Multiple sequence alignment - TraesCS5B01G515900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G515900 chr5B 100.000 8245 0 0 904 9148 680345631 680353875 0.000000e+00 15226.0
1 TraesCS5B01G515900 chr5B 100.000 693 0 0 1 693 680344728 680345420 0.000000e+00 1280.0
2 TraesCS5B01G515900 chr5B 97.059 170 2 3 5512 5678 607474646 607474815 5.410000e-72 283.0
3 TraesCS5B01G515900 chr4A 93.240 2648 122 23 5674 8285 629869599 629866973 0.000000e+00 3845.0
4 TraesCS5B01G515900 chr4A 92.938 2549 108 20 907 3439 629874651 629872159 0.000000e+00 3644.0
5 TraesCS5B01G515900 chr4A 92.781 1316 61 17 3446 4730 629871934 629870622 0.000000e+00 1873.0
6 TraesCS5B01G515900 chr4A 92.047 767 39 8 4732 5486 629870508 629869752 0.000000e+00 1059.0
7 TraesCS5B01G515900 chr4A 85.321 545 66 8 85 627 629900668 629900136 1.340000e-152 551.0
8 TraesCS5B01G515900 chr4A 82.073 463 57 14 8679 9128 629866215 629865766 1.120000e-98 372.0
9 TraesCS5B01G515900 chr4A 93.939 66 4 0 25 90 629909579 629909514 5.840000e-17 100.0
10 TraesCS5B01G515900 chr5D 94.161 2449 95 21 1012 3445 538775106 538777521 0.000000e+00 3687.0
11 TraesCS5B01G515900 chr5D 91.560 2429 117 30 6022 8384 538780204 538782610 0.000000e+00 3269.0
12 TraesCS5B01G515900 chr5D 91.441 1332 69 22 3437 4730 538777669 538778993 0.000000e+00 1786.0
13 TraesCS5B01G515900 chr5D 95.070 791 28 11 4732 5515 538779107 538779893 0.000000e+00 1234.0
14 TraesCS5B01G515900 chr5D 85.484 682 86 7 1 679 538774164 538774835 0.000000e+00 699.0
15 TraesCS5B01G515900 chr5D 93.796 274 14 1 5675 5945 538779895 538780168 8.550000e-110 409.0
16 TraesCS5B01G515900 chr5D 95.954 173 4 3 5515 5685 74461284 74461455 2.520000e-70 278.0
17 TraesCS5B01G515900 chr5D 82.833 233 31 9 8677 8905 538783034 538783261 5.600000e-47 200.0
18 TraesCS5B01G515900 chr5D 91.200 125 8 2 904 1025 538774962 538775086 5.680000e-37 167.0
19 TraesCS5B01G515900 chr5D 93.182 44 3 0 3982 4025 63616027 63616070 2.130000e-06 65.8
20 TraesCS5B01G515900 chr7D 96.532 173 4 2 5509 5679 459392092 459391920 1.500000e-72 285.0
21 TraesCS5B01G515900 chr5A 98.171 164 2 1 5518 5680 382566796 382566633 1.500000e-72 285.0
22 TraesCS5B01G515900 chr2B 97.590 166 3 1 5513 5677 39787884 39787719 5.410000e-72 283.0
23 TraesCS5B01G515900 chr6D 96.471 170 3 3 5518 5686 392896981 392897148 2.520000e-70 278.0
24 TraesCS5B01G515900 chr6D 91.304 46 3 1 3984 4028 363038132 363038177 2.760000e-05 62.1
25 TraesCS5B01G515900 chr4D 95.455 176 4 4 5506 5678 477898789 477898963 2.520000e-70 278.0
26 TraesCS5B01G515900 chr4B 96.988 166 3 2 5518 5681 488893128 488893293 2.520000e-70 278.0
27 TraesCS5B01G515900 chr3D 94.798 173 6 3 5506 5676 591102407 591102578 5.450000e-67 267.0
28 TraesCS5B01G515900 chr3D 95.122 41 2 0 3984 4024 567663227 567663267 2.130000e-06 65.8
29 TraesCS5B01G515900 chr3D 95.122 41 2 0 3984 4024 568236483 568236443 2.130000e-06 65.8
30 TraesCS5B01G515900 chr6A 97.436 39 1 0 3984 4022 596583406 596583444 5.930000e-07 67.6
31 TraesCS5B01G515900 chr6A 91.111 45 4 0 3984 4028 214199907 214199863 2.760000e-05 62.1
32 TraesCS5B01G515900 chr1A 95.238 42 2 0 3984 4025 439847050 439847009 5.930000e-07 67.6
33 TraesCS5B01G515900 chr7B 95.238 42 1 1 3981 4021 419032232 419032273 2.130000e-06 65.8
34 TraesCS5B01G515900 chr1D 91.489 47 3 1 3984 4029 370323687 370323641 7.670000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G515900 chr5B 680344728 680353875 9147 False 8253.000 15226 100.000000 1 9148 2 chr5B.!!$F2 9147
1 TraesCS5B01G515900 chr4A 629865766 629874651 8885 True 2158.600 3845 90.615800 907 9128 5 chr4A.!!$R3 8221
2 TraesCS5B01G515900 chr4A 629900136 629900668 532 True 551.000 551 85.321000 85 627 1 chr4A.!!$R1 542
3 TraesCS5B01G515900 chr5D 538774164 538783261 9097 False 1431.375 3687 90.693125 1 8905 8 chr5D.!!$F3 8904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 655 0.672401 TGGCGTTCGGGATTCACTTC 60.672 55.000 0.00 0.0 0.00 3.01 F
1466 1530 0.533755 CCGATTGGGACATCTGGCTC 60.534 60.000 0.00 0.0 39.30 4.70 F
2799 2873 0.260230 TCTTTTCCCCAGCACCAACA 59.740 50.000 0.00 0.0 0.00 3.33 F
3287 3372 0.737219 GGATGCAAGATCCAGTGTGC 59.263 55.000 0.00 0.0 38.09 4.57 F
4360 4694 0.850100 TTGGTGGACATGGAACTGGT 59.150 50.000 0.00 0.0 0.00 4.00 F
5399 5872 2.030805 CCCCTACTAACGGCGTACATAC 60.031 54.545 15.20 0.0 0.00 2.39 F
5680 6278 2.311243 AGGAACGGAGGGAGTAGTTACT 59.689 50.000 0.00 0.0 39.71 2.24 F
6923 7556 1.970640 GTTGGCTTCCAAGGAAATGGT 59.029 47.619 2.78 0.0 44.82 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1845 0.766131 TGGAACGAAGGGCTTTACCA 59.234 50.000 0.0 0.00 42.05 3.25 R
2899 2974 0.739462 ATCGAATTGCGCGGAACAGA 60.739 50.000 17.4 15.49 40.61 3.41 R
4261 4595 1.411612 ACCGAAACTGGACGAGAAAGT 59.588 47.619 0.0 0.00 0.00 2.66 R
5019 5476 0.037419 GCCACCACAAATCGCCAAAT 60.037 50.000 0.0 0.00 0.00 2.32 R
6010 6611 0.171007 CATGATTGGCGGGACACAAC 59.829 55.000 0.0 0.00 0.00 3.32 R
6440 7071 0.108804 GAACGTCAATCGGGCAGAGA 60.109 55.000 0.0 0.00 44.69 3.10 R
7136 7773 1.140052 AGTCGTGTCATTGTTCCACCA 59.860 47.619 0.0 0.00 0.00 4.17 R
8479 9297 0.655733 CTTTGTCGCACTTGTCGGTT 59.344 50.000 0.0 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.063934 AGACCTTGGTAGTGGCTATAATAAC 57.936 40.000 0.00 0.00 0.00 1.89
30 31 6.042897 AGACCTTGGTAGTGGCTATAATAACC 59.957 42.308 0.00 0.00 0.00 2.85
37 38 5.197682 AGTGGCTATAATAACCGTGACTC 57.802 43.478 0.00 0.00 0.00 3.36
95 96 3.058293 CCAACTAACACCTACGTACGTCA 60.058 47.826 26.53 10.54 0.00 4.35
102 103 3.188048 ACACCTACGTACGTCAAAGAGAG 59.812 47.826 26.53 14.42 0.00 3.20
120 121 5.802465 AGAGAGCTTCAAATGAGATGAACA 58.198 37.500 0.00 0.00 33.47 3.18
121 122 5.875910 AGAGAGCTTCAAATGAGATGAACAG 59.124 40.000 0.00 0.00 33.47 3.16
122 123 4.395542 AGAGCTTCAAATGAGATGAACAGC 59.604 41.667 0.00 0.00 33.47 4.40
135 136 4.636206 AGATGAACAGCGGGAGAAAATTAC 59.364 41.667 0.00 0.00 0.00 1.89
139 140 4.546829 ACAGCGGGAGAAAATTACTGTA 57.453 40.909 0.00 0.00 35.27 2.74
167 169 6.929049 ACTTCAAACGACTAATTCAGACATGA 59.071 34.615 0.00 0.00 0.00 3.07
174 176 7.212976 ACGACTAATTCAGACATGATAGCATT 58.787 34.615 0.00 0.00 34.73 3.56
175 177 7.712639 ACGACTAATTCAGACATGATAGCATTT 59.287 33.333 0.00 0.00 34.73 2.32
186 188 7.615365 AGACATGATAGCATTTTAGGGTTCAAA 59.385 33.333 0.00 0.00 30.68 2.69
190 192 8.133024 TGATAGCATTTTAGGGTTCAAATTGT 57.867 30.769 0.00 0.00 0.00 2.71
198 200 2.360801 AGGGTTCAAATTGTTCACACCG 59.639 45.455 0.00 0.00 0.00 4.94
214 216 1.332375 CACCGGGCATATTAAACACGG 59.668 52.381 6.32 0.61 44.86 4.94
220 222 3.004315 GGGCATATTAAACACGGTGGATG 59.996 47.826 13.48 6.98 0.00 3.51
228 230 1.182667 ACACGGTGGATGATTCGAGA 58.817 50.000 13.48 0.00 0.00 4.04
229 231 1.757118 ACACGGTGGATGATTCGAGAT 59.243 47.619 13.48 0.00 0.00 2.75
236 238 5.065218 CGGTGGATGATTCGAGATTTTTCTT 59.935 40.000 0.00 0.00 0.00 2.52
238 240 6.261118 GTGGATGATTCGAGATTTTTCTTGG 58.739 40.000 0.00 0.00 0.00 3.61
240 242 6.434028 TGGATGATTCGAGATTTTTCTTGGTT 59.566 34.615 0.00 0.00 0.00 3.67
241 243 6.749118 GGATGATTCGAGATTTTTCTTGGTTG 59.251 38.462 0.00 0.00 0.00 3.77
242 244 6.875948 TGATTCGAGATTTTTCTTGGTTGA 57.124 33.333 0.00 0.00 0.00 3.18
243 245 6.902341 TGATTCGAGATTTTTCTTGGTTGAG 58.098 36.000 0.00 0.00 0.00 3.02
244 246 6.710295 TGATTCGAGATTTTTCTTGGTTGAGA 59.290 34.615 0.00 0.00 0.00 3.27
245 247 6.545504 TTCGAGATTTTTCTTGGTTGAGAG 57.454 37.500 0.00 0.00 0.00 3.20
305 307 0.865769 CACACGTCCTTCCTTTTCGG 59.134 55.000 0.00 0.00 0.00 4.30
319 321 3.129287 CCTTTTCGGAATGTTAGCAGCAT 59.871 43.478 0.00 0.00 33.16 3.79
332 334 7.337480 TGTTAGCAGCATCATTGTCATATTT 57.663 32.000 0.00 0.00 0.00 1.40
340 342 5.341462 GCATCATTGTCATATTTCATGTCGC 59.659 40.000 0.00 0.00 0.00 5.19
341 343 5.081888 TCATTGTCATATTTCATGTCGCG 57.918 39.130 0.00 0.00 0.00 5.87
360 362 5.225129 GTCGCGTTTGATTACATCATTTCAC 59.775 40.000 5.77 0.00 39.39 3.18
370 372 7.491372 TGATTACATCATTTCACGAGGTTAGAC 59.509 37.037 0.00 0.00 33.59 2.59
371 373 5.407407 ACATCATTTCACGAGGTTAGACT 57.593 39.130 0.00 0.00 0.00 3.24
386 388 4.445879 GGTTAGACTTGAGGAAACCCTTGT 60.446 45.833 0.00 0.00 34.75 3.16
388 390 2.143925 GACTTGAGGAAACCCTTGTCG 58.856 52.381 0.00 0.00 33.25 4.35
