Multiple sequence alignment - TraesCS5B01G516100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G516100 chr5B 100.000 4596 0 0 1001 5596 680362407 680357812 0.000000e+00 8488.0
1 TraesCS5B01G516100 chr5B 100.000 624 0 0 1 624 680363407 680362784 0.000000e+00 1153.0
2 TraesCS5B01G516100 chr5B 92.157 510 36 3 4995 5502 710360417 710360924 0.000000e+00 717.0
3 TraesCS5B01G516100 chr5B 91.945 509 36 5 4993 5500 479023255 479023759 0.000000e+00 708.0
4 TraesCS5B01G516100 chr5B 84.615 195 28 2 289 482 698451629 698451436 5.720000e-45 193.0
5 TraesCS5B01G516100 chr5B 94.444 72 4 0 5525 5596 360864553 360864624 1.650000e-20 111.0
6 TraesCS5B01G516100 chr5B 94.444 72 4 0 5525 5596 710361251 710361322 1.650000e-20 111.0
7 TraesCS5B01G516100 chr4A 93.719 2595 83 32 2241 4802 629858372 629860919 0.000000e+00 3816.0
8 TraesCS5B01G516100 chr4A 81.779 933 90 38 1001 1892 629857258 629858151 0.000000e+00 708.0
9 TraesCS5B01G516100 chr4A 78.654 520 80 10 1 495 629856393 629856906 3.250000e-82 316.0
10 TraesCS5B01G516100 chr4A 100.000 147 0 0 2095 2241 229490477 229490623 7.140000e-69 272.0
11 TraesCS5B01G516100 chr4A 89.744 195 13 5 1901 2092 629858190 629858380 5.600000e-60 243.0
12 TraesCS5B01G516100 chr4A 95.652 138 6 0 2097 2234 490918708 490918571 7.300000e-54 222.0
13 TraesCS5B01G516100 chr4A 95.000 140 7 0 2095 2234 599465904 599465765 2.620000e-53 220.0
14 TraesCS5B01G516100 chr4A 95.000 140 7 0 2095 2234 631579825 631579964 2.620000e-53 220.0
15 TraesCS5B01G516100 chr5D 94.028 1959 57 25 2241 4194 538790278 538788375 0.000000e+00 2915.0
16 TraesCS5B01G516100 chr5D 87.713 879 64 19 1001 1861 538791501 538790649 0.000000e+00 985.0
17 TraesCS5B01G516100 chr5D 84.355 620 96 1 3377 3995 388878 388259 1.720000e-169 606.0
18 TraesCS5B01G516100 chr5D 85.072 623 35 26 4179 4771 538788363 538787769 2.910000e-162 582.0
19 TraesCS5B01G516100 chr5D 81.279 641 73 21 1 624 538792326 538791716 5.070000e-130 475.0
20 TraesCS5B01G516100 chr5D 96.809 94 3 0 1999 2092 538790363 538790270 2.090000e-34 158.0
21 TraesCS5B01G516100 chr5D 88.298 94 4 5 1966 2056 538790473 538790384 7.670000e-19 106.0
22 TraesCS5B01G516100 chr5D 100.000 54 0 0 2003 2056 538790398 538790345 3.570000e-17 100.0
23 TraesCS5B01G516100 chr5D 95.122 41 2 0 2406 2446 538790652 538790612 1.300000e-06 65.8
24 TraesCS5B01G516100 chr4B 92.955 511 30 6 4992 5500 377799836 377799330 0.000000e+00 739.0
25 TraesCS5B01G516100 chr4B 94.444 72 4 0 5525 5596 52928977 52929048 1.650000e-20 111.0
26 TraesCS5B01G516100 chr4B 94.444 72 4 0 5525 5596 377799000 377798929 1.650000e-20 111.0
27 TraesCS5B01G516100 chr4B 93.056 72 5 0 5525 5596 660167596 660167667 7.670000e-19 106.0
28 TraesCS5B01G516100 chr4B 93.056 72 5 0 5525 5596 665608228 665608157 7.670000e-19 106.0
29 TraesCS5B01G516100 chr5A 79.001 1081 212 15 2919 3995 228191 229260 0.000000e+00 725.0
30 TraesCS5B01G516100 chr5A 84.194 620 97 1 3377 3995 229718 230337 8.020000e-168 601.0
31 TraesCS5B01G516100 chr5A 100.000 148 0 0 2095 2242 523616859 523617006 1.990000e-69 274.0
32 TraesCS5B01G516100 chr2D 92.353 510 35 4 4992 5500 520039141 520039647 0.000000e+00 723.0
33 TraesCS5B01G516100 chr2B 92.079 505 39 1 4996 5500 406113735 406114238 0.000000e+00 710.0
34 TraesCS5B01G516100 chr2B 91.881 505 37 3 4997 5500 665368969 665368468 0.000000e+00 702.0
35 TraesCS5B01G516100 chr2B 90.892 527 39 9 4980 5502 84086185 84086706 0.000000e+00 699.0
36 TraesCS5B01G516100 chr2B 85.128 195 27 2 289 482 389457188 389456995 1.230000e-46 198.0
37 TraesCS5B01G516100 chr3B 91.473 516 41 3 4985 5500 800070674 800070162 0.000000e+00 706.0
38 TraesCS5B01G516100 chr7B 91.765 510 37 5 4991 5500 614866921 614866417 0.000000e+00 704.0
39 TraesCS5B01G516100 chr7B 94.444 72 4 0 5525 5596 721415104 721415033 1.650000e-20 111.0
40 TraesCS5B01G516100 chr7B 81.944 72 11 2 497 567 80519016 80518946 6.050000e-05 60.2
41 TraesCS5B01G516100 chr1A 86.190 630 86 1 3377 4005 10068027 10068656 0.000000e+00 680.0
42 TraesCS5B01G516100 chr1A 83.942 411 65 1 2886 3296 10067342 10067751 5.260000e-105 392.0
43 TraesCS5B01G516100 chr1A 79.856 278 50 3 290 567 21407985 21408256 1.230000e-46 198.0
44 TraesCS5B01G516100 chr1B 84.839 620 92 2 3380 3998 360808768 360809386 1.710000e-174 623.0
45 TraesCS5B01G516100 chr1B 84.750 400 61 0 2886 3285 11858381 11858780 8.730000e-108 401.0
46 TraesCS5B01G516100 chr1B 85.417 192 26 2 289 479 340473346 340473536 1.230000e-46 198.0
47 TraesCS5B01G516100 chr1B 84.615 195 28 2 289 482 635509540 635509347 5.720000e-45 193.0
48 TraesCS5B01G516100 chr1B 93.056 72 5 0 5525 5596 57502749 57502678 7.670000e-19 106.0
49 TraesCS5B01G516100 chr1D 84.355 620 95 2 3380 3998 252528696 252528078 1.720000e-169 606.0
50 TraesCS5B01G516100 chr1D 84.878 410 61 1 2886 3295 8712948 8713356 4.030000e-111 412.0
51 TraesCS5B01G516100 chrUn 84.194 620 97 1 3377 3995 454677304 454676685 8.020000e-168 601.0
52 TraesCS5B01G516100 chr3D 100.000 146 0 0 2095 2240 175658317 175658172 2.570000e-68 270.0
53 TraesCS5B01G516100 chr3D 95.000 140 7 0 2095 2234 275613688 275613549 2.620000e-53 220.0
54 TraesCS5B01G516100 chr3D 79.365 252 49 2 290 541 98940426 98940178 2.070000e-39 174.0
55 TraesCS5B01G516100 chr6B 96.429 140 5 0 2095 2234 493062587 493062726 1.210000e-56 231.0
56 TraesCS5B01G516100 chr6B 84.896 192 27 2 289 479 551769958 551770148 5.720000e-45 193.0
57 TraesCS5B01G516100 chr6B 84.615 195 28 2 289 482 634640586 634640393 5.720000e-45 193.0
58 TraesCS5B01G516100 chr6B 77.348 181 36 4 289 467 145548187 145548364 9.920000e-18 102.0
59 TraesCS5B01G516100 chr7A 95.000 140 7 0 2095 2234 516497896 516497757 2.620000e-53 220.0
60 TraesCS5B01G516100 chr2A 83.920 199 30 2 285 482 43004491 43004294 7.400000e-44 189.0
61 TraesCS5B01G516100 chr6A 93.056 72 5 0 5525 5596 572408579 572408508 7.670000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G516100 chr5B 680357812 680363407 5595 True 4820.50 8488 100.000000 1 5596 2 chr5B.!!$R2 5595
1 TraesCS5B01G516100 chr5B 479023255 479023759 504 False 708.00 708 91.945000 4993 5500 1 chr5B.!!$F2 507
2 TraesCS5B01G516100 chr5B 710360417 710361322 905 False 414.00 717 93.300500 4995 5596 2 chr5B.!!$F3 601
3 TraesCS5B01G516100 chr4A 629856393 629860919 4526 False 1270.75 3816 85.974000 1 4802 4 chr4A.!!$F3 4801
4 TraesCS5B01G516100 chr5D 538787769 538792326 4557 True 673.35 2915 91.040125 1 4771 8 chr5D.!!$R2 4770
5 TraesCS5B01G516100 chr5D 388259 388878 619 True 606.00 606 84.355000 3377 3995 1 chr5D.!!$R1 618
6 TraesCS5B01G516100 chr4B 377798929 377799836 907 True 425.00 739 93.699500 4992 5596 2 chr4B.!!$R2 604
7 TraesCS5B01G516100 chr5A 228191 230337 2146 False 663.00 725 81.597500 2919 3995 2 chr5A.!!$F2 1076
8 TraesCS5B01G516100 chr2D 520039141 520039647 506 False 723.00 723 92.353000 4992 5500 1 chr2D.!!$F1 508
9 TraesCS5B01G516100 chr2B 406113735 406114238 503 False 710.00 710 92.079000 4996 5500 1 chr2B.!!$F2 504
10 TraesCS5B01G516100 chr2B 665368468 665368969 501 True 702.00 702 91.881000 4997 5500 1 chr2B.!!$R2 503
11 TraesCS5B01G516100 chr2B 84086185 84086706 521 False 699.00 699 90.892000 4980 5502 1 chr2B.!!$F1 522
12 TraesCS5B01G516100 chr3B 800070162 800070674 512 True 706.00 706 91.473000 4985 5500 1 chr3B.!!$R1 515
13 TraesCS5B01G516100 chr7B 614866417 614866921 504 True 704.00 704 91.765000 4991 5500 1 chr7B.!!$R2 509
14 TraesCS5B01G516100 chr1A 10067342 10068656 1314 False 536.00 680 85.066000 2886 4005 2 chr1A.!!$F2 1119
15 TraesCS5B01G516100 chr1B 360808768 360809386 618 False 623.00 623 84.839000 3380 3998 1 chr1B.!!$F3 618
16 TraesCS5B01G516100 chr1D 252528078 252528696 618 True 606.00 606 84.355000 3380 3998 1 chr1D.!!$R1 618
17 TraesCS5B01G516100 chrUn 454676685 454677304 619 True 601.00 601 84.194000 3377 3995 1 chrUn.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 123 0.098728 CCTATTTTCTGTTGGCGGCG 59.901 55.0 0.51 0.51 0.00 6.46 F
1415 1492 0.396811 AGTGTCCAAGTGGTGTAGCC 59.603 55.0 0.00 0.00 36.34 3.93 F
2166 2456 0.031994 ACGGTGCATCCAGTTTTTGC 59.968 50.0 0.00 0.00 36.91 3.68 F
