Multiple sequence alignment - TraesCS5B01G515100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G515100 chr5B 100.000 2814 0 0 1 2814 679678997 679676184 0.000000e+00 5197.0
1 TraesCS5B01G515100 chr5B 92.308 156 10 1 3 158 679678840 679678687 1.310000e-53 220.0
2 TraesCS5B01G515100 chr5B 92.308 156 10 1 158 311 679678995 679678840 1.310000e-53 220.0
3 TraesCS5B01G515100 chr5B 80.282 213 35 6 315 522 673046064 673046274 1.350000e-33 154.0
4 TraesCS5B01G515100 chr5D 87.825 2037 86 71 609 2579 538660626 538658686 0.000000e+00 2239.0
5 TraesCS5B01G515100 chr5D 80.208 192 34 3 311 499 26787615 26787805 1.050000e-29 141.0
6 TraesCS5B01G515100 chr5D 82.759 116 14 4 33 148 538661139 538661030 6.420000e-17 99.0
7 TraesCS5B01G515100 chr4A 85.813 2164 104 84 609 2740 630863400 630865392 0.000000e+00 2108.0
8 TraesCS5B01G515100 chr4A 83.648 318 26 9 2467 2784 630895195 630895486 2.760000e-70 276.0
9 TraesCS5B01G515100 chr4A 78.947 190 32 7 339 522 621239737 621239550 3.810000e-24 122.0
10 TraesCS5B01G515100 chr6D 80.090 221 37 5 312 526 55669365 55669146 1.040000e-34 158.0
11 TraesCS5B01G515100 chr7A 77.586 232 41 8 314 537 660140319 660140547 2.270000e-26 130.0
12 TraesCS5B01G515100 chr5A 78.659 164 30 5 340 499 443010449 443010287 1.380000e-18 104.0
13 TraesCS5B01G515100 chr6B 77.108 166 31 7 339 499 146337894 146338057 3.860000e-14 89.8
14 TraesCS5B01G515100 chr6B 76.829 164 29 9 336 493 335241802 335241962 1.800000e-12 84.2
15 TraesCS5B01G515100 chr2D 76.970 165 33 5 339 499 161569089 161568926 3.860000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G515100 chr5B 679676184 679678997 2813 True 1879 5197 94.872 1 2814 3 chr5B.!!$R1 2813
1 TraesCS5B01G515100 chr5D 538658686 538661139 2453 True 1169 2239 85.292 33 2579 2 chr5D.!!$R1 2546
2 TraesCS5B01G515100 chr4A 630863400 630865392 1992 False 2108 2108 85.813 609 2740 1 chr4A.!!$F1 2131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.105778 TGCGTGTCTGTGTTGATGGA 59.894 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2008 0.032615 ACAGAAACCAACTGGGGCAA 60.033 50.0 0.0 0.0 42.91 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.691049 TGAAAAGAAGCTTTGTGACGG 57.309 42.857 0.00 0.00 0.00 4.79
21 22 3.275143 TGAAAAGAAGCTTTGTGACGGA 58.725 40.909 0.00 0.00 0.00 4.69
22 23 3.064820 TGAAAAGAAGCTTTGTGACGGAC 59.935 43.478 0.00 0.00 0.00 4.79
23 24 2.325583 AAGAAGCTTTGTGACGGACA 57.674 45.000 0.00 0.00 0.00 4.02
24 25 1.871080 AGAAGCTTTGTGACGGACAG 58.129 50.000 0.00 0.00 35.44 3.51
25 26 0.868406 GAAGCTTTGTGACGGACAGG 59.132 55.000 0.00 0.00 35.44 4.00
26 27 0.468226 AAGCTTTGTGACGGACAGGA 59.532 50.000 0.00 0.00 35.44 3.86
27 28 0.468226 AGCTTTGTGACGGACAGGAA 59.532 50.000 0.00 0.00 35.44 3.36
28 29 1.134220 AGCTTTGTGACGGACAGGAAA 60.134 47.619 0.00 0.00 35.44 3.13
29 30 1.264288 GCTTTGTGACGGACAGGAAAG 59.736 52.381 7.22 7.22 35.44 2.62
30 31 1.873591 CTTTGTGACGGACAGGAAAGG 59.126 52.381 0.00 0.00 35.44 3.11
31 32 0.107831 TTGTGACGGACAGGAAAGGG 59.892 55.000 0.00 0.00 35.44 3.95
71 72 9.692325 AAGCTATAGAAAAGTCAGGAAATTCAT 57.308 29.630 3.21 0.00 0.00 2.57
72 73 9.118300 AGCTATAGAAAAGTCAGGAAATTCATG 57.882 33.333 3.21 0.64 0.00 3.07
112 113 8.020861 ACATGTTTTATGTTCATGTCATTTGC 57.979 30.769 10.27 0.00 45.67 3.68
113 114 6.687653 TGTTTTATGTTCATGTCATTTGCG 57.312 33.333 10.27 0.00 0.00 4.85
114 115 6.212235 TGTTTTATGTTCATGTCATTTGCGT 58.788 32.000 10.27 0.00 0.00 5.24
115 116 6.143598 TGTTTTATGTTCATGTCATTTGCGTG 59.856 34.615 10.27 0.00 0.00 5.34
116 117 3.921119 ATGTTCATGTCATTTGCGTGT 57.079 38.095 0.00 0.00 0.00 4.49
117 118 3.266541 TGTTCATGTCATTTGCGTGTC 57.733 42.857 0.00 0.00 0.00 3.67
118 119 2.877786 TGTTCATGTCATTTGCGTGTCT 59.122 40.909 0.00 0.00 0.00 3.41
119 120 3.228749 GTTCATGTCATTTGCGTGTCTG 58.771 45.455 0.00 0.00 0.00 3.51
120 121 2.493035 TCATGTCATTTGCGTGTCTGT 58.507 42.857 0.00 0.00 0.00 3.41
121 122 2.223845 TCATGTCATTTGCGTGTCTGTG 59.776 45.455 0.00 0.00 0.00 3.66
122 123 1.662517 TGTCATTTGCGTGTCTGTGT 58.337 45.000 0.00 0.00 0.00 3.72
123 124 2.013400 TGTCATTTGCGTGTCTGTGTT 58.987 42.857 0.00 0.00 0.00 3.32
124 125 2.223226 TGTCATTTGCGTGTCTGTGTTG 60.223 45.455 0.00 0.00 0.00 3.33
125 126 2.031560 GTCATTTGCGTGTCTGTGTTGA 59.968 45.455 0.00 0.00 0.00 3.18
126 127 2.877786 TCATTTGCGTGTCTGTGTTGAT 59.122 40.909 0.00 0.00 0.00 2.57
127 128 2.753989 TTTGCGTGTCTGTGTTGATG 57.246 45.000 0.00 0.00 0.00 3.07
128 129 0.943673 TTGCGTGTCTGTGTTGATGG 59.056 50.000 0.00 0.00 0.00 3.51
129 130 0.105778 TGCGTGTCTGTGTTGATGGA 59.894 50.000 0.00 0.00 0.00 3.41
130 131 1.225855 GCGTGTCTGTGTTGATGGAA 58.774 50.000 0.00 0.00 0.00 3.53
131 132 1.069906 GCGTGTCTGTGTTGATGGAAC 60.070 52.381 0.00 0.00 34.84 3.62
132 133 1.531149 CGTGTCTGTGTTGATGGAACC 59.469 52.381 0.00 0.00 33.07 3.62
133 134 2.806745 CGTGTCTGTGTTGATGGAACCT 60.807 50.000 0.00 0.00 33.07 3.50
134 135 2.808543 GTGTCTGTGTTGATGGAACCTC 59.191 50.000 0.00 0.00 33.07 3.85
135 136 2.437651 TGTCTGTGTTGATGGAACCTCA 59.562 45.455 0.00 0.00 33.07 3.86
136 137 3.070018 GTCTGTGTTGATGGAACCTCAG 58.930 50.000 0.00 0.00 37.10 3.35
137 138 2.038952 TCTGTGTTGATGGAACCTCAGG 59.961 50.000 0.00 0.00 36.74 3.86
138 139 1.168714 GTGTTGATGGAACCTCAGGC 58.831 55.000 0.00 0.00 33.07 4.85
139 140 0.770499 TGTTGATGGAACCTCAGGCA 59.230 50.000 0.00 0.00 33.07 4.75
140 141 1.144708 TGTTGATGGAACCTCAGGCAA 59.855 47.619 0.00 0.00 33.07 4.52
141 142 2.225091 TGTTGATGGAACCTCAGGCAAT 60.225 45.455 0.00 0.00 33.07 3.56
142 143 2.827921 GTTGATGGAACCTCAGGCAATT 59.172 45.455 0.00 0.00 0.00 2.32