403 405 5.768164 ACCCTTGTCGTGAACTTTCATTTAT 59.232 36.000 0.00 0.00 39.73 1.40
454 456 9.445786 GAGATTTCTTCATAGAACTAGAACGAG 57.554 37.037 0.00 0.00 40.04 4.18
457 459 9.959749 ATTTCTTCATAGAACTAGAACGAGATC 57.040 33.333 0.00 0.00 40.04 2.75
470 472 6.662865 AGAACGAGATCAGATGGACATAAT 57.337 37.500 0.00 0.00 0.00 1.28
471 473 6.686630 AGAACGAGATCAGATGGACATAATC 58.313 40.000 0.00 0.00 0.00 1.75
473 475 7.667635 AGAACGAGATCAGATGGACATAATCTA 59.332 37.037 0.00 0.00 33.03 1.98
479 481 8.549731 AGATCAGATGGACATAATCTATTGCAT 58.450 33.333 0.00 0.00 33.03 3.96
500 506 7.816640 TGCATGAAGTAGAATTTTCTAACACC 58.183 34.615 0.00 0.00 41.12 4.16
502 508 7.121315 GCATGAAGTAGAATTTTCTAACACCCT 59.879 37.037 0.00 0.00 41.12 4.34
503 509 9.014297 CATGAAGTAGAATTTTCTAACACCCTT 57.986 33.333 1.71 1.77 41.12 3.95
544 550 7.410174 TCTTTGAAATAAAGAGGCCTTCCATA 58.590 34.615 6.77 0.00 32.90 2.74
582 588 3.941483 CTCCGCAGAAACAACCTATGATT 59.059 43.478 0.00 0.00 0.00 2.57
593 599 4.666907 ACAACCTATGATTGATCATCCCCT 59.333 41.667 9.61 0.00 43.72 4.79
599 606 6.845446 CCTATGATTGATCATCCCCTCTATCT 59.155 42.308 9.61 0.00 43.72 1.98
621 628 4.888917 TGAAGAATCACACGGTAATCACA 58.111 39.130 0.00 0.00 0.00 3.58
637 644 3.995669 CACACACCGTGGCGTTCG 61.996 66.667 3.03 0.00 42.34 3.95
647 654 0.953960 GTGGCGTTCGGGATTCACTT 60.954 55.000 0.00 0.00 0.00 3.16
648 655 0.672401 TGGCGTTCGGGATTCACTTC 60.672 55.000 0.00 0.00 0.00 3.01
670 677 9.136323 ACTTCTTCCTTCAACTTCAATATTGTT 57.864 29.630 14.97 0.00 0.00 2.83
672 679 8.110860 TCTTCCTTCAACTTCAATATTGTTCC 57.889 34.615 14.97 0.00 0.00 3.62
690 719 3.197927 TCCCCCTTTGGCACATTTTAT 57.802 42.857 0.00 0.00 39.30 1.40
691 720 2.836981 TCCCCCTTTGGCACATTTTATG 59.163 45.455 0.00 0.00 39.30 1.90
692 721 2.836981 CCCCCTTTGGCACATTTTATGA 59.163 45.455 0.00 0.00 39.30 2.15
925 954 4.464069 TGGGTTTGAAGTTTGGTTTGAG 57.536 40.909 0.00 0.00 0.00 3.02
930 961 5.163550 GGTTTGAAGTTTGGTTTGAGTAGCT 60.164 40.000 0.00 0.00 0.00 3.32
932 963 4.523083 TGAAGTTTGGTTTGAGTAGCTGT 58.477 39.130 0.00 0.00 0.00 4.40
1260 1324 4.564110 CCCGATCCTTTCCGGCCC 62.564 72.222 0.00 0.00 44.07 5.80
1451 1515 2.364842 AGCTCAGCTCCACCCGAT 60.365 61.111 0.00 0.00 30.62 4.18
1464 1528 4.147701 CCGATTGGGACATCTGGC 57.852 61.111 0.00 0.00 39.30 4.85
1465 1529 1.528824 CCGATTGGGACATCTGGCT 59.471 57.895 0.00 0.00 39.30 4.75
1466 1530 0.533755 CCGATTGGGACATCTGGCTC 60.534 60.000 0.00 0.00 39.30 4.70
1467 1531 0.533755 CGATTGGGACATCTGGCTCC 60.534 60.000 0.00 0.00 39.30 4.70
1468 1532 0.533755 GATTGGGACATCTGGCTCCG 60.534 60.000 0.00 0.00 39.30 4.63
1495 1559 2.814341 CTGCTCTGCCGCTGTCTG 60.814 66.667 0.00 0.00 0.00 3.51
1711 1775 1.694150 TGTCTAGTGGAGTTTGCAGCT 59.306 47.619 0.00 0.00 0.00 4.24
1781 1845 1.203523 GACTTCTGGATGCTCGACACT 59.796 52.381 0.00 0.00 0.00 3.55
1793 1857 1.002087 CTCGACACTGGTAAAGCCCTT 59.998 52.381 0.00 0.00 36.04 3.95
1808 1872 1.594833 CCTTCGTTCCATCGACCCA 59.405 57.895 0.00 0.00 39.58 4.51
1811 1875 2.356135 CTTCGTTCCATCGACCCATTT 58.644 47.619 0.00 0.00 39.58 2.32
1851 1915 5.202640 GCTCGTTTTGTTTCGAATTGTACT 58.797 37.500 0.00 0.00 35.69 2.73
1852 1916 5.113529 GCTCGTTTTGTTTCGAATTGTACTG 59.886 40.000 0.00 0.00 35.69 2.74
1854 1918 5.293814 TCGTTTTGTTTCGAATTGTACTGGA 59.706 36.000 0.00 0.00 33.13 3.86
1866 1930 3.443099 TGTACTGGAGATTCAGCGATG 57.557 47.619 0.00 0.00 38.26 3.84
1962 2026 3.202706 GATTTGCCGTCTCCCCGC 61.203 66.667 0.00 0.00 0.00 6.13
2025 2089 3.689161 TCATGTAAGCGATTTGTTCCCTG 59.311 43.478 0.00 0.00 0.00 4.45
2376 2442 5.131977 TGCTTATATTTGGAGGCAGAGGTAA 59.868 40.000 0.00 0.00 0.00 2.85
2406 2472 5.722021 TCCTTAATTTGGTTCTTCTTGGC 57.278 39.130 0.00 0.00 0.00 4.52
2532 2606 3.194542 AGCTGGCTGACACTAGAAAGTAG 59.805 47.826 0.00 0.00 33.48 2.57
2535 2609 5.135508 TGGCTGACACTAGAAAGTAGAAC 57.864 43.478 0.00 0.00 33.48 3.01
2537 2611 5.304614 TGGCTGACACTAGAAAGTAGAACTT 59.695 40.000 0.00 0.00 40.80 2.66
2596 2670 6.865205 AGATGATTGAAACTAAAGTGCTTTGC 59.135 34.615 7.38 0.00 34.23 3.68
2614 2688 4.503741 TTGCTGCACTTGAATAACTTCC 57.496 40.909 0.00 0.00 0.00 3.46
2625 2699 9.480053 CACTTGAATAACTTCCAACATTGAAAT 57.520 29.630 0.00 0.00 0.00 2.17
2671 2745 6.153170 TCAACCCCTTTTTCTAACGAAAACTT 59.847 34.615 0.00 0.00 45.87 2.66
2672 2746 6.534475 ACCCCTTTTTCTAACGAAAACTTT 57.466 33.333 0.00 0.00 45.87 2.66
2799 2873 0.260230 TCTTTTCCCCAGCACCAACA 59.740 50.000 0.00 0.00 0.00 3.33
2800 2874 1.118838 CTTTTCCCCAGCACCAACAA 58.881 50.000 0.00 0.00 0.00 2.83
2883 2958 8.950007 TTTCCCTGAATAATTGTTAGTTCCTT 57.050 30.769 0.00 0.00 0.00 3.36
2884 2959 8.950007 TTCCCTGAATAATTGTTAGTTCCTTT 57.050 30.769 0.00 0.00 0.00 3.11
2890 2965 9.174166 TGAATAATTGTTAGTTCCTTTAGAGCC 57.826 33.333 0.00 0.00 0.00 4.70
2991 3066 7.744087 TTTAGTGCACTGACAATTTAGATGT 57.256 32.000 29.57 0.00 0.00 3.06
3239 3324 6.651643 AGTTTATGTAACGGAACTATTGCACA 59.348 34.615 0.00 0.00 41.78 4.57
3258 3343 2.569853 ACATACGACATTTCCTGGTCCA 59.430 45.455 0.00 0.00 0.00 4.02
3285 3370 2.171448 GGTAGGATGCAAGATCCAGTGT 59.829 50.000 7.56 0.00 40.61 3.55
3286 3371 2.414994 AGGATGCAAGATCCAGTGTG 57.585 50.000 7.56 0.00 40.61 3.82
3287 3372 0.737219 GGATGCAAGATCCAGTGTGC 59.263 55.000 0.00 0.00 38.09 4.57
3291 3376 1.239296 GCAAGATCCAGTGTGCTGCA 61.239 55.000 0.00 0.00 41.26 4.41
3302 3390 1.008538 GTGCTGCACTTTGGTTCCG 60.009 57.895 24.68 0.00 0.00 4.30
3326 3414 2.551287 CCACGGTTGGTTTGATCTGGTA 60.551 50.000 0.00 0.00 38.23 3.25
3342 3430 2.430694 CTGGTATGTCGGACAAGGATCA 59.569 50.000 15.72 9.05 0.00 2.92
3365 3453 7.947282 TCAGACGGAACATGTCATATGTATAA 58.053 34.615 0.00 0.00 0.00 0.98
3371 3459 7.329471 CGGAACATGTCATATGTATAACAGGAG 59.671 40.741 12.25 3.48 0.00 3.69
3393 3481 7.066284 AGGAGTCTTTATGCAAATATGTGTCAC 59.934 37.037 0.00 0.00 0.00 3.67
3499 3805 5.620206 TCTCATTTAGTCCTTTTGCAGTGA 58.380 37.500 0.00 0.00 0.00 3.41
3543 3849 7.320560 GCGTTTTAGTATGAAGTTGTGTTTCTC 59.679 37.037 0.00 0.00 0.00 2.87
3544 3850 7.526186 CGTTTTAGTATGAAGTTGTGTTTCTCG 59.474 37.037 0.00 0.00 0.00 4.04
3627 3933 6.515272 AATTTGCTATTACTGAACCTGGTG 57.485 37.500 0.00 0.00 0.00 4.17
3630 3936 5.748670 TGCTATTACTGAACCTGGTGTTA 57.251 39.130 0.00 0.00 37.29 2.41
3639 3945 6.981722 ACTGAACCTGGTGTTATTGATTTTC 58.018 36.000 0.00 0.00 37.29 2.29
3788 4094 9.528489 TTTTTCTCCAACTGCCTAAGTATTAAT 57.472 29.630 0.00 0.00 38.56 1.40
3796 4102 8.930760 CAACTGCCTAAGTATTAATAGCTGATC 58.069 37.037 13.75 0.00 38.56 2.92
3898 4212 1.742831 TCGGGTTGTTTGCTATCATGC 59.257 47.619 0.00 0.00 0.00 4.06
3937 4251 4.318121 CGAAGCTTAATGTCCTATGAACGC 60.318 45.833 0.00 0.00 0.00 4.84
3948 4262 4.862574 GTCCTATGAACGCGCATATAATGA 59.137 41.667 5.73 0.00 30.90 2.57
3982 4296 9.321590 GTGTACTTTTGTCGGATAAACAATTAC 57.678 33.333 0.00 1.19 36.57 1.89
3984 4298 9.881529 GTACTTTTGTCGGATAAACAATTACAA 57.118 29.630 0.00 0.00 36.57 2.41
3985 4299 8.791355 ACTTTTGTCGGATAAACAATTACAAC 57.209 30.769 0.00 0.00 36.57 3.32
3986 4300 7.588488 ACTTTTGTCGGATAAACAATTACAACG 59.412 33.333 0.00 0.00 36.57 4.10
3987 4301 4.960329 TGTCGGATAAACAATTACAACGC 58.040 39.130 0.00 0.00 0.00 4.84
3988 4302 4.691685 TGTCGGATAAACAATTACAACGCT 59.308 37.500 0.00 0.00 0.00 5.07
3989 4303 5.163933 TGTCGGATAAACAATTACAACGCTC 60.164 40.000 0.00 0.00 0.00 5.03
3992 4306 6.812656 TCGGATAAACAATTACAACGCTCTTA 59.187 34.615 0.00 0.00 0.00 2.10
3994 4308 8.757789 CGGATAAACAATTACAACGCTCTTATA 58.242 33.333 0.00 0.00 0.00 0.98
4001 4315 8.999431 ACAATTACAACGCTCTTATATTATGGG 58.001 33.333 0.00 0.00 0.00 4.00
4002 4316 9.214957 CAATTACAACGCTCTTATATTATGGGA 57.785 33.333 0.00 0.00 0.00 4.37
4003 4317 8.773404 ATTACAACGCTCTTATATTATGGGAC 57.227 34.615 0.00 0.00 0.00 4.46
4005 4319 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4006 4320 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4008 4322 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4009 4323 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4048 4370 5.905331 TCCACTTAGGTATGAGATTGTGGAT 59.095 40.000 7.34 0.00 44.99 3.41
4261 4595 3.051341 TCCTCTTGGGGGCTTATCTTAGA 60.051 47.826 0.00 0.00 35.33 2.10
4262 4596 3.071747 CCTCTTGGGGGCTTATCTTAGAC 59.928 52.174 0.00 0.00 0.00 2.59
4289 4623 2.159707 CGTCCAGTTTCGGTTATGCAAG 60.160 50.000 0.00 0.00 0.00 4.01