2206 2496 0.250252 TGTGCTGCATCGTCCAAAGA 60.250 50.0 5.27 0.00 0.00 2.52 F
4034 4530 0.026544 TTTTGTTTCGTCGTCGTGGC 59.973 50.0 1.33 0.00 38.33 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2162 0.035317 ACGAGTCATGGAGCTGCAAA 59.965 50.0 13.45 0.0 0.00 3.68 R
2735 3037 1.028330 CGTCAGCCATTGGTCTGCAT 61.028 55.0 17.31 0.0 30.75 3.96 R
3895 4391 0.538584 TGATCTTCATGCTGCTCGGT 59.461 50.0 0.00 0.0 0.00 4.69 R
4202 4698 1.361204 TCCACATCTGCCAAAGGAGA 58.639 50.0 0.00 0.0 0.00 3.71 R
4864 5416 0.038159 CTGCCCTCGACGAGTTTCTT 60.038 55.0 22.61 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.353103 CTGCATCGGCGATTGAACC 59.647 57.895 21.54 6.95 45.35 3.62
39 40 1.852067 GCGATTGAACCAACGGCACT 61.852 55.000 0.00 0.00 0.00 4.40
59 60 3.428282 CCGGGCCACACGCTTTAC 61.428 66.667 4.39 0.00 37.74 2.01
61 62 2.281900 GGGCCACACGCTTTACCA 60.282 61.111 4.39 0.00 37.74 3.25
69 83 1.134340 ACACGCTTTACCAAGTGACCA 60.134 47.619 2.61 0.00 42.36 4.02
72 86 2.038557 ACGCTTTACCAAGTGACCATCT 59.961 45.455 2.61 0.00 42.36 2.90
73 87 2.416547 CGCTTTACCAAGTGACCATCTG 59.583 50.000 0.00 0.00 42.36 2.90
74 88 3.412386 GCTTTACCAAGTGACCATCTGT 58.588 45.455 0.00 0.00 31.86 3.41
103 117 6.884280 AAGTGTCCTTCCTATTTTCTGTTG 57.116 37.500 0.00 0.00 0.00 3.33
109 123 0.098728 CCTATTTTCTGTTGGCGGCG 59.901 55.000 0.51 0.51 0.00 6.46
131 145 4.332637 GTGCTGCGTGCCACCAAG 62.333 66.667 0.00 0.00 42.00 3.61
166 180 1.442184 GCGTGACACGACAGACGAT 60.442 57.895 31.08 0.00 46.05 3.73
172 186 2.488153 TGACACGACAGACGATCATCTT 59.512 45.455 0.00 0.00 45.77 2.40
186 200 2.456577 TCATCTTGATCGACCCTGTCA 58.543 47.619 0.00 0.00 32.09 3.58
197 211 2.665000 CCTGTCACGGCACTGGAT 59.335 61.111 6.17 0.00 37.53 3.41
223 237 3.708563 AACGGTGTTGGATGACAAAAG 57.291 42.857 0.00 0.00 41.58 2.27
227 241 3.756434 CGGTGTTGGATGACAAAAGGTAT 59.244 43.478 0.00 0.00 41.58 2.73
232 246 2.841266 TGGATGACAAAAGGTATCCGGA 59.159 45.455 6.61 6.61 41.54 5.14
259 273 3.408150 GCTTTCTTGACATTTACGAGCG 58.592 45.455 0.00 0.00 0.00 5.03
315 342 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
331 358 1.202533 GCACACACGCATACCCTATCT 60.203 52.381 0.00 0.00 0.00 1.98
341 368 4.340666 CGCATACCCTATCTCTATGAGCAT 59.659 45.833 0.00 0.00 0.00 3.79
352 379 3.673902 TCTATGAGCATCTCCGAGAGAG 58.326 50.000 4.07 0.57 42.26 3.20
354 381 3.500448 ATGAGCATCTCCGAGAGAGTA 57.500 47.619 4.07 0.00 42.26 2.59
358 385 1.953686 GCATCTCCGAGAGAGTAAGCT 59.046 52.381 4.07 0.00 42.26 3.74
364 391 1.537776 CCGAGAGAGTAAGCTGGCATG 60.538 57.143 0.00 0.00 0.00 4.06
390 417 6.091441 GCATCTTGAGATTTTACGAAGTCACT 59.909 38.462 0.00 0.00 35.39 3.41
397 424 4.325028 TTTTACGAAGTCACTACAGGCA 57.675 40.909 0.00 0.00 43.93 4.75
404 431 2.507102 CACTACAGGCACCTCGCG 60.507 66.667 0.00 0.00 43.84 5.87
440 467 2.536761 TCTCCCGTTGAACGAACATT 57.463 45.000 20.47 0.00 46.05 2.71
479 506 2.136298 TCCAAGAATAATGCGGGCAA 57.864 45.000 0.00 0.00 0.00 4.52
491 518 2.505405 TGCGGGCAACAATGTAAAGTA 58.495 42.857 0.00 0.00 39.74 2.24
520 547 8.140628 GTCTATGATTTGAACTCTGATGAGCTA 58.859 37.037 0.00 0.00 43.85 3.32
543 572 2.425102 GGATACCACTGTCCTCCTAGCT 60.425 54.545 0.00 0.00 0.00 3.32
563 592 8.037758 CCTAGCTATCCAACTATAGATTGGTTG 58.962 40.741 22.62 17.23 45.83 3.77
613 648 6.500684 TGCCATAAGAGAAAGTTGTGATTC 57.499 37.500 0.00 0.00 0.00 2.52
615 650 6.660521 TGCCATAAGAGAAAGTTGTGATTCAT 59.339 34.615 0.00 0.00 0.00 2.57
1302 1372 1.586541 GGCTGCTGGTTTGGTTAGC 59.413 57.895 0.00 0.00 37.93 3.09
1304 1374 1.875963 CTGCTGGTTTGGTTAGCCG 59.124 57.895 0.00 0.00 36.64 5.52
1323 1393 2.751436 TGCGAAATGGCTGCTCCC 60.751 61.111 0.00 0.00 0.00 4.30
1333 1403 2.269241 CTGCTCCCCCTTCGGTTC 59.731 66.667 0.00 0.00 0.00 3.62
1336 1406 1.688187 GCTCCCCCTTCGGTTCCTA 60.688 63.158 0.00 0.00 0.00 2.94
1408 1485 2.483876 CAGTACACAGTGTCCAAGTGG 58.516 52.381 10.23 0.00 37.58 4.00
1410 1487 2.158957 AGTACACAGTGTCCAAGTGGTG 60.159 50.000 10.23 0.00 37.58 4.17
1415 1492 0.396811 AGTGTCCAAGTGGTGTAGCC 59.603 55.000 0.00 0.00 36.34 3.93
1419 1496 2.092103 TGTCCAAGTGGTGTAGCCTTTT 60.092 45.455 0.00 0.00 38.35 2.27
1421 1498 1.886542 CCAAGTGGTGTAGCCTTTTCC 59.113 52.381 0.00 0.00 38.35 3.13
1422 1499 2.489073 CCAAGTGGTGTAGCCTTTTCCT 60.489 50.000 0.00 0.00 38.35 3.36
1423 1500 3.222603 CAAGTGGTGTAGCCTTTTCCTT 58.777 45.455 0.00 0.00 38.35 3.36
1424 1501 3.595190 AGTGGTGTAGCCTTTTCCTTT 57.405 42.857 0.00 0.00 38.35 3.11
1425 1502 3.222603 AGTGGTGTAGCCTTTTCCTTTG 58.777 45.455 0.00 0.00 38.35 2.77
1426 1503 1.960689 TGGTGTAGCCTTTTCCTTTGC 59.039 47.619 0.00 0.00 38.35 3.68
1432 1509 0.945743 GCCTTTTCCTTTGCTTGGCG 60.946 55.000 0.00 0.00 0.00 5.69
1461 1538 0.953003 CTGCTAGGCTACCGGAGTAC 59.047 60.000 9.46 0.00 0.00 2.73
1500 1587 1.325476 GCTTGCTTGATCCAAGGGGG 61.325 60.000 10.88 0.00 41.31 5.40
1578 1665 3.827008 TCTGTGTAAGATGAGATGGCC 57.173 47.619 0.00 0.00 0.00 5.36
1579 1666 3.106827 TCTGTGTAAGATGAGATGGCCA 58.893 45.455 8.56 8.56 0.00 5.36
1623 1710 8.583810 TCTAAAATAAATCTCACCCGAATACG 57.416 34.615 0.00 0.00 39.43 3.06
1714 1808 4.872691 GTGCAGTCTAAATGCTAGATGTGT 59.127 41.667 0.00 0.00 44.17 3.72
1715 1809 4.872124 TGCAGTCTAAATGCTAGATGTGTG 59.128 41.667 0.00 0.00 44.17 3.82
1734 1828 4.633126 GTGTGCACATCATCATTCTACTGT 59.367 41.667 24.69 0.00 0.00 3.55
1735 1829 5.812127 GTGTGCACATCATCATTCTACTGTA 59.188 40.000 24.69 0.00 0.00 2.74
1736 1830 6.313658 GTGTGCACATCATCATTCTACTGTAA 59.686 38.462 24.69 0.00 0.00 2.41
1737 1831 7.011763 GTGTGCACATCATCATTCTACTGTAAT 59.988 37.037 24.69 0.00 0.00 1.89
1775 1874 7.474190 TGCTATGTATGATGTTTGATTGTGTG 58.526 34.615 0.00 0.00 0.00 3.82
1815 1914 8.325787 TGGTCTTACAATGGTTCATGTATTACT 58.674 33.333 0.00 0.00 0.00 2.24
1841 1940 7.593273 TGAACACACCAATTTTTAGCTTAATCG 59.407 33.333 0.00 0.00 0.00 3.34
1847 1946 9.659830 CACCAATTTTTAGCTTAATCGGTATAC 57.340 33.333 0.00 0.00 0.00 1.47
1853 1952 6.964807 TTAGCTTAATCGGTATACCTGTCA 57.035 37.500 19.68 1.56 0.00 3.58
1855 1954 3.988517 GCTTAATCGGTATACCTGTCAGC 59.011 47.826 19.68 15.09 0.00 4.26
1892 2068 9.883142 TCACATCATATCATAATGGCGTTAATA 57.117 29.630 2.82 0.00 0.00 0.98
1894 2070 8.830580 ACATCATATCATAATGGCGTTAATAGC 58.169 33.333 2.82 0.00 0.00 2.97
1895 2071 9.049523 CATCATATCATAATGGCGTTAATAGCT 57.950 33.333 2.82 0.00 34.52 3.32
1896 2072 8.648557 TCATATCATAATGGCGTTAATAGCTC 57.351 34.615 2.82 0.00 34.52 4.09
1905 2118 4.279922 TGGCGTTAATAGCTCAGCATAGTA 59.720 41.667 0.00 0.00 34.52 1.82
1939 2152 1.530013 AATTCCACCACTGCTGCTGC 61.530 55.000 8.89 8.89 40.20 5.25
1949 2162 2.360852 GCTGCTGCCACATGGACT 60.361 61.111 3.85 0.00 37.39 3.85
1960 2173 0.111061 ACATGGACTTTGCAGCTCCA 59.889 50.000 10.54 10.54 35.76 3.86
1962 2175 1.134367 CATGGACTTTGCAGCTCCATG 59.866 52.381 24.06 24.06 44.01 3.66
1964 2177 0.807496 GGACTTTGCAGCTCCATGAC 59.193 55.000 0.00 0.00 0.00 3.06
1983 2196 6.092670 CCATGACTCGTGTTTGATGACTAAAT 59.907 38.462 0.00 0.00 0.00 1.40
1986 2199 8.771920 TGACTCGTGTTTGATGACTAAATATT 57.228 30.769 0.00 0.00 0.00 1.28
1987 2200 8.655970 TGACTCGTGTTTGATGACTAAATATTG 58.344 33.333 0.00 0.00 0.00 1.90
1988 2201 8.771920 ACTCGTGTTTGATGACTAAATATTGA 57.228 30.769 0.00 0.00 0.00 2.57
1989 2202 9.383519 ACTCGTGTTTGATGACTAAATATTGAT 57.616 29.630 0.00 0.00 0.00 2.57
1990 2203 9.855361 CTCGTGTTTGATGACTAAATATTGATC 57.145 33.333 0.00 0.00 0.00 2.92
1992 2205 9.855361 CGTGTTTGATGACTAAATATTGATCTC 57.145 33.333 0.00 0.00 0.00 2.75
2085 2375 4.917385 ACAGCAATAATTGTGACCCAGTA 58.083 39.130 0.00 0.00 0.00 2.74
2086 2376 4.700213 ACAGCAATAATTGTGACCCAGTAC 59.300 41.667 0.00 0.00 0.00 2.73
2087 2377 4.699735 CAGCAATAATTGTGACCCAGTACA 59.300 41.667 0.00 0.00 0.00 2.90
2088 2378 4.943705 AGCAATAATTGTGACCCAGTACAG 59.056 41.667 0.00 0.00 0.00 2.74
2089 2379 4.438744 GCAATAATTGTGACCCAGTACAGC 60.439 45.833 0.00 0.00 0.00 4.40
2090 2380 4.844349 ATAATTGTGACCCAGTACAGCT 57.156 40.909 0.00 0.00 0.00 4.24
2091 2381 5.950544 ATAATTGTGACCCAGTACAGCTA 57.049 39.130 0.00 0.00 0.00 3.32
2092 2382 3.611766 ATTGTGACCCAGTACAGCTAC 57.388 47.619 0.00 0.00 0.00 3.58
2093 2383 0.885879 TGTGACCCAGTACAGCTACG 59.114 55.000 0.00 0.00 0.00 3.51
2094 2384 1.171308 GTGACCCAGTACAGCTACGA 58.829 55.000 0.00 0.00 0.00 3.43
2095 2385 1.135460 GTGACCCAGTACAGCTACGAC 60.135 57.143 0.00 0.00 0.00 4.34
