29.630 0.00 0.00 35.99 4.58
48 49 8.919661 CAGACATTTTCATCTTTTTAAAGCCTC 58.080 33.333 0.00 0.00 35.99 4.70
49 50 8.864087 AGACATTTTCATCTTTTTAAAGCCTCT 58.136 29.630 0.00 0.00 35.99 3.69
50 51 8.822652 ACATTTTCATCTTTTTAAAGCCTCTG 57.177 30.769 0.00 0.00 35.99 3.35
51 52 8.424133 ACATTTTCATCTTTTTAAAGCCTCTGT 58.576 29.630 0.00 0.00 35.99 3.41
52 53 8.706035 CATTTTCATCTTTTTAAAGCCTCTGTG 58.294 33.333 0.00 0.00 35.99 3.66
53 54 6.959639 TTCATCTTTTTAAAGCCTCTGTGT 57.040 33.333 0.00 0.00 35.99 3.72
54 55 6.560253 TCATCTTTTTAAAGCCTCTGTGTC 57.440 37.500 0.00 0.00 35.99 3.67
55 56 6.061441 TCATCTTTTTAAAGCCTCTGTGTCA 58.939 36.000 0.00 0.00 35.99 3.58
56 57 6.545666 TCATCTTTTTAAAGCCTCTGTGTCAA 59.454 34.615 0.00 0.00 35.99 3.18
57 58 6.959639 TCTTTTTAAAGCCTCTGTGTCAAT 57.040 33.333 0.00 0.00 35.99 2.57
58 59 6.738114 TCTTTTTAAAGCCTCTGTGTCAATG 58.262 36.000 0.00 0.00 35.99 2.82
59 60 5.452078 TTTTAAAGCCTCTGTGTCAATGG 57.548 39.130 0.00 0.00 0.00 3.16
60 61 2.664402 AAAGCCTCTGTGTCAATGGT 57.336 45.000 0.00 0.00 0.00 3.55
61 62 1.901591 AAGCCTCTGTGTCAATGGTG 58.098 50.000 0.00 0.00 0.00 4.17
62 63 0.607489 AGCCTCTGTGTCAATGGTGC 60.607 55.000 0.00 0.00 0.00 5.01
63 64 0.607489 GCCTCTGTGTCAATGGTGCT 60.607 55.000 0.00 0.00 0.00 4.40
64 65 1.162698 CCTCTGTGTCAATGGTGCTG 58.837 55.000 0.00 0.00 0.00 4.41
65 66 1.162698 CTCTGTGTCAATGGTGCTGG 58.837 55.000 0.00 0.00 0.00 4.85
66 67 0.473755 TCTGTGTCAATGGTGCTGGT 59.526 50.000 0.00 0.00 0.00 4.00
67 68 0.877071 CTGTGTCAATGGTGCTGGTC 59.123 55.000 0.00 0.00 0.00 4.02
68 69 0.473755 TGTGTCAATGGTGCTGGTCT 59.526 50.000 0.00 0.00 0.00 3.85
69 70 0.877071 GTGTCAATGGTGCTGGTCTG 59.123 55.000 0.00 0.00 0.00 3.51
70 71 0.250858 TGTCAATGGTGCTGGTCTGG 60.251 55.000 0.00 0.00 0.00 3.86
71 72 0.962356 GTCAATGGTGCTGGTCTGGG 60.962 60.000 0.00 0.00 0.00 4.45
72 73 2.036256 AATGGTGCTGGTCTGGGC 59.964 61.111 0.00 0.00 0.00 5.36
73 74 2.541907 AATGGTGCTGGTCTGGGCT 61.542 57.895 0.00 0.00 0.00 5.19
74 75 1.207488 AATGGTGCTGGTCTGGGCTA 61.207 55.000 0.00 0.00 0.00 3.93
75 76 1.630126 ATGGTGCTGGTCTGGGCTAG 61.630 60.000 0.00 0.00 0.00 3.42
76 77 2.586792 GTGCTGGTCTGGGCTAGG 59.413 66.667 0.00 0.00 0.00 3.02
77 78 2.688666 TGCTGGTCTGGGCTAGGG 60.689 66.667 0.00 0.00 0.00 3.53
78 79 2.689034 GCTGGTCTGGGCTAGGGT 60.689 66.667 0.00 0.00 0.00 4.34
79 80 1.382695 GCTGGTCTGGGCTAGGGTA 60.383 63.158 0.00 0.00 0.00 3.69
80 81 0.764752 GCTGGTCTGGGCTAGGGTAT 60.765 60.000 0.00 0.00 0.00 2.73
81 82 1.343069 CTGGTCTGGGCTAGGGTATC 58.657 60.000 0.00 0.00 0.00 2.24
82 83 0.639943 TGGTCTGGGCTAGGGTATCA 59.360 55.000 0.00 0.00 0.00 2.15
83 84 1.223077 TGGTCTGGGCTAGGGTATCAT 59.777 52.381 0.00 0.00 0.00 2.45
84 85 1.625818 GGTCTGGGCTAGGGTATCATG 59.374 57.143 0.00 0.00 0.00 3.07
85 86 1.625818 GTCTGGGCTAGGGTATCATGG 59.374 57.143 0.00 0.00 0.00 3.66
86 87 0.326264 CTGGGCTAGGGTATCATGGC 59.674 60.000 0.00 0.00 0.00 4.40
87 88 1.296715 GGGCTAGGGTATCATGGCG 59.703 63.158 0.00 0.00 31.85 5.69
88 89 1.192146 GGGCTAGGGTATCATGGCGA 61.192 60.000 0.00 0.00 31.85 5.54
89 90 0.905357 GGCTAGGGTATCATGGCGAT 59.095 55.000 0.00 0.00 38.21 4.58
90 91 1.279271 GGCTAGGGTATCATGGCGATT 59.721 52.381 0.00 0.00 35.39 3.34
91 92 2.290323 GGCTAGGGTATCATGGCGATTT 60.290 50.000 0.00 0.00 35.39 2.17
92 93 2.744202 GCTAGGGTATCATGGCGATTTG 59.256 50.000 0.00 0.00 35.39 2.32
93 94 3.807209 GCTAGGGTATCATGGCGATTTGT 60.807 47.826 0.00 0.00 35.39 2.83
94 95 2.851195 AGGGTATCATGGCGATTTGTC 58.149 47.619 0.00 0.00 35.39 3.18
95 96 1.880027 GGGTATCATGGCGATTTGTCC 59.120 52.381 0.00 0.00 35.39 4.02
96 97 1.880027 GGTATCATGGCGATTTGTCCC 59.120 52.381 0.00 0.00 35.39 4.46
97 98 2.571212 GTATCATGGCGATTTGTCCCA 58.429 47.619 0.00 0.00 35.39 4.37
98 99 2.369983 ATCATGGCGATTTGTCCCAT 57.630 45.000 0.00 0.00 39.86 4.00
99 100 1.679139 TCATGGCGATTTGTCCCATC 58.321 50.000 0.00 0.00 37.25 3.51
100 101 0.670162 CATGGCGATTTGTCCCATCC 59.330 55.000 0.00 0.00 37.25 3.51
101 102 0.552848 ATGGCGATTTGTCCCATCCT 59.447 50.000 0.00 0.00 34.33 3.24
102 103 0.107214 TGGCGATTTGTCCCATCCTC 60.107 55.000 0.00 0.00 0.00 3.71
103 104 0.819666 GGCGATTTGTCCCATCCTCC 60.820 60.000 0.00 0.00 0.00 4.30
104 105 1.160329 GCGATTTGTCCCATCCTCCG 61.160 60.000 0.00 0.00 0.00 4.63
105 106 0.464036 CGATTTGTCCCATCCTCCGA 59.536 55.000 0.00 0.00 0.00 4.55
106 107 1.070758 CGATTTGTCCCATCCTCCGAT 59.929 52.381 0.00 0.00 0.00 4.18
107 108 2.772287 GATTTGTCCCATCCTCCGATC 58.228 52.381 0.00 0.00 0.00 3.69
108 109 0.464036 TTTGTCCCATCCTCCGATCG 59.536 55.000 8.51 8.51 0.00 3.69
109 110 1.399744 TTGTCCCATCCTCCGATCGG 61.400 60.000 28.62 28.62 0.00 4.18
110 111 2.917751 TCCCATCCTCCGATCGGC 60.918 66.667 29.62 0.00 34.68 5.54
111 112 4.363990 CCCATCCTCCGATCGGCG 62.364 72.222 29.62 23.43 40.47 6.46
112 113 3.606662 CCATCCTCCGATCGGCGT 61.607 66.667 29.62 11.60 38.67 5.68
113 114 2.049985 CATCCTCCGATCGGCGTC 60.050 66.667 29.62 2.92 38.67 5.19
114 115 2.518587 ATCCTCCGATCGGCGTCA 60.519 61.111 29.62 12.23 38.67 4.35
115 116 1.903890 ATCCTCCGATCGGCGTCAT 60.904 57.895 29.62 14.02 38.67 3.06
116 117 2.147315 ATCCTCCGATCGGCGTCATG 62.147 60.000 29.62 10.43 38.67 3.07
117 118 2.721859 CTCCGATCGGCGTCATGA 59.278 61.111 29.62 9.34 38.67 3.07
118 119 1.658717 CTCCGATCGGCGTCATGAC 60.659 63.158 29.62 16.21 38.67 3.06
119 120 2.104132 CCGATCGGCGTCATGACA 59.896 61.111 23.37 6.36 38.67 3.58
120 121 1.946156 CCGATCGGCGTCATGACAG 60.946 63.158 23.37 17.71 38.67 3.51
121 122 1.226688 CGATCGGCGTCATGACAGT 60.227 57.895 24.93 5.96 34.64 3.55
122 123 1.474648 CGATCGGCGTCATGACAGTG 61.475 60.000 24.93 13.29 34.64 3.66
123 124 0.458543 GATCGGCGTCATGACAGTGT 60.459 55.000 24.93 0.00 0.00 3.55
124 125 0.037326 ATCGGCGTCATGACAGTGTT 60.037 50.000 24.93 6.35 0.00 3.32
125 126 0.249699 TCGGCGTCATGACAGTGTTT 60.250 50.000 24.93 0.00 0.00 2.83
126 127 0.110688 CGGCGTCATGACAGTGTTTG 60.111 55.000 24.93 8.32 0.00 2.93
127 128 0.238289 GGCGTCATGACAGTGTTTGG 59.762 55.000 24.93 7.61 0.00 3.28
128 129 1.225855 GCGTCATGACAGTGTTTGGA 58.774 50.000 24.93 0.00 0.00 3.53
129 130 1.195448 GCGTCATGACAGTGTTTGGAG 59.805 52.381 24.93 6.21 0.00 3.86
130 131 1.800586 CGTCATGACAGTGTTTGGAGG 59.199 52.381 24.93 0.83 0.00 4.30
131 132 2.806745 CGTCATGACAGTGTTTGGAGGT 60.807 50.000 24.93 0.00 0.00 3.85
132 133 3.214328 GTCATGACAGTGTTTGGAGGTT 58.786 45.455 21.07 0.00 0.00 3.50
133 134 3.003689 GTCATGACAGTGTTTGGAGGTTG 59.996 47.826 21.07 0.00 0.00 3.77
134 135 2.051334 TGACAGTGTTTGGAGGTTGG 57.949 50.000 0.00 0.00 0.00 3.77
135 136 1.562008 TGACAGTGTTTGGAGGTTGGA 59.438 47.619 0.00 0.00 0.00 3.53
136 137 2.222027 GACAGTGTTTGGAGGTTGGAG 58.778 52.381 0.00 0.00 0.00 3.86
137 138 1.843851 ACAGTGTTTGGAGGTTGGAGA 59.156 47.619 0.00 0.00 0.00 3.71
138 139 2.222027 CAGTGTTTGGAGGTTGGAGAC 58.778 52.381 0.00 0.00 0.00 3.36
139 140 1.202651 AGTGTTTGGAGGTTGGAGACG 60.203 52.381 0.00 0.00 0.00 4.18
140 141 1.124780 TGTTTGGAGGTTGGAGACGA 58.875 50.000 0.00 0.00 0.00 4.20
141 142 1.070134 TGTTTGGAGGTTGGAGACGAG 59.930 52.381 0.00 0.00 0.00 4.18
142 143 0.034896 TTTGGAGGTTGGAGACGAGC 59.965 55.000 0.00 0.00 42.80 5.03
146 147 2.811317 GGTTGGAGACGAGCGCTG 60.811 66.667 18.48 10.31 31.47 5.18
147 148 2.811317 GTTGGAGACGAGCGCTGG 60.811 66.667 18.48 18.54 0.00 4.85
148 149 2.989253 TTGGAGACGAGCGCTGGA 60.989 61.111 26.95 0.00 0.00 3.86
149 150 2.351244 TTGGAGACGAGCGCTGGAT 61.351 57.895 26.95 13.78 0.00 3.41
150 151 1.888436 TTGGAGACGAGCGCTGGATT 61.888 55.000 26.95 12.98 0.00 3.01
151 152 1.880340 GGAGACGAGCGCTGGATTG 60.880 63.158 26.95 7.51 0.00 2.67