4292 4626 4.156008 GTCCAGTTTCGGTTATGCAAGAAT 59.844 41.667 0.00 0.00 0.00 2.40
4360 4694 0.850100 TTGGTGGACATGGAACTGGT 59.150 50.000 0.00 0.00 0.00 4.00
4434 4768 7.072454 AGACAGGGGTAAGCTCAAATGATATTA 59.928 37.037 0.00 0.00 0.00 0.98
4435 4769 7.759607 ACAGGGGTAAGCTCAAATGATATTAT 58.240 34.615 0.00 0.00 0.00 1.28
4489 4825 6.598850 TGAGCATGAGTTTGCATCTTGTTATA 59.401 34.615 0.00 0.00 45.23 0.98
4553 4889 9.840427 ATAGATGGTTTTCTGAAACAAAATACG 57.160 29.630 1.58 0.00 45.52 3.06
4575 4911 5.295045 ACGGCGTCCTGGTAATTAAATTTAG 59.705 40.000 6.77 0.00 0.00 1.85
4674 5016 3.812053 CAGACAGCTAGGATAAATGCCAC 59.188 47.826 0.00 0.00 0.00 5.01
4730 5075 2.128290 CTGTCCTGGGTGGCACATGA 62.128 60.000 20.82 6.74 44.52 3.07
4891 5348 9.774742 CTATTTTTGCTGACTAATACTTTGGTC 57.225 33.333 0.00 0.00 42.08 4.02
4998 5455 3.250744 GCCTCGGTTTCTTTTATTTGGC 58.749 45.455 0.00 0.00 0.00 4.52
5019 5476 3.128589 GCGGCTTTGATGGAAAGAATACA 59.871 43.478 0.00 0.00 43.50 2.29
5059 5516 6.826741 GTGGCTTGTTCCTGAAGGTATATTAA 59.173 38.462 0.00 0.00 36.34 1.40
5117 5583 9.574458 TGATATCTTCGAGAGTTGAAGTTTTAG 57.426 33.333 3.98 0.00 42.68 1.85
5129 5595 9.783256 GAGTTGAAGTTTTAGTTTGTATTGTGT 57.217 29.630 0.00 0.00 0.00 3.72
5141 5607 7.543756 AGTTTGTATTGTGTAAACAGCAAACT 58.456 30.769 24.34 24.34 45.29 2.66
5262 5735 7.510685 ACTCCATCAGTATCATATAGGTGTTGT 59.489 37.037 0.00 0.00 31.37 3.32
5399 5872 2.030805 CCCCTACTAACGGCGTACATAC 60.031 54.545 15.20 0.00 0.00 2.39
5453 5926 3.814504 ATAGGGGCATTTGGTGGATAG 57.185 47.619 0.00 0.00 0.00 2.08
5515 6113 8.671987 AAGATAATGCCCTGACTATATGTACT 57.328 34.615 0.00 0.00 0.00 2.73
5516 6114 9.769677 AAGATAATGCCCTGACTATATGTACTA 57.230 33.333 0.00 0.00 0.00 1.82
5517 6115 9.191479 AGATAATGCCCTGACTATATGTACTAC 57.809 37.037 0.00 0.00 0.00 2.73
5518 6116 9.191479 GATAATGCCCTGACTATATGTACTACT 57.809 37.037 0.00 0.00 0.00 2.57
5519 6117 7.469537 AATGCCCTGACTATATGTACTACTC 57.530 40.000 0.00 0.00 0.00 2.59
5520 6118 5.322754 TGCCCTGACTATATGTACTACTCC 58.677 45.833 0.00 0.00 0.00 3.85
5521 6119 4.395542 GCCCTGACTATATGTACTACTCCG 59.604 50.000 0.00 0.00 0.00 4.63
5522 6120 5.558818 CCCTGACTATATGTACTACTCCGT 58.441 45.833 0.00 0.00 0.00 4.69
5523 6121 6.002704 CCCTGACTATATGTACTACTCCGTT 58.997 44.000 0.00 0.00 0.00 4.44
5524 6122 6.149142 CCCTGACTATATGTACTACTCCGTTC 59.851 46.154 0.00 0.00 0.00 3.95
5525 6123 6.149142 CCTGACTATATGTACTACTCCGTTCC 59.851 46.154 0.00 0.00 0.00 3.62
5526 6124 6.835174 TGACTATATGTACTACTCCGTTCCT 58.165 40.000 0.00 0.00 0.00 3.36
5527 6125 7.966812 TGACTATATGTACTACTCCGTTCCTA 58.033 38.462 0.00 0.00 0.00 2.94
5528 6126 8.432013 TGACTATATGTACTACTCCGTTCCTAA 58.568 37.037 0.00 0.00 0.00 2.69
5529 6127 9.277783 GACTATATGTACTACTCCGTTCCTAAA 57.722 37.037 0.00 0.00 0.00 1.85
5530 6128 9.804977 ACTATATGTACTACTCCGTTCCTAAAT 57.195 33.333 0.00 0.00 0.00 1.40
5535 6133 9.760077 ATGTACTACTCCGTTCCTAAATATTTG 57.240 33.333 11.05 1.40 0.00 2.32
5536 6134 8.752187 TGTACTACTCCGTTCCTAAATATTTGT 58.248 33.333 11.05 0.00 0.00 2.83
5537 6135 9.242477 GTACTACTCCGTTCCTAAATATTTGTC 57.758 37.037 11.05 0.00 0.00 3.18
5538 6136 8.075761 ACTACTCCGTTCCTAAATATTTGTCT 57.924 34.615 11.05 0.00 0.00 3.41
5539 6137 8.537858 ACTACTCCGTTCCTAAATATTTGTCTT 58.462 33.333 11.05 0.00 0.00 3.01
5540 6138 9.379791 CTACTCCGTTCCTAAATATTTGTCTTT 57.620 33.333 11.05 0.00 0.00 2.52
5541 6139 8.265165 ACTCCGTTCCTAAATATTTGTCTTTC 57.735 34.615 11.05 0.00 0.00 2.62
5542 6140 8.101419 ACTCCGTTCCTAAATATTTGTCTTTCT 58.899 33.333 11.05 0.00 0.00 2.52
5543 6141 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5544 6142 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5545 6143 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5558 6156 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5559 6157 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5560 6158 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5561 6159 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5562 6160 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5563 6161 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5564 6162 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5565 6163 8.410673 TCTAGAGATTTCAACAAGTGACTACT 57.589 34.615 0.00 0.00 39.32 2.57
5566 6164 9.516546 TCTAGAGATTTCAACAAGTGACTACTA 57.483 33.333 0.00 0.00 35.69 1.82
5567 6165 9.562583 CTAGAGATTTCAACAAGTGACTACTAC 57.437 37.037 0.00 0.00 35.69 2.73
5568 6166 7.085116 AGAGATTTCAACAAGTGACTACTACG 58.915 38.462 0.00 0.00 35.69 3.51
5569 6167 6.157211 AGATTTCAACAAGTGACTACTACGG 58.843 40.000 0.00 0.00 35.69 4.02
5570 6168 5.518848 TTTCAACAAGTGACTACTACGGA 57.481 39.130 0.00 0.00 35.69 4.69
5571 6169 4.761235 TCAACAAGTGACTACTACGGAG 57.239 45.455 0.00 0.00 35.69 4.63
5572 6170 3.057736 TCAACAAGTGACTACTACGGAGC 60.058 47.826 0.00 0.00 35.69 4.70
5573 6171 2.511659 ACAAGTGACTACTACGGAGCA 58.488 47.619 0.00 0.00 35.69 4.26
5574 6172 2.889045 ACAAGTGACTACTACGGAGCAA 59.111 45.455 0.00 0.00 35.69 3.91
5575 6173 3.319972 ACAAGTGACTACTACGGAGCAAA 59.680 43.478 0.00 0.00 35.69 3.68
5576 6174 4.202182 ACAAGTGACTACTACGGAGCAAAA 60.202 41.667 0.00 0.00 35.69 2.44
5577 6175 4.803098 AGTGACTACTACGGAGCAAAAT 57.197 40.909 0.00 0.00 34.74 1.82
5578 6176 4.495422 AGTGACTACTACGGAGCAAAATG 58.505 43.478 0.00 0.00 34.74 2.32
5579 6177 4.219944 AGTGACTACTACGGAGCAAAATGA 59.780 41.667 0.00 0.00 34.74 2.57
5580 6178 4.563184 GTGACTACTACGGAGCAAAATGAG 59.437 45.833 0.00 0.00 0.00 2.90
5581 6179 4.219944 TGACTACTACGGAGCAAAATGAGT 59.780 41.667 0.00 0.00 0.00 3.41
5582 6180 4.495422 ACTACTACGGAGCAAAATGAGTG 58.505 43.478 0.00 0.00 0.00 3.51
5583 6181 3.678056 ACTACGGAGCAAAATGAGTGA 57.322 42.857 0.00 0.00 0.00 3.41
5584 6182 4.002906 ACTACGGAGCAAAATGAGTGAA 57.997 40.909 0.00 0.00 0.00 3.18
5585 6183 4.579869 ACTACGGAGCAAAATGAGTGAAT 58.420 39.130 0.00 0.00 0.00 2.57
5586 6184 5.003804 ACTACGGAGCAAAATGAGTGAATT 58.996 37.500 0.00 0.00 0.00 2.17
5587 6185 4.853924 ACGGAGCAAAATGAGTGAATTT 57.146 36.364 0.00 0.00 0.00 1.82
5588 6186 5.957842 ACGGAGCAAAATGAGTGAATTTA 57.042 34.783 0.00 0.00 0.00 1.40
5589 6187 5.699839 ACGGAGCAAAATGAGTGAATTTAC 58.300 37.500 0.00 0.00 0.00 2.01
5590 6188 5.240623 ACGGAGCAAAATGAGTGAATTTACA 59.759 36.000 2.93 0.00 0.00 2.41
5591 6189 5.569059 CGGAGCAAAATGAGTGAATTTACAC 59.431 40.000 2.93 0.00 40.60 2.90
5624 6222 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
5626 6224 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
5627 6225 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
5628 6226 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
5629 6227 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
5630 6228 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
5631 6229 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
5632 6230 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
5633 6231 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
5634 6232 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
5635 6233 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
5636 6234 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
5637 6235 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
5638 6236 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
5639 6237 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
5640 6238 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
5641 6239 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
5642 6240 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5643 6241 5.939883 TGTGGTAGTCCATTTGAAATCTCTG 59.060 40.000 0.00 0.00 46.20 3.35
5644 6242 6.173339 GTGGTAGTCCATTTGAAATCTCTGA 58.827 40.000 0.00 0.00 46.20 3.27
5645 6243 6.655003 GTGGTAGTCCATTTGAAATCTCTGAA 59.345 38.462 0.00 0.00 46.20 3.02
5646 6244 7.174946 GTGGTAGTCCATTTGAAATCTCTGAAA 59.825 37.037 0.00 0.00 46.20 2.69
5647 6245 7.723616 TGGTAGTCCATTTGAAATCTCTGAAAA 59.276 33.333 0.00 0.00 39.03 2.29
5648 6246 8.239998 GGTAGTCCATTTGAAATCTCTGAAAAG 58.760 37.037 0.00 0.00 0.00 2.27
5649 6247 9.003658 GTAGTCCATTTGAAATCTCTGAAAAGA 57.996 33.333 0.00 0.00 0.00 2.52
5650 6248 7.880105 AGTCCATTTGAAATCTCTGAAAAGAC 58.120 34.615 0.00 0.00 0.00 3.01
5651 6249 7.503566 AGTCCATTTGAAATCTCTGAAAAGACA 59.496 33.333 0.00 0.00 0.00 3.41