143 144 2.449464 TGATGGAACCTCAGGCAATTG 58.551 47.619 0.00 0.00 0.00 2.32
144 145 1.135721 GATGGAACCTCAGGCAATTGC 59.864 52.381 22.47 22.47 41.14 3.56
145 146 1.243342 TGGAACCTCAGGCAATTGCG 61.243 55.000 23.48 11.43 43.26 4.85
146 147 0.960364 GGAACCTCAGGCAATTGCGA 60.960 55.000 23.48 15.03 43.26 5.10
147 148 0.449388 GAACCTCAGGCAATTGCGAG 59.551 55.000 23.48 22.46 43.26 5.03
148 149 1.589716 AACCTCAGGCAATTGCGAGC 61.590 55.000 23.48 10.51 43.26 5.03
149 150 2.042259 CCTCAGGCAATTGCGAGCA 61.042 57.895 23.48 7.04 43.26 4.26
150 151 1.136147 CTCAGGCAATTGCGAGCAC 59.864 57.895 23.48 9.77 43.26 4.40
151 152 2.180017 CAGGCAATTGCGAGCACC 59.820 61.111 23.48 9.04 43.26 5.01
152 153 2.282391 AGGCAATTGCGAGCACCA 60.282 55.556 23.48 0.00 43.26 4.17
153 154 1.902918 AGGCAATTGCGAGCACCAA 60.903 52.632 23.48 0.00 43.26 3.67
154 155 1.216178 GGCAATTGCGAGCACCAAT 59.784 52.632 23.48 0.00 43.26 3.16
155 156 0.390209 GGCAATTGCGAGCACCAATT 60.390 50.000 23.48 4.14 42.02 2.32
156 157 1.135141 GGCAATTGCGAGCACCAATTA 60.135 47.619 23.48 0.00 40.00 1.40
157 158 2.605030 GCAATTGCGAGCACCAATTAA 58.395 42.857 15.87 0.00 40.00 1.40
158 159 2.992543 GCAATTGCGAGCACCAATTAAA 59.007 40.909 15.87 0.00 40.00 1.52
159 160 3.431572 GCAATTGCGAGCACCAATTAAAA 59.568 39.130 15.87 0.00 40.00 1.52
160 161 4.084118 GCAATTGCGAGCACCAATTAAAAA 60.084 37.500 15.87 0.00 40.00 1.94
161 162 5.610975 CAATTGCGAGCACCAATTAAAAAG 58.389 37.500 0.00 0.00 40.00 2.27
162 163 4.576216 TTGCGAGCACCAATTAAAAAGA 57.424 36.364 0.00 0.00 0.00 2.52
163 164 4.576216 TGCGAGCACCAATTAAAAAGAA 57.424 36.364 0.00 0.00 0.00 2.52
164 165 4.545610 TGCGAGCACCAATTAAAAAGAAG 58.454 39.130 0.00 0.00 0.00 2.85
165 166 3.364920 GCGAGCACCAATTAAAAAGAAGC 59.635 43.478 0.00 0.00 0.00 3.86
166 167 4.798574 CGAGCACCAATTAAAAAGAAGCT 58.201 39.130 0.00 0.00 0.00 3.74
167 168 5.222631 CGAGCACCAATTAAAAAGAAGCTT 58.777 37.500 0.00 0.00 0.00 3.74
168 169 5.691754 CGAGCACCAATTAAAAAGAAGCTTT 59.308 36.000 0.00 0.00 0.00 3.51
169 170 6.346040 CGAGCACCAATTAAAAAGAAGCTTTG 60.346 38.462 0.00 0.00 0.00 2.77
170 171 6.348498 AGCACCAATTAAAAAGAAGCTTTGT 58.652 32.000 0.00 0.00 0.00 2.83
171 172 6.258507 AGCACCAATTAAAAAGAAGCTTTGTG 59.741 34.615 0.00 0.00 0.00 3.33
172 173 6.257630 GCACCAATTAAAAAGAAGCTTTGTGA 59.742 34.615 0.00 0.00 0.00 3.58
173 174 7.621102 CACCAATTAAAAAGAAGCTTTGTGAC 58.379 34.615 0.00 0.00 0.00 3.67
174 175 6.475402 ACCAATTAAAAAGAAGCTTTGTGACG 59.525 34.615 0.00 0.00 0.00 4.35
175 176 6.074356 CCAATTAAAAAGAAGCTTTGTGACGG 60.074 38.462 0.00 0.00 0.00 4.79
176 177 5.821516 TTAAAAAGAAGCTTTGTGACGGA 57.178 34.783 0.00 0.00 0.00 4.69
177 178 3.692791 AAAAGAAGCTTTGTGACGGAC 57.307 42.857 0.00 0.00 0.00 4.79
178 179 2.622064 AAGAAGCTTTGTGACGGACT 57.378 45.000 0.00 0.00 0.00 3.85
179 180 1.871080 AGAAGCTTTGTGACGGACTG 58.129 50.000 0.00 0.00 0.00 3.51
180 181 0.868406 GAAGCTTTGTGACGGACTGG 59.132 55.000 0.00 0.00 0.00 4.00
181 182 0.468226 AAGCTTTGTGACGGACTGGA 59.532 50.000 0.00 0.00 0.00 3.86
182 183 0.468226 AGCTTTGTGACGGACTGGAA 59.532 50.000 0.00 0.00 0.00 3.53
183 184 1.072331 AGCTTTGTGACGGACTGGAAT 59.928 47.619 0.00 0.00 0.00 3.01
184 185 1.197721 GCTTTGTGACGGACTGGAATG 59.802 52.381 0.00 0.00 0.00 2.67
185 186 1.806542 CTTTGTGACGGACTGGAATGG 59.193 52.381 0.00 0.00 0.00 3.16
186 187 0.762418 TTGTGACGGACTGGAATGGT 59.238 50.000 0.00 0.00 0.00 3.55
187 188 1.634960 TGTGACGGACTGGAATGGTA 58.365 50.000 0.00 0.00 0.00 3.25
188 189 1.274167 TGTGACGGACTGGAATGGTAC 59.726 52.381 0.00 0.00 0.00 3.34
189 190 1.549170 GTGACGGACTGGAATGGTACT 59.451 52.381 0.00 0.00 0.00 2.73
190 191 2.028385 GTGACGGACTGGAATGGTACTT 60.028 50.000 0.00 0.00 0.00 2.24
191 192 2.635915 TGACGGACTGGAATGGTACTTT 59.364 45.455 0.00 0.00 0.00 2.66
192 193 3.833650 TGACGGACTGGAATGGTACTTTA 59.166 43.478 0.00 0.00 0.00 1.85
193 194 4.283978 TGACGGACTGGAATGGTACTTTAA 59.716 41.667 0.00 0.00 0.00 1.52
194 195 4.828829 ACGGACTGGAATGGTACTTTAAG 58.171 43.478 0.00 0.00 0.00 1.85
195 196 4.529377 ACGGACTGGAATGGTACTTTAAGA 59.471 41.667 0.00 0.00 0.00 2.10
196 197 5.189145 ACGGACTGGAATGGTACTTTAAGAT 59.811 40.000 0.00 0.00 0.00 2.40
197 198 6.113411 CGGACTGGAATGGTACTTTAAGATT 58.887 40.000 0.00 0.00 0.00 2.40
198 199 7.093201 ACGGACTGGAATGGTACTTTAAGATTA 60.093 37.037 0.00 0.00 0.00 1.75
199 200 7.931948 CGGACTGGAATGGTACTTTAAGATTAT 59.068 37.037 0.00 0.00 0.00 1.28
233 234 7.839680 AAAAGTCAGGAAATTCAGGTATTGT 57.160 32.000 0.00 0.00 0.00 2.71
234 235 7.839680 AAAGTCAGGAAATTCAGGTATTGTT 57.160 32.000 0.00 0.00 0.00 2.83
235 236 7.839680 AAGTCAGGAAATTCAGGTATTGTTT 57.160 32.000 0.00 0.00 0.00 2.83
236 237 7.839680 AGTCAGGAAATTCAGGTATTGTTTT 57.160 32.000 0.00 0.00 0.00 2.43
237 238 7.886338 AGTCAGGAAATTCAGGTATTGTTTTC 58.114 34.615 0.00 0.00 33.34 2.29
238 239 6.801862 GTCAGGAAATTCAGGTATTGTTTTCG 59.198 38.462 0.00 0.00 34.12 3.46
239 240 6.072175 TCAGGAAATTCAGGTATTGTTTTCGG 60.072 38.462 0.00 0.00 34.12 4.30
240 241 5.185056 AGGAAATTCAGGTATTGTTTTCGGG 59.815 40.000 0.00 0.00 34.12 5.14
241 242 5.184287 GGAAATTCAGGTATTGTTTTCGGGA 59.816 40.000 0.00 0.00 34.12 5.14
242 243 6.294843 GGAAATTCAGGTATTGTTTTCGGGAA 60.295 38.462 0.00 0.00 34.12 3.97
243 244 5.638596 ATTCAGGTATTGTTTTCGGGAAC 57.361 39.130 0.00 0.00 0.00 3.62
244 245 4.088056 TCAGGTATTGTTTTCGGGAACA 57.912 40.909 1.20 1.20 37.73 3.18
245 246 4.658063 TCAGGTATTGTTTTCGGGAACAT 58.342 39.130 5.56 0.94 39.12 2.71
246 247 4.457603 TCAGGTATTGTTTTCGGGAACATG 59.542 41.667 5.56 0.00 39.12 3.21
247 248 4.217550 CAGGTATTGTTTTCGGGAACATGT 59.782 41.667 0.00 0.00 39.12 3.21