152 153 1.153745 GAGACGAGCGCTGGATTGT 60.154 57.895 26.95 10.83 0.00 2.71
153 154 1.142778 GAGACGAGCGCTGGATTGTC 61.143 60.000 26.95 18.47 42.18 3.18
154 155 1.153745 GACGAGCGCTGGATTGTCT 60.154 57.895 26.95 1.45 39.40 3.41
155 156 0.100682 GACGAGCGCTGGATTGTCTA 59.899 55.000 26.95 0.00 39.40 2.59
156 157 0.747255 ACGAGCGCTGGATTGTCTAT 59.253 50.000 26.95 0.00 0.00 1.98
157 158 1.135046 CGAGCGCTGGATTGTCTATG 58.865 55.000 18.48 0.00 0.00 2.23
158 159 1.506493 GAGCGCTGGATTGTCTATGG 58.494 55.000 18.48 0.00 0.00 2.74
159 160 1.069204 GAGCGCTGGATTGTCTATGGA 59.931 52.381 18.48 0.00 0.00 3.41
160 161 1.069823 AGCGCTGGATTGTCTATGGAG 59.930 52.381 10.39 0.00 0.00 3.86
161 162 1.875576 GCGCTGGATTGTCTATGGAGG 60.876 57.143 0.00 0.00 0.00 4.30
162 163 1.270518 CGCTGGATTGTCTATGGAGGG 60.271 57.143 0.00 0.00 0.00 4.30
163 164 2.050144 GCTGGATTGTCTATGGAGGGA 58.950 52.381 0.00 0.00 0.00 4.20
164 165 2.224402 GCTGGATTGTCTATGGAGGGAC 60.224 54.545 0.00 0.00 0.00 4.46
165 166 2.370189 CTGGATTGTCTATGGAGGGACC 59.630 54.545 0.00 0.00 39.54 4.46
166 167 1.700186 GGATTGTCTATGGAGGGACCC 59.300 57.143 0.59 0.59 38.00 4.46
167 168 2.695585 GATTGTCTATGGAGGGACCCT 58.304 52.381 14.79 14.79 38.00 4.34
168 169 3.439558 GGATTGTCTATGGAGGGACCCTA 60.440 52.174 14.87 0.00 38.00 3.53
169 170 3.330126 TTGTCTATGGAGGGACCCTAG 57.670 52.381 14.87 7.44 37.94 3.02
170 171 1.503784 TGTCTATGGAGGGACCCTAGG 59.496 57.143 14.87 0.06 37.44 3.02
171 172 1.167943 TCTATGGAGGGACCCTAGGG 58.832 60.000 27.36 27.36 37.44 3.53
172 173 1.167943 CTATGGAGGGACCCTAGGGA 58.832 60.000 35.38 10.51 38.96 4.20
173 174 0.865362 TATGGAGGGACCCTAGGGAC 59.135 60.000 35.38 27.78 38.96 4.46
174 175 0.936863 ATGGAGGGACCCTAGGGACT 60.937 60.000 35.38 26.25 39.61 3.85
175 176 1.160289 TGGAGGGACCCTAGGGACTT 61.160 60.000 35.38 21.75 37.69 3.01
176 177 0.939698 GGAGGGACCCTAGGGACTTA 59.060 60.000 35.38 0.00 41.75 2.24
177 178 1.508628 GGAGGGACCCTAGGGACTTAT 59.491 57.143 35.38 17.20 41.75 1.73
178 179 2.090096 GGAGGGACCCTAGGGACTTATT 60.090 54.545 35.38 10.91 41.75 1.40
179 180 2.973406 GAGGGACCCTAGGGACTTATTG 59.027 54.545 35.38 5.24 41.75 1.90
180 181 2.321296 AGGGACCCTAGGGACTTATTGT 59.679 50.000 35.38 9.18 41.75 2.71
181 182 3.538980 AGGGACCCTAGGGACTTATTGTA 59.461 47.826 35.38 0.00 41.75 2.41
182 183 3.902467 GGGACCCTAGGGACTTATTGTAG 59.098 52.174 35.38 3.05 41.75 2.74
183 184 4.554683 GGACCCTAGGGACTTATTGTAGT 58.445 47.826 35.38 6.86 41.75 2.73
184 185 4.967442 GGACCCTAGGGACTTATTGTAGTT 59.033 45.833 35.38 6.62 41.75 2.24
185 186 5.427806 GGACCCTAGGGACTTATTGTAGTTT 59.572 44.000 35.38 6.11 41.75 2.66
186 187 6.069789 GGACCCTAGGGACTTATTGTAGTTTT 60.070 42.308 35.38 5.36 41.75 2.43
187 188 6.955364 ACCCTAGGGACTTATTGTAGTTTTC 58.045 40.000 35.38 0.00 41.75 2.29
188 189 6.734281 ACCCTAGGGACTTATTGTAGTTTTCT 59.266 38.462 35.38 1.44 41.75 2.52
189 190 7.239143 ACCCTAGGGACTTATTGTAGTTTTCTT 59.761 37.037 35.38 1.07 41.75 2.52
190 191 8.107729 CCCTAGGGACTTATTGTAGTTTTCTTT 58.892 37.037 24.99 0.00 41.75 2.52
231 232 8.677148 TTGTAAATTATCTAAGCCATCTGTCC 57.323 34.615 0.00 0.00 0.00 4.02
232 233 8.034313 TGTAAATTATCTAAGCCATCTGTCCT 57.966 34.615 0.00 0.00 0.00 3.85
233 234 9.154632 TGTAAATTATCTAAGCCATCTGTCCTA 57.845 33.333 0.00 0.00 0.00 2.94
236 237 6.859112 TTATCTAAGCCATCTGTCCTATCC 57.141 41.667 0.00 0.00 0.00 2.59
237 238 3.511477 TCTAAGCCATCTGTCCTATCCC 58.489 50.000 0.00 0.00 0.00 3.85
238 239 2.196742 AAGCCATCTGTCCTATCCCA 57.803 50.000 0.00 0.00 0.00 4.37
239 240 1.727062 AGCCATCTGTCCTATCCCAG 58.273 55.000 0.00 0.00 0.00 4.45
240 241 1.061812 AGCCATCTGTCCTATCCCAGT 60.062 52.381 0.00 0.00 0.00 4.00
241 242 1.771255 GCCATCTGTCCTATCCCAGTT 59.229 52.381 0.00 0.00 0.00 3.16
242 243 2.173569 GCCATCTGTCCTATCCCAGTTT 59.826 50.000 0.00 0.00 0.00 2.66
243 244 3.372025 GCCATCTGTCCTATCCCAGTTTT 60.372 47.826 0.00 0.00 0.00 2.43
244 245 4.860022 CCATCTGTCCTATCCCAGTTTTT 58.140 43.478 0.00 0.00 0.00 1.94
245 246 4.641989 CCATCTGTCCTATCCCAGTTTTTG 59.358 45.833 0.00 0.00 0.00 2.44
246 247 4.993705 TCTGTCCTATCCCAGTTTTTGT 57.006 40.909 0.00 0.00 0.00 2.83
247 248 6.414732 CATCTGTCCTATCCCAGTTTTTGTA 58.585 40.000 0.00 0.00 0.00 2.41
248 249 5.801380 TCTGTCCTATCCCAGTTTTTGTAC 58.199 41.667 0.00 0.00 0.00 2.90
249 250 5.546499 TCTGTCCTATCCCAGTTTTTGTACT 59.454 40.000 0.00 0.00 0.00 2.73
250 251 5.801380 TGTCCTATCCCAGTTTTTGTACTC 58.199 41.667 0.00 0.00 0.00 2.59
251 252 5.183969 GTCCTATCCCAGTTTTTGTACTCC 58.816 45.833 0.00 0.00 0.00 3.85
252 253 4.226620 TCCTATCCCAGTTTTTGTACTCCC 59.773 45.833 0.00 0.00 0.00 4.30
253 254 4.227527 CCTATCCCAGTTTTTGTACTCCCT 59.772 45.833 0.00 0.00 0.00 4.20
254 255 3.782656 TCCCAGTTTTTGTACTCCCTC 57.217 47.619 0.00 0.00 0.00 4.30
255 256 2.374170 TCCCAGTTTTTGTACTCCCTCC 59.626 50.000 0.00 0.00 0.00 4.30
256 257 2.423577 CCAGTTTTTGTACTCCCTCCG 58.576 52.381 0.00 0.00 0.00 4.63
257 258 2.224450 CCAGTTTTTGTACTCCCTCCGT 60.224 50.000 0.00 0.00 0.00 4.69
258 259 3.473625 CAGTTTTTGTACTCCCTCCGTT 58.526 45.455 0.00 0.00 0.00 4.44
259 260 3.881089 CAGTTTTTGTACTCCCTCCGTTT 59.119 43.478 0.00 0.00 0.00 3.60
260 261 4.024302 CAGTTTTTGTACTCCCTCCGTTTC 60.024 45.833 0.00 0.00 0.00 2.78
261 262 3.842007 TTTTGTACTCCCTCCGTTTCA 57.158 42.857 0.00 0.00 0.00 2.69
262 263 3.842007 TTTGTACTCCCTCCGTTTCAA 57.158 42.857 0.00 0.00 0.00 2.69
263 264 3.842007 TTGTACTCCCTCCGTTTCAAA 57.158 42.857 0.00 0.00 0.00 2.69
264 265 4.360951 TTGTACTCCCTCCGTTTCAAAT 57.639 40.909 0.00 0.00 0.00 2.32
265 266 4.360951 TGTACTCCCTCCGTTTCAAATT 57.639 40.909 0.00 0.00 0.00 1.82
266 267 5.486735 TGTACTCCCTCCGTTTCAAATTA 57.513 39.130 0.00 0.00 0.00 1.40
267 268 5.240121 TGTACTCCCTCCGTTTCAAATTAC 58.760 41.667 0.00 0.00 0.00 1.89
268 269 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
269 270 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
270 271 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
271 272 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
272 273 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
273 274 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
274 275 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
275 276 2.410730 CCGTTTCAAATTACTCGTCGCT 59.589 45.455 0.00 0.00 0.00 4.93
276 277 3.395671 CGTTTCAAATTACTCGTCGCTG 58.604 45.455 0.00 0.00 0.00 5.18
277 278 3.120616 CGTTTCAAATTACTCGTCGCTGA 59.879 43.478 0.00 0.00 0.00 4.26
278 279 4.375606 CGTTTCAAATTACTCGTCGCTGAA 60.376 41.667 0.00 0.00 0.00 3.02
279 280 5.437263 GTTTCAAATTACTCGTCGCTGAAA 58.563 37.500 0.00 0.00 0.00 2.69
280 281 5.856126 TTCAAATTACTCGTCGCTGAAAT 57.144 34.783 0.00 0.00 0.00 2.17
281 282 5.203358 TCAAATTACTCGTCGCTGAAATG 57.797 39.130 0.00 0.00 0.00 2.32
282 283 4.092821 TCAAATTACTCGTCGCTGAAATGG 59.907 41.667 0.00 0.00 0.00 3.16
283 284 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
284 285 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
285 286 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
286 287 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
287 288 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
288 289 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
289 290 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
290 291 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
291 292 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
292 293 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
293 294 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
294 295 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