5652 6250 8.137437 GTCCATTTGAAATCTCTGAAAAGACAA 58.863 33.333 0.00 0.00 0.00 3.18
5653 6251 8.694540 TCCATTTGAAATCTCTGAAAAGACAAA 58.305 29.630 0.00 0.00 0.00 2.83
5654 6252 9.485206 CCATTTGAAATCTCTGAAAAGACAAAT 57.515 29.630 0.00 0.00 33.34 2.32
5665 6263 9.760660 CTCTGAAAAGACAAATATTTAGGAACG 57.239 33.333 0.00 0.00 0.00 3.95
5666 6264 8.726988 TCTGAAAAGACAAATATTTAGGAACGG 58.273 33.333 0.00 0.00 0.00 4.44
5667 6265 8.624367 TGAAAAGACAAATATTTAGGAACGGA 57.376 30.769 0.00 0.00 0.00 4.69
5668 6266 8.726988 TGAAAAGACAAATATTTAGGAACGGAG 58.273 33.333 0.00 0.00 0.00 4.63
5669 6267 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
5670 6268 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5671 6269 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5672 6270 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5680 6278 2.311243 AGGAACGGAGGGAGTAGTTACT 59.689 50.000 0.00 0.00 39.71 2.24
5855 6456 5.814705 CACAGGCAAACCAAATTGTTTTAGA 59.185 36.000 0.00 0.00 36.33 2.10
5890 6491 3.882326 CCCCCGGCATCTGCATCT 61.882 66.667 0.00 0.00 44.36 2.90
5980 6581 6.899114 ACATGAAACGAACTTGGAATAAGAC 58.101 36.000 0.00 0.00 0.00 3.01
5985 6586 4.813027 ACGAACTTGGAATAAGACGCTTA 58.187 39.130 0.00 2.53 0.00 3.09
6008 6609 2.385417 AGGGTTTTGTGGGGATATGGTT 59.615 45.455 0.00 0.00 0.00 3.67
6009 6610 2.499693 GGGTTTTGTGGGGATATGGTTG 59.500 50.000 0.00 0.00 0.00 3.77
6010 6611 2.499693 GGTTTTGTGGGGATATGGTTGG 59.500 50.000 0.00 0.00 0.00 3.77
6011 6612 3.169908 GTTTTGTGGGGATATGGTTGGT 58.830 45.455 0.00 0.00 0.00 3.67
6012 6613 3.551635 TTTGTGGGGATATGGTTGGTT 57.448 42.857 0.00 0.00 0.00 3.67
6061 6662 3.317150 TGAGTTCTTACATGTGTCAGCG 58.683 45.455 9.11 0.00 0.00 5.18
6122 6723 4.910195 AGTGTTGAGTCATATTCTGCCAA 58.090 39.130 0.00 0.00 0.00 4.52
6132 6733 5.003160 TCATATTCTGCCAATCAATACCCG 58.997 41.667 0.00 0.00 0.00 5.28
6171 6772 5.719563 TCCACACATTCTCCAGTAATGACTA 59.280 40.000 3.01 0.00 37.68 2.59
6195 6796 7.352079 AGTGAATGGTGAGAAGAATTTTGTT 57.648 32.000 0.00 0.00 0.00 2.83
6234 6835 5.105595 CCAAGGAAAAGGAATTCATCTGACC 60.106 44.000 7.93 3.04 0.00 4.02
6246 6847 4.808414 TCATCTGACCCAGTTCAGTTAG 57.192 45.455 0.30 0.00 43.19 2.34
6392 7020 6.625362 TGCTGTAAACTCTTCTGATCTACAG 58.375 40.000 8.04 8.04 46.97 2.74
6393 7021 6.209589 TGCTGTAAACTCTTCTGATCTACAGT 59.790 38.462 12.06 0.00 45.86 3.55
6394 7022 7.093992 GCTGTAAACTCTTCTGATCTACAGTT 58.906 38.462 12.06 3.71 45.86 3.16
6395 7023 7.274686 GCTGTAAACTCTTCTGATCTACAGTTC 59.725 40.741 12.06 0.00 45.86 3.01
6396 7024 8.410673 TGTAAACTCTTCTGATCTACAGTTCT 57.589 34.615 0.00 0.00 45.86 3.01
6397 7025 9.516546 TGTAAACTCTTCTGATCTACAGTTCTA 57.483 33.333 0.00 0.00 45.86 2.10
6398 7026 9.777575 GTAAACTCTTCTGATCTACAGTTCTAC 57.222 37.037 0.00 0.00 45.86 2.59
6399 7027 8.410673 AAACTCTTCTGATCTACAGTTCTACA 57.589 34.615 0.00 0.00 45.86 2.74
6565 7196 5.182001 ACAGTCTGCATTGAAGGTATGTTTC 59.818 40.000 0.00 0.00 0.00 2.78
6621 7252 5.296813 AGTAAAATGAGAACCAATGTCGC 57.703 39.130 0.00 0.00 0.00 5.19
6699 7332 4.036498 GCAGGAATCAGAATCACAATCTGG 59.964 45.833 3.92 0.00 43.58 3.86
6700 7333 4.579340 CAGGAATCAGAATCACAATCTGGG 59.421 45.833 3.92 0.00 43.58 4.45
6891 7524 6.348498 TGATATCTTTCCTTTTCTGCGATCA 58.652 36.000 3.98 0.00 0.00 2.92
6923 7556 1.970640 GTTGGCTTCCAAGGAAATGGT 59.029 47.619 2.78 0.00 44.82 3.55
7133 7770 9.748708 TCAGTTTTCCATAAAATCAAGAAACAG 57.251 29.630 0.00 0.00 36.96 3.16
7158 7795 2.223377 GGTGGAACAATGACACGACTTC 59.777 50.000 0.00 0.00 44.16 3.01
7164 7801 1.792367 CAATGACACGACTTCGCAGAA 59.208 47.619 0.00 0.00 45.90 3.02
7169 7806 2.277084 ACACGACTTCGCAGAAAGTTT 58.723 42.857 0.00 0.00 45.90 2.66
7176 7813 3.748568 ACTTCGCAGAAAGTTTCATCTCC 59.251 43.478 17.65 0.67 45.90 3.71
7263 7900 5.240891 TCCATTTTGTTGTCTTTTGCACAA 58.759 33.333 0.00 0.00 0.00 3.33
7267 7904 5.588568 TTTGTTGTCTTTTGCACAAACAG 57.411 34.783 0.00 0.00 35.53 3.16
7302 7939 3.603532 TGCAAAACAAAATGTTGCCAGA 58.396 36.364 5.26 0.00 45.60 3.86
7331 7968 8.950208 TCACGTGGATTATGTGTTTTATCATA 57.050 30.769 17.00 0.00 44.84 2.15
7396 8033 8.515473 AAAAGGAAAAACGGAAAATAATCGAG 57.485 30.769 0.00 0.00 0.00 4.04
7400 8037 7.820872 AGGAAAAACGGAAAATAATCGAGAGTA 59.179 33.333 0.00 0.00 0.00 2.59
7410 8047 9.646427 GAAAATAATCGAGAGTAGAATATGCCT 57.354 33.333 0.00 0.00 0.00 4.75
7448 8085 2.887151 AGTGGACTTGCTGGCTAAAT 57.113 45.000 0.00 0.00 0.00 1.40
7449 8086 4.469945 ACTAGTGGACTTGCTGGCTAAATA 59.530 41.667 0.00 0.00 0.00 1.40
7450 8087 4.301072 AGTGGACTTGCTGGCTAAATAA 57.699 40.909 0.00 0.00 0.00 1.40
7451 8088 4.662278 AGTGGACTTGCTGGCTAAATAAA 58.338 39.130 0.00 0.00 0.00 1.40
7452 8089 5.264395 AGTGGACTTGCTGGCTAAATAAAT 58.736 37.500 0.00 0.00 0.00 1.40
7464 8101 7.172703 GCTGGCTAAATAAATATTGAGTACGGT 59.827 37.037 0.00 0.00 0.00 4.83
7495 8139 1.389609 CCCAGCCATGGTCAGAATGC 61.390 60.000 14.67 0.00 46.10 3.56
7516 8160 3.589988 CCTGAAGAAACGATAGCACAGT 58.410 45.455 0.00 0.00 42.67 3.55
7521 8165 5.633601 TGAAGAAACGATAGCACAGTAACTG 59.366 40.000 0.00 0.00 42.67 3.16
7548 8192 3.411446 TGTTAAAGTCCTGCCATGAGTG 58.589 45.455 0.00 0.00 0.00 3.51
7564 8208 4.926860 TGAGTGTTTCGCATTGACTATG 57.073 40.909 0.00 0.00 37.31 2.23
7798 8442 2.502295 GATGACATCCCCATCTTGCTC 58.498 52.381 3.89 0.00 37.88 4.26
7865 8531 2.309136 ATTTTGCCTGGTAGGTGCTT 57.691 45.000 0.00 0.00 37.80 3.91
7867 8533 0.771127 TTTGCCTGGTAGGTGCTTCT 59.229 50.000 0.00 0.00 37.80 2.85
7901 8567 1.202758 TGCTTCTGTGGTTTCCGATGT 60.203 47.619 0.00 0.00 0.00 3.06
7956 8623 0.901580 CCCCAGGCAAGCAAACAGAT 60.902 55.000 0.00 0.00 0.00 2.90
7976 8643 7.033791 ACAGATCATTGATGAGCAAAATTGAC 58.966 34.615 11.34 0.00 45.12 3.18
8011 8679 8.872845 GTTGTATTTGGGAAATGCATAGAAAAG 58.127 33.333 0.00 0.00 41.88 2.27
8019 8687 6.372381 GGGAAATGCATAGAAAAGCAAAATGT 59.628 34.615 0.00 0.00 44.88 2.71
8067 8735 8.484641 TTGATGTACAAGCTAGAATCTTCTTG 57.515 34.615 17.42 17.42 41.07 3.02
8154 8822 4.036734 GGAGCAAATTAATTCTCATCCGCA 59.963 41.667 15.18 0.00 0.00 5.69
8304 9071 7.123547 TGACTTGTAGGTTCAAAAACTTGGATT 59.876 33.333 0.00 0.00 35.61 3.01
8312 9079 7.119116 AGGTTCAAAAACTTGGATTGTGTTTTC 59.881 33.333 0.00 0.00 41.26 2.29
8357 9124 6.959639 AATTGACCTCTGTTTAAAGCTCAA 57.040 33.333 0.00 0.00 0.00 3.02
8409 9192 8.475639 TGTCTGAAACTTAGGTCATATTAGGTC 58.524 37.037 0.00 0.00 0.00 3.85
8430 9240 5.457140 GTCGATGACTAAATTTGCCACAAA 58.543 37.500 0.00 0.00 0.00 2.83
8471 9282 3.365265 CCACCCAAAGCACGGAGC 61.365 66.667 0.00 0.00 46.19 4.70
8491 9311 1.917303 CACAAAACAACCGACAAGTGC 59.083 47.619 0.00 0.00 0.00 4.40
8552 9372 4.005650 TGACAGATTCAGGATTTGAGCAC 58.994 43.478 0.00 0.00 37.07 4.40
8579 9419 6.789262 ACAAGAGCATTTGGATTTATTCTCG 58.211 36.000 5.38 0.00 32.32 4.04
8581 9421 4.883585 AGAGCATTTGGATTTATTCTCGCA 59.116 37.500 0.00 0.00 0.00 5.10
8608 9448 5.160641 ACATATGCATCCGTTTTTGAACAC 58.839 37.500 0.19 0.00 0.00 3.32
8706 9829 4.170468 AGGAGGGCCTATAAATGTTGTG 57.830 45.455 5.73 0.00 44.74 3.33
8777 9904 9.520204 AATACAAAAGAAATTATTCTCATGCCG 57.480 29.630 0.00 0.00 45.19 5.69
8790 9918 4.068599 TCTCATGCCGTTTTGTAATGTCA 58.931 39.130 0.00 0.00 0.00 3.58
8834 9962 4.874970 ACTTGGTCAAACTTTGCATCATC 58.125 39.130 0.00 0.00 0.00 2.92
8890 10018 5.733620 AGTTGGTGGAGTACGAAATTAGA 57.266 39.130 0.00 0.00 0.00 2.10
8895 10023 8.938906 GTTGGTGGAGTACGAAATTAGAAAATA 58.061 33.333 0.00 0.00 0.00 1.40
8926 10059 4.792068 TGACTCCCAACACTTTTGAGAAT 58.208 39.130 0.00 0.00 0.00 2.40
8928 10061 6.361433 TGACTCCCAACACTTTTGAGAATAA 58.639 36.000 0.00 0.00 0.00 1.40
8929 10062 6.831353 TGACTCCCAACACTTTTGAGAATAAA 59.169 34.615 0.00 0.00 0.00 1.40
8932 10065 8.197439 ACTCCCAACACTTTTGAGAATAAAAAG 58.803 33.333 7.01 7.01 38.93 2.27
8936 10069 8.330302 CCAACACTTTTGAGAATAAAAAGCAAG 58.670 33.333 8.21 2.95 37.10 4.01
8938 10071 7.041107 ACACTTTTGAGAATAAAAAGCAAGCA 58.959 30.769 8.21 0.00 37.10 3.91
8939 10072 7.548780 ACACTTTTGAGAATAAAAAGCAAGCAA 59.451 29.630 8.21 0.00 37.10 3.91
8943 10076 5.772521 TGAGAATAAAAAGCAAGCAACCTC 58.227 37.500 0.00 0.00 0.00 3.85
8944 10077 5.139435 AGAATAAAAAGCAAGCAACCTCC 57.861 39.130 0.00 0.00 0.00 4.30
8946 10079 1.111277 AAAAAGCAAGCAACCTCCGT 58.889 45.000 0.00 0.00 0.00 4.69
8954 10087 1.376812 GCAACCTCCGTCCCGAATT 60.377 57.895 0.00 0.00 0.00 2.17