248 249 4.830600 AGGTATTGTTTTCGGGAACATGTT 59.169 37.500 11.78 11.78 39.12 2.71
249 250 5.303333 AGGTATTGTTTTCGGGAACATGTTT 59.697 36.000 13.36 0.00 39.12 2.83
250 251 5.986741 GGTATTGTTTTCGGGAACATGTTTT 59.013 36.000 13.36 0.00 39.12 2.43
251 252 7.014422 AGGTATTGTTTTCGGGAACATGTTTTA 59.986 33.333 13.36 0.00 39.12 1.52
252 253 7.815549 GGTATTGTTTTCGGGAACATGTTTTAT 59.184 33.333 13.36 0.00 39.12 1.40
253 254 7.650834 ATTGTTTTCGGGAACATGTTTTATG 57.349 32.000 13.36 3.80 39.12 1.90
254 255 6.150396 TGTTTTCGGGAACATGTTTTATGT 57.850 33.333 13.36 0.00 34.77 2.29
255 256 6.574350 TGTTTTCGGGAACATGTTTTATGTT 58.426 32.000 13.36 5.07 44.08 2.71
267 268 8.020861 ACATGTTTTATGTTCATGTCATTTGC 57.979 30.769 10.27 0.00 45.67 3.68
276 277 2.877786 TCATGTCATTTGCGTCTGTGTT 59.122 40.909 0.00 0.00 0.00 3.32
277 278 2.753989 TGTCATTTGCGTCTGTGTTG 57.246 45.000 0.00 0.00 0.00 3.33
288 289 3.130633 CGTCTGTGTTGATGGAACTTCA 58.869 45.455 0.00 0.00 35.37 3.02
297 298 2.253603 GATGGAACTTCACGCAATTGC 58.746 47.619 20.76 20.76 37.78 3.56
307 308 4.895854 GCAATTGCGAGCACCATT 57.104 50.000 15.87 0.00 0.00 3.16
309 310 2.276472 GCAATTGCGAGCACCATTTA 57.724 45.000 15.87 0.00 0.00 1.40
310 311 2.605030 GCAATTGCGAGCACCATTTAA 58.395 42.857 15.87 0.00 0.00 1.52
311 312 2.599973 GCAATTGCGAGCACCATTTAAG 59.400 45.455 15.87 0.00 0.00 1.85
312 313 3.673052 GCAATTGCGAGCACCATTTAAGA 60.673 43.478 15.87 0.00 0.00 2.10
313 314 4.100529 CAATTGCGAGCACCATTTAAGAG 58.899 43.478 0.00 0.00 0.00 2.85
315 316 2.778299 TGCGAGCACCATTTAAGAGTT 58.222 42.857 0.00 0.00 0.00 3.01
317 318 4.320023 TGCGAGCACCATTTAAGAGTTTA 58.680 39.130 0.00 0.00 0.00 2.01
318 319 4.757657 TGCGAGCACCATTTAAGAGTTTAA 59.242 37.500 0.00 0.00 0.00 1.52
319 320 5.106712 TGCGAGCACCATTTAAGAGTTTAAG 60.107 40.000 0.00 0.00 30.84 1.85
322 323 6.402226 CGAGCACCATTTAAGAGTTTAAGTCC 60.402 42.308 0.00 0.00 30.84 3.85
327 403 9.152595 CACCATTTAAGAGTTTAAGTCCTAGAC 57.847 37.037 0.00 0.00 30.84 2.59
351 427 3.155093 ACATTGATGCTCGCATTTTCC 57.845 42.857 5.79 0.00 36.70 3.13
362 438 4.207841 GCTCGCATTTTCCTGCATTTATTC 59.792 41.667 0.00 0.00 42.40 1.75
363 439 5.581126 TCGCATTTTCCTGCATTTATTCT 57.419 34.783 0.00 0.00 42.40 2.40
368 444 6.462067 GCATTTTCCTGCATTTATTCTAGGCT 60.462 38.462 0.00 0.00 41.87 4.58
372 448 5.133221 TCCTGCATTTATTCTAGGCTTTCC 58.867 41.667 0.00 0.00 0.00 3.13
382 458 1.895020 TAGGCTTTCCGGCGATGTGT 61.895 55.000 9.30 0.00 44.22 3.72
383 459 2.480555 GCTTTCCGGCGATGTGTG 59.519 61.111 9.30 0.00 0.00 3.82
386 462 0.165944 CTTTCCGGCGATGTGTGTTC 59.834 55.000 9.30 0.00 0.00 3.18
399 475 1.625818 GTGTGTTCAGTGGGAGGAGAT 59.374 52.381 0.00 0.00 0.00 2.75
403 479 2.303022 TGTTCAGTGGGAGGAGATGTTC 59.697 50.000 0.00 0.00 0.00 3.18
406 482 1.135915 CAGTGGGAGGAGATGTTCTCG 59.864 57.143 0.00 0.00 44.28 4.04
408 484 1.134965 GTGGGAGGAGATGTTCTCGTG 60.135 57.143 4.59 0.00 44.28 4.35
410 486 1.475403 GGAGGAGATGTTCTCGTGGA 58.525 55.000 4.59 0.00 44.28 4.02
415 491 3.018149 GGAGATGTTCTCGTGGACTACT 58.982 50.000 0.00 0.00 44.28 2.57
419 495 5.498393 AGATGTTCTCGTGGACTACTAAGA 58.502 41.667 0.00 0.00 0.00 2.10
420 496 6.123651 AGATGTTCTCGTGGACTACTAAGAT 58.876 40.000 0.00 0.00 0.00 2.40
423 499 5.123502 TGTTCTCGTGGACTACTAAGATGTC 59.876 44.000 0.00 0.00 0.00 3.06
428 504 4.395231 CGTGGACTACTAAGATGTCTGTGA 59.605 45.833 0.00 0.00 0.00 3.58
431 507 4.634883 GGACTACTAAGATGTCTGTGACGA 59.365 45.833 0.00 0.00 34.95 4.20
441 517 6.223852 AGATGTCTGTGACGACTTTGTAATT 58.776 36.000 8.51 0.00 34.95 1.40
451 527 8.230486 GTGACGACTTTGTAATTTCAAGATGAT 58.770 33.333 0.00 0.00 0.00 2.45
456 532 7.092716 ACTTTGTAATTTCAAGATGATGTGCC 58.907 34.615 0.00 0.00 0.00 5.01
457 533 6.587206 TTGTAATTTCAAGATGATGTGCCA 57.413 33.333 0.00 0.00 0.00 4.92
459 535 5.945191 TGTAATTTCAAGATGATGTGCCAGA 59.055 36.000 0.00 0.00 0.00 3.86
478 554 0.108424 ATCAGTCTGTCGAAGCTGCC 60.108 55.000 0.00 0.00 32.96 4.85
484 560 0.531532 CTGTCGAAGCTGCCCATAGG 60.532 60.000 0.00 0.00 0.00 2.57
497 573 0.902531 CCATAGGGGTAGGGTATGCG 59.097 60.000 0.00 0.00 0.00 4.73
498 574 1.640917 CATAGGGGTAGGGTATGCGT 58.359 55.000 0.00 0.00 0.00 5.24
499 575 1.549170 CATAGGGGTAGGGTATGCGTC 59.451 57.143 0.00 0.00 0.00 5.19
500 576 0.178953 TAGGGGTAGGGTATGCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
501 577 2.732658 GGGTAGGGTATGCGTCCG 59.267 66.667 0.00 0.00 0.00 4.79
511 587 2.292569 GGTATGCGTCCGTTCATAGAGA 59.707 50.000 0.00 0.00 0.00 3.10
518 594 3.065510 CGTCCGTTCATAGAGATGAGTGT 59.934 47.826 0.00 0.00 43.03 3.55
522 598 5.828328 TCCGTTCATAGAGATGAGTGTATGT 59.172 40.000 0.00 0.00 43.03 2.29
523 599 5.917447 CCGTTCATAGAGATGAGTGTATGTG 59.083 44.000 0.00 0.00 43.03 3.21
524 600 6.238759 CCGTTCATAGAGATGAGTGTATGTGA 60.239 42.308 0.00 0.00 43.03 3.58
525 601 6.855403 CGTTCATAGAGATGAGTGTATGTGAG 59.145 42.308 0.00 0.00 43.03 3.51
526 602 6.324561 TCATAGAGATGAGTGTATGTGAGC 57.675 41.667 0.00 0.00 37.15 4.26
528 604 2.360483 AGAGATGAGTGTATGTGAGCGG 59.640 50.000 0.00 0.00 0.00 5.52
529 605 1.202463 AGATGAGTGTATGTGAGCGGC 60.202 52.381 0.00 0.00 0.00 6.53
531 607 0.608130 TGAGTGTATGTGAGCGGCTT 59.392 50.000 2.97 0.00 0.00 4.35
532 608 1.001974 TGAGTGTATGTGAGCGGCTTT 59.998 47.619 2.97 0.00 0.00 3.51
535 611 2.009774 GTGTATGTGAGCGGCTTTGAT 58.990 47.619 2.97 0.00 0.00 2.57
536 612 2.420022 GTGTATGTGAGCGGCTTTGATT 59.580 45.455 2.97 0.00 0.00 2.57
538 614 4.273480 GTGTATGTGAGCGGCTTTGATTAT 59.727 41.667 2.97 0.00 0.00 1.28
539 615 4.881273 TGTATGTGAGCGGCTTTGATTATT 59.119 37.500 2.97 0.00 0.00 1.40