2096 2386 1.271762 TGACCCAGTACAGCTACGACT 60.272 52.381 0.00 0.00 0.00 4.18
2097 2387 2.026915 TGACCCAGTACAGCTACGACTA 60.027 50.000 0.00 0.00 0.00 2.59
2098 2388 2.354199 GACCCAGTACAGCTACGACTAC 59.646 54.545 0.00 0.00 0.00 2.73
2099 2389 2.026449 ACCCAGTACAGCTACGACTACT 60.026 50.000 0.00 0.00 0.00 2.57
2100 2390 2.355132 CCCAGTACAGCTACGACTACTG 59.645 54.545 0.00 0.00 37.09 2.74
2101 2391 3.008330 CCAGTACAGCTACGACTACTGT 58.992 50.000 0.00 9.35 46.05 3.55
2102 2392 3.181509 CCAGTACAGCTACGACTACTGTG 60.182 52.174 12.87 0.84 44.12 3.66
2103 2393 2.419324 AGTACAGCTACGACTACTGTGC 59.581 50.000 12.87 11.75 44.12 4.57
2104 2394 0.168348 ACAGCTACGACTACTGTGCG 59.832 55.000 0.00 0.00 42.83 5.34
2105 2395 0.523546 CAGCTACGACTACTGTGCGG 60.524 60.000 0.00 0.00 0.00 5.69
2106 2396 0.675837 AGCTACGACTACTGTGCGGA 60.676 55.000 0.00 0.00 0.00 5.54
2107 2397 0.522915 GCTACGACTACTGTGCGGAC 60.523 60.000 0.00 0.00 0.00 4.79
2108 2398 0.247576 CTACGACTACTGTGCGGACG 60.248 60.000 1.60 0.00 0.00 4.79
2109 2399 0.670239 TACGACTACTGTGCGGACGA 60.670 55.000 1.60 0.00 0.00 4.20
2110 2400 1.511464 CGACTACTGTGCGGACGAC 60.511 63.158 1.60 0.00 0.00 4.34
2111 2401 1.577922 GACTACTGTGCGGACGACA 59.422 57.895 1.60 0.00 0.00 4.35
2112 2402 0.454620 GACTACTGTGCGGACGACAG 60.455 60.000 16.79 16.79 45.39 3.51
2115 2405 4.027755 CTGTGCGGACGACAGTTT 57.972 55.556 1.60 0.00 36.79 2.66
2116 2406 1.564622 CTGTGCGGACGACAGTTTG 59.435 57.895 1.60 0.00 36.79 2.93
2117 2407 2.248431 GTGCGGACGACAGTTTGC 59.752 61.111 0.00 0.00 0.00 3.68
2118 2408 2.970324 TGCGGACGACAGTTTGCC 60.970 61.111 0.00 0.00 32.17 4.52
2119 2409 3.723348 GCGGACGACAGTTTGCCC 61.723 66.667 0.00 0.00 0.00 5.36
2120 2410 3.411351 CGGACGACAGTTTGCCCG 61.411 66.667 0.00 0.00 0.00 6.13
2121 2411 3.723348 GGACGACAGTTTGCCCGC 61.723 66.667 0.00 0.00 0.00 6.13
2122 2412 2.970324 GACGACAGTTTGCCCGCA 60.970 61.111 0.00 0.00 0.00 5.69
2123 2413 3.236618 GACGACAGTTTGCCCGCAC 62.237 63.158 0.00 0.00 0.00 5.34
2124 2414 4.368808 CGACAGTTTGCCCGCACG 62.369 66.667 0.00 0.00 0.00 5.34
2125 2415 2.970324 GACAGTTTGCCCGCACGA 60.970 61.111 0.00 0.00 0.00 4.35
2126 2416 2.515057 ACAGTTTGCCCGCACGAA 60.515 55.556 0.00 0.00 0.00 3.85
2127 2417 2.051345 CAGTTTGCCCGCACGAAC 60.051 61.111 0.00 0.00 34.64 3.95
2128 2418 2.203153 AGTTTGCCCGCACGAACT 60.203 55.556 1.74 1.74 39.07 3.01
2129 2419 1.070105 AGTTTGCCCGCACGAACTA 59.930 52.632 5.21 0.00 41.52 2.24
2130 2420 0.533308 AGTTTGCCCGCACGAACTAA 60.533 50.000 5.21 0.00 41.52 2.24
2131 2421 0.110373 GTTTGCCCGCACGAACTAAG 60.110 55.000 0.00 0.00 32.16 2.18
2132 2422 1.231958 TTTGCCCGCACGAACTAAGG 61.232 55.000 0.00 0.00 0.00 2.69
2133 2423 2.102109 TTGCCCGCACGAACTAAGGA 62.102 55.000 0.00 0.00 0.00 3.36
2134 2424 2.098831 GCCCGCACGAACTAAGGAC 61.099 63.158 0.00 0.00 0.00 3.85
2135 2425 1.804326 CCCGCACGAACTAAGGACG 60.804 63.158 0.00 0.00 0.00 4.79
2136 2426 1.210931 CCGCACGAACTAAGGACGA 59.789 57.895 0.00 0.00 0.00 4.20
2137 2427 1.069378 CCGCACGAACTAAGGACGAC 61.069 60.000 0.00 0.00 0.00 4.34
2138 2428 1.393597 CGCACGAACTAAGGACGACG 61.394 60.000 0.00 0.00 0.00 5.12
2139 2429 1.069378 GCACGAACTAAGGACGACGG 61.069 60.000 0.00 0.00 0.00 4.79
2140 2430 0.518636 CACGAACTAAGGACGACGGA 59.481 55.000 0.00 0.00 0.00 4.69
2141 2431 1.131883 CACGAACTAAGGACGACGGAT 59.868 52.381 0.00 0.00 0.00 4.18
2142 2432 1.131883 ACGAACTAAGGACGACGGATG 59.868 52.381 0.00 0.00 0.00 3.51
2143 2433 1.399440 CGAACTAAGGACGACGGATGA 59.601 52.381 0.00 0.00 0.00 2.92
2144 2434 2.033049 CGAACTAAGGACGACGGATGAT 59.967 50.000 0.00 0.00 0.00 2.45
2145 2435 3.488721 CGAACTAAGGACGACGGATGATT 60.489 47.826 0.00 0.00 0.00 2.57
2146 2436 3.438297 ACTAAGGACGACGGATGATTG 57.562 47.619 0.00 0.00 0.00 2.67
2147 2437 3.021695 ACTAAGGACGACGGATGATTGA 58.978 45.455 0.00 0.00 0.00 2.57
2148 2438 2.295253 AAGGACGACGGATGATTGAC 57.705 50.000 0.00 0.00 0.00 3.18
2149 2439 0.100682 AGGACGACGGATGATTGACG 59.899 55.000 0.00 0.00 0.00 4.35
2150 2440 0.870307 GGACGACGGATGATTGACGG 60.870 60.000 0.00 0.00 0.00 4.79
2151 2441 0.179145 GACGACGGATGATTGACGGT 60.179 55.000 0.00 0.00 0.00 4.83
2152 2442 0.457853 ACGACGGATGATTGACGGTG 60.458 55.000 0.00 0.00 0.00 4.94
2153 2443 1.752501 CGACGGATGATTGACGGTGC 61.753 60.000 0.00 0.00 0.00 5.01
2154 2444 0.739462 GACGGATGATTGACGGTGCA 60.739 55.000 0.00 0.00 0.00 4.57
2155 2445 0.107703 ACGGATGATTGACGGTGCAT 60.108 50.000 0.00 0.00 0.00 3.96
2156 2446 0.583438 CGGATGATTGACGGTGCATC 59.417 55.000 0.00 0.00 37.11 3.91
2157 2447 0.947244 GGATGATTGACGGTGCATCC 59.053 55.000 0.00 0.00 46.84 3.51
2158 2448 1.667236 GATGATTGACGGTGCATCCA 58.333 50.000 0.00 0.00 35.57 3.41
2159 2449 1.600957 GATGATTGACGGTGCATCCAG 59.399 52.381 0.00 0.00 35.57 3.86
2160 2450 0.324614 TGATTGACGGTGCATCCAGT 59.675 50.000 0.00 0.00 35.57 4.00
2161 2451 1.271325 TGATTGACGGTGCATCCAGTT 60.271 47.619 0.00 0.00 35.57 3.16
2162 2452 1.812571 GATTGACGGTGCATCCAGTTT 59.187 47.619 0.00 0.00 35.57 2.66
2163 2453 1.686355 TTGACGGTGCATCCAGTTTT 58.314 45.000 0.00 0.00 35.57 2.43
2164 2454 1.686355 TGACGGTGCATCCAGTTTTT 58.314 45.000 0.00 0.00 35.57 1.94
2165 2455 1.336440 TGACGGTGCATCCAGTTTTTG 59.664 47.619 0.00 0.00 35.57 2.44
2166 2456 0.031994 ACGGTGCATCCAGTTTTTGC 59.968 50.000 0.00 0.00 36.91 3.68
2167 2457 0.314935 CGGTGCATCCAGTTTTTGCT 59.685 50.000 0.00 0.00 37.28 3.91
2168 2458 1.666888 CGGTGCATCCAGTTTTTGCTC 60.667 52.381 0.00 0.00 37.28 4.26
2169 2459 1.615392 GGTGCATCCAGTTTTTGCTCT 59.385 47.619 0.00 0.00 37.28 4.09
2170 2460 2.608752 GGTGCATCCAGTTTTTGCTCTG 60.609 50.000 0.00 0.00 37.28 3.35
2171 2461 1.000060 TGCATCCAGTTTTTGCTCTGC 60.000 47.619 0.00 0.00 37.28 4.26
2172 2462 1.973138 CATCCAGTTTTTGCTCTGCG 58.027 50.000 0.00 0.00 0.00 5.18
2173 2463 1.267806 CATCCAGTTTTTGCTCTGCGT 59.732 47.619 0.00 0.00 0.00 5.24
2174 2464 2.248280 TCCAGTTTTTGCTCTGCGTA 57.752 45.000 0.00 0.00 0.00 4.42
2175 2465 1.871039 TCCAGTTTTTGCTCTGCGTAC 59.129 47.619 0.00 0.00 0.00 3.67
2176 2466 1.398451 CCAGTTTTTGCTCTGCGTACG 60.398 52.381 11.84 11.84 0.00 3.67
2177 2467 1.260561 CAGTTTTTGCTCTGCGTACGT 59.739 47.619 17.90 0.00 0.00 3.57
2178 2468 2.473609 CAGTTTTTGCTCTGCGTACGTA 59.526 45.455 17.90 12.02 0.00 3.57
2179 2469 2.473984 AGTTTTTGCTCTGCGTACGTAC 59.526 45.455 17.90 15.90 0.00 3.67
2188 2478 4.576843 CGTACGTACGGTCGGATG 57.423 61.111 34.54 9.16 45.30 3.51
2189 2479 1.715585 CGTACGTACGGTCGGATGT 59.284 57.895 34.54 5.73 45.30 3.06
2190 2480 0.587242 CGTACGTACGGTCGGATGTG 60.587 60.000 34.54 7.76 45.30 3.21
2191 2481 0.863119 GTACGTACGGTCGGATGTGC 60.863 60.000 21.06 5.57 34.94 4.57
2192 2482 1.026182 TACGTACGGTCGGATGTGCT 61.026 55.000 21.06 0.00 34.94 4.40
2193 2483 1.872234 CGTACGGTCGGATGTGCTG 60.872 63.158 7.57 0.00 0.00 4.41
2194 2484 2.165301 GTACGGTCGGATGTGCTGC 61.165 63.158 0.00 0.00 0.00 5.25
2195 2485 2.641277 TACGGTCGGATGTGCTGCA 61.641 57.895 0.00 0.00 0.00 4.41
2196 2486 1.955495 TACGGTCGGATGTGCTGCAT 61.955 55.000 5.27 0.00 41.24 3.96
2202 2492 4.206958 GATGTGCTGCATCGTCCA 57.793 55.556 5.27 0.00 43.75 4.02
2203 2493 2.470156 GATGTGCTGCATCGTCCAA 58.530 52.632 5.27 0.00 43.75 3.53
2204 2494 0.804364 GATGTGCTGCATCGTCCAAA 59.196 50.000 5.27 0.00 43.75 3.28
2205 2495 0.806868 ATGTGCTGCATCGTCCAAAG 59.193 50.000 5.27 0.00 30.67 2.77
2206 2496 0.250252 TGTGCTGCATCGTCCAAAGA 60.250 50.000 5.27 0.00 0.00 2.52
2207 2497 1.089920 GTGCTGCATCGTCCAAAGAT 58.910 50.000 5.27 0.00 0.00 2.40
2208 2498 1.063174 GTGCTGCATCGTCCAAAGATC 59.937 52.381 5.27 0.00 0.00 2.75
2209 2499 0.302890 GCTGCATCGTCCAAAGATCG 59.697 55.000 0.00 0.00 0.00 3.69
2210 2500 1.645034 CTGCATCGTCCAAAGATCGT 58.355 50.000 0.00 0.00 0.00 3.73
2211 2501 1.590238 CTGCATCGTCCAAAGATCGTC 59.410 52.381 0.00 0.00 0.00 4.20
2212 2502 0.931005 GCATCGTCCAAAGATCGTCC 59.069 55.000 0.00 0.00 0.00 4.79
2213 2503 1.739035 GCATCGTCCAAAGATCGTCCA 60.739 52.381 0.00 0.00 0.00 4.02
2214 2504 2.616960 CATCGTCCAAAGATCGTCCAA 58.383 47.619 0.00 0.00 0.00 3.53
2215 2505 3.198068 CATCGTCCAAAGATCGTCCAAT 58.802 45.455 0.00 0.00 0.00 3.16
2216 2506 2.888594 TCGTCCAAAGATCGTCCAATC 58.111 47.619 0.00 0.00 0.00 2.67
2217 2507 2.496070 TCGTCCAAAGATCGTCCAATCT 59.504 45.455 0.00 0.00 37.61 2.40