8955 10088 0.108041 GCAACCTCCGTCCCGAATTA 60.108 55.000 0.00 0.00 0.00 1.40
8960 10093 1.472728 CCTCCGTCCCGAATTAGTTGG 60.473 57.143 0.00 0.00 0.00 3.77
8964 10097 2.160813 CCGTCCCGAATTAGTTGGTTTG 59.839 50.000 0.00 0.00 0.00 2.93
8966 10099 3.414269 GTCCCGAATTAGTTGGTTTGGA 58.586 45.455 0.00 0.00 31.64 3.53
8967 10100 3.439129 GTCCCGAATTAGTTGGTTTGGAG 59.561 47.826 0.00 0.00 31.64 3.86
8968 10101 3.073356 TCCCGAATTAGTTGGTTTGGAGT 59.927 43.478 0.00 0.00 31.64 3.85
8980 10113 6.042781 AGTTGGTTTGGAGTTGTCTAGATACA 59.957 38.462 0.00 0.00 0.00 2.29
8987 10120 4.261656 GGAGTTGTCTAGATACATCCGGTG 60.262 50.000 0.00 1.37 0.00 4.94
8999 10132 6.493802 AGATACATCCGGTGATACATACAACT 59.506 38.462 0.00 0.00 0.00 3.16
9001 10134 5.839621 ACATCCGGTGATACATACAACTAC 58.160 41.667 0.00 0.00 0.00 2.73
9006 10139 5.806502 CCGGTGATACATACAACTACGAAAA 59.193 40.000 0.00 0.00 0.00 2.29
9013 10146 0.939419 ACAACTACGAAAACGTGCCC 59.061 50.000 5.54 0.00 0.00 5.36
9017 10150 1.908066 CTACGAAAACGTGCCCAGCC 61.908 60.000 5.54 0.00 0.00 4.85
9019 10152 2.909965 GAAAACGTGCCCAGCCCA 60.910 61.111 0.00 0.00 0.00 5.36
9020 10153 2.203625 AAAACGTGCCCAGCCCAT 60.204 55.556 0.00 0.00 0.00 4.00
9021 10154 0.963355 GAAAACGTGCCCAGCCCATA 60.963 55.000 0.00 0.00 0.00 2.74
9022 10155 0.965363 AAAACGTGCCCAGCCCATAG 60.965 55.000 0.00 0.00 0.00 2.23
9051 10184 3.000122 CGACGAACCAAACAAACGTCTAA 60.000 43.478 0.00 0.00 46.85 2.10
9052 10185 4.492247 CGACGAACCAAACAAACGTCTAAA 60.492 41.667 0.00 0.00 46.85 1.85
9093 10226 2.481441 AGGATAGATGTGGCAACCTCA 58.519 47.619 0.00 0.00 0.00 3.86
9095 10228 2.486191 GGATAGATGTGGCAACCTCAGG 60.486 54.545 0.00 0.00 30.35 3.86
9113 10246 1.555533 AGGGTTTCCTCCTCGATTCAC 59.444 52.381 0.00 0.00 39.80 3.18
9121 10254 3.133003 TCCTCCTCGATTCACAGGATTTC 59.867 47.826 2.52 0.00 38.18 2.17
9122 10255 3.133721 CCTCCTCGATTCACAGGATTTCT 59.866 47.826 2.52 0.00 38.18 2.52
9123 10256 4.342378 CCTCCTCGATTCACAGGATTTCTA 59.658 45.833 2.52 0.00 38.18 2.10
9124 10257 5.163405 CCTCCTCGATTCACAGGATTTCTAA 60.163 44.000 2.52 0.00 38.18 2.10
9125 10258 5.907207 TCCTCGATTCACAGGATTTCTAAG 58.093 41.667 0.00 0.00 33.57 2.18
9126 10259 5.656859 TCCTCGATTCACAGGATTTCTAAGA 59.343 40.000 0.00 0.00 33.57 2.10
9127 10260 5.751028 CCTCGATTCACAGGATTTCTAAGAC 59.249 44.000 0.00 0.00 30.32 3.01
9128 10261 5.340803 TCGATTCACAGGATTTCTAAGACG 58.659 41.667 0.00 0.00 0.00 4.18
9129 10262 4.026475 CGATTCACAGGATTTCTAAGACGC 60.026 45.833 0.00 0.00 0.00 5.19
9130 10263 2.876091 TCACAGGATTTCTAAGACGCG 58.124 47.619 3.53 3.53 0.00 6.01
9131 10264 1.927174 CACAGGATTTCTAAGACGCGG 59.073 52.381 12.47 0.00 0.00 6.46
9132 10265 1.134788 ACAGGATTTCTAAGACGCGGG 60.135 52.381 12.47 0.00 0.00 6.13
9133 10266 0.464452 AGGATTTCTAAGACGCGGGG 59.536 55.000 12.47 0.00 0.00 5.73
9134 10267 0.462789 GGATTTCTAAGACGCGGGGA 59.537 55.000 12.47 0.00 0.00 4.81
9135 10268 1.568606 GATTTCTAAGACGCGGGGAC 58.431 55.000 12.47 0.00 0.00 4.46
9136 10269 1.136500 GATTTCTAAGACGCGGGGACT 59.864 52.381 12.47 0.82 0.00 3.85
9137 10270 0.245539 TTTCTAAGACGCGGGGACTG 59.754 55.000 12.47 0.00 38.10 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.697431 GCTATAGAGCTGAGTCACGG 57.303 55.000 3.21 0.00 45.98 4.94
87 88 2.929960 TGAAGCTCTCTTTGACGTACG 58.070 47.619 15.01 15.01 31.48 3.67
95 96 6.713903 TGTTCATCTCATTTGAAGCTCTCTTT 59.286 34.615 0.00 0.00 33.95 2.52
102 103 3.423571 CGCTGTTCATCTCATTTGAAGC 58.576 45.455 0.00 0.00 33.95 3.86
120 121 6.885922 AGTAATACAGTAATTTTCTCCCGCT 58.114 36.000 0.00 0.00 0.00 5.52
121 122 7.279313 TGAAGTAATACAGTAATTTTCTCCCGC 59.721 37.037 0.00 0.00 0.00 6.13
122 123 8.712285 TGAAGTAATACAGTAATTTTCTCCCG 57.288 34.615 0.00 0.00 0.00 5.14
139 140 8.827177 TGTCTGAATTAGTCGTTTGAAGTAAT 57.173 30.769 0.00 0.00 0.00 1.89
163 165 9.037737 CAATTTGAACCCTAAAATGCTATCATG 57.962 33.333 0.00 0.00 32.23 3.07
167 169 8.592809 TGAACAATTTGAACCCTAAAATGCTAT 58.407 29.630 2.79 0.00 0.00 2.97
174 176 5.450688 CGGTGTGAACAATTTGAACCCTAAA 60.451 40.000 2.79 0.00 0.00 1.85
175 177 4.036971 CGGTGTGAACAATTTGAACCCTAA 59.963 41.667 2.79 0.00 0.00 2.69
186 188 2.435372 ATATGCCCGGTGTGAACAAT 57.565 45.000 0.00 0.00 0.00 2.71
190 192 3.440872 GTGTTTAATATGCCCGGTGTGAA 59.559 43.478 0.00 0.00 0.00 3.18
198 200 2.645802 TCCACCGTGTTTAATATGCCC 58.354 47.619 0.00 0.00 0.00 5.36
214 216 6.127897 ACCAAGAAAAATCTCGAATCATCCAC 60.128 38.462 0.00 0.00 0.00 4.02
220 222 7.133891 TCTCAACCAAGAAAAATCTCGAATC 57.866 36.000 0.00 0.00 0.00 2.52
228 230 5.067805 GTCACACCTCTCAACCAAGAAAAAT 59.932 40.000 0.00 0.00 0.00 1.82
229 231 4.398044 GTCACACCTCTCAACCAAGAAAAA 59.602 41.667 0.00 0.00 0.00 1.94
236 238 1.338107 ATCGTCACACCTCTCAACCA 58.662 50.000 0.00 0.00 0.00 3.67
238 240 3.390135 TCAAATCGTCACACCTCTCAAC 58.610 45.455 0.00 0.00 0.00 3.18
240 242 2.628178 ACTCAAATCGTCACACCTCTCA 59.372 45.455 0.00 0.00 0.00 3.27
241 243 3.305398 ACTCAAATCGTCACACCTCTC 57.695 47.619 0.00 0.00 0.00 3.20
242 244 3.181465 ACAACTCAAATCGTCACACCTCT 60.181 43.478 0.00 0.00 0.00 3.69
243 245 3.059597 CACAACTCAAATCGTCACACCTC 60.060 47.826 0.00 0.00 0.00 3.85
244 246 2.872245 CACAACTCAAATCGTCACACCT 59.128 45.455 0.00 0.00 0.00 4.00
245 247 2.602217 GCACAACTCAAATCGTCACACC 60.602 50.000 0.00 0.00 0.00 4.16
287 289 3.300711 CCGAAAAGGAAGGACGTGT 57.699 52.632 0.00 0.00 45.00 4.49
297 299 2.487762 TGCTGCTAACATTCCGAAAAGG 59.512 45.455 0.00 0.00 42.97 3.11
305 307 5.239359 TGACAATGATGCTGCTAACATTC 57.761 39.130 0.00 1.21 31.85 2.67
319 321 4.570369 ACGCGACATGAAATATGACAATGA 59.430 37.500 15.93 0.00 0.00 2.57
332 334 4.514545 GATGTAATCAAACGCGACATGA 57.485 40.909 15.93 14.43 44.70 3.07
360 362 3.586892 GGTTTCCTCAAGTCTAACCTCG 58.413 50.000 0.00 0.00 36.25 4.63
370 372 1.873591 CACGACAAGGGTTTCCTCAAG 59.126 52.381 0.00 0.00 44.07 3.02
371 373 1.487142 TCACGACAAGGGTTTCCTCAA 59.513 47.619 0.00 0.00 44.07 3.02
403 405 6.803320 CACAATTTTCGTTCCGTAGACTACTA 59.197 38.462 10.82 0.00 0.00 1.82
408 410 4.682860 TCTCACAATTTTCGTTCCGTAGAC 59.317 41.667 0.00 0.00 0.00 2.59
414 416 7.138736 TGAAGAAATCTCACAATTTTCGTTCC 58.861 34.615 0.00 0.00 35.14 3.62
416 418 9.831737 CTATGAAGAAATCTCACAATTTTCGTT 57.168 29.630 0.00 0.00 35.14 3.85
426 428 9.015577 CGTTCTAGTTCTATGAAGAAATCTCAC 57.984 37.037 0.00 0.00 43.30 3.51
427 429 8.957466 TCGTTCTAGTTCTATGAAGAAATCTCA 58.043 33.333 0.00 0.00 43.30 3.27
454 456 8.613482 CATGCAATAGATTATGTCCATCTGATC 58.387 37.037 0.00 0.00 32.94 2.92
457 459 7.916914 TCATGCAATAGATTATGTCCATCTG 57.083 36.000 0.00 0.00 32.94 2.90
473 475 9.846248 GTGTTAGAAAATTCTACTTCATGCAAT 57.154 29.630 2.42 0.00 39.36 3.56
517 523 6.725834 TGGAAGGCCTCTTTATTTCAAAGAAT 59.274 34.615 5.23 0.00 36.01 2.40
544 550 2.952310 GCGGAGATTAAGGAGGCAAATT 59.048 45.455 0.00 0.00 0.00 1.82
582 588 5.345307 TCTTCAGATAGAGGGGATGATCA 57.655 43.478 0.00 0.00 0.00 2.92
593 599 6.769134 TTACCGTGTGATTCTTCAGATAGA 57.231 37.500 0.00 0.00 30.85 1.98
599 606 4.688879 GTGTGATTACCGTGTGATTCTTCA 59.311 41.667 0.00 0.00 0.00 3.02
628 635 0.953960 AAGTGAATCCCGAACGCCAC 60.954 55.000 0.00 0.00 0.00 5.01
631 638 1.393883 GAAGAAGTGAATCCCGAACGC 59.606 52.381 0.00 0.00 0.00 4.84
637 644 4.657013 AGTTGAAGGAAGAAGTGAATCCC 58.343 43.478 0.00 0.00 33.55 3.85
647 654 7.176690 GGGAACAATATTGAAGTTGAAGGAAGA 59.823 37.037 22.16 0.00 0.00 2.87
648 655 7.315890 GGGAACAATATTGAAGTTGAAGGAAG 58.684 38.462 22.16 0.00 0.00 3.46
670 677 2.704190 TAAAATGTGCCAAAGGGGGA 57.296 45.000 0.00 0.00 37.04 4.81
903 932 4.284746 ACTCAAACCAAACTTCAAACCCAA 59.715 37.500 0.00 0.00 0.00 4.12
904 933 3.835395 ACTCAAACCAAACTTCAAACCCA 59.165 39.130 0.00 0.00 0.00 4.51
905 934 4.465632 ACTCAAACCAAACTTCAAACCC 57.534 40.909 0.00 0.00 0.00 4.11
906 935 5.041287 GCTACTCAAACCAAACTTCAAACC 58.959 41.667 0.00 0.00 0.00 3.27
907 936 5.743872 CAGCTACTCAAACCAAACTTCAAAC 59.256 40.000 0.00 0.00 0.00 2.93
908 937 5.417580 ACAGCTACTCAAACCAAACTTCAAA 59.582 36.000 0.00 0.00 0.00 2.69
909 938 4.947388 ACAGCTACTCAAACCAAACTTCAA 59.053 37.500 0.00 0.00 0.00 2.69
910 939 4.523083 ACAGCTACTCAAACCAAACTTCA 58.477 39.130 0.00 0.00 0.00 3.02
911 940 4.023963 GGACAGCTACTCAAACCAAACTTC 60.024 45.833 0.00 0.00 0.00 3.01
919 948 2.059541 GACGTGGACAGCTACTCAAAC 58.940 52.381 0.00 0.00 0.00 2.93