540 616 3.763097 TGTGAGCGGCTTTGATTATTG 57.237 42.857 2.97 0.00 0.00 1.90
543 619 3.375299 GTGAGCGGCTTTGATTATTGTCT 59.625 43.478 2.97 0.00 0.00 3.41
544 620 4.009675 TGAGCGGCTTTGATTATTGTCTT 58.990 39.130 2.97 0.00 0.00 3.01
547 623 5.783111 AGCGGCTTTGATTATTGTCTTTTT 58.217 33.333 0.00 0.00 0.00 1.94
580 660 1.141455 ACTAGGACTACCTCGCTCTCC 59.859 57.143 0.00 0.00 46.43 3.71
583 663 1.730451 GGACTACCTCGCTCTCCTGC 61.730 65.000 0.00 0.00 0.00 4.85
592 672 1.079819 GCTCTCCTGCGTGCAACTA 60.080 57.895 0.00 0.00 31.75 2.24
598 678 0.940126 CCTGCGTGCAACTATGGATC 59.060 55.000 0.00 0.00 31.75 3.36
605 685 0.535102 GCAACTATGGATCACCGGGG 60.535 60.000 6.32 0.00 39.42 5.73
722 826 6.041409 TCACAAAGAAAATATCCACTTGCCAA 59.959 34.615 0.00 0.00 0.00 4.52
731 835 1.151668 CCACTTGCCAAGACGAAGAG 58.848 55.000 12.25 0.00 0.00 2.85
798 912 4.231439 CCACCTTGGTTAATTAACAACGC 58.769 43.478 25.59 11.72 37.92 4.84
872 990 6.222389 CAAATCAAAGCTTCCCATACACAAA 58.778 36.000 0.00 0.00 0.00 2.83
876 994 7.716799 TCAAAGCTTCCCATACACAAAATAT 57.283 32.000 0.00 0.00 0.00 1.28
877 995 8.815565 TCAAAGCTTCCCATACACAAAATATA 57.184 30.769 0.00 0.00 0.00 0.86
951 1073 2.740055 GAGTGGAGTGGCGCACTG 60.740 66.667 10.83 0.00 45.44 3.66
952 1074 4.320456 AGTGGAGTGGCGCACTGG 62.320 66.667 10.83 0.00 45.44 4.00
978 1100 2.875933 TCTTTTCCGCCTATAAATGCCG 59.124 45.455 0.00 0.00 0.00 5.69
1080 1202 1.200092 AGCCTTCTCAGCTGCCTTCT 61.200 55.000 9.47 0.00 39.69 2.85
1088 1210 0.107752 CAGCTGCCTTCTTCCTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
1089 1211 1.223211 GCTGCCTTCTTCCTCCTCC 59.777 63.158 0.00 0.00 0.00 4.30
1193 1317 2.358737 GTGACAAGCTCCGGTGGG 60.359 66.667 0.00 0.00 0.00 4.61
1485 1619 2.186826 GTGGCCGTATGGACCATGC 61.187 63.158 17.73 14.89 46.01 4.06
1487 1621 1.228245 GGCCGTATGGACCATGCAT 60.228 57.895 20.83 0.00 37.27 3.96
1488 1622 1.518056 GGCCGTATGGACCATGCATG 61.518 60.000 20.19 20.19 37.27 4.06
1489 1623 0.534877 GCCGTATGGACCATGCATGA 60.535 55.000 28.31 8.35 37.49 3.07
1490 1624 1.965935 CCGTATGGACCATGCATGAA 58.034 50.000 28.31 10.69 37.49 2.57
1491 1625 1.603802 CCGTATGGACCATGCATGAAC 59.396 52.381 28.31 19.14 37.49 3.18
1492 1626 2.564771 CGTATGGACCATGCATGAACT 58.435 47.619 28.31 9.65 29.08 3.01
1493 1627 2.288729 CGTATGGACCATGCATGAACTG 59.711 50.000 28.31 13.38 29.08 3.16
1494 1628 2.812836 ATGGACCATGCATGAACTGA 57.187 45.000 28.31 7.95 0.00 3.41
1523 1657 4.074970 ACATGAACTCATCAAGGACCAAC 58.925 43.478 0.00 0.00 42.54 3.77
1531 1665 5.535030 ACTCATCAAGGACCAACTAAAAACC 59.465 40.000 0.00 0.00 0.00 3.27
1539 1673 3.999001 GACCAACTAAAAACCGGGACTAG 59.001 47.826 6.32 3.44 0.00 2.57
1540 1674 3.647590 ACCAACTAAAAACCGGGACTAGA 59.352 43.478 6.32 0.00 0.00 2.43
1541 1675 4.287845 ACCAACTAAAAACCGGGACTAGAT 59.712 41.667 6.32 0.00 0.00 1.98
1542 1676 4.874396 CCAACTAAAAACCGGGACTAGATC 59.126 45.833 6.32 0.00 0.00 2.75
1574 1711 3.144506 AGAAGATGTGGTGCTTGAGTTG 58.855 45.455 0.00 0.00 0.00 3.16
1635 1777 2.413765 GGGAGATCTCGCCGTGAC 59.586 66.667 25.34 6.45 36.62 3.67
1636 1778 2.024871 GGAGATCTCGCCGTGACG 59.975 66.667 16.46 0.00 0.00 4.35
1676 1818 1.754234 GGCCTATGGGTGTTGCTGG 60.754 63.158 0.00 0.00 34.45 4.85
1678 1820 1.754234 CCTATGGGTGTTGCTGGCC 60.754 63.158 0.00 0.00 0.00 5.36
1679 1821 1.754234 CTATGGGTGTTGCTGGCCC 60.754 63.158 0.00 0.00 42.64 5.80
1680 1822 2.215451 CTATGGGTGTTGCTGGCCCT 62.215 60.000 0.00 0.00 42.77 5.19
1681 1823 2.497792 TATGGGTGTTGCTGGCCCTG 62.498 60.000 0.00 0.00 42.77 4.45
1699 1841 2.260869 GGGTTGAAGCTGCGCAAGA 61.261 57.895 13.05 0.00 43.02 3.02
1700 1842 1.208614 GGTTGAAGCTGCGCAAGAG 59.791 57.895 13.05 0.00 43.02 2.85
1701 1843 1.441682 GTTGAAGCTGCGCAAGAGC 60.442 57.895 13.05 12.35 39.66 4.09
1807 1953 6.603599 TGTGTGTATGAGACTATGAGCTAGTT 59.396 38.462 0.00 0.00 40.88 2.24
1851 1997 0.984432 TGGCATGGCATCTCTCTCCA 60.984 55.000 19.43 0.00 0.00 3.86
1858 2004 3.173151 TGGCATCTCTCTCCAGTTGTTA 58.827 45.455 0.00 0.00 0.00 2.41
1859 2005 3.582647 TGGCATCTCTCTCCAGTTGTTAA 59.417 43.478 0.00 0.00 0.00 2.01
1861 2007 4.813697 GGCATCTCTCTCCAGTTGTTAATC 59.186 45.833 0.00 0.00 0.00 1.75
1862 2008 5.396213 GGCATCTCTCTCCAGTTGTTAATCT 60.396 44.000 0.00 0.00 0.00 2.40
1863 2009 6.112058 GCATCTCTCTCCAGTTGTTAATCTT 58.888 40.000 0.00 0.00 0.00 2.40
1864 2010 6.036953 GCATCTCTCTCCAGTTGTTAATCTTG 59.963 42.308 0.00 0.00 0.00 3.02
1866 2012 4.579869 TCTCTCCAGTTGTTAATCTTGCC 58.420 43.478 0.00 0.00 0.00 4.52
1867 2013 3.686016 TCTCCAGTTGTTAATCTTGCCC 58.314 45.455 0.00 0.00 0.00 5.36
1868 2014 2.755103 CTCCAGTTGTTAATCTTGCCCC 59.245 50.000 0.00 0.00 0.00 5.80
1869 2015 2.109128 TCCAGTTGTTAATCTTGCCCCA 59.891 45.455 0.00 0.00 0.00 4.96
1871 2017 3.157087 CAGTTGTTAATCTTGCCCCAGT 58.843 45.455 0.00 0.00 0.00 4.00
1873 2019 3.573967 AGTTGTTAATCTTGCCCCAGTTG 59.426 43.478 0.00 0.00 0.00 3.16
1874 2020 2.524306 TGTTAATCTTGCCCCAGTTGG 58.476 47.619 0.00 0.00 0.00 3.77
1875 2021 2.158385 TGTTAATCTTGCCCCAGTTGGT 60.158 45.455 0.00 0.00 0.00 3.67
1902 2051 2.224233 TGCATCCAAAACCATGGTGTTG 60.224 45.455 33.02 33.02 41.63 3.33
1916 2065 5.535783 CCATGGTGTTGATTCCTGCAATATA 59.464 40.000 2.57 0.00 0.00 0.86
1917 2066 6.209986 CCATGGTGTTGATTCCTGCAATATAT 59.790 38.462 2.57 0.00 0.00 0.86
1918 2067 7.394077 CCATGGTGTTGATTCCTGCAATATATA 59.606 37.037 2.57 0.00 0.00 0.86
1919 2068 8.963725 CATGGTGTTGATTCCTGCAATATATAT 58.036 33.333 0.00 0.00 0.00 0.86
1934 2083 6.036517 GCAATATATATGCAGAGGAAGAACCG 59.963 42.308 12.27 0.00 43.29 4.44
1959 2108 5.335191 GCCATGGTGCTTAATTCTAGTATGC 60.335 44.000 14.67 0.00 0.00 3.14