2218 2508 3.056107 TCGTCCAAAGATCGTCCAATCTT 60.056 43.478 0.00 0.00 45.67 2.40
2219 2509 3.062639 CGTCCAAAGATCGTCCAATCTTG 59.937 47.826 0.22 0.00 43.53 3.02
2220 2510 4.003648 GTCCAAAGATCGTCCAATCTTGT 58.996 43.478 0.22 0.00 43.53 3.16
2221 2511 4.093556 GTCCAAAGATCGTCCAATCTTGTC 59.906 45.833 0.22 0.00 43.53 3.18
2222 2512 3.062639 CCAAAGATCGTCCAATCTTGTCG 59.937 47.826 0.22 0.00 43.53 4.35
2223 2513 3.594603 AAGATCGTCCAATCTTGTCGT 57.405 42.857 0.00 0.00 42.88 4.34
2224 2514 2.881074 AGATCGTCCAATCTTGTCGTG 58.119 47.619 0.00 0.00 31.89 4.35
2225 2515 2.231478 AGATCGTCCAATCTTGTCGTGT 59.769 45.455 0.00 0.00 31.89 4.49
2226 2516 1.778334 TCGTCCAATCTTGTCGTGTG 58.222 50.000 5.27 0.00 0.00 3.82
2227 2517 1.067974 TCGTCCAATCTTGTCGTGTGT 59.932 47.619 5.27 0.00 0.00 3.72
2228 2518 2.293955 TCGTCCAATCTTGTCGTGTGTA 59.706 45.455 5.27 0.00 0.00 2.90
2229 2519 3.057104 TCGTCCAATCTTGTCGTGTGTAT 60.057 43.478 5.27 0.00 0.00 2.29
2230 2520 4.156373 TCGTCCAATCTTGTCGTGTGTATA 59.844 41.667 5.27 0.00 0.00 1.47
2231 2521 4.499399 CGTCCAATCTTGTCGTGTGTATAG 59.501 45.833 0.00 0.00 0.00 1.31
2232 2522 4.267928 GTCCAATCTTGTCGTGTGTATAGC 59.732 45.833 0.00 0.00 0.00 2.97
2233 2523 4.081917 TCCAATCTTGTCGTGTGTATAGCA 60.082 41.667 0.00 0.00 0.00 3.49
2385 2676 5.163519 GGTCCATTAATGTGATTGAAGTGGG 60.164 44.000 14.25 0.00 0.00 4.61
2498 2789 5.212745 AGAGCCTTAAAGCTAGAGGTACAT 58.787 41.667 0.00 0.00 45.15 2.29
2627 2929 8.976986 ATTGACAGCTTCTTAAAATGATTCAC 57.023 30.769 0.00 0.00 0.00 3.18
2688 2990 5.521906 TTAGCAAGATACCTAGCAGTGAG 57.478 43.478 0.00 0.00 0.00 3.51
2735 3037 9.130661 TGATTGAGAAGGTTTTCAATTGTCTTA 57.869 29.630 5.13 0.00 42.43 2.10
3544 4040 2.851263 ATTCCTTCACTACAACCGCA 57.149 45.000 0.00 0.00 0.00 5.69
3895 4391 2.268920 GAGATCACCGCCCTTGCA 59.731 61.111 0.00 0.00 37.32 4.08
3961 4457 0.832135 ACAGTGTCTGGATCGGTGGT 60.832 55.000 0.00 0.00 35.51 4.16
4016 4512 1.519408 ACTTGCTTACGCGACCATTT 58.481 45.000 15.93 0.00 39.65 2.32
4029 4525 2.962191 CGACCATTTTTGTTTCGTCGTC 59.038 45.455 0.00 0.00 38.55 4.20
4030 4526 2.962191 GACCATTTTTGTTTCGTCGTCG 59.038 45.455 0.00 0.00 38.55 5.12
4034 4530 0.026544 TTTTGTTTCGTCGTCGTGGC 59.973 50.000 1.33 0.00 38.33 5.01
4142 4638 7.161404 ACCAGAAAGCAAATTAATCTTTTCCC 58.839 34.615 3.04 0.00 30.97 3.97
4157 4653 6.084326 TCTTTTCCCACAAAGCAAAGTATC 57.916 37.500 0.00 0.00 34.26 2.24
4163 4659 3.983344 CCACAAAGCAAAGTATCACTTGC 59.017 43.478 0.00 0.00 38.66 4.01
4194 4690 4.583073 GCTTTTGAAGAAAGTACCCCTGAA 59.417 41.667 0.00 0.00 0.00 3.02
4195 4691 5.507482 GCTTTTGAAGAAAGTACCCCTGAAC 60.507 44.000 0.00 0.00 0.00 3.18
4196 4692 3.782656 TGAAGAAAGTACCCCTGAACC 57.217 47.619 0.00 0.00 0.00 3.62
4198 4694 3.720002 TGAAGAAAGTACCCCTGAACCTT 59.280 43.478 0.00 0.00 0.00 3.50
4200 4696 4.808767 AGAAAGTACCCCTGAACCTTTT 57.191 40.909 0.00 0.00 0.00 2.27
4201 4697 5.138758 AGAAAGTACCCCTGAACCTTTTT 57.861 39.130 0.00 0.00 0.00 1.94
4250 4770 0.307146 GAGAGTACGACGAATCCGGG 59.693 60.000 0.00 0.00 40.78 5.73
4319 4851 5.188434 TCTCTGCACTTTTCCTATGATTGG 58.812 41.667 0.00 0.00 0.00 3.16
4466 5001 0.880278 TGCCGCTTGTTCTCAGTGAC 60.880 55.000 0.00 0.00 0.00 3.67
4468 5003 1.800805 CCGCTTGTTCTCAGTGACAT 58.199 50.000 0.00 0.00 0.00 3.06
4474 5009 5.287274 CGCTTGTTCTCAGTGACATTACTAG 59.713 44.000 0.00 0.00 0.00 2.57
4504 5039 1.219522 GATATTTAGCCGGTGCGCGT 61.220 55.000 8.43 0.00 44.33 6.01
4531 5077 1.740332 CGGTTTCGGGTTTGGGCTTT 61.740 55.000 0.00 0.00 0.00 3.51
4534 5080 1.403687 TTTCGGGTTTGGGCTTTGGG 61.404 55.000 0.00 0.00 0.00 4.12
4535 5081 4.002506 CGGGTTTGGGCTTTGGGC 62.003 66.667 0.00 0.00 40.90 5.36
4536 5082 2.526624 GGGTTTGGGCTTTGGGCT 60.527 61.111 0.00 0.00 41.46 5.19
4537 5083 2.743060 GGTTTGGGCTTTGGGCTG 59.257 61.111 0.00 0.00 41.46 4.85
4538 5084 2.140138 GGTTTGGGCTTTGGGCTGT 61.140 57.895 0.00 0.00 41.46 4.40
4617 5169 7.281324 TCCGTTAAGTATATTGGTGTGGAATTG 59.719 37.037 0.00 0.00 0.00 2.32
4695 5247 5.511571 GGTCTATTTCGGCTTGCTATTTTC 58.488 41.667 0.00 0.00 0.00 2.29
4768 5320 4.287766 AGAAAGTATTCGTGCCTCCTTT 57.712 40.909 0.00 0.00 40.63 3.11
4771 5323 2.973945 AGTATTCGTGCCTCCTTTCAC 58.026 47.619 0.00 0.00 0.00 3.18
4777 5329 1.594331 GTGCCTCCTTTCACGTTTCT 58.406 50.000 0.00 0.00 0.00 2.52
4778 5330 2.762745 GTGCCTCCTTTCACGTTTCTA 58.237 47.619 0.00 0.00 0.00 2.10
4788 5340 2.139917 TCACGTTTCTATTGCAAGCGT 58.860 42.857 4.94 5.79 40.75 5.07
4816 5368 4.829064 CAGTATGCACTAGAGTCTCTCC 57.171 50.000 5.39 0.00 32.21 3.71
4817 5369 4.203226 CAGTATGCACTAGAGTCTCTCCA 58.797 47.826 5.39 0.56 32.21 3.86
4818 5370 4.826733 CAGTATGCACTAGAGTCTCTCCAT 59.173 45.833 5.39 7.82 32.21 3.41
4819 5371 5.048782 CAGTATGCACTAGAGTCTCTCCATC 60.049 48.000 5.39 0.00 32.21 3.51
4820 5372 2.660572 TGCACTAGAGTCTCTCCATCC 58.339 52.381 5.39 0.00 0.00 3.51
4821 5373 2.024941 TGCACTAGAGTCTCTCCATCCA 60.025 50.000 5.39 0.00 0.00 3.41
4822 5374 3.230134 GCACTAGAGTCTCTCCATCCAT 58.770 50.000 5.39 0.00 0.00 3.41
4823 5375 3.255642 GCACTAGAGTCTCTCCATCCATC 59.744 52.174 5.39 0.00 0.00 3.51
4824 5376 4.728772 CACTAGAGTCTCTCCATCCATCT 58.271 47.826 5.39 0.00 0.00 2.90
4825 5377 4.520111 CACTAGAGTCTCTCCATCCATCTG 59.480 50.000 5.39 0.00 0.00 2.90
4826 5378 2.318908 AGAGTCTCTCCATCCATCTGC 58.681 52.381 0.00 0.00 0.00 4.26
4827 5379 2.091166 AGAGTCTCTCCATCCATCTGCT 60.091 50.000 0.00 0.00 0.00 4.24
4828 5380 2.036217 GAGTCTCTCCATCCATCTGCTG 59.964 54.545 0.00 0.00 0.00 4.41
4829 5381 1.761784 GTCTCTCCATCCATCTGCTGT 59.238 52.381 0.00 0.00 0.00 4.40
4830 5382 1.761198 TCTCTCCATCCATCTGCTGTG 59.239 52.381 0.00 0.00 0.00 3.66
4831 5383 1.761198 CTCTCCATCCATCTGCTGTGA 59.239 52.381 0.00 0.00 0.00 3.58
4832 5384 2.369203 CTCTCCATCCATCTGCTGTGAT 59.631 50.000 0.00 0.00 0.00 3.06
4833 5385 2.104281 TCTCCATCCATCTGCTGTGATG 59.896 50.000 10.94 10.94 42.38 3.07
4834 5386 1.841919 TCCATCCATCTGCTGTGATGT 59.158 47.619 14.29 0.00 41.47 3.06
4835 5387 1.947456 CCATCCATCTGCTGTGATGTG 59.053 52.381 14.29 8.15 41.47 3.21
4836 5388 2.640184 CATCCATCTGCTGTGATGTGT 58.360 47.619 11.73 1.30 41.47 3.72
4837 5389 2.865119 TCCATCTGCTGTGATGTGTT 57.135 45.000 11.73 0.00 41.47 3.32
4838 5390 3.144657 TCCATCTGCTGTGATGTGTTT 57.855 42.857 11.73 0.00 41.47 2.83
4839 5391 2.815503 TCCATCTGCTGTGATGTGTTTG 59.184 45.455 11.73 0.71 41.47 2.93
4840 5392 2.555325 CCATCTGCTGTGATGTGTTTGT 59.445 45.455 11.73 0.00 41.47 2.83
4841 5393 3.365666 CCATCTGCTGTGATGTGTTTGTC 60.366 47.826 11.73 0.00 41.47 3.18
4842 5394 2.916640 TCTGCTGTGATGTGTTTGTCA 58.083 42.857 0.00 0.00 0.00 3.58
4843 5395 2.613595 TCTGCTGTGATGTGTTTGTCAC 59.386 45.455 0.00 0.00 46.31 3.67
4844 5396 1.675483 TGCTGTGATGTGTTTGTCACC 59.325 47.619 3.38 0.00 45.61 4.02
4845 5397 1.949525 GCTGTGATGTGTTTGTCACCT 59.050 47.619 3.38 0.00 45.61 4.00
4846 5398 2.031682 GCTGTGATGTGTTTGTCACCTC 60.032 50.000 3.38 0.00 45.61 3.85
4847 5399 2.549754 CTGTGATGTGTTTGTCACCTCC 59.450 50.000 3.38 0.00 45.61 4.30
4848 5400 2.092699 TGTGATGTGTTTGTCACCTCCA 60.093 45.455 3.38 0.00 45.61 3.86
4849 5401 2.948979 GTGATGTGTTTGTCACCTCCAA 59.051 45.455 0.00 0.00 45.61 3.53
4850 5402 3.569701 GTGATGTGTTTGTCACCTCCAAT 59.430 43.478 0.00 0.00 45.61 3.16
4851 5403 3.569277 TGATGTGTTTGTCACCTCCAATG 59.431 43.478 0.00 0.00 45.61 2.82
4852 5404 3.289407 TGTGTTTGTCACCTCCAATGA 57.711 42.857 0.00 0.00 45.61 2.57
4853 5405 3.625853 TGTGTTTGTCACCTCCAATGAA 58.374 40.909 0.00 0.00 45.61 2.57
4854 5406 4.214310 TGTGTTTGTCACCTCCAATGAAT 58.786 39.130 0.00 0.00 45.61 2.57
4855 5407 4.648762 TGTGTTTGTCACCTCCAATGAATT 59.351 37.500 0.00 0.00 45.61 2.17
4856 5408 5.128499 TGTGTTTGTCACCTCCAATGAATTT 59.872 36.000 0.00 0.00 45.61 1.82
4857 5409 6.048509 GTGTTTGTCACCTCCAATGAATTTT 58.951 36.000 0.00 0.00 40.84 1.82
4858 5410 6.538381 GTGTTTGTCACCTCCAATGAATTTTT 59.462 34.615 0.00 0.00 40.84 1.94
4881 5433 2.358939 TTAAGAAACTCGTCGAGGGC 57.641 50.000 25.25 13.85 33.35 5.19
4882 5434 1.250328 TAAGAAACTCGTCGAGGGCA 58.750 50.000 25.25 2.62 33.35 5.36
4883 5435 0.038159 AAGAAACTCGTCGAGGGCAG 60.038 55.000 25.25 1.97 33.35 4.85
4884 5436 1.179814 AGAAACTCGTCGAGGGCAGT 61.180 55.000 25.25 2.65 33.35 4.40