930 961 4.662961 CCGCTGCTGACGTGGACA 62.663 66.667 0.00 0.00 33.93 4.02
1092 1156 1.376249 ATCCCTCCTCCTCCTCCTCC 61.376 65.000 0.00 0.00 0.00 4.30
1093 1157 0.178935 CATCCCTCCTCCTCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
1094 1158 0.631998 TCATCCCTCCTCCTCCTCCT 60.632 60.000 0.00 0.00 0.00 3.69
1095 1159 0.491371 ATCATCCCTCCTCCTCCTCC 59.509 60.000 0.00 0.00 0.00 4.30
1096 1160 1.643310 CATCATCCCTCCTCCTCCTC 58.357 60.000 0.00 0.00 0.00 3.71
1097 1161 0.473501 GCATCATCCCTCCTCCTCCT 60.474 60.000 0.00 0.00 0.00 3.69
1260 1324 4.445545 GCGCCGGCTCAGTTTTCG 62.446 66.667 26.68 6.32 35.83 3.46
1451 1515 2.669133 CCGGAGCCAGATGTCCCAA 61.669 63.158 0.00 0.00 0.00 4.12
1457 1521 4.899239 GCCGACCGGAGCCAGATG 62.899 72.222 9.46 0.00 37.50 2.90
1463 1527 4.200283 CAGAGAGCCGACCGGAGC 62.200 72.222 9.46 8.31 37.50 4.70
1464 1528 4.200283 GCAGAGAGCCGACCGGAG 62.200 72.222 9.46 0.51 37.50 4.63
1488 1552 1.993370 ACGCGAGTTTAATCAGACAGC 59.007 47.619 15.93 0.00 46.40 4.40
1495 1559 1.079875 TCGGGCACGCGAGTTTAATC 61.080 55.000 15.93 0.00 46.40 1.75
1687 1751 3.230976 TGCAAACTCCACTAGACAGAGA 58.769 45.455 13.03 0.00 0.00 3.10
1697 1761 1.024271 TGACAAGCTGCAAACTCCAC 58.976 50.000 1.02 0.00 0.00 4.02
1699 1763 2.035066 ACAATGACAAGCTGCAAACTCC 59.965 45.455 1.02 0.00 0.00 3.85
1711 1775 3.566322 CCGTAAACAAGGGACAATGACAA 59.434 43.478 0.00 0.00 34.90 3.18
1781 1845 0.766131 TGGAACGAAGGGCTTTACCA 59.234 50.000 0.00 0.00 42.05 3.25
1793 1857 2.483014 AAAATGGGTCGATGGAACGA 57.517 45.000 0.00 0.00 40.00 3.85
1808 1872 5.765182 CGAGCATAACAGGGGATTCTAAAAT 59.235 40.000 0.00 0.00 0.00 1.82
1811 1875 3.709653 ACGAGCATAACAGGGGATTCTAA 59.290 43.478 0.00 0.00 0.00 2.10
1851 1915 2.215191 AGCCATCGCTGAATCTCCA 58.785 52.632 0.00 0.00 46.19 3.86
1866 1930 4.646572 AGGCATATTAAGAGTGCTTAGCC 58.353 43.478 0.29 0.00 41.21 3.93
2025 2089 1.448985 TATTGTCAGGCGGAACTTGC 58.551 50.000 0.00 0.00 0.00 4.01
2083 2148 1.615919 CCCAACCACCATACCTGAACC 60.616 57.143 0.00 0.00 0.00 3.62
2376 2442 6.625532 AGAACCAAATTAAGGAATGGCAAT 57.374 33.333 0.00 0.00 36.37 3.56
2406 2472 3.373439 GCTAACATGAGCTTTGACAGAGG 59.627 47.826 0.00 0.00 39.50 3.69
2454 2520 5.496556 ACTACTGGCTTGTTGCAACATATA 58.503 37.500 31.48 16.87 45.15 0.86
2596 2670 5.437289 TGTTGGAAGTTATTCAAGTGCAG 57.563 39.130 0.00 0.00 37.15 4.41
2614 2688 7.795272 GCACTGCTCTTAAAAATTTCAATGTTG 59.205 33.333 0.00 0.00 0.00 3.33
2625 2699 5.312895 TGATACTGGCACTGCTCTTAAAAA 58.687 37.500 0.00 0.00 0.00 1.94
2685 2759 7.296628 TGGCTTCCTATTTGTTATGTTTGTT 57.703 32.000 0.00 0.00 0.00 2.83
2880 2955 9.606631 GGAACAGATATATAATGGCTCTAAAGG 57.393 37.037 3.24 0.00 0.00 3.11
2883 2958 7.265673 GCGGAACAGATATATAATGGCTCTAA 58.734 38.462 3.24 0.00 0.00 2.10
2884 2959 6.459710 CGCGGAACAGATATATAATGGCTCTA 60.460 42.308 0.00 0.00 0.00 2.43
2890 2965 5.778161 TTGCGCGGAACAGATATATAATG 57.222 39.130 9.68 0.00 0.00 1.90
2899 2974 0.739462 ATCGAATTGCGCGGAACAGA 60.739 50.000 17.40 15.49 40.61 3.41
3173 3249 2.538449 AGTGCACTACGAGTTTTGTTCG 59.462 45.455 20.16 0.00 43.38 3.95
3239 3324 3.992943 TTGGACCAGGAAATGTCGTAT 57.007 42.857 0.00 0.00 32.19 3.06
3285 3370 2.844451 GCGGAACCAAAGTGCAGCA 61.844 57.895 0.00 0.00 41.98 4.41
3286 3371 2.050077 GCGGAACCAAAGTGCAGC 60.050 61.111 0.00 0.00 35.46 5.25
3287 3372 2.644992 GGCGGAACCAAAGTGCAG 59.355 61.111 0.00 0.00 38.86 4.41
3291 3376 2.203437 GTGGGGCGGAACCAAAGT 60.203 61.111 0.00 0.00 40.24 2.66
3326 3414 1.135139 CGTCTGATCCTTGTCCGACAT 59.865 52.381 1.09 0.00 33.54 3.06
3342 3430 7.722363 TGTTATACATATGACATGTTCCGTCT 58.278 34.615 10.38 0.00 34.37 4.18
3365 3453 6.886459 ACACATATTTGCATAAAGACTCCTGT 59.114 34.615 0.00 0.00 0.00 4.00
3371 3459 6.771076 TCGTGACACATATTTGCATAAAGAC 58.229 36.000 6.37 0.00 0.00 3.01
3393 3481 2.288030 GGTATGTAACCTCCACCGATCG 60.288 54.545 8.51 8.51 45.75 3.69
3499 3805 2.415697 GCAAACAACTGTGCGGTAAT 57.584 45.000 0.00 0.00 0.00 1.89
3543 3849 7.021196 CAGTGAACCATTACTTAAATCAACCG 58.979 38.462 0.00 0.00 0.00 4.44
3544 3850 6.806739 GCAGTGAACCATTACTTAAATCAACC 59.193 38.462 0.00 0.00 0.00 3.77
3630 3936 7.227512 GGTGTCTCATTATCTCCGAAAATCAAT 59.772 37.037 0.00 0.00 0.00 2.57
3639 3945 2.959030 TCCTGGTGTCTCATTATCTCCG 59.041 50.000 0.00 0.00 0.00 4.63
3788 4094 3.829026 ACACACAACAGAGAGATCAGCTA 59.171 43.478 0.00 0.00 0.00 3.32
3859 4173 4.285003 CCCGATGATTAATAGGTACCCACA 59.715 45.833 8.74 0.00 29.24 4.17
3898 4212 3.940657 CTTCGCTGAATAGAAGCTTGG 57.059 47.619 2.10 0.00 37.62 3.61
3937 4251 2.010145 CCCGAGGGTCATTATATGCG 57.990 55.000 0.00 0.00 0.00 4.73
3982 4296 4.625742 CCGTCCCATAATATAAGAGCGTTG 59.374 45.833 0.00 0.00 0.00 4.10
3984 4298 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3985 4299 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3986 4300 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3987 4301 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3988 4302 5.279562 TCCCTCCGTCCCATAATATAAGA 57.720 43.478 0.00 0.00 0.00 2.10
3989 4303 6.561519 ATTCCCTCCGTCCCATAATATAAG 57.438 41.667 0.00 0.00 0.00 1.73
3992 4306 8.814448 ATATTATTCCCTCCGTCCCATAATAT 57.186 34.615 0.00 0.00 30.25 1.28
3994 4308 7.525158 AATATTATTCCCTCCGTCCCATAAT 57.475 36.000 0.00 0.00 0.00 1.28
3999 4313 6.370186 ACTAAATATTATTCCCTCCGTCCC 57.630 41.667 0.00 0.00 0.00 4.46
4000 4314 8.202811 GGATACTAAATATTATTCCCTCCGTCC 58.797 40.741 0.00 0.00 0.00 4.79
4001 4315 8.755977 TGGATACTAAATATTATTCCCTCCGTC 58.244 37.037 0.00 0.00 37.61 4.79
4002 4316 8.537858 GTGGATACTAAATATTATTCCCTCCGT 58.462 37.037 0.00 0.00 37.61 4.69
4003 4317 8.759782 AGTGGATACTAAATATTATTCCCTCCG 58.240 37.037 0.00 0.00 34.74 4.63
4033 4355 7.551974 AGCTAATGCATATCCACAATCTCATAC 59.448 37.037 0.00 0.00 42.74 2.39
4040 4362 6.964807 TCAAAGCTAATGCATATCCACAAT 57.035 33.333 0.00 0.00 42.74 2.71
4048 4370 7.643764 GCGAAGTTTAATCAAAGCTAATGCATA 59.356 33.333 0.00 0.00 42.74 3.14
4261 4595 1.411612 ACCGAAACTGGACGAGAAAGT 59.588 47.619 0.00 0.00 0.00 2.66
4262 4596 2.150397 ACCGAAACTGGACGAGAAAG 57.850 50.000 0.00 0.00 0.00 2.62
4310 4644 3.453717 AGCTGACAGCAAGATCCAAGATA 59.546 43.478 28.43 0.00 45.56 1.98
4360 4694 6.099701 ACACATCATATCTACTTAGCCAACCA 59.900 38.462 0.00 0.00 0.00 3.67
4434 4768 4.503643 CCAAAGTGGATGTGCAGGAAAAAT 60.504 41.667 0.00 0.00 40.96 1.82
4435 4769 3.181467 CCAAAGTGGATGTGCAGGAAAAA 60.181 43.478 0.00 0.00 40.96 1.94
4489 4825 5.659440 ACAAGATTTGGTGTGTTCAGTTT 57.341 34.783 0.00 0.00 34.12 2.66
4553 4889 6.930667 TCTAAATTTAATTACCAGGACGCC 57.069 37.500 0.00 0.00 0.00 5.68
4575 4911 7.945134 AGCTGGTTAATTATGGAATCACATTC 58.055 34.615 0.00 0.00 38.55 2.67
4674 5016 1.737735 TGCAGAATGAGTGGACGCG 60.738 57.895 3.53 3.53 39.69 6.01
4730 5075 4.925068 ACACGTACAAAGTTCTAGTCGTT 58.075 39.130 0.00 0.00 0.00 3.85
4891 5348 2.568956 TCCATTGAACAGAGACTGGGAG 59.431 50.000 0.00 0.00 35.51 4.30
4998 5455 4.963276 TGTATTCTTTCCATCAAAGCCG 57.037 40.909 0.00 0.00 41.38 5.52
5019 5476 0.037419 GCCACCACAAATCGCCAAAT 60.037 50.000 0.00 0.00 0.00 2.32
5087 5544 9.743057 AACTTCAACTCTCGAAGATATCAATAG 57.257 33.333 5.32 0.00 42.05 1.73
5100 5566 9.370126 CAATACAAACTAAAACTTCAACTCTCG 57.630 33.333 0.00 0.00 0.00 4.04
5117 5583 7.608755 CAGTTTGCTGTTTACACAATACAAAC 58.391 34.615 18.23 18.23 43.48 2.93
5165 5631 4.828939 CCACAGGCCAACATATGATACATT 59.171 41.667 10.38 0.00 0.00 2.71
5215 5684 7.884877 TGGAGTAGAAAATATGGCATCTATTGG 59.115 37.037 1.65 0.00 0.00 3.16
5219 5688 8.206126 TGATGGAGTAGAAAATATGGCATCTA 57.794 34.615 1.65 0.00 0.00 1.98
5319 5792 4.941263 TGCTAACTGATAAACTTCCGCAAT 59.059 37.500 0.00 0.00 0.00 3.56
5324 5797 8.451908 ACCAATATGCTAACTGATAAACTTCC 57.548 34.615 0.00 0.00 0.00 3.46
5356 5829 6.208599 GGGGAAACATATGTCACTTCTTGAAA 59.791 38.462 9.23 0.00 35.39 2.69
5399 5872 5.644977 TTATACGATGCTACAGAGATGGG 57.355 43.478 0.00 0.00 0.00 4.00
5453 5926 8.331730 ACATTATGGTTCTTTGTAGGTAACAC 57.668 34.615 0.00 0.00 38.00 3.32
5515 6113 9.374838 GAAAGACAAATATTTAGGAACGGAGTA 57.625 33.333 0.00 0.00 45.00 2.59