1960 2109 5.182001 CCATGGTGCTTAATTCTAGTATGCC 59.818 44.000 2.57 0.00 0.00 4.40
1961 2110 4.377021 TGGTGCTTAATTCTAGTATGCCG 58.623 43.478 0.00 0.00 0.00 5.69
1962 2111 4.141801 TGGTGCTTAATTCTAGTATGCCGT 60.142 41.667 0.00 0.00 0.00 5.68
1963 2112 4.211374 GGTGCTTAATTCTAGTATGCCGTG 59.789 45.833 0.00 0.00 0.00 4.94
1964 2113 4.211374 GTGCTTAATTCTAGTATGCCGTGG 59.789 45.833 0.00 0.00 0.00 4.94
1965 2114 4.141801 TGCTTAATTCTAGTATGCCGTGGT 60.142 41.667 0.00 0.00 0.00 4.16
1966 2115 4.211374 GCTTAATTCTAGTATGCCGTGGTG 59.789 45.833 0.00 0.00 0.00 4.17
1967 2116 2.240493 ATTCTAGTATGCCGTGGTGC 57.760 50.000 0.00 0.00 0.00 5.01
1968 2117 1.191535 TTCTAGTATGCCGTGGTGCT 58.808 50.000 0.00 0.00 0.00 4.40
1969 2118 2.061509 TCTAGTATGCCGTGGTGCTA 57.938 50.000 0.00 0.00 0.00 3.49
1970 2119 2.380941 TCTAGTATGCCGTGGTGCTAA 58.619 47.619 0.00 0.00 0.00 3.09
1971 2120 2.963101 TCTAGTATGCCGTGGTGCTAAT 59.037 45.455 0.00 0.00 0.00 1.73
1972 2121 4.146564 TCTAGTATGCCGTGGTGCTAATA 58.853 43.478 0.00 0.00 0.00 0.98
1973 2122 3.830744 AGTATGCCGTGGTGCTAATAA 57.169 42.857 0.00 0.00 0.00 1.40
1974 2123 3.728845 AGTATGCCGTGGTGCTAATAAG 58.271 45.455 0.00 0.00 0.00 1.73
1975 2124 2.710096 ATGCCGTGGTGCTAATAAGT 57.290 45.000 0.00 0.00 0.00 2.24
1976 2125 2.483014 TGCCGTGGTGCTAATAAGTT 57.517 45.000 0.00 0.00 0.00 2.66
2004 2171 5.665360 TGGTGTGGACTATGGAATGATCTTA 59.335 40.000 0.00 0.00 0.00 2.10
2010 2177 9.832445 GTGGACTATGGAATGATCTTACTTTAA 57.168 33.333 0.00 0.00 0.00 1.52
2031 2199 5.990120 AATTCTTGTCCTTTTGATCTGGG 57.010 39.130 0.00 0.00 0.00 4.45
2073 2241 1.839994 TGGATCCTGGTCATGGAAGAC 59.160 52.381 14.23 0.00 37.13 3.01
2075 2243 2.158842 GGATCCTGGTCATGGAAGACAG 60.159 54.545 3.84 0.00 40.29 3.51
2077 2245 1.902508 TCCTGGTCATGGAAGACAGAC 59.097 52.381 0.00 0.00 40.29 3.51
2078 2246 1.065854 CCTGGTCATGGAAGACAGACC 60.066 57.143 0.00 0.00 42.65 3.85
2082 2267 1.902508 GTCATGGAAGACAGACCAGGA 59.097 52.381 0.00 0.00 43.14 3.86
2118 2306 1.735386 CTGCAAGGTCCAGATCACAG 58.265 55.000 0.00 0.00 32.03 3.66
2127 2316 0.829333 CCAGATCACAGGAGAGGGTG 59.171 60.000 0.00 0.00 36.36 4.61
2182 2392 3.490419 GCATGAGCATCTTTTCCATGTCC 60.490 47.826 0.00 0.00 41.58 4.02
2217 2427 0.954452 GTTGTTGGAGACCAGCCTTG 59.046 55.000 0.00 0.00 33.72 3.61
2244 2454 4.022935 TGTGAAACATGCTCATCAAAGACC 60.023 41.667 0.00 0.00 45.67 3.85
2256 2466 5.434408 TCATCAAAGACCAATGATCTGAGG 58.566 41.667 0.00 0.00 34.12 3.86
2268 2478 0.842635 ATCTGAGGAGTTCATGGCCC 59.157 55.000 0.00 0.00 34.68 5.80
2282 2492 0.923729 TGGCCCCTCTCTCTCTCTCT 60.924 60.000 0.00 0.00 0.00 3.10
2283 2493 0.178990 GGCCCCTCTCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
2284 2494 0.846693 GCCCCTCTCTCTCTCTCTCT 59.153 60.000 0.00 0.00 0.00 3.10
2285 2495 1.202818 GCCCCTCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
2286 2496 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
2287 2497 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
2288 2498 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
2289 2499 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
2379 2589 6.234177 AGACTTTGAATTCGATTCCTCTGTT 58.766 36.000 0.04 0.00 38.50 3.16
2380 2590 6.148480 AGACTTTGAATTCGATTCCTCTGTTG 59.852 38.462 0.04 0.00 38.50 3.33
2453 2663 2.328099 GCTCCCACTTGCAAGGACG 61.328 63.158 29.18 16.90 0.00 4.79
2455 2665 2.111999 CTCCCACTTGCAAGGACGGA 62.112 60.000 29.18 25.33 0.00 4.69
2463 2673 1.527380 GCAAGGACGGACCAAACCA 60.527 57.895 0.00 0.00 42.04 3.67
2465 2675 0.107831 CAAGGACGGACCAAACCAGA 59.892 55.000 0.00 0.00 42.04 3.86
2496 2706 0.111253 ACCTTGCTCCCTTTCCACAG 59.889 55.000 0.00 0.00 0.00 3.66
2596 2811 5.766670 ACAGATATAACCAAGGTGCATGATG 59.233 40.000 0.00 0.00 0.00 3.07
2608 2823 3.322828 GGTGCATGATGGGCTTTGATTAT 59.677 43.478 0.00 0.00 0.00 1.28
2679 2894 1.903183 AGAAACTGGACCTGTAGGAGC 59.097 52.381 4.64 0.00 38.94 4.70
2683 2898 1.207791 CTGGACCTGTAGGAGCCATT 58.792 55.000 14.39 0.00 40.40 3.16
2689 2904 2.093447 ACCTGTAGGAGCCATTCTTTCG 60.093 50.000 4.64 0.00 38.94 3.46
2691 2906 3.190874 CTGTAGGAGCCATTCTTTCGTC 58.809 50.000 0.00 0.00 0.00 4.20
2709 2924 2.042464 GTCCCAGATGTCTCCTATGCA 58.958 52.381 0.00 0.00 0.00 3.96
2728 2943 1.352622 ACCCTCACAAGGCAGAACCA 61.353 55.000 0.00 0.00 41.85 3.67
2740 2955 2.433604 GGCAGAACCAGATCAGAGATCA 59.566 50.000 9.43 0.00 38.86 2.92
2741 2956 3.493002 GGCAGAACCAGATCAGAGATCAG 60.493 52.174 9.43 1.61 38.86 2.90
2742 2957 3.719924 CAGAACCAGATCAGAGATCAGC 58.280 50.000 9.43 0.00 0.00 4.26
2743 2958 3.385433 CAGAACCAGATCAGAGATCAGCT 59.615 47.826 9.43 0.00 0.00 4.24
2744 2959 3.385433 AGAACCAGATCAGAGATCAGCTG 59.615 47.826 7.63 7.63 34.71 4.24
2745 2960 3.029483 ACCAGATCAGAGATCAGCTGA 57.971 47.619 20.79 20.79 45.52 4.26
2754 2969 6.728089 TCAGAGATCAGCTGATTATTCACT 57.272 37.500 29.26 19.98 37.46 3.41
2755 2970 7.830099 TCAGAGATCAGCTGATTATTCACTA 57.170 36.000 29.26 13.49 37.46 2.74
2756 2971 8.419922 TCAGAGATCAGCTGATTATTCACTAT 57.580 34.615 29.26 15.18 37.46 2.12
2757 2972 8.868103 TCAGAGATCAGCTGATTATTCACTATT 58.132 33.333 29.26 10.22 37.46 1.73
2758 2973 9.491675 CAGAGATCAGCTGATTATTCACTATTT 57.508 33.333 29.26 3.84 35.39 1.40
2761 2976 9.064706 AGATCAGCTGATTATTCACTATTTTGG 57.935 33.333 29.26 0.00 34.37 3.28
2762 2977 8.757982 ATCAGCTGATTATTCACTATTTTGGT 57.242 30.769 23.75 0.00 0.00 3.67
2763 2978 8.579850 TCAGCTGATTATTCACTATTTTGGTT 57.420 30.769 13.74 0.00 0.00 3.67
2764 2979 8.461222 TCAGCTGATTATTCACTATTTTGGTTG 58.539 33.333 13.74 0.00 0.00 3.77
2765 2980 8.246180 CAGCTGATTATTCACTATTTTGGTTGT 58.754 33.333 8.42 0.00 0.00 3.32