4885 5437 1.006102 AAACTCGTCGAGGGCAGTG 60.006 57.895 25.25 0.46 33.35 3.66
4886 5438 2.436087 AAACTCGTCGAGGGCAGTGG 62.436 60.000 25.25 0.00 33.35 4.00
4887 5439 4.803426 CTCGTCGAGGGCAGTGGC 62.803 72.222 14.68 8.47 40.13 5.01
4890 5442 4.008933 GTCGAGGGCAGTGGCAGT 62.009 66.667 19.48 4.61 43.71 4.40
4891 5443 3.241530 TCGAGGGCAGTGGCAGTT 61.242 61.111 19.48 3.03 43.71 3.16
4892 5444 2.743928 CGAGGGCAGTGGCAGTTC 60.744 66.667 19.48 11.38 43.71 3.01
4893 5445 2.431683 GAGGGCAGTGGCAGTTCA 59.568 61.111 19.48 0.00 43.71 3.18
4894 5446 1.001641 GAGGGCAGTGGCAGTTCAT 60.002 57.895 19.48 0.00 43.71 2.57
4895 5447 0.610232 GAGGGCAGTGGCAGTTCATT 60.610 55.000 19.48 0.00 43.71 2.57
4896 5448 0.896940 AGGGCAGTGGCAGTTCATTG 60.897 55.000 19.48 0.00 43.71 2.82
4897 5449 0.895100 GGGCAGTGGCAGTTCATTGA 60.895 55.000 19.48 0.00 43.71 2.57
4898 5450 0.961019 GGCAGTGGCAGTTCATTGAA 59.039 50.000 12.58 0.00 43.71 2.69
4899 5451 1.340889 GGCAGTGGCAGTTCATTGAAA 59.659 47.619 12.58 0.00 43.71 2.69
4900 5452 2.224018 GGCAGTGGCAGTTCATTGAAAA 60.224 45.455 12.58 0.00 43.71 2.29
4901 5453 3.054878 GCAGTGGCAGTTCATTGAAAAG 58.945 45.455 0.00 0.00 40.72 2.27
4902 5454 3.243501 GCAGTGGCAGTTCATTGAAAAGA 60.244 43.478 0.00 0.00 40.72 2.52
4903 5455 4.560108 GCAGTGGCAGTTCATTGAAAAGAT 60.560 41.667 0.00 0.00 40.72 2.40
4904 5456 5.159209 CAGTGGCAGTTCATTGAAAAGATC 58.841 41.667 0.00 0.00 0.00 2.75
4905 5457 4.219288 AGTGGCAGTTCATTGAAAAGATCC 59.781 41.667 0.00 0.02 0.00 3.36
4906 5458 4.022068 GTGGCAGTTCATTGAAAAGATCCA 60.022 41.667 0.00 2.49 0.00 3.41
4907 5459 4.588106 TGGCAGTTCATTGAAAAGATCCAA 59.412 37.500 0.00 0.00 0.00 3.53
4908 5460 5.246656 TGGCAGTTCATTGAAAAGATCCAAT 59.753 36.000 0.00 0.00 33.66 3.16
4909 5461 6.168389 GGCAGTTCATTGAAAAGATCCAATT 58.832 36.000 0.00 0.00 31.25 2.32
4910 5462 6.652062 GGCAGTTCATTGAAAAGATCCAATTT 59.348 34.615 0.00 0.00 31.25 1.82
4911 5463 7.360607 GGCAGTTCATTGAAAAGATCCAATTTG 60.361 37.037 0.00 0.00 31.25 2.32
4912 5464 7.172019 GCAGTTCATTGAAAAGATCCAATTTGT 59.828 33.333 0.00 0.00 31.25 2.83
4913 5465 9.695526 CAGTTCATTGAAAAGATCCAATTTGTA 57.304 29.630 0.00 0.00 31.25 2.41
4927 5479 9.358872 GATCCAATTTGTAAGAAAAATCAGACC 57.641 33.333 0.00 0.00 0.00 3.85
4928 5480 8.243961 TCCAATTTGTAAGAAAAATCAGACCA 57.756 30.769 0.00 0.00 0.00 4.02
4929 5481 8.700051 TCCAATTTGTAAGAAAAATCAGACCAA 58.300 29.630 0.00 0.00 0.00 3.67
4930 5482 9.323985 CCAATTTGTAAGAAAAATCAGACCAAA 57.676 29.630 0.00 0.00 0.00 3.28
4948 5500 1.687563 AAAAACCTAACAGCGCTGGT 58.312 45.000 38.27 35.91 34.19 4.00
4949 5501 1.687563 AAAACCTAACAGCGCTGGTT 58.312 45.000 38.27 29.15 43.73 3.67
4950 5502 1.687563 AAACCTAACAGCGCTGGTTT 58.312 45.000 38.27 32.43 44.84 3.27
4951 5503 2.554370 AACCTAACAGCGCTGGTTTA 57.446 45.000 38.27 26.57 39.48 2.01
4952 5504 2.554370 ACCTAACAGCGCTGGTTTAA 57.446 45.000 38.27 19.04 34.19 1.52
4953 5505 2.853705 ACCTAACAGCGCTGGTTTAAA 58.146 42.857 38.27 18.65 34.19 1.52
4954 5506 3.215975 ACCTAACAGCGCTGGTTTAAAA 58.784 40.909 38.27 18.25 34.19 1.52
4955 5507 3.824443 ACCTAACAGCGCTGGTTTAAAAT 59.176 39.130 38.27 14.66 34.19 1.82
4956 5508 5.005094 ACCTAACAGCGCTGGTTTAAAATA 58.995 37.500 38.27 16.71 34.19 1.40
4957 5509 5.650703 ACCTAACAGCGCTGGTTTAAAATAT 59.349 36.000 38.27 13.11 34.19 1.28
4958 5510 6.152154 ACCTAACAGCGCTGGTTTAAAATATT 59.848 34.615 38.27 22.08 34.19 1.28
4959 5511 7.033185 CCTAACAGCGCTGGTTTAAAATATTT 58.967 34.615 38.27 21.60 34.19 1.40
4960 5512 7.544217 CCTAACAGCGCTGGTTTAAAATATTTT 59.456 33.333 38.27 21.41 34.19 1.82
4961 5513 9.562583 CTAACAGCGCTGGTTTAAAATATTTTA 57.437 29.630 38.27 21.38 34.19 1.52
4962 5514 8.996024 AACAGCGCTGGTTTAAAATATTTTAT 57.004 26.923 38.27 10.79 32.23 1.40
4963 5515 8.996024 ACAGCGCTGGTTTAAAATATTTTATT 57.004 26.923 38.27 10.42 32.23 1.40
4964 5516 9.430623 ACAGCGCTGGTTTAAAATATTTTATTT 57.569 25.926 38.27 10.08 32.23 1.40
4965 5517 9.687717 CAGCGCTGGTTTAAAATATTTTATTTG 57.312 29.630 29.88 10.35 33.12 2.32
4966 5518 9.646427 AGCGCTGGTTTAAAATATTTTATTTGA 57.354 25.926 18.87 4.15 33.12 2.69
4983 5535 9.638239 TTTTATTTGAATATGGAAGTTGCTGAC 57.362 29.630 0.00 0.00 0.00 3.51
4984 5536 6.839124 ATTTGAATATGGAAGTTGCTGACA 57.161 33.333 0.00 0.00 0.00 3.58
4985 5537 6.839124 TTTGAATATGGAAGTTGCTGACAT 57.161 33.333 0.00 0.00 0.00 3.06
4986 5538 7.936496 TTTGAATATGGAAGTTGCTGACATA 57.064 32.000 0.00 0.00 0.00 2.29
4987 5539 8.523915 TTTGAATATGGAAGTTGCTGACATAT 57.476 30.769 0.00 0.00 36.57 1.78
4988 5540 9.625747 TTTGAATATGGAAGTTGCTGACATATA 57.374 29.630 0.00 0.00 34.61 0.86
4989 5541 8.607441 TGAATATGGAAGTTGCTGACATATAC 57.393 34.615 0.00 0.00 34.61 1.47
4990 5542 8.210265 TGAATATGGAAGTTGCTGACATATACA 58.790 33.333 0.00 0.00 34.61 2.29
4991 5543 9.224267 GAATATGGAAGTTGCTGACATATACAT 57.776 33.333 0.00 0.00 34.61 2.29
5104 5657 3.131400 ACGTGTGGGCAAAACAAGTAATT 59.869 39.130 4.50 0.00 38.27 1.40
5118 5756 5.880901 ACAAGTAATTCCCACACATCTCTT 58.119 37.500 0.00 0.00 0.00 2.85
5203 5845 1.480954 CCGTATGTCAGGCCTTGTACT 59.519 52.381 0.00 0.00 0.00 2.73
5235 5877 1.664649 CGCCACGTGTGACACTCAT 60.665 57.895 15.65 0.00 31.34 2.90
5354 5997 3.814842 CAGTTGTCATGGTTGCTCAACTA 59.185 43.478 11.91 6.96 41.29 2.24
5500 6538 4.340666 TGCCATGTAAAAGAAAGAGTTGCA 59.659 37.500 0.00 0.00 0.00 4.08
5501 6539 5.010922 TGCCATGTAAAAGAAAGAGTTGCAT 59.989 36.000 0.00 0.00 0.00 3.96
5503 6541 6.424812 GCCATGTAAAAGAAAGAGTTGCATTT 59.575 34.615 0.00 0.00 0.00 2.32
5505 6543 8.829612 CCATGTAAAAGAAAGAGTTGCATTTTT 58.170 29.630 0.00 0.00 0.00 1.94
5587 6930 2.115911 GTGAACGCCCACACACCAA 61.116 57.895 3.27 0.00 37.04 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.609208 GCAACAGATGGTCACTTGGT 58.391 50.000 0.00 0.00 0.00 3.67
59 60 0.883833 GGCAACAGATGGTCACTTGG 59.116 55.000 0.00 0.00 0.00 3.61
73 87 1.692411 AGGAAGGACACTTTGGCAAC 58.308 50.000 0.00 0.00 36.97 4.17
74 88 3.806949 ATAGGAAGGACACTTTGGCAA 57.193 42.857 0.00 0.00 36.97 4.52
131 145 4.468689 CCGGAGCCGAAGAACCCC 62.469 72.222 11.05 0.00 42.83 4.95
155 169 3.958704 GATCAAGATGATCGTCTGTCGT 58.041 45.455 18.17 5.30 43.11 4.34
166 180 2.166459 GTGACAGGGTCGATCAAGATGA 59.834 50.000 0.00 0.00 34.95 2.92
172 186 3.001902 GCCGTGACAGGGTCGATCA 62.002 63.158 15.34 0.00 34.95 2.92
178 192 3.941188 CCAGTGCCGTGACAGGGT 61.941 66.667 15.34 0.00 0.00 4.34
186 200 3.545124 TTTCGCCATCCAGTGCCGT 62.545 57.895 0.00 0.00 0.00 5.68
197 211 1.228003 ATCCAACACCGTTTCGCCA 60.228 52.632 0.00 0.00 0.00 5.69
223 237 2.710724 AAAGCGCGGATCCGGATACC 62.711 60.000 33.98 19.42 40.19 2.73
227 241 3.014085 AAGAAAGCGCGGATCCGGA 62.014 57.895 33.98 6.61 40.19 5.14
232 246 1.453155 AATGTCAAGAAAGCGCGGAT 58.547 45.000 8.83 0.00 0.00 4.18
278 294 2.162809 TGAGTGTATGCGAGCGACTTTA 59.837 45.455 0.00 0.00 0.00 1.85
315 342 4.663334 TCATAGAGATAGGGTATGCGTGT 58.337 43.478 0.00 0.00 0.00 4.49
331 358 3.072330 ACTCTCTCGGAGATGCTCATAGA 59.928 47.826 8.39 0.00 44.45 1.98
341 368 2.019668 GCCAGCTTACTCTCTCGGAGA 61.020 57.143 7.60 7.60 44.45 3.71
352 379 1.066605 CAAGATGCCATGCCAGCTTAC 59.933 52.381 6.89 0.00 39.23 2.34
354 381 0.323999 TCAAGATGCCATGCCAGCTT 60.324 50.000 0.57 0.57 41.69 3.74
358 385 2.447408 AATCTCAAGATGCCATGCCA 57.553 45.000 0.00 0.00 34.49 4.92
364 391 5.351465 TGACTTCGTAAAATCTCAAGATGCC 59.649 40.000 0.00 0.00 34.49 4.40
414 441 1.005394 TTCAACGGGAGAAGACGCC 60.005 57.895 0.00 0.00 35.24 5.68
415 442 1.615107 CGTTCAACGGGAGAAGACGC 61.615 60.000 0.61 0.00 38.08 5.19
421 448 2.139917 CAATGTTCGTTCAACGGGAGA 58.860 47.619 10.69 0.00 42.81 3.71
427 454 0.589223 TCCGGCAATGTTCGTTCAAC 59.411 50.000 0.00 0.00 35.28 3.18
428 455 1.265635 CTTCCGGCAATGTTCGTTCAA 59.734 47.619 0.00 0.00 0.00 2.69
440 467 3.634910 GGATTTATTTTAGGCTTCCGGCA 59.365 43.478 0.00 0.00 44.01 5.69
514 541 2.667470 GACAGTGGTATCCCTAGCTCA 58.333 52.381 0.00 0.00 0.00 4.26
520 547 1.019650 AGGAGGACAGTGGTATCCCT 58.980 55.000 0.00 0.00 34.82 4.20
563 592 8.860088 ACATCAAAACCCTTCTTATAATATGCC 58.140 33.333 0.00 0.00 0.00 4.40
567 596 8.691797 GGCAACATCAAAACCCTTCTTATAATA 58.308 33.333 0.00 0.00 0.00 0.98
573 602 3.037549 TGGCAACATCAAAACCCTTCTT 58.962 40.909 0.00 0.00 46.17 2.52
1100 1135 2.203938 AACCTTGGGGAGCGAGGA 60.204 61.111 0.00 0.00 34.61 3.71