5517 6115 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5518 6116 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5519 6117 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5532 6130 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5533 6131 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5534 6132 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5535 6133 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5536 6134 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5537 6135 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5538 6136 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5539 6137 8.861086 AGTAGTCACTTGTTGAAATCTCTAGAA 58.139 33.333 0.00 0.00 35.39 2.10
5540 6138 8.410673 AGTAGTCACTTGTTGAAATCTCTAGA 57.589 34.615 0.00 0.00 35.39 2.43
5541 6139 9.562583 GTAGTAGTCACTTGTTGAAATCTCTAG 57.437 37.037 0.00 0.00 35.39 2.43
5542 6140 8.235226 CGTAGTAGTCACTTGTTGAAATCTCTA 58.765 37.037 0.00 0.00 35.39 2.43
5543 6141 7.085116 CGTAGTAGTCACTTGTTGAAATCTCT 58.915 38.462 0.00 0.00 35.39 3.10
5544 6142 6.308282 CCGTAGTAGTCACTTGTTGAAATCTC 59.692 42.308 0.00 0.00 35.39 2.75
5545 6143 6.015688 TCCGTAGTAGTCACTTGTTGAAATCT 60.016 38.462 0.00 0.00 35.39 2.40
5546 6144 6.154445 TCCGTAGTAGTCACTTGTTGAAATC 58.846 40.000 0.00 0.00 35.39 2.17
5547 6145 6.092955 TCCGTAGTAGTCACTTGTTGAAAT 57.907 37.500 0.00 0.00 35.39 2.17
5548 6146 5.518848 TCCGTAGTAGTCACTTGTTGAAA 57.481 39.130 0.00 0.00 35.39 2.69
5549 6147 4.558095 GCTCCGTAGTAGTCACTTGTTGAA 60.558 45.833 0.00 0.00 35.39 2.69
5550 6148 3.057736 GCTCCGTAGTAGTCACTTGTTGA 60.058 47.826 0.00 0.00 36.14 3.18
5551 6149 3.243336 GCTCCGTAGTAGTCACTTGTTG 58.757 50.000 0.00 0.00 36.14 3.33
5552 6150 2.889045 TGCTCCGTAGTAGTCACTTGTT 59.111 45.455 0.00 0.00 36.14 2.83
5553 6151 2.511659 TGCTCCGTAGTAGTCACTTGT 58.488 47.619 0.00 0.00 36.14 3.16
5554 6152 3.570926 TTGCTCCGTAGTAGTCACTTG 57.429 47.619 0.00 0.00 36.14 3.16
5555 6153 4.595762 TTTTGCTCCGTAGTAGTCACTT 57.404 40.909 0.00 0.00 36.14 3.16
5556 6154 4.219944 TCATTTTGCTCCGTAGTAGTCACT 59.780 41.667 0.00 0.00 38.91 3.41
5557 6155 4.491676 TCATTTTGCTCCGTAGTAGTCAC 58.508 43.478 0.00 0.00 0.00 3.67
5558 6156 4.219944 ACTCATTTTGCTCCGTAGTAGTCA 59.780 41.667 0.00 0.00 0.00 3.41
5559 6157 4.563184 CACTCATTTTGCTCCGTAGTAGTC 59.437 45.833 0.00 0.00 0.00 2.59
5560 6158 4.219944 TCACTCATTTTGCTCCGTAGTAGT 59.780 41.667 0.00 0.00 0.00 2.73
5561 6159 4.744570 TCACTCATTTTGCTCCGTAGTAG 58.255 43.478 0.00 0.00 0.00 2.57
5562 6160 4.794278 TCACTCATTTTGCTCCGTAGTA 57.206 40.909 0.00 0.00 0.00 1.82
5563 6161 3.678056 TCACTCATTTTGCTCCGTAGT 57.322 42.857 0.00 0.00 0.00 2.73
5564 6162 5.551760 AATTCACTCATTTTGCTCCGTAG 57.448 39.130 0.00 0.00 0.00 3.51
5565 6163 5.957842 AAATTCACTCATTTTGCTCCGTA 57.042 34.783 0.00 0.00 0.00 4.02
5566 6164 4.853924 AAATTCACTCATTTTGCTCCGT 57.146 36.364 0.00 0.00 0.00 4.69
5567 6165 5.569059 GTGTAAATTCACTCATTTTGCTCCG 59.431 40.000 0.00 0.00 35.68 4.63
5568 6166 6.681777 AGTGTAAATTCACTCATTTTGCTCC 58.318 36.000 0.00 0.00 44.07 4.70
5598 6196 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
5600 6198 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
5601 6199 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
5602 6200 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
5603 6201 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
5604 6202 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
5605 6203 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
5606 6204 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
5607 6205 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
5608 6206 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
5609 6207 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
5622 6220 7.687941 TTTCAGAGATTTCAAATGGACTACC 57.312 36.000 0.00 0.00 0.00 3.18
5623 6221 9.003658 TCTTTTCAGAGATTTCAAATGGACTAC 57.996 33.333 0.00 0.00 0.00 2.73
5624 6222 9.003658 GTCTTTTCAGAGATTTCAAATGGACTA 57.996 33.333 0.00 0.00 0.00 2.59
5625 6223 7.503566 TGTCTTTTCAGAGATTTCAAATGGACT 59.496 33.333 0.00 0.00 0.00 3.85
5626 6224 7.651808 TGTCTTTTCAGAGATTTCAAATGGAC 58.348 34.615 0.00 0.00 0.00 4.02
5627 6225 7.822161 TGTCTTTTCAGAGATTTCAAATGGA 57.178 32.000 0.00 0.00 0.00 3.41
5628 6226 8.876275 TTTGTCTTTTCAGAGATTTCAAATGG 57.124 30.769 0.00 0.00 0.00 3.16
5639 6237 9.760660 CGTTCCTAAATATTTGTCTTTTCAGAG 57.239 33.333 11.05 0.00 0.00 3.35
5640 6238 8.726988 CCGTTCCTAAATATTTGTCTTTTCAGA 58.273 33.333 11.05 0.00 0.00 3.27
5641 6239 8.726988 TCCGTTCCTAAATATTTGTCTTTTCAG 58.273 33.333 11.05 0.00 0.00 3.02
5642 6240 8.624367 TCCGTTCCTAAATATTTGTCTTTTCA 57.376 30.769 11.05 0.00 0.00 2.69
5643 6241 8.182227 CCTCCGTTCCTAAATATTTGTCTTTTC 58.818 37.037 11.05 0.00 0.00 2.29
5644 6242 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
5645 6243 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5646 6244 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5647 6245 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5648 6246 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5649 6247 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5650 6248 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5651 6249 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5652 6250 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
5653 6251 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5654 6252 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5655 6253 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5656 6254 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5657 6255 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
5658 6256 3.525199 AGTAACTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
5659 6257 2.311243 AGTAACTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
5660 6258 2.426381 CAGTAACTACTCCCTCCGTTCC 59.574 54.545 0.00 0.00 33.46 3.62
5661 6259 3.350833 TCAGTAACTACTCCCTCCGTTC 58.649 50.000 0.00 0.00 33.46 3.95
5662 6260 3.446442 TCAGTAACTACTCCCTCCGTT 57.554 47.619 0.00 0.00 33.46 4.44
5663 6261 3.666345 ATCAGTAACTACTCCCTCCGT 57.334 47.619 0.00 0.00 33.46 4.69
5664 6262 5.359009 TGTTAATCAGTAACTACTCCCTCCG 59.641 44.000 0.00 0.00 42.36 4.63
5665 6263 6.154021 TGTGTTAATCAGTAACTACTCCCTCC 59.846 42.308 0.00 0.00 42.36 4.30
5666 6264 7.093858 ACTGTGTTAATCAGTAACTACTCCCTC 60.094 40.741 12.44 0.00 43.17 4.30
5667 6265 6.724905 ACTGTGTTAATCAGTAACTACTCCCT 59.275 38.462 12.44 0.00 43.17 4.20
5668 6266 6.932947 ACTGTGTTAATCAGTAACTACTCCC 58.067 40.000 12.44 0.00 43.17 4.30
5699 6297 5.163561 TGTGCCATAGCCAGCTTAATTTAAC 60.164 40.000 0.00 0.00 38.69 2.01
5727 6325 6.681729 TTCACTGGTCCTGTAGATTTAACT 57.318 37.500 0.37 0.00 0.00 2.24
5890 6491 2.009051 GGTTCATCGTGTGCATCATCA 58.991 47.619 0.00 0.00 0.00 3.07
5961 6562 4.062991 AGCGTCTTATTCCAAGTTCGTTT 58.937 39.130 0.00 0.00 0.00 3.60
5963 6564 3.314541 AGCGTCTTATTCCAAGTTCGT 57.685 42.857 0.00 0.00 0.00 3.85
5980 6581 1.165270 CCCACAAAACCCTCTAAGCG 58.835 55.000 0.00 0.00 0.00 4.68
5985 6586 2.244769 CCATATCCCCACAAAACCCTCT 59.755 50.000 0.00 0.00 0.00 3.69
6008 6609 1.602323 GATTGGCGGGACACAACCA 60.602 57.895 0.00 0.00 0.00 3.67
6009 6610 0.965363 ATGATTGGCGGGACACAACC 60.965 55.000 0.00 0.00 0.00 3.77
6010 6611 0.171007 CATGATTGGCGGGACACAAC 59.829 55.000 0.00 0.00 0.00 3.32
6011 6612 1.594194 GCATGATTGGCGGGACACAA 61.594 55.000 0.00 0.00 0.00 3.33
6012 6613 2.045708 GCATGATTGGCGGGACACA 61.046 57.895 0.00 0.00 0.00 3.72
6132 6733 1.066430 TGTGGACGCTAAGGGTCAATC 60.066 52.381 10.17 1.71 45.38 2.67
6171 6772 6.966534 ACAAAATTCTTCTCACCATTCACT 57.033 33.333 0.00 0.00 0.00 3.41
6195 6796 3.366396 TCCTTGGCAGTTTTGTAAACCA 58.634 40.909 0.00 0.00 0.00 3.67
6234 6835 9.113838 AGCAAATAATATCACTAACTGAACTGG 57.886 33.333 0.00 0.00 30.60 4.00
6392 7020 7.764443 TCCATTAAGCATTACTGAGTGTAGAAC 59.236 37.037 0.00 0.00 33.55 3.01
6393 7021 7.847096 TCCATTAAGCATTACTGAGTGTAGAA 58.153 34.615 0.00 0.00 33.55 2.10
6394 7022 7.418337 TCCATTAAGCATTACTGAGTGTAGA 57.582 36.000 0.00 0.00 33.55 2.59
6395 7023 7.981789 TCTTCCATTAAGCATTACTGAGTGTAG 59.018 37.037 0.00 0.00 33.55 2.74
6396 7024 7.847096 TCTTCCATTAAGCATTACTGAGTGTA 58.153 34.615 0.00 0.00 33.55 2.90
6397 7025 6.711277 TCTTCCATTAAGCATTACTGAGTGT 58.289 36.000 0.00 0.00 33.55 3.55
6398 7026 7.798596 ATCTTCCATTAAGCATTACTGAGTG 57.201 36.000 0.00 0.00 33.55 3.51
6440 7071 0.108804 GAACGTCAATCGGGCAGAGA 60.109 55.000 0.00 0.00 44.69 3.10