2766 2981 9.461312 AGCTGATTATTCACTATTTTGGTTGTA 57.539 29.630 0.00 0.00 0.00 2.41
2767 2982 9.722056 GCTGATTATTCACTATTTTGGTTGTAG 57.278 33.333 0.00 0.00 0.00 2.74
2769 2984 9.747898 TGATTATTCACTATTTTGGTTGTAGGT 57.252 29.630 0.00 0.00 0.00 3.08
2773 2988 7.883391 TTCACTATTTTGGTTGTAGGTTTGA 57.117 32.000 0.00 0.00 0.00 2.69
2774 2989 7.504924 TCACTATTTTGGTTGTAGGTTTGAG 57.495 36.000 0.00 0.00 0.00 3.02
2775 2990 6.016610 TCACTATTTTGGTTGTAGGTTTGAGC 60.017 38.462 0.00 0.00 0.00 4.26
2776 2991 5.830991 ACTATTTTGGTTGTAGGTTTGAGCA 59.169 36.000 0.00 0.00 0.00 4.26
2777 2992 4.379339 TTTTGGTTGTAGGTTTGAGCAC 57.621 40.909 0.00 0.00 0.00 4.40
2778 2993 2.719531 TGGTTGTAGGTTTGAGCACA 57.280 45.000 0.00 0.00 0.00 4.57
2779 2994 2.294074 TGGTTGTAGGTTTGAGCACAC 58.706 47.619 0.00 0.00 0.00 3.82
2780 2995 2.294074 GGTTGTAGGTTTGAGCACACA 58.706 47.619 0.00 0.00 0.00 3.72
2781 2996 2.884639 GGTTGTAGGTTTGAGCACACAT 59.115 45.455 0.00 0.00 0.00 3.21
2782 2997 3.317993 GGTTGTAGGTTTGAGCACACATT 59.682 43.478 0.00 0.00 0.00 2.71
2783 2998 4.202111 GGTTGTAGGTTTGAGCACACATTT 60.202 41.667 0.00 0.00 0.00 2.32
2784 2999 5.348164 GTTGTAGGTTTGAGCACACATTTT 58.652 37.500 0.00 0.00 0.00 1.82
2785 3000 5.590530 TGTAGGTTTGAGCACACATTTTT 57.409 34.783 0.00 0.00 0.00 1.94
2806 3021 1.772836 TTTACCCTCCTCCGACTAGC 58.227 55.000 0.00 0.00 0.00 3.42
2807 3022 0.106318 TTACCCTCCTCCGACTAGCC 60.106 60.000 0.00 0.00 0.00 3.93
2808 3023 2.335092 TACCCTCCTCCGACTAGCCG 62.335 65.000 0.00 0.00 0.00 5.52
2809 3024 3.597728 CCTCCTCCGACTAGCCGC 61.598 72.222 0.00 0.00 0.00 6.53
2810 3025 2.517402 CTCCTCCGACTAGCCGCT 60.517 66.667 0.00 0.00 0.00 5.52
2811 3026 2.044252 TCCTCCGACTAGCCGCTT 60.044 61.111 0.00 0.00 0.00 4.68
2812 3027 2.065906 CTCCTCCGACTAGCCGCTTC 62.066 65.000 0.00 0.00 0.00 3.86
2813 3028 2.024871 CTCCGACTAGCCGCTTCG 59.975 66.667 0.00 2.44 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.064820 GTCCGTCACAAAGCTTCTTTTCA 59.935 43.478 0.00 0.00 0.00 2.69
1 2 3.064820 TGTCCGTCACAAAGCTTCTTTTC 59.935 43.478 0.00 0.00 29.30 2.29
2 3 3.013921 TGTCCGTCACAAAGCTTCTTTT 58.986 40.909 0.00 0.00 29.30 2.27
3 4 2.614057 CTGTCCGTCACAAAGCTTCTTT 59.386 45.455 0.00 0.00 33.31 2.52
4 5 2.213499 CTGTCCGTCACAAAGCTTCTT 58.787 47.619 0.00 0.00 33.31 2.52
5 6 1.541233 CCTGTCCGTCACAAAGCTTCT 60.541 52.381 0.00 0.00 33.31 2.85
6 7 0.868406 CCTGTCCGTCACAAAGCTTC 59.132 55.000 0.00 0.00 33.31 3.86
7 8 0.468226 TCCTGTCCGTCACAAAGCTT 59.532 50.000 0.00 0.00 33.31 3.74
8 9 0.468226 TTCCTGTCCGTCACAAAGCT 59.532 50.000 0.00 0.00 33.31 3.74
9 10 1.264288 CTTTCCTGTCCGTCACAAAGC 59.736 52.381 0.00 0.00 33.31 3.51
10 11 1.873591 CCTTTCCTGTCCGTCACAAAG 59.126 52.381 0.00 0.00 33.31 2.77
11 12 1.476110 CCCTTTCCTGTCCGTCACAAA 60.476 52.381 0.00 0.00 33.31 2.83
12 13 0.107831 CCCTTTCCTGTCCGTCACAA 59.892 55.000 0.00 0.00 33.31 3.33
13 14 0.761323 TCCCTTTCCTGTCCGTCACA 60.761 55.000 0.00 0.00 0.00 3.58
14 15 0.320508 GTCCCTTTCCTGTCCGTCAC 60.321 60.000 0.00 0.00 0.00 3.67
15 16 0.471211 AGTCCCTTTCCTGTCCGTCA 60.471 55.000 0.00 0.00 0.00 4.35
16 17 0.685660 AAGTCCCTTTCCTGTCCGTC 59.314 55.000 0.00 0.00 0.00 4.79
17 18 1.137697 AAAGTCCCTTTCCTGTCCGT 58.862 50.000 0.00 0.00 0.00 4.69
18 19 3.007614 TCTTAAAGTCCCTTTCCTGTCCG 59.992 47.826 0.00 0.00 35.21 4.79
19 20 4.635699 TCTTAAAGTCCCTTTCCTGTCC 57.364 45.455 0.00 0.00 35.21 4.02
20 21 9.901172 TTATAATCTTAAAGTCCCTTTCCTGTC 57.099 33.333 0.00 0.00 35.21 3.51
21 22 9.907229 CTTATAATCTTAAAGTCCCTTTCCTGT 57.093 33.333 0.00 0.00 35.21 4.00
22 23 8.841300 GCTTATAATCTTAAAGTCCCTTTCCTG 58.159 37.037 0.00 0.00 35.21 3.86
23 24 8.782927 AGCTTATAATCTTAAAGTCCCTTTCCT 58.217 33.333 0.00 0.00 35.21 3.36
24 25 8.982091 AGCTTATAATCTTAAAGTCCCTTTCC 57.018 34.615 0.00 0.00 35.21 3.13
46 47 9.118300 CATGAATTTCCTGACTTTTCTATAGCT 57.882 33.333 0.00 0.00 0.00 3.32
47 48 8.897752 ACATGAATTTCCTGACTTTTCTATAGC 58.102 33.333 0.00 0.00 0.00 2.97
52 53 9.082313 ACAATACATGAATTTCCTGACTTTTCT 57.918 29.630 0.00 0.00 0.00 2.52
53 54 9.696917 AACAATACATGAATTTCCTGACTTTTC 57.303 29.630 0.00 0.00 0.00 2.29
58 59 8.711457 CCAAAAACAATACATGAATTTCCTGAC 58.289 33.333 0.00 0.00 0.00 3.51
63 64 9.050601 TGTTCCCAAAAACAATACATGAATTTC 57.949 29.630 0.00 0.00 36.25 2.17
64 65 8.970859 TGTTCCCAAAAACAATACATGAATTT 57.029 26.923 0.00 0.00 36.25 1.82
71 72 9.838339 ATAAAACATGTTCCCAAAAACAATACA 57.162 25.926 12.39 0.00 42.10 2.29
107 108 2.030893 CCATCAACACAGACACGCAAAT 60.031 45.455 0.00 0.00 0.00 2.32
108 109 1.333308 CCATCAACACAGACACGCAAA 59.667 47.619 0.00 0.00 0.00 3.68
109 110 0.943673 CCATCAACACAGACACGCAA 59.056 50.000 0.00 0.00 0.00 4.85
110 111 0.105778 TCCATCAACACAGACACGCA 59.894 50.000 0.00 0.00 0.00 5.24
111 112 1.069906 GTTCCATCAACACAGACACGC 60.070 52.381 0.00 0.00 34.76 5.34
112 113 1.531149 GGTTCCATCAACACAGACACG 59.469 52.381 0.00 0.00 36.61 4.49
113 114 2.808543 GAGGTTCCATCAACACAGACAC 59.191 50.000 0.00 0.00 36.61 3.67
114 115 2.437651 TGAGGTTCCATCAACACAGACA 59.562 45.455 0.00 0.00 36.61 3.41
115 116 3.070018 CTGAGGTTCCATCAACACAGAC 58.930 50.000 0.00 0.00 40.42 3.51
116 117 2.038952 CCTGAGGTTCCATCAACACAGA 59.961 50.000 0.00 0.00 40.42 3.41
117 118 2.430465 CCTGAGGTTCCATCAACACAG 58.570 52.381 0.00 0.00 39.04 3.66
118 119 1.545428 GCCTGAGGTTCCATCAACACA 60.545 52.381 0.00 0.00 36.61 3.72
119 120 1.168714 GCCTGAGGTTCCATCAACAC 58.831 55.000 0.00 0.00 36.61 3.32
120 121 0.770499 TGCCTGAGGTTCCATCAACA 59.230 50.000 0.00 0.00 36.61 3.33
121 122 1.909700 TTGCCTGAGGTTCCATCAAC 58.090 50.000 0.00 0.00 0.00 3.18