295 296 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
296 297 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
297 298 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
298 299 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
299 300 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
325 326 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
326 327 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
327 328 2.724977 AGATACATCCATACGTGCGG 57.275 50.000 0.00 0.00 0.00 5.69
328 329 1.068474 GATACATCCATACGTGCGGC 58.932 55.000 0.00 0.00 0.00 6.53
329 330 0.391228 ATACATCCATACGTGCGGCA 59.609 50.000 0.00 0.00 0.00 5.69
330 331 0.175989 TACATCCATACGTGCGGCAA 59.824 50.000 3.23 0.00 0.00 4.52
331 332 0.675208 ACATCCATACGTGCGGCAAA 60.675 50.000 3.23 0.00 0.00 3.68
332 333 0.248054 CATCCATACGTGCGGCAAAC 60.248 55.000 3.23 0.00 0.00 2.93
333 334 0.392461 ATCCATACGTGCGGCAAACT 60.392 50.000 3.23 0.00 0.00 2.66
334 335 0.246910 TCCATACGTGCGGCAAACTA 59.753 50.000 3.23 0.00 0.00 2.24
335 336 1.080298 CCATACGTGCGGCAAACTAA 58.920 50.000 3.23 0.00 0.00 2.24
336 337 1.465387 CCATACGTGCGGCAAACTAAA 59.535 47.619 3.23 0.00 0.00 1.85
337 338 2.095668 CCATACGTGCGGCAAACTAAAA 60.096 45.455 3.23 0.00 0.00 1.52
338 339 3.426963 CCATACGTGCGGCAAACTAAAAT 60.427 43.478 3.23 0.00 0.00 1.82
339 340 4.201832 CCATACGTGCGGCAAACTAAAATA 60.202 41.667 3.23 0.00 0.00 1.40
340 341 3.191735 ACGTGCGGCAAACTAAAATAC 57.808 42.857 3.23 0.00 0.00 1.89
341 342 2.548904 ACGTGCGGCAAACTAAAATACA 59.451 40.909 3.23 0.00 0.00 2.29
342 343 3.189702 ACGTGCGGCAAACTAAAATACAT 59.810 39.130 3.23 0.00 0.00 2.29
343 344 3.783943 CGTGCGGCAAACTAAAATACATC 59.216 43.478 3.23 0.00 0.00 3.06
344 345 4.436852 CGTGCGGCAAACTAAAATACATCT 60.437 41.667 3.23 0.00 0.00 2.90
345 346 5.220510 CGTGCGGCAAACTAAAATACATCTA 60.221 40.000 3.23 0.00 0.00 1.98
346 347 6.192360 GTGCGGCAAACTAAAATACATCTAG 58.808 40.000 3.23 0.00 0.00 2.43
347 348 6.036735 GTGCGGCAAACTAAAATACATCTAGA 59.963 38.462 3.23 0.00 0.00 2.43
348 349 6.765989 TGCGGCAAACTAAAATACATCTAGAT 59.234 34.615 0.00 0.00 0.00 1.98
349 350 7.929245 TGCGGCAAACTAAAATACATCTAGATA 59.071 33.333 4.54 0.00 0.00 1.98
350 351 8.221766 GCGGCAAACTAAAATACATCTAGATAC 58.778 37.037 4.54 0.00 0.00 2.24
351 352 9.256477 CGGCAAACTAAAATACATCTAGATACA 57.744 33.333 4.54 0.00 0.00 2.29
362 363 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
363 364 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
364 365 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
365 366 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
366 367 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
367 368 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
368 369 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
369 370 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
370 371 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
371 372 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
372 373 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
373 374 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
374 375 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
375 376 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
376 377 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
377 378 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
378 379 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
379 380 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
394 395 2.140839 GGAACGGAGGGAGTAGAAGA 57.859 55.000 0.00 0.00 0.00 2.87
395 396 2.668625 GGAACGGAGGGAGTAGAAGAT 58.331 52.381 0.00 0.00 0.00 2.40
396 397 3.830121 GGAACGGAGGGAGTAGAAGATA 58.170 50.000 0.00 0.00 0.00 1.98
397 398 4.409187 GGAACGGAGGGAGTAGAAGATAT 58.591 47.826 0.00 0.00 0.00 1.63
398 399 4.460034 GGAACGGAGGGAGTAGAAGATATC 59.540 50.000 0.00 0.00 0.00 1.63
399 400 4.726035 ACGGAGGGAGTAGAAGATATCA 57.274 45.455 5.32 0.00 0.00 2.15
400 401 4.400120 ACGGAGGGAGTAGAAGATATCAC 58.600 47.826 5.32 0.00 0.00 3.06
401 402 4.141228 ACGGAGGGAGTAGAAGATATCACA 60.141 45.833 5.32 0.00 0.00 3.58
402 403 5.013547 CGGAGGGAGTAGAAGATATCACAT 58.986 45.833 5.32 0.00 0.00 3.21
403 404 5.124776 CGGAGGGAGTAGAAGATATCACATC 59.875 48.000 5.32 0.48 0.00 3.06
404 405 6.252995 GGAGGGAGTAGAAGATATCACATCT 58.747 44.000 5.32 8.02 0.00 2.90
405 406 6.152661 GGAGGGAGTAGAAGATATCACATCTG 59.847 46.154 5.32 0.00 0.00 2.90
406 407 6.619464 AGGGAGTAGAAGATATCACATCTGT 58.381 40.000 5.32 0.00 0.00 3.41
407 408 7.760607 AGGGAGTAGAAGATATCACATCTGTA 58.239 38.462 5.32 0.00 0.00 2.74
408 409 8.397957 AGGGAGTAGAAGATATCACATCTGTAT 58.602 37.037 5.32 0.00 0.00 2.29
409 410 8.465999 GGGAGTAGAAGATATCACATCTGTATG 58.534 40.741 5.32 0.00 39.17 2.39
417 418 9.783081 AAGATATCACATCTGTATGTATTTGCA 57.217 29.630 5.32 0.00 44.70 4.08
418 419 9.212641 AGATATCACATCTGTATGTATTTGCAC 57.787 33.333 5.32 0.00 44.70 4.57
419 420 9.212641 GATATCACATCTGTATGTATTTGCACT 57.787 33.333 0.00 0.00 44.70 4.40
420 421 7.870509 ATCACATCTGTATGTATTTGCACTT 57.129 32.000 0.00 0.00 44.70 3.16
421 422 7.686438 TCACATCTGTATGTATTTGCACTTT 57.314 32.000 0.00 0.00 44.70 2.66
422 423 7.751732 TCACATCTGTATGTATTTGCACTTTC 58.248 34.615 0.00 0.00 44.70 2.62
423 424 7.607607 TCACATCTGTATGTATTTGCACTTTCT 59.392 33.333 0.00 0.00 44.70 2.52
424 425 8.239314 CACATCTGTATGTATTTGCACTTTCTT 58.761 33.333 0.00 0.00 44.70 2.52
425 426 8.796475 ACATCTGTATGTATTTGCACTTTCTTT 58.204 29.630 0.00 0.00 44.66 2.52
426 427 9.630098 CATCTGTATGTATTTGCACTTTCTTTT 57.370 29.630 0.00 0.00 0.00 2.27
427 428 9.846248 ATCTGTATGTATTTGCACTTTCTTTTC 57.154 29.630 0.00 0.00 0.00 2.29
428 429 9.066892 TCTGTATGTATTTGCACTTTCTTTTCT 57.933 29.630 0.00 0.00 0.00 2.52
429 430 9.334693 CTGTATGTATTTGCACTTTCTTTTCTC 57.665 33.333 0.00 0.00 0.00 2.87
430 431 9.066892 TGTATGTATTTGCACTTTCTTTTCTCT 57.933 29.630 0.00 0.00 0.00 3.10
431 432 9.899226 GTATGTATTTGCACTTTCTTTTCTCTT 57.101 29.630 0.00 0.00 0.00 2.85
433 434 7.995289 TGTATTTGCACTTTCTTTTCTCTTCA 58.005 30.769 0.00 0.00 0.00 3.02
434 435 8.465999 TGTATTTGCACTTTCTTTTCTCTTCAA 58.534 29.630 0.00 0.00 0.00 2.69
435 436 9.468532 GTATTTGCACTTTCTTTTCTCTTCAAT 57.531 29.630 0.00 0.00 0.00 2.57
436 437 7.760131 TTTGCACTTTCTTTTCTCTTCAATG 57.240 32.000 0.00 0.00 0.00 2.82
437 438 6.455360 TGCACTTTCTTTTCTCTTCAATGT 57.545 33.333 0.00 0.00 0.00 2.71
438 439 6.866480 TGCACTTTCTTTTCTCTTCAATGTT 58.134 32.000 0.00 0.00 0.00 2.71
439 440 7.995289 TGCACTTTCTTTTCTCTTCAATGTTA 58.005 30.769 0.00 0.00 0.00 2.41
440 441 8.465999 TGCACTTTCTTTTCTCTTCAATGTTAA 58.534 29.630 0.00 0.00 0.00 2.01
441 442 9.468532 GCACTTTCTTTTCTCTTCAATGTTAAT 57.531 29.630 0.00 0.00 0.00 1.40
481 482 9.647797 AAAACAAAAACCTACTAAAAACTGGAG 57.352 29.630 0.00 0.00 0.00 3.86
482 483 7.949690 ACAAAAACCTACTAAAAACTGGAGT 57.050 32.000 0.00 0.00 0.00 3.85
483 484 7.993101 ACAAAAACCTACTAAAAACTGGAGTC 58.007 34.615 0.00 0.00 0.00 3.36
484 485 7.612633 ACAAAAACCTACTAAAAACTGGAGTCA 59.387 33.333 0.00 0.00 0.00 3.41
485 486 7.563888 AAAACCTACTAAAAACTGGAGTCAC 57.436 36.000 0.00 0.00 0.00 3.67
486 487 5.224821 ACCTACTAAAAACTGGAGTCACC 57.775 43.478 0.00 0.00 39.54 4.02
488 489 4.995487 CCTACTAAAAACTGGAGTCACCAC 59.005 45.833 0.00 0.00 44.64 4.16
489 490 4.497291 ACTAAAAACTGGAGTCACCACA 57.503 40.909 0.00 0.00 44.64 4.17
490 491 5.048846 ACTAAAAACTGGAGTCACCACAT 57.951 39.130 0.00 0.00 44.64 3.21
491 492 6.182507 ACTAAAAACTGGAGTCACCACATA 57.817 37.500 0.00 0.00 44.64 2.29