6565 7196 5.152623 TCTTCTGAACTTCAGGTGTATGG 57.847 43.478 17.12 2.91 44.39 2.74
6811 7444 2.719739 AGTGATTCACCAATGAGCCTG 58.280 47.619 13.14 0.00 35.83 4.85
6891 7524 5.033589 TGGAAGCCAACACAATTTCAAAT 57.966 34.783 0.00 0.00 0.00 2.32
7133 7770 3.124636 GTCGTGTCATTGTTCCACCATAC 59.875 47.826 0.00 0.00 0.00 2.39
7136 7773 1.140052 AGTCGTGTCATTGTTCCACCA 59.860 47.619 0.00 0.00 0.00 4.17
7158 7795 2.795121 CGGAGATGAAACTTTCTGCG 57.205 50.000 3.22 0.00 45.08 5.18
7169 7806 9.535170 AAGAGAATAATAATAGACCGGAGATGA 57.465 33.333 9.46 0.00 0.00 2.92
7176 7813 9.967346 TGACAAGAAGAGAATAATAATAGACCG 57.033 33.333 0.00 0.00 0.00 4.79
7263 7900 6.839124 TTTGCATAATTCCAGATCACTGTT 57.161 33.333 0.00 0.00 42.05 3.16
7267 7904 7.887996 TTTGTTTTGCATAATTCCAGATCAC 57.112 32.000 0.00 0.00 0.00 3.06
7302 7939 6.757897 AAAACACATAATCCACGTGATGAT 57.242 33.333 19.30 9.42 32.68 2.45
7331 7968 8.121305 TGACATGAAAACATGCCTTTAGTTAT 57.879 30.769 0.00 0.00 36.08 1.89
7370 8007 8.510132 TCGATTATTTTCCGTTTTTCCTTTTC 57.490 30.769 0.00 0.00 0.00 2.29
7384 8021 9.646427 AGGCATATTCTACTCTCGATTATTTTC 57.354 33.333 0.00 0.00 0.00 2.29
7417 8054 3.366883 GCAAGTCCACTAGTCTGACTGAG 60.367 52.174 20.19 16.93 39.22 3.35
7448 8085 7.839907 ACCTGTACAACCGTACTCAATATTTA 58.160 34.615 0.00 0.00 46.88 1.40
7449 8086 6.704310 ACCTGTACAACCGTACTCAATATTT 58.296 36.000 0.00 0.00 46.88 1.40
7450 8087 6.290294 ACCTGTACAACCGTACTCAATATT 57.710 37.500 0.00 0.00 46.88 1.28
7451 8088 5.927281 ACCTGTACAACCGTACTCAATAT 57.073 39.130 0.00 0.00 46.88 1.28
7452 8089 6.350110 GGTTACCTGTACAACCGTACTCAATA 60.350 42.308 0.00 0.00 46.88 1.90
7464 8101 1.436326 TGGCTGGGTTACCTGTACAA 58.564 50.000 0.00 0.00 37.95 2.41
7495 8139 3.589988 ACTGTGCTATCGTTTCTTCAGG 58.410 45.455 0.00 0.00 0.00 3.86
7516 8160 7.885922 TGGCAGGACTTTAACAATTATCAGTTA 59.114 33.333 0.00 0.00 0.00 2.24
7521 8165 7.067494 ACTCATGGCAGGACTTTAACAATTATC 59.933 37.037 0.00 0.00 0.00 1.75
7548 8192 5.530519 TGAAGACATAGTCAATGCGAAAC 57.469 39.130 0.00 0.00 39.39 2.78
7564 8208 6.122277 TCCATTTAGTGATGGGAATGAAGAC 58.878 40.000 4.23 0.00 45.42 3.01
7865 8531 2.145397 AGCAGAGAACCGATGGTAGA 57.855 50.000 0.00 0.00 33.12 2.59
7867 8533 2.166459 CAGAAGCAGAGAACCGATGGTA 59.834 50.000 0.00 0.00 33.12 3.25
7901 8567 4.069232 CGTCCTTCTCGCCCTGCA 62.069 66.667 0.00 0.00 0.00 4.41
7956 8623 5.392272 CCTCGTCAATTTTGCTCATCAATGA 60.392 40.000 0.00 0.00 34.12 2.57
7976 8643 5.637006 TTCCCAAATACAACATTTCCTCG 57.363 39.130 0.00 0.00 0.00 4.63
8011 8679 9.188588 CAACCATTATAGATCATGACATTTTGC 57.811 33.333 0.00 0.00 0.00 3.68
8101 8769 5.190528 TCCATGGAGCTCTTTAGTCTGAAAT 59.809 40.000 11.44 0.00 0.00 2.17
8130 8798 4.276926 GCGGATGAGAATTAATTTGCTCCT 59.723 41.667 12.12 4.99 0.00 3.69
8154 8822 9.401873 CATGTGATCGCATATGTTAAAATGATT 57.598 29.630 20.90 0.00 38.41 2.57
8233 8901 3.335579 ACACTATTCTCTTTTGGTCGGC 58.664 45.455 0.00 0.00 0.00 5.54
8234 8902 7.611213 AAATACACTATTCTCTTTTGGTCGG 57.389 36.000 0.00 0.00 0.00 4.79
8304 9071 9.364989 CAACCTCAAAAGAATTAAGAAAACACA 57.635 29.630 0.00 0.00 0.00 3.72
8312 9079 9.654417 CAATTTTGCAACCTCAAAAGAATTAAG 57.346 29.630 0.00 0.00 45.55 1.85
8357 9124 0.850100 TGGACCCAAGTGTCACCAAT 59.150 50.000 0.00 0.00 36.97 3.16
8409 9192 8.633075 ATTATTTGTGGCAAATTTAGTCATCG 57.367 30.769 11.59 0.00 0.00 3.84
8430 9240 6.340522 GCAAACACATTTTGCCTAGGATTAT 58.659 36.000 14.75 0.00 46.51 1.28
8456 9266 2.594592 GTGCTCCGTGCTTTGGGT 60.595 61.111 0.00 0.00 43.37 4.51
8471 9282 1.917303 GCACTTGTCGGTTGTTTTGTG 59.083 47.619 0.00 0.00 0.00 3.33
8479 9297 0.655733 CTTTGTCGCACTTGTCGGTT 59.344 50.000 0.00 0.00 0.00 4.44
8552 9372 7.253422 AGAATAAATCCAAATGCTCTTGTTCG 58.747 34.615 0.00 0.00 0.00 3.95
8579 9419 6.475076 TCAAAAACGGATGCATATGTTATTGC 59.525 34.615 14.40 0.00 39.33 3.56
8581 9421 8.031864 TGTTCAAAAACGGATGCATATGTTATT 58.968 29.630 14.40 9.42 38.28 1.40
8654 9494 9.899226 GAGTCTTGTTTATATCTTTTGTTGCTT 57.101 29.630 0.00 0.00 0.00 3.91
8655 9495 8.515414 GGAGTCTTGTTTATATCTTTTGTTGCT 58.485 33.333 0.00 0.00 0.00 3.91
8656 9496 8.296713 TGGAGTCTTGTTTATATCTTTTGTTGC 58.703 33.333 0.00 0.00 0.00 4.17
8662 9502 9.807921 TCCTTTTGGAGTCTTGTTTATATCTTT 57.192 29.630 0.00 0.00 45.19 2.52
8776 9903 8.909708 ACCATCAATAATGACATTACAAAACG 57.090 30.769 10.06 0.89 38.69 3.60
8814 9942 4.583907 TCAGATGATGCAAAGTTTGACCAA 59.416 37.500 19.82 2.16 0.00 3.67
8871 9999 9.675464 AATATTTTCTAATTTCGTACTCCACCA 57.325 29.630 0.00 0.00 0.00 4.17
8910 10038 7.769272 TGCTTTTTATTCTCAAAAGTGTTGG 57.231 32.000 6.93 0.00 41.46 3.77
8917 10045 7.047271 AGGTTGCTTGCTTTTTATTCTCAAAA 58.953 30.769 0.00 0.00 0.00 2.44
8920 10048 5.278957 GGAGGTTGCTTGCTTTTTATTCTCA 60.279 40.000 0.00 0.00 0.00 3.27
8921 10049 5.164233 GGAGGTTGCTTGCTTTTTATTCTC 58.836 41.667 0.00 0.00 0.00 2.87
8922 10050 4.321230 CGGAGGTTGCTTGCTTTTTATTCT 60.321 41.667 0.00 0.00 0.00 2.40
8923 10051 3.920412 CGGAGGTTGCTTGCTTTTTATTC 59.080 43.478 0.00 0.00 0.00 1.75
8926 10059 2.292292 GACGGAGGTTGCTTGCTTTTTA 59.708 45.455 0.00 0.00 0.00 1.52
8928 10061 0.668535 GACGGAGGTTGCTTGCTTTT 59.331 50.000 0.00 0.00 0.00 2.27
8929 10062 1.172812 GGACGGAGGTTGCTTGCTTT 61.173 55.000 0.00 0.00 0.00 3.51
8932 10065 3.056328 GGGACGGAGGTTGCTTGC 61.056 66.667 0.00 0.00 0.00 4.01
8946 10079 3.073356 ACTCCAAACCAACTAATTCGGGA 59.927 43.478 0.00 0.00 0.00 5.14
8954 10087 6.681729 ATCTAGACAACTCCAAACCAACTA 57.318 37.500 0.00 0.00 0.00 2.24
8955 10088 5.568620 ATCTAGACAACTCCAAACCAACT 57.431 39.130 0.00 0.00 0.00 3.16
8960 10093 5.749109 CGGATGTATCTAGACAACTCCAAAC 59.251 44.000 16.84 0.00 30.77 2.93
8964 10097 3.890147 ACCGGATGTATCTAGACAACTCC 59.110 47.826 9.46 5.30 31.83 3.85
8966 10099 4.533815 TCACCGGATGTATCTAGACAACT 58.466 43.478 9.46 0.00 31.83 3.16
8967 10100 4.913335 TCACCGGATGTATCTAGACAAC 57.087 45.455 9.46 0.00 31.83 3.32
8968 10101 6.066032 TGTATCACCGGATGTATCTAGACAA 58.934 40.000 9.46 0.00 34.89 3.18
8980 10113 4.823442 TCGTAGTTGTATGTATCACCGGAT 59.177 41.667 9.46 0.00 37.55 4.18
9006 10139 4.489771 GCTATGGGCTGGGCACGT 62.490 66.667 0.00 0.00 32.76 4.49
9017 10150 2.098607 TGGTTCGTCGTTCTAGCTATGG 59.901 50.000 0.00 0.00 0.00 2.74
9019 10152 4.171754 GTTTGGTTCGTCGTTCTAGCTAT 58.828 43.478 0.00 0.00 0.00 2.97
9020 10153 3.004629 TGTTTGGTTCGTCGTTCTAGCTA 59.995 43.478 0.00 0.00 0.00 3.32
9021 10154 2.223876 TGTTTGGTTCGTCGTTCTAGCT 60.224 45.455 0.00 0.00 0.00 3.32
9022 10155 2.129607 TGTTTGGTTCGTCGTTCTAGC 58.870 47.619 0.00 0.00 0.00 3.42
9024 10157 3.000122 CGTTTGTTTGGTTCGTCGTTCTA 60.000 43.478 0.00 0.00 0.00 2.10
9025 10158 2.222863 CGTTTGTTTGGTTCGTCGTTCT 60.223 45.455 0.00 0.00 0.00 3.01
9026 10159 2.095875 CGTTTGTTTGGTTCGTCGTTC 58.904 47.619 0.00 0.00 0.00 3.95
9028 10161 1.060986 GACGTTTGTTTGGTTCGTCGT 59.939 47.619 0.00 0.00 40.58 4.34
9029 10162 1.721991 GACGTTTGTTTGGTTCGTCG 58.278 50.000 0.00 0.00 40.58 5.12
9051 10184 0.033366 GCCGTCCCACAGCAATTTTT 59.967 50.000 0.00 0.00 0.00 1.94
9052 10185 1.665442 GCCGTCCCACAGCAATTTT 59.335 52.632 0.00 0.00 0.00 1.82
9059 10192 1.622607 TATCCTTGGCCGTCCCACAG 61.623 60.000 0.00 0.00 45.34 3.66
9062 10195 0.399949 ATCTATCCTTGGCCGTCCCA 60.400 55.000 0.00 0.00 43.51 4.37
9071 10204 3.209410 GAGGTTGCCACATCTATCCTTG 58.791 50.000 0.00 0.00 30.62 3.61
9093 10226 1.555533 GTGAATCGAGGAGGAAACCCT 59.444 52.381 0.00 0.00 36.57 4.34
9095 10228 2.622436 CTGTGAATCGAGGAGGAAACC 58.378 52.381 0.00 0.00 0.00 3.27
9099 10232 2.461300 ATCCTGTGAATCGAGGAGGA 57.539 50.000 6.91 0.00 41.76 3.71
9100 10233 3.133721 AGAAATCCTGTGAATCGAGGAGG 59.866 47.826 6.91 0.00 41.76 4.30
9105 10238 5.340803 CGTCTTAGAAATCCTGTGAATCGA 58.659 41.667 0.00 0.00 0.00 3.59
9113 10246 1.571919 CCCGCGTCTTAGAAATCCTG 58.428 55.000 4.92 0.00 0.00 3.86
9121 10254 2.202756 GCAGTCCCCGCGTCTTAG 60.203 66.667 4.92 0.00 0.00 2.18
9122 10255 2.102109 TTTGCAGTCCCCGCGTCTTA 62.102 55.000 4.92 0.00 0.00 2.10
9123 10256 3.469863 TTTGCAGTCCCCGCGTCTT 62.470 57.895 4.92 0.00 0.00 3.01
9124 10257 3.883744 CTTTGCAGTCCCCGCGTCT 62.884 63.158 4.92 0.00 0.00 4.18
9125 10258 3.423154 CTTTGCAGTCCCCGCGTC 61.423 66.667 4.92 0.00 0.00 5.19
9130 10263 4.660938 ACGCCCTTTGCAGTCCCC 62.661 66.667 0.00 0.00 41.33 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.