122 123 2.827322 CAATTGCCTGAGGTTCCATCAA 59.173 45.455 0.00 0.00 0.00 2.57
123 124 2.449464 CAATTGCCTGAGGTTCCATCA 58.551 47.619 0.00 0.00 0.00 3.07
124 125 1.135721 GCAATTGCCTGAGGTTCCATC 59.864 52.381 20.06 0.00 34.31 3.51
125 126 1.188863 GCAATTGCCTGAGGTTCCAT 58.811 50.000 20.06 0.00 34.31 3.41
126 127 1.243342 CGCAATTGCCTGAGGTTCCA 61.243 55.000 24.24 0.00 37.91 3.53
127 128 0.960364 TCGCAATTGCCTGAGGTTCC 60.960 55.000 24.24 0.00 37.91 3.62
128 129 0.449388 CTCGCAATTGCCTGAGGTTC 59.551 55.000 24.24 0.00 37.91 3.62
129 130 1.589716 GCTCGCAATTGCCTGAGGTT 61.590 55.000 26.56 0.00 37.91 3.50
130 131 2.042831 GCTCGCAATTGCCTGAGGT 61.043 57.895 26.56 0.00 37.91 3.85
131 132 2.042259 TGCTCGCAATTGCCTGAGG 61.042 57.895 26.56 14.35 37.91 3.86
132 133 1.136147 GTGCTCGCAATTGCCTGAG 59.864 57.895 24.24 23.75 37.91 3.35
133 134 2.334946 GGTGCTCGCAATTGCCTGA 61.335 57.895 24.24 15.32 37.91 3.86
134 135 2.144833 TTGGTGCTCGCAATTGCCTG 62.145 55.000 24.24 17.23 37.91 4.85
135 136 1.252904 ATTGGTGCTCGCAATTGCCT 61.253 50.000 24.24 0.00 37.91 4.75
136 137 0.390209 AATTGGTGCTCGCAATTGCC 60.390 50.000 24.24 11.27 37.91 4.52
137 138 2.276472 TAATTGGTGCTCGCAATTGC 57.724 45.000 20.76 20.76 31.82 3.56
138 139 5.404968 TCTTTTTAATTGGTGCTCGCAATTG 59.595 36.000 17.82 0.00 31.82 2.32
139 140 5.537188 TCTTTTTAATTGGTGCTCGCAATT 58.463 33.333 14.98 14.98 33.02 2.32
140 141 5.132897 TCTTTTTAATTGGTGCTCGCAAT 57.867 34.783 0.00 0.00 0.00 3.56
141 142 4.576216 TCTTTTTAATTGGTGCTCGCAA 57.424 36.364 0.00 0.00 0.00 4.85
142 143 4.545610 CTTCTTTTTAATTGGTGCTCGCA 58.454 39.130 0.00 0.00 0.00 5.10
143 144 3.364920 GCTTCTTTTTAATTGGTGCTCGC 59.635 43.478 0.00 0.00 0.00 5.03
144 145 4.798574 AGCTTCTTTTTAATTGGTGCTCG 58.201 39.130 0.00 0.00 0.00 5.03
145 146 6.479990 ACAAAGCTTCTTTTTAATTGGTGCTC 59.520 34.615 0.00 0.00 0.00 4.26
146 147 6.258507 CACAAAGCTTCTTTTTAATTGGTGCT 59.741 34.615 0.00 0.00 0.00 4.40
147 148 6.257630 TCACAAAGCTTCTTTTTAATTGGTGC 59.742 34.615 0.00 0.00 0.00 5.01
148 149 7.515059 CGTCACAAAGCTTCTTTTTAATTGGTG 60.515 37.037 0.00 0.00 0.00 4.17
149 150 6.475402 CGTCACAAAGCTTCTTTTTAATTGGT 59.525 34.615 0.00 0.00 0.00 3.67
150 151 6.074356 CCGTCACAAAGCTTCTTTTTAATTGG 60.074 38.462 0.00 0.00 0.00 3.16
151 152 6.695278 TCCGTCACAAAGCTTCTTTTTAATTG 59.305 34.615 0.00 0.00 0.00 2.32
152 153 6.695713 GTCCGTCACAAAGCTTCTTTTTAATT 59.304 34.615 0.00 0.00 0.00 1.40
153 154 6.039382 AGTCCGTCACAAAGCTTCTTTTTAAT 59.961 34.615 0.00 0.00 0.00 1.40
154 155 5.355910 AGTCCGTCACAAAGCTTCTTTTTAA 59.644 36.000 0.00 0.00 0.00 1.52
155 156 4.879545 AGTCCGTCACAAAGCTTCTTTTTA 59.120 37.500 0.00 0.00 0.00 1.52
156 157 3.694566 AGTCCGTCACAAAGCTTCTTTTT 59.305 39.130 0.00 0.00 0.00 1.94
157 158 3.065371 CAGTCCGTCACAAAGCTTCTTTT 59.935 43.478 0.00 0.00 0.00 2.27
158 159 2.614057 CAGTCCGTCACAAAGCTTCTTT 59.386 45.455 0.00 0.00 0.00 2.52
159 160 2.213499 CAGTCCGTCACAAAGCTTCTT 58.787 47.619 0.00 0.00 0.00 2.52
160 161 1.541233 CCAGTCCGTCACAAAGCTTCT 60.541 52.381 0.00 0.00 0.00 2.85
161 162 0.868406 CCAGTCCGTCACAAAGCTTC 59.132 55.000 0.00 0.00 0.00 3.86
162 163 0.468226 TCCAGTCCGTCACAAAGCTT 59.532 50.000 0.00 0.00 0.00 3.74
163 164 0.468226 TTCCAGTCCGTCACAAAGCT 59.532 50.000 0.00 0.00 0.00 3.74
164 165 1.197721 CATTCCAGTCCGTCACAAAGC 59.802 52.381 0.00 0.00 0.00 3.51
165 166 1.806542 CCATTCCAGTCCGTCACAAAG 59.193 52.381 0.00 0.00 0.00 2.77
166 167 1.142060 ACCATTCCAGTCCGTCACAAA 59.858 47.619 0.00 0.00 0.00 2.83
167 168 0.762418 ACCATTCCAGTCCGTCACAA 59.238 50.000 0.00 0.00 0.00 3.33
168 169 1.274167 GTACCATTCCAGTCCGTCACA 59.726 52.381 0.00 0.00 0.00 3.58
169 170 1.549170 AGTACCATTCCAGTCCGTCAC 59.451 52.381 0.00 0.00 0.00 3.67
170 171 1.933021 AGTACCATTCCAGTCCGTCA 58.067 50.000 0.00 0.00 0.00 4.35
171 172 3.329929 AAAGTACCATTCCAGTCCGTC 57.670 47.619 0.00 0.00 0.00 4.79
172 173 4.529377 TCTTAAAGTACCATTCCAGTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
173 174 5.080969 TCTTAAAGTACCATTCCAGTCCG 57.919 43.478 0.00 0.00 0.00 4.79
208 209 8.250143 ACAATACCTGAATTTCCTGACTTTTT 57.750 30.769 0.00 0.00 0.00 1.94
209 210 7.839680 ACAATACCTGAATTTCCTGACTTTT 57.160 32.000 0.00 0.00 0.00 2.27
210 211 7.839680 AACAATACCTGAATTTCCTGACTTT 57.160 32.000 0.00 0.00 0.00 2.66
211 212 7.839680 AAACAATACCTGAATTTCCTGACTT 57.160 32.000 0.00 0.00 0.00 3.01
212 213 7.308589 CGAAAACAATACCTGAATTTCCTGACT 60.309 37.037 0.00 0.00 34.10 3.41
213 214 6.801862 CGAAAACAATACCTGAATTTCCTGAC 59.198 38.462 0.00 0.00 34.10 3.51
214 215 6.072175 CCGAAAACAATACCTGAATTTCCTGA 60.072 38.462 0.00 0.00 34.10 3.86
215 216 6.092748 CCGAAAACAATACCTGAATTTCCTG 58.907 40.000 0.00 0.00 34.10 3.86
216 217 5.185056 CCCGAAAACAATACCTGAATTTCCT 59.815 40.000 0.00 0.00 34.10 3.36
217 218 5.184287 TCCCGAAAACAATACCTGAATTTCC 59.816 40.000 0.00 0.00 34.10 3.13
218 219 6.262193 TCCCGAAAACAATACCTGAATTTC 57.738 37.500 0.00 0.00 34.20 2.17
219 220 6.041069 TGTTCCCGAAAACAATACCTGAATTT 59.959 34.615 0.77 0.00 36.25 1.82
220 221 5.536916 TGTTCCCGAAAACAATACCTGAATT 59.463 36.000 0.77 0.00 36.25 2.17
221 222 5.074115 TGTTCCCGAAAACAATACCTGAAT 58.926 37.500 0.77 0.00 36.25 2.57
222 223 4.462133 TGTTCCCGAAAACAATACCTGAA 58.538 39.130 0.77 0.00 36.25 3.02
223 224 4.088056 TGTTCCCGAAAACAATACCTGA 57.912 40.909 0.77 0.00 36.25 3.86
224 225 4.217550 ACATGTTCCCGAAAACAATACCTG 59.782 41.667 6.65 3.72 42.10 4.00
225 226 4.403734 ACATGTTCCCGAAAACAATACCT 58.596 39.130 6.65 0.00 42.10 3.08
226 227 4.776795 ACATGTTCCCGAAAACAATACC 57.223 40.909 6.65 0.00 42.10 2.73
227 228 8.643752 CATAAAACATGTTCCCGAAAACAATAC 58.356 33.333 12.39 0.00 42.10 1.89