492 493 5.995897 ACTAAAAACTGGAGTCACCACATAC 59.004 40.000 0.00 0.00 44.64 2.39
493 494 2.743636 AACTGGAGTCACCACATACG 57.256 50.000 0.00 0.00 44.64 3.06
494 495 0.246635 ACTGGAGTCACCACATACGC 59.753 55.000 0.00 0.00 44.64 4.42
495 496 0.460284 CTGGAGTCACCACATACGCC 60.460 60.000 0.00 0.00 44.64 5.68
496 497 1.153429 GGAGTCACCACATACGCCC 60.153 63.158 0.00 0.00 38.79 6.13
497 498 1.153429 GAGTCACCACATACGCCCC 60.153 63.158 0.00 0.00 0.00 5.80
498 499 2.124860 GTCACCACATACGCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
499 500 2.608059 TCACCACATACGCCCCCA 60.608 61.111 0.00 0.00 0.00 4.96
500 501 2.224877 TCACCACATACGCCCCCAA 61.225 57.895 0.00 0.00 0.00 4.12
501 502 2.043980 CACCACATACGCCCCCAAC 61.044 63.158 0.00 0.00 0.00 3.77
502 503 2.439519 CCACATACGCCCCCAACC 60.440 66.667 0.00 0.00 0.00 3.77
503 504 2.353189 CACATACGCCCCCAACCA 59.647 61.111 0.00 0.00 0.00 3.67
504 505 1.748879 CACATACGCCCCCAACCAG 60.749 63.158 0.00 0.00 0.00 4.00
505 506 2.228480 ACATACGCCCCCAACCAGT 61.228 57.895 0.00 0.00 0.00 4.00
506 507 1.451387 CATACGCCCCCAACCAGTC 60.451 63.158 0.00 0.00 0.00 3.51
507 508 1.615424 ATACGCCCCCAACCAGTCT 60.615 57.895 0.00 0.00 0.00 3.24
508 509 1.910580 ATACGCCCCCAACCAGTCTG 61.911 60.000 0.00 0.00 0.00 3.51
509 510 3.953775 CGCCCCCAACCAGTCTGT 61.954 66.667 0.00 0.00 0.00 3.41
510 511 2.520968 GCCCCCAACCAGTCTGTT 59.479 61.111 0.00 0.00 0.00 3.16
511 512 1.603739 GCCCCCAACCAGTCTGTTC 60.604 63.158 0.00 0.00 0.00 3.18
512 513 1.843421 CCCCCAACCAGTCTGTTCA 59.157 57.895 0.00 0.00 0.00 3.18
513 514 0.184933 CCCCCAACCAGTCTGTTCAA 59.815 55.000 0.00 0.00 0.00 2.69
514 515 1.410932 CCCCCAACCAGTCTGTTCAAA 60.411 52.381 0.00 0.00 0.00 2.69
515 516 2.597455 CCCCAACCAGTCTGTTCAAAT 58.403 47.619 0.00 0.00 0.00 2.32
516 517 2.297033 CCCCAACCAGTCTGTTCAAATG 59.703 50.000 0.00 0.00 0.00 2.32
517 518 2.958355 CCCAACCAGTCTGTTCAAATGT 59.042 45.455 0.00 0.00 0.00 2.71
518 519 3.384467 CCCAACCAGTCTGTTCAAATGTT 59.616 43.478 0.00 0.00 0.00 2.71
519 520 4.499696 CCCAACCAGTCTGTTCAAATGTTC 60.500 45.833 0.00 0.00 0.00 3.18
545 546 1.337074 CGTGGCTACCGTAACCTCAAA 60.337 52.381 0.00 0.00 0.00 2.69
556 557 7.294676 ACCGTAACCTCAAAAATAATACGTC 57.705 36.000 0.00 0.00 34.48 4.34
572 573 1.555075 ACGTCTGTGGGCATCATAGTT 59.445 47.619 3.74 0.00 36.22 2.24
582 583 7.062322 TGTGGGCATCATAGTTCTTATCAAAT 58.938 34.615 0.00 0.00 0.00 2.32
588 589 9.494271 GCATCATAGTTCTTATCAAATCCTGTA 57.506 33.333 0.00 0.00 0.00 2.74
605 606 1.066215 TGTACATGAGCTTCGTGGCAT 60.066 47.619 0.00 0.00 37.70 4.40
608 609 2.009774 ACATGAGCTTCGTGGCATAAC 58.990 47.619 0.00 0.00 37.70 1.89
611 612 2.778299 TGAGCTTCGTGGCATAACTTT 58.222 42.857 0.00 0.00 34.17 2.66
654 655 1.836999 ATGGCCGGCACACTCTACAA 61.837 55.000 30.85 0.00 0.00 2.41
658 659 0.732880 CCGGCACACTCTACAAGTCG 60.733 60.000 0.00 0.00 35.45 4.18
661 662 1.497991 GCACACTCTACAAGTCGCAA 58.502 50.000 0.00 0.00 35.45 4.85
725 752 6.436843 AGTTTACAAGGAAACTGTGTGAAG 57.563 37.500 9.53 0.00 45.70 3.02
740 768 5.189928 TGTGTGAAGAAGACAAGGCTAAAA 58.810 37.500 0.00 0.00 0.00 1.52
753 781 3.735591 AGGCTAAAACAGAGCACGTAAA 58.264 40.909 0.00 0.00 41.98 2.01
757 785 5.080068 GCTAAAACAGAGCACGTAAACATC 58.920 41.667 0.00 0.00 39.84 3.06
758 786 4.483476 AAAACAGAGCACGTAAACATCC 57.517 40.909 0.00 0.00 0.00 3.51
802 833 4.053469 ACGGAAAAAGGACAACCAAATG 57.947 40.909 0.00 0.00 38.94 2.32
803 834 3.702045 ACGGAAAAAGGACAACCAAATGA 59.298 39.130 0.00 0.00 38.94 2.57
1014 1045 2.026641 CCATCAATGGCGTCCATCTTT 58.973 47.619 11.08 0.00 44.40 2.52
1026 1057 1.590932 CCATCTTTGGATCTCCTGCG 58.409 55.000 0.00 0.00 46.92 5.18
1027 1058 1.590932 CATCTTTGGATCTCCTGCGG 58.409 55.000 0.00 0.00 36.82 5.69
1028 1059 1.134280 CATCTTTGGATCTCCTGCGGT 60.134 52.381 0.00 0.00 36.82 5.68
1029 1060 0.250234 TCTTTGGATCTCCTGCGGTG 59.750 55.000 0.00 0.00 36.82 4.94
1030 1061 1.372087 CTTTGGATCTCCTGCGGTGC 61.372 60.000 0.00 0.00 36.82 5.01
1031 1062 2.123248 TTTGGATCTCCTGCGGTGCA 62.123 55.000 0.00 0.00 36.92 4.57
1048 1079 4.694233 AGGTGCTGGCTGCTGTCG 62.694 66.667 17.45 0.00 43.37 4.35
2453 2514 2.430367 GTCTTCGCCCACCACCTT 59.570 61.111 0.00 0.00 0.00 3.50
2470 2531 2.823747 ACCTTGTCTGCACATACGAGTA 59.176 45.455 0.00 0.00 30.55 2.59
2525 2597 2.423892 TCCAATGTCTAGCTCTGACGTC 59.576 50.000 9.11 9.11 37.26 4.34
2654 2750 2.436646 CCAGCTCCGGCGATTTGT 60.437 61.111 9.30 0.00 44.37 2.83
2735 2854 0.037882 AGCATGTGACAGACCGACAG 60.038 55.000 0.00 0.00 0.00 3.51
2771 2892 1.202568 TGTCATCGGCATGGTCAGATC 60.203 52.381 0.00 0.00 0.00 2.75
2803 2924 5.290493 TGAGGCTACTTGTATTGTATGGG 57.710 43.478 0.00 0.00 0.00 4.00
2830 2951 9.769093 CCAACTATATGCAAACTTTACTTGTAC 57.231 33.333 0.00 0.00 0.00 2.90
2974 3099 4.510711 CCAAACATGTAAACTTGCAATGCA 59.489 37.500 2.72 2.72 36.47 3.96
3056 3181 4.701956 ACTTGCAATGCCACACTATAAC 57.298 40.909 1.53 0.00 0.00 1.89
3108 3233 4.173971 GCGCATTGCCAAAGAAGG 57.826 55.556 0.30 0.00 37.76 3.46
3116 3241 3.386932 TTGCCAAAGAAGGATAGCCAT 57.613 42.857 0.00 0.00 36.29 4.40
3123 3250 4.348863 AAGAAGGATAGCCATGTAGCTG 57.651 45.455 0.00 0.00 44.67 4.24
3134 3261 3.190118 GCCATGTAGCTGAGCATTATTCC 59.810 47.826 7.39 0.00 0.00 3.01
3139 3266 3.482156 AGCTGAGCATTATTCCGATGT 57.518 42.857 7.39 0.00 0.00 3.06
3160 3287 0.454452 CATCTCTCGCGACGAACACA 60.454 55.000 3.71 0.00 34.74 3.72
3167 3294 2.935955 CGACGAACACAGCCCAAC 59.064 61.111 0.00 0.00 0.00 3.77
3284 3411 2.775384 ACAAACTCCAGTGACCAGGTAA 59.225 45.455 0.00 0.00 0.00 2.85
3293 3420 0.250553 TGACCAGGTAACAAAGCCGG 60.251 55.000 0.00 0.00 41.41 6.13
3295 3422 2.686816 CCAGGTAACAAAGCCGGCG 61.687 63.158 23.20 9.91 41.41 6.46
3301 3428 1.231958 TAACAAAGCCGGCGAACAGG 61.232 55.000 23.20 11.27 0.00 4.00
3318 3445 3.062639 GGGCAAAGGCACAAGCAT 58.937 55.556 0.00 0.00 45.12 3.79
3374 3502 4.256920 CTCCAATGGCTATGGTATACTGC 58.743 47.826 2.25 2.97 39.09 4.40
3404 3532 1.133025 GAATCAACCAACATGCCCTCG 59.867 52.381 0.00 0.00 0.00 4.63
3407 3535 1.152830 AACCAACATGCCCTCGGTT 59.847 52.632 0.00 0.00 35.13 4.44
3452 3580 1.010419 AACCGAACGAAACCGATCCG 61.010 55.000 0.00 0.00 0.00 4.18
3606 3735 1.145119 GTCACCTCCCCCTTTTCTTGT 59.855 52.381 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.880278 GTGAGCGAGGCACTTGTCAA 60.880 55.000 0.00 0.00 43.14 3.18
1 2 1.300931 GTGAGCGAGGCACTTGTCA 60.301 57.895 0.00 0.00 43.14 3.58
2 3 0.880278 TTGTGAGCGAGGCACTTGTC 60.880 55.000 0.00 0.00 43.14 3.18
3 4 1.146041 TTGTGAGCGAGGCACTTGT 59.854 52.632 0.00 0.00 43.14 3.16
4 5 1.159713 TGTTGTGAGCGAGGCACTTG 61.160 55.000 0.00 0.00 41.55 3.16
5 6 0.882042 CTGTTGTGAGCGAGGCACTT 60.882 55.000 0.00 0.00 41.55 3.16
7 8 1.300931 TCTGTTGTGAGCGAGGCAC 60.301 57.895 0.00 0.00 36.81 5.01
8 9 1.300931 GTCTGTTGTGAGCGAGGCA 60.301 57.895 0.00 0.00 0.00 4.75
9 10 0.671781 ATGTCTGTTGTGAGCGAGGC 60.672 55.000 0.00 0.00 0.00 4.70
10 11 1.800805 AATGTCTGTTGTGAGCGAGG 58.199 50.000 0.00 0.00 0.00 4.63
11 12 3.248363 TGAAAATGTCTGTTGTGAGCGAG 59.752 43.478 0.00 0.00 0.00 5.03
12 13 3.202097 TGAAAATGTCTGTTGTGAGCGA 58.798 40.909 0.00 0.00 0.00 4.93
13 14 3.607422 TGAAAATGTCTGTTGTGAGCG 57.393 42.857 0.00 0.00 0.00 5.03
14 15 5.368256 AGATGAAAATGTCTGTTGTGAGC 57.632 39.130 0.00 0.00 0.00 4.26
15 16 8.638685 AAAAAGATGAAAATGTCTGTTGTGAG 57.361 30.769 0.00 0.00 0.00 3.51
19 20 9.853921 GCTTTAAAAAGATGAAAATGTCTGTTG 57.146 29.630 6.64 0.00 38.28 3.33
20 21 9.045223 GGCTTTAAAAAGATGAAAATGTCTGTT 57.955 29.630 6.64 0.00 38.28 3.16
21 22 8.424133 AGGCTTTAAAAAGATGAAAATGTCTGT 58.576 29.630 6.64 0.00 38.28 3.41