1101 1136 2.269241 GAACCTTGGGGAGCGAGG 59.731 66.667 0.00 0.00 36.62 4.63
1102 1137 1.961180 ATCGAACCTTGGGGAGCGAG 61.961 60.000 0.00 0.00 41.61 5.03
1103 1138 1.956629 GATCGAACCTTGGGGAGCGA 61.957 60.000 0.00 0.00 42.12 4.93
1289 1353 1.875963 CAGCGGCTAACCAAACCAG 59.124 57.895 0.26 0.00 34.57 4.00
1302 1372 4.842091 GCAGCCATTTCGCAGCGG 62.842 66.667 16.42 0.00 31.31 5.52
1304 1374 2.101770 GAGCAGCCATTTCGCAGC 59.898 61.111 0.00 0.00 41.22 5.25
1388 1465 2.158957 ACCACTTGGACACTGTGTACTG 60.159 50.000 22.78 17.17 38.94 2.74
1391 1468 1.834896 ACACCACTTGGACACTGTGTA 59.165 47.619 14.31 0.00 35.36 2.90
1395 1472 1.512926 GCTACACCACTTGGACACTG 58.487 55.000 1.14 0.00 38.94 3.66
1408 1485 3.552890 CCAAGCAAAGGAAAAGGCTACAC 60.553 47.826 0.00 0.00 35.11 2.90
1410 1487 2.610479 GCCAAGCAAAGGAAAAGGCTAC 60.610 50.000 0.00 0.00 37.67 3.58
1425 1502 3.654020 GATCCCATCGCGCCAAGC 61.654 66.667 0.00 0.00 43.95 4.01
1426 1503 2.109799 AGATCCCATCGCGCCAAG 59.890 61.111 0.00 0.00 0.00 3.61
1432 1509 1.375268 GCCTAGCAGATCCCATCGC 60.375 63.158 0.00 0.00 0.00 4.58
1461 1538 1.139058 CCACCTCCCCGATTTAGACAG 59.861 57.143 0.00 0.00 0.00 3.51
1500 1587 3.008049 ACTCTGGTATGGACACTTGGTTC 59.992 47.826 0.00 0.00 0.00 3.62
1536 1623 3.225104 AGACAGTTGATGGCAAACACAT 58.775 40.909 4.98 0.00 40.68 3.21
1539 1626 3.316029 CAGAAGACAGTTGATGGCAAACA 59.684 43.478 4.98 0.00 40.68 2.83
1545 1632 5.541845 TCTTACACAGAAGACAGTTGATGG 58.458 41.667 0.00 0.00 30.36 3.51
1673 1766 5.653330 ACTGCACATTTCATAATGATGTCCA 59.347 36.000 4.99 0.00 43.12 4.02
1714 1808 9.045223 GTTATTACAGTAGAATGATGATGTGCA 57.955 33.333 0.00 0.00 0.00 4.57
1715 1809 9.265901 AGTTATTACAGTAGAATGATGATGTGC 57.734 33.333 0.00 0.00 0.00 4.57
1775 1874 6.268825 TGTAAGACCACAAGATCAGAGTAC 57.731 41.667 0.00 0.00 0.00 2.73
1815 1914 7.593273 CGATTAAGCTAAAAATTGGTGTGTTCA 59.407 33.333 0.00 0.00 0.00 3.18
1841 1940 8.904099 ATTAACAAATAGCTGACAGGTATACC 57.096 34.615 23.75 14.54 37.88 2.73
1847 1946 6.741992 TGTGATTAACAAATAGCTGACAGG 57.258 37.500 4.26 0.00 35.24 4.00
1939 2152 0.524862 GAGCTGCAAAGTCCATGTGG 59.475 55.000 1.02 0.00 0.00 4.17
1949 2162 0.035317 ACGAGTCATGGAGCTGCAAA 59.965 50.000 13.45 0.00 0.00 3.68
1960 2173 8.948631 ATATTTAGTCATCAAACACGAGTCAT 57.051 30.769 0.00 0.00 0.00 3.06
1962 2175 8.869897 TCAATATTTAGTCATCAAACACGAGTC 58.130 33.333 0.00 0.00 0.00 3.36
1964 2177 9.855361 GATCAATATTTAGTCATCAAACACGAG 57.145 33.333 0.00 0.00 0.00 4.18
1993 2206 3.362706 TCCAGCCTAGTACCAGTACTTG 58.637 50.000 15.24 12.95 43.35 3.16
1996 2209 3.318557 GTCATCCAGCCTAGTACCAGTAC 59.681 52.174 0.00 0.00 36.35 2.73
1997 2210 3.204606 AGTCATCCAGCCTAGTACCAGTA 59.795 47.826 0.00 0.00 0.00 2.74
1998 2211 2.023888 AGTCATCCAGCCTAGTACCAGT 60.024 50.000 0.00 0.00 0.00 4.00
1999 2212 2.672098 AGTCATCCAGCCTAGTACCAG 58.328 52.381 0.00 0.00 0.00 4.00
2000 2213 2.848678 AGTCATCCAGCCTAGTACCA 57.151 50.000 0.00 0.00 0.00 3.25
2062 2352 3.758554 ACTGGGTCACAATTATTGCTGTC 59.241 43.478 4.68 1.58 0.00 3.51
2079 2369 2.355132 CAGTAGTCGTAGCTGTACTGGG 59.645 54.545 0.00 0.00 39.05 4.45
2085 2375 0.168348 CGCACAGTAGTCGTAGCTGT 59.832 55.000 0.00 0.00 43.37 4.40
2086 2376 0.523546 CCGCACAGTAGTCGTAGCTG 60.524 60.000 0.00 0.00 36.41 4.24
2087 2377 0.675837 TCCGCACAGTAGTCGTAGCT 60.676 55.000 0.00 0.00 0.00 3.32
2088 2378 0.522915 GTCCGCACAGTAGTCGTAGC 60.523 60.000 0.00 0.00 0.00 3.58
2089 2379 0.247576 CGTCCGCACAGTAGTCGTAG 60.248 60.000 0.00 0.00 0.00 3.51
2090 2380 0.670239 TCGTCCGCACAGTAGTCGTA 60.670 55.000 0.00 0.00 0.00 3.43
2091 2381 1.962822 TCGTCCGCACAGTAGTCGT 60.963 57.895 0.00 0.00 0.00 4.34
2092 2382 1.511464 GTCGTCCGCACAGTAGTCG 60.511 63.158 0.00 0.00 0.00 4.18
2093 2383 0.454620 CTGTCGTCCGCACAGTAGTC 60.455 60.000 9.57 0.00 37.15 2.59
2094 2384 1.579932 CTGTCGTCCGCACAGTAGT 59.420 57.895 9.57 0.00 37.15 2.73
2095 2385 4.459973 CTGTCGTCCGCACAGTAG 57.540 61.111 9.57 0.00 37.15 2.57
2098 2388 1.564622 CAAACTGTCGTCCGCACAG 59.435 57.895 13.76 13.76 45.86 3.66
2099 2389 2.530497 GCAAACTGTCGTCCGCACA 61.530 57.895 0.00 0.00 0.00 4.57
2100 2390 2.248431 GCAAACTGTCGTCCGCAC 59.752 61.111 0.00 0.00 0.00 5.34
2101 2391 2.970324 GGCAAACTGTCGTCCGCA 60.970 61.111 0.00 0.00 0.00 5.69
2102 2392 3.723348 GGGCAAACTGTCGTCCGC 61.723 66.667 0.00 0.00 0.00 5.54
2103 2393 3.411351 CGGGCAAACTGTCGTCCG 61.411 66.667 8.53 8.53 0.00 4.79
2104 2394 3.723348 GCGGGCAAACTGTCGTCC 61.723 66.667 0.00 0.00 0.00 4.79
2105 2395 2.970324 TGCGGGCAAACTGTCGTC 60.970 61.111 0.00 0.00 0.00 4.20
2106 2396 3.276846 GTGCGGGCAAACTGTCGT 61.277 61.111 0.00 0.00 0.00 4.34
2107 2397 4.368808 CGTGCGGGCAAACTGTCG 62.369 66.667 0.00 0.00 0.00 4.35
2108 2398 2.539338 TTCGTGCGGGCAAACTGTC 61.539 57.895 0.00 0.00 0.00 3.51
2109 2399 2.515057 TTCGTGCGGGCAAACTGT 60.515 55.556 0.00 0.00 0.00 3.55
2110 2400 1.225376 TAGTTCGTGCGGGCAAACTG 61.225 55.000 16.87 0.49 31.76 3.16
2111 2401 0.533308 TTAGTTCGTGCGGGCAAACT 60.533 50.000 13.43 13.43 33.32 2.66
2112 2402 0.110373 CTTAGTTCGTGCGGGCAAAC 60.110 55.000 0.00 0.00 0.00 2.93
2113 2403 1.231958 CCTTAGTTCGTGCGGGCAAA 61.232 55.000 0.00 0.00 0.00 3.68
2114 2404 1.669760 CCTTAGTTCGTGCGGGCAA 60.670 57.895 0.00 0.00 0.00 4.52
2115 2405 2.047655 CCTTAGTTCGTGCGGGCA 60.048 61.111 0.00 0.00 0.00 5.36
2116 2406 2.098831 GTCCTTAGTTCGTGCGGGC 61.099 63.158 0.00 0.00 0.00 6.13
2117 2407 1.804326 CGTCCTTAGTTCGTGCGGG 60.804 63.158 0.00 0.00 0.00 6.13
2118 2408 1.069378 GTCGTCCTTAGTTCGTGCGG 61.069 60.000 0.00 0.00 0.00 5.69
2119 2409 1.393597 CGTCGTCCTTAGTTCGTGCG 61.394 60.000 0.00 0.00 0.00 5.34
2120 2410 1.069378 CCGTCGTCCTTAGTTCGTGC 61.069 60.000 0.00 0.00 0.00 5.34
2121 2411 0.518636 TCCGTCGTCCTTAGTTCGTG 59.481 55.000 0.00 0.00 0.00 4.35
2122 2412 1.131883 CATCCGTCGTCCTTAGTTCGT 59.868 52.381 0.00 0.00 0.00 3.85
2123 2413 1.399440 TCATCCGTCGTCCTTAGTTCG 59.601 52.381 0.00 0.00 0.00 3.95
2124 2414 3.712091 ATCATCCGTCGTCCTTAGTTC 57.288 47.619 0.00 0.00 0.00 3.01
2125 2415 3.446161 TCAATCATCCGTCGTCCTTAGTT 59.554 43.478 0.00 0.00 0.00 2.24
2126 2416 3.021695 TCAATCATCCGTCGTCCTTAGT 58.978 45.455 0.00 0.00 0.00 2.24
2127 2417 3.372954 GTCAATCATCCGTCGTCCTTAG 58.627 50.000 0.00 0.00 0.00 2.18
2128 2418 2.223409 CGTCAATCATCCGTCGTCCTTA 60.223 50.000 0.00 0.00 0.00 2.69
2129 2419 1.469251 CGTCAATCATCCGTCGTCCTT 60.469 52.381 0.00 0.00 0.00 3.36
2130 2420 0.100682 CGTCAATCATCCGTCGTCCT 59.899 55.000 0.00 0.00 0.00 3.85
2131 2421 0.870307 CCGTCAATCATCCGTCGTCC 60.870 60.000 0.00 0.00 0.00 4.79
2132 2422 0.179145 ACCGTCAATCATCCGTCGTC 60.179 55.000 0.00 0.00 0.00 4.20
2133 2423 0.457853 CACCGTCAATCATCCGTCGT 60.458 55.000 0.00 0.00 0.00 4.34
2134 2424 1.752501 GCACCGTCAATCATCCGTCG 61.753 60.000 0.00 0.00 0.00 5.12
2135 2425 0.739462 TGCACCGTCAATCATCCGTC 60.739 55.000 0.00 0.00 0.00 4.79
2136 2426 0.107703 ATGCACCGTCAATCATCCGT 60.108 50.000 0.00 0.00 0.00 4.69
2137 2427 0.583438 GATGCACCGTCAATCATCCG 59.417 55.000 0.00 0.00 31.62 4.18
2138 2428 0.947244 GGATGCACCGTCAATCATCC 59.053 55.000 4.59 4.59 45.39 3.51
2139 2429 1.600957 CTGGATGCACCGTCAATCATC 59.399 52.381 0.00 0.00 42.61 2.92
2140 2430 1.065199 ACTGGATGCACCGTCAATCAT 60.065 47.619 0.00 0.00 42.61 2.45
2141 2431 0.324614 ACTGGATGCACCGTCAATCA 59.675 50.000 0.00 0.00 42.61 2.57
2142 2432 1.453155 AACTGGATGCACCGTCAATC 58.547 50.000 0.00 0.00 42.61 2.67
2143 2433 1.909700 AAACTGGATGCACCGTCAAT 58.090 45.000 0.00 0.00 42.61 2.57
2144 2434 1.686355 AAAACTGGATGCACCGTCAA 58.314 45.000 0.00 0.00 42.61 3.18
2145 2435 1.336440 CAAAAACTGGATGCACCGTCA 59.664 47.619 0.00 0.00 42.61 4.35
2146 2436 1.930371 GCAAAAACTGGATGCACCGTC 60.930 52.381 0.00 0.00 42.61 4.79
2147 2437 0.031994 GCAAAAACTGGATGCACCGT 59.968 50.000 0.00 0.00 42.61 4.83
2148 2438 0.314935 AGCAAAAACTGGATGCACCG 59.685 50.000 0.00 0.00 42.45 4.94
2149 2439 1.615392 AGAGCAAAAACTGGATGCACC 59.385 47.619 0.00 0.00 42.45 5.01
2150 2440 2.669364 CAGAGCAAAAACTGGATGCAC 58.331 47.619 0.00 0.00 42.45 4.57
2151 2441 1.000060 GCAGAGCAAAAACTGGATGCA 60.000 47.619 0.00 0.00 42.45 3.96
2152 2442 1.706443 GCAGAGCAAAAACTGGATGC 58.294 50.000 0.00 0.00 40.34 3.91
2153 2443 1.267806 ACGCAGAGCAAAAACTGGATG 59.732 47.619 0.00 0.00 35.05 3.51