22 23 8.822652 AGGCTTTAAAAAGATGAAAATGTCTG 57.177 30.769 6.64 0.00 38.28 3.51
23 24 8.864087 AGAGGCTTTAAAAAGATGAAAATGTCT 58.136 29.630 6.64 0.00 38.28 3.41
24 25 8.919661 CAGAGGCTTTAAAAAGATGAAAATGTC 58.080 33.333 6.64 0.00 38.28 3.06
25 26 8.424133 ACAGAGGCTTTAAAAAGATGAAAATGT 58.576 29.630 6.64 0.00 38.28 2.71
26 27 8.706035 CACAGAGGCTTTAAAAAGATGAAAATG 58.294 33.333 6.64 0.00 38.28 2.32
27 28 8.424133 ACACAGAGGCTTTAAAAAGATGAAAAT 58.576 29.630 6.64 0.00 38.28 1.82
28 29 7.781056 ACACAGAGGCTTTAAAAAGATGAAAA 58.219 30.769 6.64 0.00 38.28 2.29
29 30 7.068103 TGACACAGAGGCTTTAAAAAGATGAAA 59.932 33.333 6.64 0.00 38.28 2.69
30 31 6.545666 TGACACAGAGGCTTTAAAAAGATGAA 59.454 34.615 6.64 0.00 38.28 2.57
31 32 6.061441 TGACACAGAGGCTTTAAAAAGATGA 58.939 36.000 6.64 0.00 38.28 2.92
32 33 6.317789 TGACACAGAGGCTTTAAAAAGATG 57.682 37.500 6.64 2.29 38.28 2.90
33 34 6.959639 TTGACACAGAGGCTTTAAAAAGAT 57.040 33.333 6.64 0.00 38.28 2.40
34 35 6.239008 CCATTGACACAGAGGCTTTAAAAAGA 60.239 38.462 6.64 0.00 38.28 2.52
35 36 5.922544 CCATTGACACAGAGGCTTTAAAAAG 59.077 40.000 0.00 0.00 39.03 2.27
36 37 5.362430 ACCATTGACACAGAGGCTTTAAAAA 59.638 36.000 0.00 0.00 0.00 1.94
37 38 4.892934 ACCATTGACACAGAGGCTTTAAAA 59.107 37.500 0.00 0.00 0.00 1.52
38 39 4.278170 CACCATTGACACAGAGGCTTTAAA 59.722 41.667 0.00 0.00 0.00 1.52
39 40 3.820467 CACCATTGACACAGAGGCTTTAA 59.180 43.478 0.00 0.00 0.00 1.52
40 41 3.411446 CACCATTGACACAGAGGCTTTA 58.589 45.455 0.00 0.00 0.00 1.85
41 42 2.233271 CACCATTGACACAGAGGCTTT 58.767 47.619 0.00 0.00 0.00 3.51
42 43 1.901591 CACCATTGACACAGAGGCTT 58.098 50.000 0.00 0.00 0.00 4.35
43 44 0.607489 GCACCATTGACACAGAGGCT 60.607 55.000 0.00 0.00 0.00 4.58
44 45 0.607489 AGCACCATTGACACAGAGGC 60.607 55.000 0.00 0.00 0.00 4.70
45 46 1.162698 CAGCACCATTGACACAGAGG 58.837 55.000 0.00 0.00 0.00 3.69
46 47 1.162698 CCAGCACCATTGACACAGAG 58.837 55.000 0.00 0.00 0.00 3.35
47 48 0.473755 ACCAGCACCATTGACACAGA 59.526 50.000 0.00 0.00 0.00 3.41
48 49 0.877071 GACCAGCACCATTGACACAG 59.123 55.000 0.00 0.00 0.00 3.66
49 50 0.473755 AGACCAGCACCATTGACACA 59.526 50.000 0.00 0.00 0.00 3.72
50 51 0.877071 CAGACCAGCACCATTGACAC 59.123 55.000 0.00 0.00 0.00 3.67
51 52 0.250858 CCAGACCAGCACCATTGACA 60.251 55.000 0.00 0.00 0.00 3.58
52 53 0.962356 CCCAGACCAGCACCATTGAC 60.962 60.000 0.00 0.00 0.00 3.18
53 54 1.379916 CCCAGACCAGCACCATTGA 59.620 57.895 0.00 0.00 0.00 2.57
54 55 2.345760 GCCCAGACCAGCACCATTG 61.346 63.158 0.00 0.00 0.00 2.82
55 56 1.207488 TAGCCCAGACCAGCACCATT 61.207 55.000 0.00 0.00 0.00 3.16
56 57 1.616327 TAGCCCAGACCAGCACCAT 60.616 57.895 0.00 0.00 0.00 3.55
57 58 2.203922 TAGCCCAGACCAGCACCA 60.204 61.111 0.00 0.00 0.00 4.17
58 59 2.586792 CTAGCCCAGACCAGCACC 59.413 66.667 0.00 0.00 0.00 5.01
59 60 2.586792 CCTAGCCCAGACCAGCAC 59.413 66.667 0.00 0.00 0.00 4.40
60 61 2.176202 TACCCTAGCCCAGACCAGCA 62.176 60.000 0.00 0.00 0.00 4.41
61 62 0.764752 ATACCCTAGCCCAGACCAGC 60.765 60.000 0.00 0.00 0.00 4.85
62 63 1.343069 GATACCCTAGCCCAGACCAG 58.657 60.000 0.00 0.00 0.00 4.00
63 64 0.639943 TGATACCCTAGCCCAGACCA 59.360 55.000 0.00 0.00 0.00 4.02
64 65 1.625818 CATGATACCCTAGCCCAGACC 59.374 57.143 0.00 0.00 0.00 3.85
65 66 1.625818 CCATGATACCCTAGCCCAGAC 59.374 57.143 0.00 0.00 0.00 3.51
66 67 2.030027 CCATGATACCCTAGCCCAGA 57.970 55.000 0.00 0.00 0.00 3.86
67 68 0.326264 GCCATGATACCCTAGCCCAG 59.674 60.000 0.00 0.00 0.00 4.45
68 69 1.480212 CGCCATGATACCCTAGCCCA 61.480 60.000 0.00 0.00 0.00 5.36
69 70 1.192146 TCGCCATGATACCCTAGCCC 61.192 60.000 0.00 0.00 0.00 5.19
70 71 0.905357 ATCGCCATGATACCCTAGCC 59.095 55.000 0.00 0.00 34.83 3.93
71 72 2.744202 CAAATCGCCATGATACCCTAGC 59.256 50.000 0.00 0.00 35.84 3.42
72 73 3.997021 GACAAATCGCCATGATACCCTAG 59.003 47.826 0.00 0.00 35.84 3.02
73 74 3.244422 GGACAAATCGCCATGATACCCTA 60.244 47.826 0.00 0.00 35.84 3.53
74 75 2.487265 GGACAAATCGCCATGATACCCT 60.487 50.000 0.00 0.00 35.84 4.34
75 76 1.880027 GGACAAATCGCCATGATACCC 59.120 52.381 0.00 0.00 35.84 3.69
76 77 1.880027 GGGACAAATCGCCATGATACC 59.120 52.381 0.00 0.00 35.84 2.73
77 78 2.571212 TGGGACAAATCGCCATGATAC 58.429 47.619 0.00 0.00 35.84 2.24
79 80 3.901087 TGGGACAAATCGCCATGAT 57.099 47.368 0.00 0.00 39.67 2.45
95 96 3.559657 GACGCCGATCGGAGGATGG 62.560 68.421 37.64 18.91 43.86 3.51
96 97 2.049985 GACGCCGATCGGAGGATG 60.050 66.667 37.64 21.12 43.86 3.51
97 98 1.903890 ATGACGCCGATCGGAGGAT 60.904 57.895 37.64 25.24 43.86 3.24
98 99 2.518587 ATGACGCCGATCGGAGGA 60.519 61.111 37.64 24.17 43.86 3.71
99 100 2.355126 CATGACGCCGATCGGAGG 60.355 66.667 37.64 27.88 43.86 4.30
100 101 1.658717 GTCATGACGCCGATCGGAG 60.659 63.158 37.64 35.01 43.86 4.63
101 102 2.336400 CTGTCATGACGCCGATCGGA 62.336 60.000 37.64 17.39 43.86 4.55
102 103 1.946156 CTGTCATGACGCCGATCGG 60.946 63.158 30.03 30.03 43.86 4.18
103 104 1.226688 ACTGTCATGACGCCGATCG 60.227 57.895 20.54 8.51 45.38 3.69
104 105 0.458543 ACACTGTCATGACGCCGATC 60.459 55.000 20.54 0.00 0.00 3.69
105 106 0.037326 AACACTGTCATGACGCCGAT 60.037 50.000 20.54 4.54 0.00 4.18
106 107 0.249699 AAACACTGTCATGACGCCGA 60.250 50.000 20.54 2.39 0.00 5.54
107 108 0.110688 CAAACACTGTCATGACGCCG 60.111 55.000 20.54 13.52 0.00 6.46
108 109 0.238289 CCAAACACTGTCATGACGCC 59.762 55.000 20.54 0.00 0.00 5.68
109 110 1.195448 CTCCAAACACTGTCATGACGC 59.805 52.381 20.54 0.00 0.00 5.19
110 111 1.800586 CCTCCAAACACTGTCATGACG 59.199 52.381 20.54 16.72 0.00 4.35
111 112 2.851195 ACCTCCAAACACTGTCATGAC 58.149 47.619 19.27 19.27 0.00 3.06
112 113 3.213506 CAACCTCCAAACACTGTCATGA 58.786 45.455 0.00 0.00 0.00 3.07
113 114 2.294233 CCAACCTCCAAACACTGTCATG 59.706 50.000 0.00 0.00 0.00 3.07
114 115 2.174639 TCCAACCTCCAAACACTGTCAT 59.825 45.455 0.00 0.00 0.00 3.06
115 116 1.562008 TCCAACCTCCAAACACTGTCA 59.438 47.619 0.00 0.00 0.00 3.58
116 117 2.158813 TCTCCAACCTCCAAACACTGTC 60.159 50.000 0.00 0.00 0.00 3.51
117 118 1.843851 TCTCCAACCTCCAAACACTGT 59.156 47.619 0.00 0.00 0.00 3.55
118 119 2.222027 GTCTCCAACCTCCAAACACTG 58.778 52.381 0.00 0.00 0.00 3.66
119 120 1.202651 CGTCTCCAACCTCCAAACACT 60.203 52.381 0.00 0.00 0.00 3.55
120 121 1.202604 TCGTCTCCAACCTCCAAACAC 60.203 52.381 0.00 0.00 0.00 3.32
121 122 1.070134 CTCGTCTCCAACCTCCAAACA 59.930 52.381 0.00 0.00 0.00 2.83
122 123 1.797025 CTCGTCTCCAACCTCCAAAC 58.203 55.000 0.00 0.00 0.00 2.93
123 124 0.034896 GCTCGTCTCCAACCTCCAAA 59.965 55.000 0.00 0.00 0.00 3.28
124 125 1.671742 GCTCGTCTCCAACCTCCAA 59.328 57.895 0.00 0.00 0.00 3.53
125 126 2.636412 CGCTCGTCTCCAACCTCCA 61.636 63.158 0.00 0.00 0.00 3.86
126 127 2.182030 CGCTCGTCTCCAACCTCC 59.818 66.667 0.00 0.00 0.00 4.30
127 128 2.507324 GCGCTCGTCTCCAACCTC 60.507 66.667 0.00 0.00 0.00 3.85
128 129 2.992114 AGCGCTCGTCTCCAACCT 60.992 61.111 2.64 0.00 0.00 3.50
129 130 2.811317 CAGCGCTCGTCTCCAACC 60.811 66.667 7.13 0.00 0.00 3.77
130 131 2.564553 ATCCAGCGCTCGTCTCCAAC 62.565 60.000 7.13 0.00 0.00 3.77
131 132 1.888436 AATCCAGCGCTCGTCTCCAA 61.888 55.000 7.13 0.00 0.00 3.53
132 133 2.351244 AATCCAGCGCTCGTCTCCA 61.351 57.895 7.13 0.00 0.00 3.86
133 134 1.880340 CAATCCAGCGCTCGTCTCC 60.880 63.158 7.13 0.00 0.00 3.71
134 135 1.142778 GACAATCCAGCGCTCGTCTC 61.143 60.000 7.13 0.00 0.00 3.36
135 136 1.153745 GACAATCCAGCGCTCGTCT 60.154 57.895 7.13 0.00 0.00 4.18
136 137 0.100682 TAGACAATCCAGCGCTCGTC 59.899 55.000 7.13 9.60 0.00 4.20
137 138 0.747255 ATAGACAATCCAGCGCTCGT 59.253 50.000 7.13 0.00 0.00 4.18
138 139 1.135046 CATAGACAATCCAGCGCTCG 58.865 55.000 7.13 0.00 0.00 5.03
139 140 1.069204 TCCATAGACAATCCAGCGCTC 59.931 52.381 7.13 0.00 0.00 5.03
140 141 1.069823 CTCCATAGACAATCCAGCGCT 59.930 52.381 2.64 2.64 0.00 5.92
141 142 1.506493 CTCCATAGACAATCCAGCGC 58.494 55.000 0.00 0.00 0.00 5.92
142 143 1.270518 CCCTCCATAGACAATCCAGCG 60.271 57.143 0.00 0.00 0.00 5.18
143 144 2.050144 TCCCTCCATAGACAATCCAGC 58.950 52.381 0.00 0.00 0.00 4.85
144 145 2.370189 GGTCCCTCCATAGACAATCCAG 59.630 54.545 0.00 0.00 34.58 3.86
145 146 2.408565 GGTCCCTCCATAGACAATCCA 58.591 52.381 0.00 0.00 34.58 3.41
146 147 1.700186 GGGTCCCTCCATAGACAATCC 59.300 57.143 0.00 0.00 38.11 3.01
147 148 2.695585 AGGGTCCCTCCATAGACAATC 58.304 52.381 3.85 0.00 38.11 2.67
148 149 2.897823 AGGGTCCCTCCATAGACAAT 57.102 50.000 3.85 0.00 38.11 2.71
153 154 1.167943 TCCCTAGGGTCCCTCCATAG 58.832 60.000 27.58 6.02 46.53 2.23
154 155 0.865362 GTCCCTAGGGTCCCTCCATA 59.135 60.000 27.58 1.33 38.11 2.74
155 156 0.936863 AGTCCCTAGGGTCCCTCCAT 60.937 60.000 27.58 1.92 38.11 3.41
156 157 1.160289 AAGTCCCTAGGGTCCCTCCA 61.160 60.000 27.58 2.99 38.11 3.86
157 158 0.939698 TAAGTCCCTAGGGTCCCTCC 59.060 60.000 27.58 9.52 34.61 4.30
158 159 2.973406 CAATAAGTCCCTAGGGTCCCTC 59.027 54.545 27.58 13.28 34.61 4.30
159 160 2.321296 ACAATAAGTCCCTAGGGTCCCT 59.679 50.000 27.58 16.73 37.71 4.20
160 161 2.772930 ACAATAAGTCCCTAGGGTCCC 58.227 52.381 27.58 16.02 36.47 4.46
161 162 4.554683 ACTACAATAAGTCCCTAGGGTCC 58.445 47.826 27.58 18.49 36.47 4.46
162 163 6.556974 AAACTACAATAAGTCCCTAGGGTC 57.443 41.667 27.58 22.01 36.47 4.46
163 164 6.734281 AGAAAACTACAATAAGTCCCTAGGGT 59.266 38.462 27.58 11.29 36.47 4.34
164 165 7.196637 AGAAAACTACAATAAGTCCCTAGGG 57.803 40.000 23.22 23.22 0.00 3.53
205 206 9.120538 GGACAGATGGCTTAGATAATTTACAAA 57.879 33.333 0.00 0.00 0.00 2.83
206 207 8.494433 AGGACAGATGGCTTAGATAATTTACAA 58.506 33.333 0.00 0.00 0.00 2.41
207 208 8.034313 AGGACAGATGGCTTAGATAATTTACA 57.966 34.615 0.00 0.00 0.00 2.41
210 211 8.325046 GGATAGGACAGATGGCTTAGATAATTT 58.675 37.037 0.00 0.00 0.00 1.82
211 212 7.092668 GGGATAGGACAGATGGCTTAGATAATT 60.093 40.741 0.00 0.00 0.00 1.40
212 213 6.385467 GGGATAGGACAGATGGCTTAGATAAT 59.615 42.308 0.00 0.00 0.00 1.28
213 214 5.721960 GGGATAGGACAGATGGCTTAGATAA 59.278 44.000 0.00 0.00 0.00 1.75
214 215 5.222547 TGGGATAGGACAGATGGCTTAGATA 60.223 44.000 0.00 0.00 0.00 1.98
215 216 4.100373 GGGATAGGACAGATGGCTTAGAT 58.900 47.826 0.00 0.00 0.00 1.98
216 217 3.116746 TGGGATAGGACAGATGGCTTAGA 60.117 47.826 0.00 0.00 0.00 2.10
217 218 3.242867 TGGGATAGGACAGATGGCTTAG 58.757 50.000 0.00 0.00 0.00 2.18
218 219 3.242867 CTGGGATAGGACAGATGGCTTA 58.757 50.000 0.00 0.00 36.86 3.09
219 220 2.053244 CTGGGATAGGACAGATGGCTT 58.947 52.381 0.00 0.00 36.86 4.35
220 221 1.061812 ACTGGGATAGGACAGATGGCT 60.062 52.381 0.00 0.00 38.09 4.75
221 222 1.428869 ACTGGGATAGGACAGATGGC 58.571 55.000 0.00 0.00 38.09 4.40
222 223 4.510167 AAAACTGGGATAGGACAGATGG 57.490 45.455 0.00 0.00 38.09 3.51
223 224 5.256474 ACAAAAACTGGGATAGGACAGATG 58.744 41.667 0.00 0.00 38.09 2.90
224 225 5.520748 ACAAAAACTGGGATAGGACAGAT 57.479 39.130 0.00 0.00 38.09 2.90
225 226 4.993705 ACAAAAACTGGGATAGGACAGA 57.006 40.909 0.00 0.00 38.09 3.41
226 227 5.805728 AGTACAAAAACTGGGATAGGACAG 58.194 41.667 0.00 0.00 40.48 3.51
227 228 5.280317 GGAGTACAAAAACTGGGATAGGACA 60.280 44.000 0.00 0.00 0.00 4.02
228 229 5.183969 GGAGTACAAAAACTGGGATAGGAC 58.816 45.833 0.00 0.00 0.00 3.85
229 230 4.226620 GGGAGTACAAAAACTGGGATAGGA 59.773 45.833 0.00 0.00 0.00 2.94
230 231 4.227527 AGGGAGTACAAAAACTGGGATAGG 59.772 45.833 0.00 0.00 0.00 2.57
231 232 5.429130 GAGGGAGTACAAAAACTGGGATAG 58.571 45.833 0.00 0.00 0.00 2.08
232 233 4.226620 GGAGGGAGTACAAAAACTGGGATA 59.773 45.833 0.00 0.00 0.00 2.59
233 234 3.010250 GGAGGGAGTACAAAAACTGGGAT 59.990 47.826 0.00 0.00 0.00 3.85
234 235 2.374170 GGAGGGAGTACAAAAACTGGGA 59.626 50.000 0.00 0.00 0.00 4.37
235 236 2.791655 GGAGGGAGTACAAAAACTGGG 58.208 52.381 0.00 0.00 0.00 4.45
236 237 2.224450 ACGGAGGGAGTACAAAAACTGG 60.224 50.000 0.00 0.00 0.00 4.00
237 238 3.121738 ACGGAGGGAGTACAAAAACTG 57.878 47.619 0.00 0.00 0.00 3.16
238 239 3.851458 AACGGAGGGAGTACAAAAACT 57.149 42.857 0.00 0.00 0.00 2.66
239 240 3.878699 TGAAACGGAGGGAGTACAAAAAC 59.121 43.478 0.00 0.00 0.00 2.43
240 241 4.153673 TGAAACGGAGGGAGTACAAAAA 57.846 40.909 0.00 0.00 0.00 1.94
241 242 3.842007 TGAAACGGAGGGAGTACAAAA 57.158 42.857 0.00 0.00 0.00 2.44
242 243 3.842007 TTGAAACGGAGGGAGTACAAA 57.158 42.857 0.00 0.00 0.00 2.83
243 244 3.842007 TTTGAAACGGAGGGAGTACAA 57.158 42.857 0.00 0.00 0.00 2.41
244 245 4.360951 AATTTGAAACGGAGGGAGTACA 57.639 40.909 0.00 0.00 0.00 2.90
245 246 5.485620 AGTAATTTGAAACGGAGGGAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
246 247 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
247 248 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
248 249 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
249 250 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
250 251 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
251 252 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
252 253 3.481467 GCGACGAGTAATTTGAAACGGAG 60.481 47.826 0.00 0.00 0.00 4.63
253 254 2.409378 GCGACGAGTAATTTGAAACGGA 59.591 45.455 0.00 0.00 0.00 4.69
254 255 2.410730 AGCGACGAGTAATTTGAAACGG 59.589 45.455 0.00 0.00 0.00 4.44
255 256 3.120616 TCAGCGACGAGTAATTTGAAACG 59.879 43.478 0.00 0.00 0.00 3.60
256 257 4.640805 TCAGCGACGAGTAATTTGAAAC 57.359 40.909 0.00 0.00 0.00 2.78
257 258 5.660629 TTTCAGCGACGAGTAATTTGAAA 57.339 34.783 0.00 0.31 32.52 2.69
258 259 5.390461 CCATTTCAGCGACGAGTAATTTGAA 60.390 40.000 0.00 0.00 0.00 2.69
259 260 4.092821 CCATTTCAGCGACGAGTAATTTGA 59.907 41.667 0.00 0.00 0.00 2.69
260 261 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
261 262 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
262 263 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
263 264 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
264 265 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
265 266 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
266 267 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
267 268 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
268 269 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
269 270 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
270 271 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
271 272 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
272 273 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
273 274 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
299 300 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
300 301 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
301 302 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
302 303 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
303 304 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
304 305 4.096532 CCGCACGTATGGATGTATCTAGAT 59.903 45.833 10.73 10.73 0.00 1.98
305 306 3.439129 CCGCACGTATGGATGTATCTAGA 59.561 47.826 0.00 0.00 0.00 2.43
306 307 3.759418 CCGCACGTATGGATGTATCTAG 58.241 50.000 0.00 0.00 0.00 2.43
307 308 2.094906 GCCGCACGTATGGATGTATCTA 60.095 50.000 9.30 0.00 0.00 1.98
308 309 1.336887 GCCGCACGTATGGATGTATCT 60.337 52.381 9.30 0.00 0.00 1.98
309 310 1.068474 GCCGCACGTATGGATGTATC 58.932 55.000 9.30 0.00 0.00 2.24
310 311 0.391228 TGCCGCACGTATGGATGTAT 59.609 50.000 9.30 0.00 0.00 2.29
311 312 0.175989 TTGCCGCACGTATGGATGTA 59.824 50.000 9.30 0.00 0.00 2.29