2154 2444 1.609208 ACGCAGAGCAAAAACTGGAT 58.391 45.000 0.00 0.00 35.05 3.41
2155 2445 1.871039 GTACGCAGAGCAAAAACTGGA 59.129 47.619 0.00 0.00 35.05 3.86
2156 2446 1.398451 CGTACGCAGAGCAAAAACTGG 60.398 52.381 0.52 0.00 35.05 4.00
2157 2447 1.260561 ACGTACGCAGAGCAAAAACTG 59.739 47.619 16.72 0.00 37.22 3.16
2158 2448 1.578583 ACGTACGCAGAGCAAAAACT 58.421 45.000 16.72 0.00 0.00 2.66
2159 2449 2.716704 CGTACGTACGCAGAGCAAAAAC 60.717 50.000 32.36 0.00 43.14 2.43
2160 2450 1.452773 CGTACGTACGCAGAGCAAAAA 59.547 47.619 32.36 0.00 43.14 1.94
2161 2451 1.054574 CGTACGTACGCAGAGCAAAA 58.945 50.000 32.36 0.00 43.14 2.44
2162 2452 2.715758 CGTACGTACGCAGAGCAAA 58.284 52.632 32.36 0.00 43.14 3.68
2163 2453 4.445573 CGTACGTACGCAGAGCAA 57.554 55.556 32.36 0.00 43.14 3.91
2172 2462 0.863119 GCACATCCGACCGTACGTAC 60.863 60.000 15.90 15.90 0.00 3.67
2173 2463 1.026182 AGCACATCCGACCGTACGTA 61.026 55.000 15.21 0.00 0.00 3.57
2174 2464 2.180017 GCACATCCGACCGTACGT 59.820 61.111 15.21 2.02 0.00 3.57
2175 2465 1.872234 CAGCACATCCGACCGTACG 60.872 63.158 8.69 8.69 0.00 3.67
2176 2466 2.165301 GCAGCACATCCGACCGTAC 61.165 63.158 0.00 0.00 0.00 3.67
2177 2467 1.955495 ATGCAGCACATCCGACCGTA 61.955 55.000 0.00 0.00 31.52 4.02
2178 2468 3.315142 ATGCAGCACATCCGACCGT 62.315 57.895 0.00 0.00 31.52 4.83
2179 2469 2.512286 ATGCAGCACATCCGACCG 60.512 61.111 0.00 0.00 31.52 4.79
2186 2476 0.806868 CTTTGGACGATGCAGCACAT 59.193 50.000 1.53 0.00 43.54 3.21
2187 2477 0.250252 TCTTTGGACGATGCAGCACA 60.250 50.000 1.53 0.00 0.00 4.57
2188 2478 1.063174 GATCTTTGGACGATGCAGCAC 59.937 52.381 1.53 0.00 0.00 4.40
2189 2479 1.372582 GATCTTTGGACGATGCAGCA 58.627 50.000 1.53 0.00 0.00 4.41
2190 2480 0.302890 CGATCTTTGGACGATGCAGC 59.697 55.000 0.00 0.00 0.00 5.25
2191 2481 1.590238 GACGATCTTTGGACGATGCAG 59.410 52.381 0.00 0.00 0.00 4.41
2192 2482 1.640428 GACGATCTTTGGACGATGCA 58.360 50.000 0.00 0.00 0.00 3.96
2193 2483 0.931005 GGACGATCTTTGGACGATGC 59.069 55.000 0.00 0.00 0.00 3.91
2194 2484 2.293677 TGGACGATCTTTGGACGATG 57.706 50.000 0.00 0.00 0.00 3.84
2195 2485 3.133003 AGATTGGACGATCTTTGGACGAT 59.867 43.478 0.00 0.00 32.54 3.73
2196 2486 2.496070 AGATTGGACGATCTTTGGACGA 59.504 45.455 0.00 0.00 32.54 4.20
2197 2487 2.893637 AGATTGGACGATCTTTGGACG 58.106 47.619 0.00 0.00 32.54 4.79
2198 2488 4.003648 ACAAGATTGGACGATCTTTGGAC 58.996 43.478 11.24 0.00 42.24 4.02
2199 2489 4.253685 GACAAGATTGGACGATCTTTGGA 58.746 43.478 11.24 0.00 42.24 3.53
2200 2490 3.062639 CGACAAGATTGGACGATCTTTGG 59.937 47.826 11.24 5.41 42.24 3.28
2201 2491 3.679980 ACGACAAGATTGGACGATCTTTG 59.320 43.478 11.24 9.77 42.24 2.77
2202 2492 3.679980 CACGACAAGATTGGACGATCTTT 59.320 43.478 11.24 4.93 42.24 2.52
2203 2493 3.254060 CACGACAAGATTGGACGATCTT 58.746 45.455 16.67 8.64 44.94 2.40
2204 2494 2.231478 ACACGACAAGATTGGACGATCT 59.769 45.455 16.67 0.00 37.99 2.75
2205 2495 2.345641 CACACGACAAGATTGGACGATC 59.654 50.000 16.67 0.00 36.50 3.69
2206 2496 2.288825 ACACACGACAAGATTGGACGAT 60.289 45.455 16.67 6.06 36.50 3.73
2207 2497 1.067974 ACACACGACAAGATTGGACGA 59.932 47.619 16.67 0.00 36.50 4.20
2208 2498 1.497991 ACACACGACAAGATTGGACG 58.502 50.000 10.96 10.96 37.79 4.79
2209 2499 4.267928 GCTATACACACGACAAGATTGGAC 59.732 45.833 0.00 0.00 0.00 4.02
2210 2500 4.081917 TGCTATACACACGACAAGATTGGA 60.082 41.667 0.00 0.00 0.00 3.53
2211 2501 4.180817 TGCTATACACACGACAAGATTGG 58.819 43.478 0.00 0.00 0.00 3.16
2222 2512 5.959743 GCTGTACCAGTAGTGCTATACACAC 60.960 48.000 0.00 1.77 41.82 3.82
2223 2513 4.097437 GCTGTACCAGTAGTGCTATACACA 59.903 45.833 0.00 0.00 41.82 3.72
2224 2514 4.338682 AGCTGTACCAGTAGTGCTATACAC 59.661 45.833 0.00 0.00 40.67 2.90
2225 2515 4.533815 AGCTGTACCAGTAGTGCTATACA 58.466 43.478 0.00 4.98 33.43 2.29
2226 2516 6.821031 ATAGCTGTACCAGTAGTGCTATAC 57.179 41.667 16.45 0.00 40.52 1.47
2227 2517 7.687388 ACTATAGCTGTACCAGTAGTGCTATA 58.313 38.462 19.56 19.56 41.83 1.31
2228 2518 6.544650 ACTATAGCTGTACCAGTAGTGCTAT 58.455 40.000 19.47 19.47 43.38 2.97
2229 2519 5.938279 ACTATAGCTGTACCAGTAGTGCTA 58.062 41.667 0.00 11.59 37.41 3.49
2230 2520 4.794334 ACTATAGCTGTACCAGTAGTGCT 58.206 43.478 0.00 8.78 33.43 4.40
2231 2521 5.517322 AACTATAGCTGTACCAGTAGTGC 57.483 43.478 0.00 0.00 33.43 4.40
2258 2548 4.586841 TGCAACTATGGCTACCAAAGTTTT 59.413 37.500 0.00 0.00 36.95 2.43
2259 2550 4.022329 GTGCAACTATGGCTACCAAAGTTT 60.022 41.667 0.00 0.00 36.95 2.66
2271 2562 3.470709 CTCTACCCATGTGCAACTATGG 58.529 50.000 15.49 15.49 41.86 2.74
2385 2676 7.169645 TCAAAATTGTGAATAAGAAAGCACAGC 59.830 33.333 0.00 0.00 41.63 4.40
2498 2789 8.391075 AGAAACTACAGCTGTATTTAGCAAAA 57.609 30.769 26.22 2.67 46.07 2.44
2627 2929 6.363577 TGAGCACAAAAAGACAGAACTAAG 57.636 37.500 0.00 0.00 0.00 2.18
2638 2940 2.949714 ACGTCGATGAGCACAAAAAG 57.050 45.000 12.58 0.00 0.00 2.27
2735 3037 1.028330 CGTCAGCCATTGGTCTGCAT 61.028 55.000 17.31 0.00 30.75 3.96
3331 3634 6.267699 TCATACAATGACTGACGAAGGGATAT 59.732 38.462 0.00 0.00 33.59 1.63
3363 3666 1.668793 CCTGCACAGACATCGCACA 60.669 57.895 0.00 0.00 0.00 4.57
3544 4040 2.376109 TCTCTTACGATTTCCCGCTCT 58.624 47.619 0.00 0.00 0.00 4.09
3619 4115 2.264166 GACGAGCTGCTCTTGGCT 59.736 61.111 25.59 4.48 42.39 4.75
3895 4391 0.538584 TGATCTTCATGCTGCTCGGT 59.461 50.000 0.00 0.00 0.00 4.69
3961 4457 1.762460 GAGGGAGGCGAGGATGGAA 60.762 63.158 0.00 0.00 0.00 3.53
4016 4512 1.637402 GCCACGACGACGAAACAAA 59.363 52.632 15.32 0.00 42.66 2.83
4029 4525 5.917541 ATAATAAGATGGTAAACGCCACG 57.082 39.130 0.00 0.00 41.94 4.94
4030 4526 7.434013 CCAAAATAATAAGATGGTAAACGCCAC 59.566 37.037 0.00 0.00 41.94 5.01
4034 4530 8.228035 TCCCCAAAATAATAAGATGGTAAACG 57.772 34.615 0.00 0.00 0.00 3.60
4104 4600 6.325919 TGCTTTCTGGTTGGTTTTATGTAG 57.674 37.500 0.00 0.00 0.00 2.74
4110 4606 7.992608 AGATTAATTTGCTTTCTGGTTGGTTTT 59.007 29.630 0.00 0.00 0.00 2.43
4142 4638 3.665409 CGCAAGTGATACTTTGCTTTGTG 59.335 43.478 7.49 0.00 36.03 3.33
4163 4659 4.672409 ACTTTCTTCAAAAGCTGGAAACG 58.328 39.130 0.00 0.00 0.00 3.60
4198 4694 3.321682 CCACATCTGCCAAAGGAGAAAAA 59.678 43.478 0.00 0.00 0.00 1.94
4200 4696 2.108075 TCCACATCTGCCAAAGGAGAAA 59.892 45.455 0.00 0.00 0.00 2.52
4201 4697 1.704628 TCCACATCTGCCAAAGGAGAA 59.295 47.619 0.00 0.00 0.00 2.87
4202 4698 1.361204 TCCACATCTGCCAAAGGAGA 58.639 50.000 0.00 0.00 0.00 3.71
4203 4699 2.431954 ATCCACATCTGCCAAAGGAG 57.568 50.000 0.00 0.00 0.00 3.69
4204 4700 3.181440 GGATATCCACATCTGCCAAAGGA 60.181 47.826 17.34 0.00 35.64 3.36
4319 4851 1.049289 AGGGGAGTCGGATACAAGCC 61.049 60.000 0.00 0.00 0.00 4.35
4397 4932 5.501156 GACCTACTTTTCCTTCATCCACAT 58.499 41.667 0.00 0.00 0.00 3.21
4474 5009 5.529800 ACCGGCTAAATATCAACCAACATAC 59.470 40.000 0.00 0.00 0.00 2.39
4504 5039 3.993584 CCCGAAACCGGTCGTCCA 61.994 66.667 8.04 0.00 45.38 4.02
4508 5043 2.609759 CCAAACCCGAAACCGGTCG 61.610 63.158 8.04 8.40 45.38 4.79
4531 5077 2.126596 CAGCCACACAAACAGCCCA 61.127 57.895 0.00 0.00 0.00 5.36
4534 5080 1.299620 CTGCAGCCACACAAACAGC 60.300 57.895 0.00 0.00 0.00 4.40
4535 5081 0.309922 CTCTGCAGCCACACAAACAG 59.690 55.000 9.47 0.00 0.00 3.16
4536 5082 0.394216 ACTCTGCAGCCACACAAACA 60.394 50.000 9.47 0.00 0.00 2.83
4537 5083 0.029834 CACTCTGCAGCCACACAAAC 59.970 55.000 9.47 0.00 0.00 2.93
4538 5084 1.727511 GCACTCTGCAGCCACACAAA 61.728 55.000 9.47 0.00 44.26 2.83
4635 5187 4.579869 CTGACCAAAGCAACTACAGGTAT 58.420 43.478 0.00 0.00 0.00 2.73
4719 5271 9.190317 GGAAACCTTCATCCTCTTTTTGTATAT 57.810 33.333 0.00 0.00 32.75 0.86
4720 5272 8.390921 AGGAAACCTTCATCCTCTTTTTGTATA 58.609 33.333 0.00 0.00 42.44 1.47
4721 5273 7.241628 AGGAAACCTTCATCCTCTTTTTGTAT 58.758 34.615 0.00 0.00 42.44 2.29
4722 5274 6.610830 AGGAAACCTTCATCCTCTTTTTGTA 58.389 36.000 0.00 0.00 42.44 2.41
4723 5275 5.458595 AGGAAACCTTCATCCTCTTTTTGT 58.541 37.500 0.00 0.00 42.44 2.83
4732 5284 7.224949 CGAATACTTTCTAGGAAACCTTCATCC 59.775 40.741 0.00 0.00 34.61 3.51
4733 5285 7.764901 ACGAATACTTTCTAGGAAACCTTCATC 59.235 37.037 0.00 0.00 34.61 2.92
4735 5287 6.872020 CACGAATACTTTCTAGGAAACCTTCA 59.128 38.462 0.00 0.00 34.61 3.02
4739 5291 4.331992 GGCACGAATACTTTCTAGGAAACC 59.668 45.833 0.00 0.00 0.00 3.27
4768 5320 2.139917 ACGCTTGCAATAGAAACGTGA 58.860 42.857 0.00 0.00 0.00 4.35