312 313 0.675208 TTTGCCGCACGTATGGATGT 60.675 50.000 9.30 0.00 0.00 3.06
313 314 0.248054 GTTTGCCGCACGTATGGATG 60.248 55.000 9.30 0.00 0.00 3.51
314 315 0.392461 AGTTTGCCGCACGTATGGAT 60.392 50.000 9.30 0.00 0.00 3.41
315 316 0.246910 TAGTTTGCCGCACGTATGGA 59.753 50.000 9.30 0.00 0.00 3.41
316 317 1.080298 TTAGTTTGCCGCACGTATGG 58.920 50.000 0.00 0.96 0.00 2.74
317 318 2.884663 TTTAGTTTGCCGCACGTATG 57.115 45.000 0.00 0.00 0.00 2.39
318 319 4.392445 TGTATTTTAGTTTGCCGCACGTAT 59.608 37.500 0.00 0.00 0.00 3.06
319 320 3.744942 TGTATTTTAGTTTGCCGCACGTA 59.255 39.130 0.00 0.00 0.00 3.57
320 321 2.548904 TGTATTTTAGTTTGCCGCACGT 59.451 40.909 0.00 0.00 0.00 4.49
321 322 3.190314 TGTATTTTAGTTTGCCGCACG 57.810 42.857 0.00 0.00 0.00 5.34
322 323 4.981794 AGATGTATTTTAGTTTGCCGCAC 58.018 39.130 0.00 0.00 0.00 5.34
323 324 6.110033 TCTAGATGTATTTTAGTTTGCCGCA 58.890 36.000 0.00 0.00 0.00 5.69
324 325 6.598753 TCTAGATGTATTTTAGTTTGCCGC 57.401 37.500 0.00 0.00 0.00 6.53
325 326 9.256477 TGTATCTAGATGTATTTTAGTTTGCCG 57.744 33.333 15.79 0.00 0.00 5.69
336 337 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
337 338 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
338 339 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
339 340 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
340 341 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
341 342 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
342 343 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
343 344 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
344 345 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
345 346 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
346 347 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
347 348 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
348 349 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
349 350 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
350 351 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
351 352 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
352 353 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
353 354 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
354 355 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
355 356 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
356 357 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
357 358 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
358 359 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
359 360 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
360 361 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
361 362 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
362 363 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
363 364 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
364 365 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
365 366 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
366 367 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
367 368 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
368 369 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
369 370 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
370 371 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
371 372 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
372 373 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
373 374 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
374 375 0.739561 CTTCTACTCCCTCCGTTCCG 59.260 60.000 0.00 0.00 0.00 4.30
375 376 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
376 377 5.048573 GTGATATCTTCTACTCCCTCCGTTC 60.049 48.000 3.98 0.00 0.00 3.95
377 378 4.828387 GTGATATCTTCTACTCCCTCCGTT 59.172 45.833 3.98 0.00 0.00 4.44
378 379 4.141228 TGTGATATCTTCTACTCCCTCCGT 60.141 45.833 3.98 0.00 0.00 4.69
379 380 4.399219 TGTGATATCTTCTACTCCCTCCG 58.601 47.826 3.98 0.00 0.00 4.63
380 381 6.152661 CAGATGTGATATCTTCTACTCCCTCC 59.847 46.154 3.98 0.00 0.00 4.30
381 382 6.719370 ACAGATGTGATATCTTCTACTCCCTC 59.281 42.308 3.98 0.00 0.00 4.30
382 383 6.619464 ACAGATGTGATATCTTCTACTCCCT 58.381 40.000 3.98 0.00 0.00 4.20
383 384 6.909550 ACAGATGTGATATCTTCTACTCCC 57.090 41.667 3.98 0.00 0.00 4.30
384 385 9.019656 ACATACAGATGTGATATCTTCTACTCC 57.980 37.037 3.98 0.00 44.90 3.85
391 392 9.783081 TGCAAATACATACAGATGTGATATCTT 57.217 29.630 3.98 0.00 46.11 2.40
392 393 9.212641 GTGCAAATACATACAGATGTGATATCT 57.787 33.333 3.98 0.00 46.11 1.98
393 394 9.212641 AGTGCAAATACATACAGATGTGATATC 57.787 33.333 0.00 0.00 46.11 1.63
394 395 9.565090 AAGTGCAAATACATACAGATGTGATAT 57.435 29.630 0.00 0.00 46.11 1.63
395 396 8.962884 AAGTGCAAATACATACAGATGTGATA 57.037 30.769 0.00 0.00 46.11 2.15
396 397 7.870509 AAGTGCAAATACATACAGATGTGAT 57.129 32.000 0.00 0.00 46.11 3.06
397 398 7.607607 AGAAAGTGCAAATACATACAGATGTGA 59.392 33.333 0.00 0.00 46.11 3.58
398 399 7.755591 AGAAAGTGCAAATACATACAGATGTG 58.244 34.615 0.00 0.00 46.11 3.21
400 401 9.630098 AAAAGAAAGTGCAAATACATACAGATG 57.370 29.630 0.00 0.00 39.16 2.90
401 402 9.846248 GAAAAGAAAGTGCAAATACATACAGAT 57.154 29.630 0.00 0.00 0.00 2.90
402 403 9.066892 AGAAAAGAAAGTGCAAATACATACAGA 57.933 29.630 0.00 0.00 0.00 3.41
403 404 9.334693 GAGAAAAGAAAGTGCAAATACATACAG 57.665 33.333 0.00 0.00 0.00 2.74
404 405 9.066892 AGAGAAAAGAAAGTGCAAATACATACA 57.933 29.630 0.00 0.00 0.00 2.29
405 406 9.899226 AAGAGAAAAGAAAGTGCAAATACATAC 57.101 29.630 0.00 0.00 0.00 2.39
407 408 8.632679 TGAAGAGAAAAGAAAGTGCAAATACAT 58.367 29.630 0.00 0.00 0.00 2.29
408 409 7.995289 TGAAGAGAAAAGAAAGTGCAAATACA 58.005 30.769 0.00 0.00 0.00 2.29
409 410 8.856490 TTGAAGAGAAAAGAAAGTGCAAATAC 57.144 30.769 0.00 0.00 0.00 1.89
410 411 9.467258 CATTGAAGAGAAAAGAAAGTGCAAATA 57.533 29.630 0.00 0.00 0.00 1.40
411 412 7.983484 ACATTGAAGAGAAAAGAAAGTGCAAAT 59.017 29.630 0.00 0.00 0.00 2.32
412 413 7.322664 ACATTGAAGAGAAAAGAAAGTGCAAA 58.677 30.769 0.00 0.00 0.00 3.68
413 414 6.866480 ACATTGAAGAGAAAAGAAAGTGCAA 58.134 32.000 0.00 0.00 0.00 4.08
414 415 6.455360 ACATTGAAGAGAAAAGAAAGTGCA 57.545 33.333 0.00 0.00 0.00 4.57
415 416 8.856490 TTAACATTGAAGAGAAAAGAAAGTGC 57.144 30.769 0.00 0.00 0.00 4.40
443 444 9.628746 GTAGGTTTTTGTTTTAGAGAAACAACA 57.371 29.630 14.51 7.60 46.14 3.33
444 445 9.850628 AGTAGGTTTTTGTTTTAGAGAAACAAC 57.149 29.630 14.51 6.51 46.14 3.32
455 456 9.647797 CTCCAGTTTTTAGTAGGTTTTTGTTTT 57.352 29.630 0.00 0.00 0.00 2.43
456 457 8.809066 ACTCCAGTTTTTAGTAGGTTTTTGTTT 58.191 29.630 0.00 0.00 0.00 2.83
457 458 8.357290 ACTCCAGTTTTTAGTAGGTTTTTGTT 57.643 30.769 0.00 0.00 0.00 2.83
458 459 7.612633 TGACTCCAGTTTTTAGTAGGTTTTTGT 59.387 33.333 0.00 0.00 0.00 2.83
459 460 7.913821 GTGACTCCAGTTTTTAGTAGGTTTTTG 59.086 37.037 0.00 0.00 0.00 2.44
460 461 7.067859 GGTGACTCCAGTTTTTAGTAGGTTTTT 59.932 37.037 0.00 0.00 35.97 1.94
461 462 6.544931 GGTGACTCCAGTTTTTAGTAGGTTTT 59.455 38.462 0.00 0.00 35.97 2.43
462 463 6.060136 GGTGACTCCAGTTTTTAGTAGGTTT 58.940 40.000 0.00 0.00 35.97 3.27
463 464 5.131475 TGGTGACTCCAGTTTTTAGTAGGTT 59.869 40.000 0.00 0.00 41.93 3.50
464 465 4.657039 TGGTGACTCCAGTTTTTAGTAGGT 59.343 41.667 0.00 0.00 41.93 3.08
465 466 5.223449 TGGTGACTCCAGTTTTTAGTAGG 57.777 43.478 0.00 0.00 41.93 3.18
477 478 1.594833 GGCGTATGTGGTGACTCCA 59.405 57.895 0.00 0.00 45.01 3.86
478 479 1.153429 GGGCGTATGTGGTGACTCC 60.153 63.158 0.00 0.00 0.00 3.85
479 480 1.153429 GGGGCGTATGTGGTGACTC 60.153 63.158 0.00 0.00 0.00 3.36
480 481 2.666098 GGGGGCGTATGTGGTGACT 61.666 63.158 0.00 0.00 0.00 3.41
481 482 2.124860 GGGGGCGTATGTGGTGAC 60.125 66.667 0.00 0.00 0.00 3.67
482 483 2.224877 TTGGGGGCGTATGTGGTGA 61.225 57.895 0.00 0.00 0.00 4.02
483 484 2.043980 GTTGGGGGCGTATGTGGTG 61.044 63.158 0.00 0.00 0.00 4.17
484 485 2.353573 GTTGGGGGCGTATGTGGT 59.646 61.111 0.00 0.00 0.00 4.16
485 486 2.439519 GGTTGGGGGCGTATGTGG 60.440 66.667 0.00 0.00 0.00 4.17
486 487 1.748879 CTGGTTGGGGGCGTATGTG 60.749 63.158 0.00 0.00 0.00 3.21
487 488 2.193087 GACTGGTTGGGGGCGTATGT 62.193 60.000 0.00 0.00 0.00 2.29
488 489 1.451387 GACTGGTTGGGGGCGTATG 60.451 63.158 0.00 0.00 0.00 2.39
489 490 1.615424 AGACTGGTTGGGGGCGTAT 60.615 57.895 0.00 0.00 0.00 3.06
490 491 2.203877 AGACTGGTTGGGGGCGTA 60.204 61.111 0.00 0.00 0.00 4.42
491 492 3.953775 CAGACTGGTTGGGGGCGT 61.954 66.667 0.00 0.00 0.00 5.68
492 493 3.491598 AACAGACTGGTTGGGGGCG 62.492 63.158 7.51 0.00 0.00 6.13
493 494 1.603739 GAACAGACTGGTTGGGGGC 60.604 63.158 7.51 0.00 0.00 5.80
494 495 0.184933 TTGAACAGACTGGTTGGGGG 59.815 55.000 7.51 0.00 0.00 5.40
495 496 2.065899 TTTGAACAGACTGGTTGGGG 57.934 50.000 7.51 0.00 0.00 4.96
496 497 2.958355 ACATTTGAACAGACTGGTTGGG 59.042 45.455 7.51 0.00 0.00 4.12
497 498 4.610945 GAACATTTGAACAGACTGGTTGG 58.389 43.478 7.51 0.00 0.00 3.77
498 499 4.282068 CGAACATTTGAACAGACTGGTTG 58.718 43.478 7.51 0.00 0.00 3.77
499 500 3.243068 GCGAACATTTGAACAGACTGGTT 60.243 43.478 7.51 0.00 0.00 3.67
500 501 2.290641 GCGAACATTTGAACAGACTGGT 59.709 45.455 7.51 0.00 0.00 4.00
501 502 2.350772 GGCGAACATTTGAACAGACTGG 60.351 50.000 7.51 0.00 0.00 4.00
502 503 2.549754 AGGCGAACATTTGAACAGACTG 59.450 45.455 0.00 0.00 0.00 3.51
503 504 2.851195 AGGCGAACATTTGAACAGACT 58.149 42.857 0.00 0.00 0.00 3.24
504 505 3.423123 CGTAGGCGAACATTTGAACAGAC 60.423 47.826 0.00 0.00 41.33 3.51
505 506 2.734606 CGTAGGCGAACATTTGAACAGA 59.265 45.455 0.00 0.00 41.33 3.41
506 507 2.478894 ACGTAGGCGAACATTTGAACAG 59.521 45.455 0.00 0.00 42.00 3.16
507 508 2.222213 CACGTAGGCGAACATTTGAACA 59.778 45.455 0.00 0.00 42.00 3.18
508 509 2.412325 CCACGTAGGCGAACATTTGAAC 60.412 50.000 0.00 0.00 42.00 3.18
509 510 1.801771 CCACGTAGGCGAACATTTGAA 59.198 47.619 0.00 0.00 42.00 2.69
510 511 1.434555 CCACGTAGGCGAACATTTGA 58.565 50.000 0.00 0.00 42.00 2.69
511 512 3.967734 CCACGTAGGCGAACATTTG 57.032 52.632 0.00 0.00 42.00 2.32
534 535 7.896274 CACAGACGTATTATTTTTGAGGTTACG 59.104 37.037 0.00 0.00 37.54 3.18
535 536 8.173130 CCACAGACGTATTATTTTTGAGGTTAC 58.827 37.037 0.00 0.00 0.00 2.50
545 546 4.776349 TGATGCCCACAGACGTATTATTT 58.224 39.130 0.00 0.00 0.00 1.40
556 557 5.614308 TGATAAGAACTATGATGCCCACAG 58.386 41.667 0.00 0.00 0.00 3.66
572 573 7.129457 AGCTCATGTACAGGATTTGATAAGA 57.871 36.000 11.14 0.00 0.00 2.10
582 583 1.204704 CCACGAAGCTCATGTACAGGA 59.795 52.381 10.21 10.21 0.00 3.86
588 589 2.009774 GTTATGCCACGAAGCTCATGT 58.990 47.619 0.00 0.00 0.00 3.21
628 629 0.888736 GTGTGCCGGCCATATGCATA 60.889 55.000 26.77 9.27 43.89 3.14
634 635 0.973496 TGTAGAGTGTGCCGGCCATA 60.973 55.000 26.77 7.20 0.00 2.74
673 674 9.959721 ACACATCACTTTTCTTAGGTTACATAT 57.040 29.630 0.00 0.00 0.00 1.78
675 676 8.691661 AACACATCACTTTTCTTAGGTTACAT 57.308 30.769 0.00 0.00 0.00 2.29
676 677 7.771361 TGAACACATCACTTTTCTTAGGTTACA 59.229 33.333 0.00 0.00 31.50 2.41
677 678 8.149973 TGAACACATCACTTTTCTTAGGTTAC 57.850 34.615 0.00 0.00 31.50 2.50
691 718 6.371809 TTCCTTGTAAACTGAACACATCAC 57.628 37.500 0.00 0.00 33.47 3.06
725 752 3.815401 TGCTCTGTTTTAGCCTTGTCTTC 59.185 43.478 0.00 0.00 39.30 2.87
740 768 2.831685 TGGATGTTTACGTGCTCTGT 57.168 45.000 0.00 0.00 0.00 3.41
782 810 4.298332 CTCATTTGGTTGTCCTTTTTCCG 58.702 43.478 0.00 0.00 34.23 4.30
802 833 1.322442 AGCCTTTGTCTTTGGTGCTC 58.678 50.000 0.00 0.00 0.00 4.26
803 834 2.656947 TAGCCTTTGTCTTTGGTGCT 57.343 45.000 0.00 0.00 0.00 4.40
839 870 3.131396 GTTCACTCGAGTTCCATTGTGT 58.869 45.455 17.26 0.00 0.00 3.72
914 945 4.657436 ATATCGTTGTCTCTTGTCCTCC 57.343 45.455 0.00 0.00 0.00 4.30
1902 1951 4.595538 GCCGTGGTGGTGTCGTGA 62.596 66.667 0.00 0.00 41.21 4.35
1923 1972 1.739562 CTTGACGAGCCAGGTCAGC 60.740 63.158 0.00 0.00 44.47 4.26
2178 2227 1.954146 CACCACGTCCAGGTTCACG 60.954 63.158 0.00 0.00 37.23 4.35
2339 2400 1.644509 TCAGCGTCCCCTGCATATAT 58.355 50.000 0.00 0.00 32.87 0.86
2343 2404 2.270205 CTTCAGCGTCCCCTGCAT 59.730 61.111 0.00 0.00 32.87 3.96
2344 2405 4.704833 GCTTCAGCGTCCCCTGCA 62.705 66.667 0.00 0.00 32.87 4.41
2352 2413 2.432628 GCTGTACGGCTTCAGCGT 60.433 61.111 19.72 0.00 45.42 5.07
2393 2454 3.492353 ATCCCTGGGCACATCCGG 61.492 66.667 8.22 0.00 34.94 5.14
2453 2514 3.425758 CGACTTACTCGTATGTGCAGACA 60.426 47.826 0.00 0.00 37.64 3.41
2525 2597 1.311859 TCCAGCTGCACAGAAAACAG 58.688 50.000 8.66 0.00 34.48 3.16
2663 2759 2.680352 TGGGGTCAGAGCGAGTCC 60.680 66.667 0.00 0.00 0.00 3.85
2665 2761 3.386237 GCTGGGGTCAGAGCGAGT 61.386 66.667 0.00 0.00 43.49 4.18
2699 2818 1.269517 TGCTGAAAACAAATGTCGGCC 60.270 47.619 0.00 0.00 41.99 6.13
2701 2820 3.426191 CACATGCTGAAAACAAATGTCGG 59.574 43.478 0.00 0.00 29.20 4.79
2735 2854 1.205655 TGACAGCATCAGTAGAGTGCC 59.794 52.381 0.00 0.00 39.62 5.01
2771 2892 5.028549 ACAAGTAGCCTCAAGATACCATG 57.971 43.478 0.00 0.00 0.00 3.66
2803 2924 7.312899 ACAAGTAAAGTTTGCATATAGTTGGC 58.687 34.615 6.47 0.00 33.34 4.52
2830 2951 3.503363 TGATTGCTGGTTTCACTTGCTAG 59.497 43.478 0.00 0.00 0.00 3.42
2858 2979 4.158579 TGTGTGTGGAATTGTTGTGCTAAA 59.841 37.500 0.00 0.00 0.00 1.85
2863 2984 5.009510 TCCTTATGTGTGTGGAATTGTTGTG 59.990 40.000 0.00 0.00 0.00 3.33
3015 3140 4.392940 AGTTTACATGGCCATCAGATAGC 58.607 43.478 17.61 3.23 0.00 2.97
3056 3181 5.100259 CAGGTTCCGTTAGTATGTAGTGTG 58.900 45.833 0.00 0.00 0.00 3.82
3092 3217 2.542411 GCTATCCTTCTTTGGCAATGCG 60.542 50.000 0.00 0.00 0.00 4.73
3108 3233 2.827800 TGCTCAGCTACATGGCTATC 57.172 50.000 0.00 0.00 41.00 2.08
3116 3241 4.202253 ACATCGGAATAATGCTCAGCTACA 60.202 41.667 0.00 0.00 0.00 2.74
3123 3250 3.750130 AGATGCACATCGGAATAATGCTC 59.250 43.478 5.04 0.00 42.48 4.26
3134 3261 1.298638 TCGCGAGAGATGCACATCG 60.299 57.895 3.71 0.00 42.48 3.84
3139 3266 1.514228 GTTCGTCGCGAGAGATGCA 60.514 57.895 10.24 0.00 43.49 3.96
3160 3287 1.069823 CTAGAGATGCATCGTTGGGCT 59.930 52.381 20.67 13.72 0.00 5.19
3167 3294 0.235926 TCGTCGCTAGAGATGCATCG 59.764 55.000 20.67 8.90 0.00 3.84
3284 3411 2.978010 CCTGTTCGCCGGCTTTGT 60.978 61.111 26.68 0.00 0.00 2.83
3293 3420 4.056125 GCCTTTGCCCCTGTTCGC 62.056 66.667 0.00 0.00 0.00 4.70
3295 3422 1.398958 TTGTGCCTTTGCCCCTGTTC 61.399 55.000 0.00 0.00 36.33 3.18
3301 3428 1.079612 GATGCTTGTGCCTTTGCCC 60.080 57.895 0.00 0.00 38.71 5.36
3314 3441 2.429610 CAGCCTGCCTAAAAATGATGCT 59.570 45.455 0.00 0.00 0.00 3.79
3315 3442 2.817901 CAGCCTGCCTAAAAATGATGC 58.182 47.619 0.00 0.00 0.00 3.91
3317 3444 2.429610 CTGCAGCCTGCCTAAAAATGAT 59.570 45.455 15.29 0.00 44.23 2.45
3318 3445 1.820519 CTGCAGCCTGCCTAAAAATGA 59.179 47.619 15.29 0.00 44.23 2.57
3399 3527 6.019318 CGTTGTTGTCTAATAATAACCGAGGG 60.019 42.308 0.00 0.00 0.00 4.30
3404 3532 7.550196 TCCTTCCGTTGTTGTCTAATAATAACC 59.450 37.037 0.00 0.00 0.00 2.85
3407 3535 8.533657 TCTTCCTTCCGTTGTTGTCTAATAATA 58.466 33.333 0.00 0.00 0.00 0.98
3452 3580 5.238432 CCTTTTGGGTTGCTTATTTTGTTCC 59.762 40.000 0.00 0.00 35.46 3.62
3516 3644 5.136828 TGCTCTGTTTTTGGGATTGAGTTA 58.863 37.500 0.00 0.00 0.00 2.24
3526 3654 5.835257 TCTCTTTCAATGCTCTGTTTTTGG 58.165 37.500 0.00 0.00 0.00 3.28
3606 3735 9.598517 ACTAAACTTTGCTTGAAAAATTCATCA 57.401 25.926 0.00 0.00 39.84 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.