4788 5340 1.554617 TCTAGTGCATACTGCCAGCAA 59.445 47.619 0.00 0.00 44.23 3.91
4802 5354 4.520111 CAGATGGATGGAGAGACTCTAGTG 59.480 50.000 4.57 0.00 0.00 2.74
4803 5355 4.728772 CAGATGGATGGAGAGACTCTAGT 58.271 47.826 4.57 0.00 0.00 2.57
4804 5356 3.507233 GCAGATGGATGGAGAGACTCTAG 59.493 52.174 4.57 0.00 0.00 2.43
4805 5357 3.139957 AGCAGATGGATGGAGAGACTCTA 59.860 47.826 4.57 0.00 0.00 2.43
4806 5358 2.091166 AGCAGATGGATGGAGAGACTCT 60.091 50.000 4.14 4.14 0.00 3.24
4807 5359 2.036217 CAGCAGATGGATGGAGAGACTC 59.964 54.545 0.00 0.00 0.00 3.36
4808 5360 2.040939 CAGCAGATGGATGGAGAGACT 58.959 52.381 0.00 0.00 0.00 3.24
4809 5361 1.761784 ACAGCAGATGGATGGAGAGAC 59.238 52.381 0.00 0.00 37.17 3.36
4810 5362 1.761198 CACAGCAGATGGATGGAGAGA 59.239 52.381 0.00 0.00 37.17 3.10
4811 5363 1.761198 TCACAGCAGATGGATGGAGAG 59.239 52.381 0.00 0.00 37.17 3.20
4812 5364 1.870064 TCACAGCAGATGGATGGAGA 58.130 50.000 0.00 0.00 37.17 3.71
4813 5365 2.495084 CATCACAGCAGATGGATGGAG 58.505 52.381 8.49 0.00 41.29 3.86
4814 5366 2.632987 CATCACAGCAGATGGATGGA 57.367 50.000 8.49 0.00 41.29 3.41
4821 5373 3.479489 TGACAAACACATCACAGCAGAT 58.521 40.909 0.00 0.00 0.00 2.90
4822 5374 2.916640 TGACAAACACATCACAGCAGA 58.083 42.857 0.00 0.00 0.00 4.26
4834 5386 5.867903 AAATTCATTGGAGGTGACAAACA 57.132 34.783 0.00 0.00 0.00 2.83
4859 5411 3.495753 GCCCTCGACGAGTTTCTTAAAAA 59.504 43.478 22.61 0.00 0.00 1.94
4860 5412 3.062042 GCCCTCGACGAGTTTCTTAAAA 58.938 45.455 22.61 0.00 0.00 1.52
4861 5413 2.036217 TGCCCTCGACGAGTTTCTTAAA 59.964 45.455 22.61 0.00 0.00 1.52
4862 5414 1.614903 TGCCCTCGACGAGTTTCTTAA 59.385 47.619 22.61 0.00 0.00 1.85
4863 5415 1.201647 CTGCCCTCGACGAGTTTCTTA 59.798 52.381 22.61 3.28 0.00 2.10
4864 5416 0.038159 CTGCCCTCGACGAGTTTCTT 60.038 55.000 22.61 0.00 0.00 2.52
4865 5417 1.179814 ACTGCCCTCGACGAGTTTCT 61.180 55.000 22.61 0.00 0.00 2.52
4866 5418 1.009389 CACTGCCCTCGACGAGTTTC 61.009 60.000 22.61 11.71 0.00 2.78
4867 5419 1.006102 CACTGCCCTCGACGAGTTT 60.006 57.895 22.61 0.09 0.00 2.66
4868 5420 2.651361 CACTGCCCTCGACGAGTT 59.349 61.111 22.61 0.00 0.00 3.01
4869 5421 3.374402 CCACTGCCCTCGACGAGT 61.374 66.667 22.61 2.41 0.00 4.18
4870 5422 4.803426 GCCACTGCCCTCGACGAG 62.803 72.222 18.08 18.08 0.00 4.18
4873 5425 3.537206 AACTGCCACTGCCCTCGAC 62.537 63.158 0.00 0.00 36.33 4.20
4874 5426 3.240134 GAACTGCCACTGCCCTCGA 62.240 63.158 0.00 0.00 36.33 4.04
4875 5427 2.743928 GAACTGCCACTGCCCTCG 60.744 66.667 0.00 0.00 36.33 4.63
4876 5428 0.610232 AATGAACTGCCACTGCCCTC 60.610 55.000 0.00 0.00 36.33 4.30
4877 5429 0.896940 CAATGAACTGCCACTGCCCT 60.897 55.000 0.00 0.00 36.33 5.19
4878 5430 0.895100 TCAATGAACTGCCACTGCCC 60.895 55.000 0.00 0.00 36.33 5.36
4879 5431 0.961019 TTCAATGAACTGCCACTGCC 59.039 50.000 0.00 0.00 36.33 4.85
4880 5432 2.798976 TTTCAATGAACTGCCACTGC 57.201 45.000 0.00 0.00 38.26 4.40
4881 5433 4.572985 TCTTTTCAATGAACTGCCACTG 57.427 40.909 0.00 0.00 0.00 3.66
4882 5434 4.219288 GGATCTTTTCAATGAACTGCCACT 59.781 41.667 0.00 0.00 0.00 4.00
4883 5435 4.022068 TGGATCTTTTCAATGAACTGCCAC 60.022 41.667 0.00 0.00 0.00 5.01
4884 5436 4.151121 TGGATCTTTTCAATGAACTGCCA 58.849 39.130 0.00 0.00 0.00 4.92
4885 5437 4.789012 TGGATCTTTTCAATGAACTGCC 57.211 40.909 0.00 0.00 0.00 4.85
4886 5438 7.172019 ACAAATTGGATCTTTTCAATGAACTGC 59.828 33.333 0.00 0.00 34.28 4.40
4887 5439 8.597662 ACAAATTGGATCTTTTCAATGAACTG 57.402 30.769 0.00 0.00 34.28 3.16
4901 5453 9.358872 GGTCTGATTTTTCTTACAAATTGGATC 57.641 33.333 0.00 0.00 0.00 3.36
4902 5454 8.869109 TGGTCTGATTTTTCTTACAAATTGGAT 58.131 29.630 0.00 0.00 0.00 3.41
4903 5455 8.243961 TGGTCTGATTTTTCTTACAAATTGGA 57.756 30.769 0.00 0.00 0.00 3.53
4904 5456 8.885494 TTGGTCTGATTTTTCTTACAAATTGG 57.115 30.769 0.00 0.00 0.00 3.16
4929 5481 1.687563 ACCAGCGCTGTTAGGTTTTT 58.312 45.000 33.75 1.55 0.00 1.94
4930 5482 1.687563 AACCAGCGCTGTTAGGTTTT 58.312 45.000 33.75 9.67 41.33 2.43
4931 5483 1.687563 AAACCAGCGCTGTTAGGTTT 58.312 45.000 33.75 30.40 46.43 3.27
4932 5484 2.554370 TAAACCAGCGCTGTTAGGTT 57.446 45.000 33.75 26.93 45.73 3.50
4933 5485 2.554370 TTAAACCAGCGCTGTTAGGT 57.446 45.000 33.75 22.82 35.47 3.08
4934 5486 3.907894 TTTTAAACCAGCGCTGTTAGG 57.092 42.857 33.75 22.13 0.00 2.69
4935 5487 8.460831 AAAATATTTTAAACCAGCGCTGTTAG 57.539 30.769 33.75 21.86 0.00 2.34
4937 5489 8.996024 ATAAAATATTTTAAACCAGCGCTGTT 57.004 26.923 33.75 24.63 36.35 3.16
4938 5490 8.996024 AATAAAATATTTTAAACCAGCGCTGT 57.004 26.923 33.75 19.55 36.35 4.40
4939 5491 9.687717 CAAATAAAATATTTTAAACCAGCGCTG 57.312 29.630 30.52 30.52 36.35 5.18
4940 5492 9.646427 TCAAATAAAATATTTTAAACCAGCGCT 57.354 25.926 21.33 2.64 36.35 5.92
4957 5509 9.638239 GTCAGCAACTTCCATATTCAAATAAAA 57.362 29.630 0.00 0.00 0.00 1.52
4958 5510 8.801299 TGTCAGCAACTTCCATATTCAAATAAA 58.199 29.630 0.00 0.00 0.00 1.40
4959 5511 8.347004 TGTCAGCAACTTCCATATTCAAATAA 57.653 30.769 0.00 0.00 0.00 1.40
4960 5512 7.936496 TGTCAGCAACTTCCATATTCAAATA 57.064 32.000 0.00 0.00 0.00 1.40
4961 5513 6.839124 TGTCAGCAACTTCCATATTCAAAT 57.161 33.333 0.00 0.00 0.00 2.32
4962 5514 6.839124 ATGTCAGCAACTTCCATATTCAAA 57.161 33.333 0.00 0.00 0.00 2.69
4963 5515 9.056005 GTATATGTCAGCAACTTCCATATTCAA 57.944 33.333 0.00 0.00 32.55 2.69
4964 5516 8.210265 TGTATATGTCAGCAACTTCCATATTCA 58.790 33.333 0.00 0.00 32.55 2.57
4965 5517 8.607441 TGTATATGTCAGCAACTTCCATATTC 57.393 34.615 0.00 0.00 32.55 1.75
4969 5521 9.881649 CTATATGTATATGTCAGCAACTTCCAT 57.118 33.333 0.00 0.00 0.00 3.41
4970 5522 8.314021 CCTATATGTATATGTCAGCAACTTCCA 58.686 37.037 0.00 0.00 0.00 3.53
4971 5523 8.531982 TCCTATATGTATATGTCAGCAACTTCC 58.468 37.037 0.00 0.00 0.00 3.46
4973 5525 9.881649 CATCCTATATGTATATGTCAGCAACTT 57.118 33.333 0.00 0.00 0.00 2.66
4974 5526 7.984050 GCATCCTATATGTATATGTCAGCAACT 59.016 37.037 0.00 0.00 0.00 3.16
4975 5527 7.225538 GGCATCCTATATGTATATGTCAGCAAC 59.774 40.741 0.00 0.00 0.00 4.17
4976 5528 7.275183 GGCATCCTATATGTATATGTCAGCAA 58.725 38.462 0.00 0.00 0.00 3.91
4977 5529 6.461509 CGGCATCCTATATGTATATGTCAGCA 60.462 42.308 0.00 0.00 0.00 4.41
4978 5530 5.923114 CGGCATCCTATATGTATATGTCAGC 59.077 44.000 0.00 0.00 0.00 4.26
4979 5531 7.277174 TCGGCATCCTATATGTATATGTCAG 57.723 40.000 0.00 0.00 0.00 3.51
4980 5532 7.839680 ATCGGCATCCTATATGTATATGTCA 57.160 36.000 0.00 0.00 0.00 3.58
4981 5533 9.847706 CTTATCGGCATCCTATATGTATATGTC 57.152 37.037 0.00 0.00 0.00 3.06
4982 5534 9.368416 ACTTATCGGCATCCTATATGTATATGT 57.632 33.333 0.00 0.00 0.00 2.29
4983 5535 9.631452 CACTTATCGGCATCCTATATGTATATG 57.369 37.037 0.00 0.00 0.00 1.78
4984 5536 8.307483 GCACTTATCGGCATCCTATATGTATAT 58.693 37.037 0.00 0.00 0.00 0.86
4985 5537 7.255836 GGCACTTATCGGCATCCTATATGTATA 60.256 40.741 0.00 0.00 0.00 1.47
4986 5538 6.463049 GGCACTTATCGGCATCCTATATGTAT 60.463 42.308 0.00 0.00 0.00 2.29
4987 5539 5.163447 GGCACTTATCGGCATCCTATATGTA 60.163 44.000 0.00 0.00 0.00 2.29
4988 5540 4.383118 GGCACTTATCGGCATCCTATATGT 60.383 45.833 0.00 0.00 0.00 2.29
4989 5541 4.122776 GGCACTTATCGGCATCCTATATG 58.877 47.826 0.00 0.00 0.00 1.78
4990 5542 3.774766 TGGCACTTATCGGCATCCTATAT 59.225 43.478 0.00 0.00 33.43 0.86
4991 5543 3.056107 GTGGCACTTATCGGCATCCTATA 60.056 47.826 11.13 0.00 41.40 1.31
5022 5574 0.181350 GTGGGCAGACTCCCTAATGG 59.819 60.000 10.28 0.00 46.67 3.16
5024 5576 0.912486 GTGTGGGCAGACTCCCTAAT 59.088 55.000 10.28 0.00 46.67 1.73
5045 5597 7.033530 TGTTCCTTTTATACACCACACAAAG 57.966 36.000 0.00 0.00 0.00 2.77
5129 5770 1.079405 GCGTGTGAAAGGGATCCGA 60.079 57.895 5.45 0.00 0.00 4.55
5131 5772 1.375523 ACGCGTGTGAAAGGGATCC 60.376 57.895 12.93 1.92 0.00 3.36
5338 5981 3.769739 ACTGTAGTTGAGCAACCATGA 57.230 42.857 9.56 0.00 42.06 3.07
5354 5997 1.003580 CAGACCCTACATGGCAACTGT 59.996 52.381 0.00 0.00 37.61 3.55
5368 6082 2.094130 GCAACTACAGTAGACCAGACCC 60.094 54.545 14.94 0.00 0.00 4.46
5417 6291 4.755411 TCAACTGCCTAGTGTTAGTATGC 58.245 43.478 0.00 0.00 37.19 3.14
5510 6548 2.715046 CTGGTGTACATGGCAACTCAT 58.285 47.619 0.00 0.00 37.61 2.90
5511 6549 1.881925 GCTGGTGTACATGGCAACTCA 60.882 52.381 0.00 2.01 37.61 3.41
5512 6550 0.804989 GCTGGTGTACATGGCAACTC 59.195 55.000 0.00 0.36 37.61 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.