228 229 8.361139 ACATAAAACATGTTCCCGAAAACAATA 58.639 29.630 12.39 0.00 42.10 1.90
229 230 7.213678 ACATAAAACATGTTCCCGAAAACAAT 58.786 30.769 12.39 0.00 42.10 2.71
230 231 6.574350 ACATAAAACATGTTCCCGAAAACAA 58.426 32.000 12.39 0.00 42.10 2.83
231 232 6.150396 ACATAAAACATGTTCCCGAAAACA 57.850 33.333 12.39 5.26 42.92 2.83
243 244 7.148771 ACGCAAATGACATGAACATAAAACATG 60.149 33.333 0.00 0.00 44.42 3.21
244 245 6.867816 ACGCAAATGACATGAACATAAAACAT 59.132 30.769 0.00 0.00 0.00 2.71
245 246 6.212235 ACGCAAATGACATGAACATAAAACA 58.788 32.000 0.00 0.00 0.00 2.83
246 247 6.582295 AGACGCAAATGACATGAACATAAAAC 59.418 34.615 0.00 0.00 0.00 2.43
247 248 6.581919 CAGACGCAAATGACATGAACATAAAA 59.418 34.615 0.00 0.00 0.00 1.52
248 249 6.085573 CAGACGCAAATGACATGAACATAAA 58.914 36.000 0.00 0.00 0.00 1.40
249 250 5.181056 ACAGACGCAAATGACATGAACATAA 59.819 36.000 0.00 0.00 0.00 1.90
250 251 4.694982 ACAGACGCAAATGACATGAACATA 59.305 37.500 0.00 0.00 0.00 2.29
251 252 3.503363 ACAGACGCAAATGACATGAACAT 59.497 39.130 0.00 1.80 0.00 2.71
252 253 2.877786 ACAGACGCAAATGACATGAACA 59.122 40.909 0.00 0.00 0.00 3.18
253 254 3.228749 CACAGACGCAAATGACATGAAC 58.771 45.455 0.00 0.00 0.00 3.18
254 255 2.877786 ACACAGACGCAAATGACATGAA 59.122 40.909 0.00 0.00 0.00 2.57
255 256 2.493035 ACACAGACGCAAATGACATGA 58.507 42.857 0.00 0.00 0.00 3.07
256 257 2.975193 CAACACAGACGCAAATGACATG 59.025 45.455 0.00 0.00 0.00 3.21
257 258 2.877786 TCAACACAGACGCAAATGACAT 59.122 40.909 0.00 0.00 0.00 3.06
258 259 2.284190 TCAACACAGACGCAAATGACA 58.716 42.857 0.00 0.00 0.00 3.58
259 260 3.228749 CATCAACACAGACGCAAATGAC 58.771 45.455 0.00 0.00 0.00 3.06
260 261 2.226200 CCATCAACACAGACGCAAATGA 59.774 45.455 0.00 0.00 0.00 2.57
261 262 2.226200 TCCATCAACACAGACGCAAATG 59.774 45.455 0.00 0.00 0.00 2.32
262 263 2.503331 TCCATCAACACAGACGCAAAT 58.497 42.857 0.00 0.00 0.00 2.32
263 264 1.960417 TCCATCAACACAGACGCAAA 58.040 45.000 0.00 0.00 0.00 3.68
267 268 3.059597 GTGAAGTTCCATCAACACAGACG 60.060 47.826 0.00 0.00 37.48 4.18
276 277 2.351641 GCAATTGCGTGAAGTTCCATCA 60.352 45.455 15.87 0.00 0.00 3.07
277 278 2.253603 GCAATTGCGTGAAGTTCCATC 58.746 47.619 15.87 0.00 0.00 3.51
297 298 6.402226 GGACTTAAACTCTTAAATGGTGCTCG 60.402 42.308 0.00 0.00 0.00 5.03
301 302 9.152595 GTCTAGGACTTAAACTCTTAAATGGTG 57.847 37.037 0.00 0.00 0.00 4.17
302 303 9.102453 AGTCTAGGACTTAAACTCTTAAATGGT 57.898 33.333 0.00 0.00 40.28 3.55
317 318 7.044798 GAGCATCAATGTTAAGTCTAGGACTT 58.955 38.462 15.66 15.66 44.65 3.01
318 319 6.552445 AGCATCAATGTTAAGTCTAGGACT 57.448 37.500 0.00 0.00 45.64 3.85
319 320 5.460419 CGAGCATCAATGTTAAGTCTAGGAC 59.540 44.000 0.00 0.00 33.17 3.85
322 323 4.805719 TGCGAGCATCAATGTTAAGTCTAG 59.194 41.667 0.00 0.00 33.17 2.43
327 403 5.230726 GGAAAATGCGAGCATCAATGTTAAG 59.769 40.000 11.26 0.00 35.31 1.85
334 410 1.135315 GCAGGAAAATGCGAGCATCAA 60.135 47.619 11.26 0.00 36.28 2.57
351 427 4.023707 CCGGAAAGCCTAGAATAAATGCAG 60.024 45.833 0.00 0.00 0.00 4.41
362 438 1.144057 ACATCGCCGGAAAGCCTAG 59.856 57.895 5.05 0.00 0.00 3.02
363 439 1.153449 CACATCGCCGGAAAGCCTA 60.153 57.895 5.05 0.00 0.00 3.93
368 444 0.533085 TGAACACACATCGCCGGAAA 60.533 50.000 5.05 0.00 0.00 3.13
372 448 1.492873 CACTGAACACACATCGCCG 59.507 57.895 0.00 0.00 0.00 6.46
382 458 2.030027 ACATCTCCTCCCACTGAACA 57.970 50.000 0.00 0.00 0.00 3.18
383 459 2.569404 AGAACATCTCCTCCCACTGAAC 59.431 50.000 0.00 0.00 0.00 3.18
386 462 1.135915 CGAGAACATCTCCTCCCACTG 59.864 57.143 1.98 0.00 40.34 3.66
399 475 5.008331 ACATCTTAGTAGTCCACGAGAACA 58.992 41.667 0.00 0.00 31.07 3.18
403 479 4.636648 ACAGACATCTTAGTAGTCCACGAG 59.363 45.833 0.00 0.00 32.82 4.18
406 482 5.642686 GTCACAGACATCTTAGTAGTCCAC 58.357 45.833 0.00 0.00 32.82 4.02
408 484 4.634883 TCGTCACAGACATCTTAGTAGTCC 59.365 45.833 0.00 0.00 32.82 3.85
410 486 5.247084 AGTCGTCACAGACATCTTAGTAGT 58.753 41.667 3.22 0.00 43.24 2.73
415 491 5.196341 ACAAAGTCGTCACAGACATCTTA 57.804 39.130 3.22 0.00 43.24 2.10
419 495 6.481976 TGAAATTACAAAGTCGTCACAGACAT 59.518 34.615 3.22 0.00 43.24 3.06
420 496 5.813157 TGAAATTACAAAGTCGTCACAGACA 59.187 36.000 3.22 0.00 43.24 3.41
423 499 6.943981 TCTTGAAATTACAAAGTCGTCACAG 58.056 36.000 0.00 0.00 0.00 3.66
428 504 8.017373 CACATCATCTTGAAATTACAAAGTCGT 58.983 33.333 0.00 0.00 0.00 4.34
431 507 7.092716 GGCACATCATCTTGAAATTACAAAGT 58.907 34.615 0.00 0.00 0.00 2.66
441 517 4.196971 CTGATCTGGCACATCATCTTGAA 58.803 43.478 5.88 0.00 38.20 2.69
457 533 1.135141 GCAGCTTCGACAGACTGATCT 60.135 52.381 10.08 0.00 34.57 2.75
459 535 0.108424 GGCAGCTTCGACAGACTGAT 60.108 55.000 10.08 0.00 31.69 2.90
467 543 1.227674 CCCTATGGGCAGCTTCGAC 60.228 63.158 0.00 0.00 35.35 4.20
478 554 0.902531 CGCATACCCTACCCCTATGG 59.097 60.000 0.00 0.00 41.37 2.74
484 560 1.679559 AACGGACGCATACCCTACCC 61.680 60.000 0.00 0.00 0.00 3.69
486 562 0.457035 TGAACGGACGCATACCCTAC 59.543 55.000 0.00 0.00 0.00 3.18
490 566 2.292569 TCTCTATGAACGGACGCATACC 59.707 50.000 0.00 0.00 0.00 2.73
491 567 3.620929 TCTCTATGAACGGACGCATAC 57.379 47.619 0.00 0.00 0.00 2.39
492 568 3.818773 TCATCTCTATGAACGGACGCATA 59.181 43.478 0.00 0.00 39.20 3.14
493 569 2.623416 TCATCTCTATGAACGGACGCAT 59.377 45.455 0.00 0.00 39.20 4.73
494 570 2.021457 TCATCTCTATGAACGGACGCA 58.979 47.619 0.00 0.00 39.20 5.24
495 571 2.033550 ACTCATCTCTATGAACGGACGC 59.966 50.000 0.00 0.00 41.57 5.19
496 572 3.065510 ACACTCATCTCTATGAACGGACG 59.934 47.826 0.00 0.00 41.57 4.79
497 573 4.640789 ACACTCATCTCTATGAACGGAC 57.359 45.455 0.00 0.00 41.57 4.79
498 574 5.828328 ACATACACTCATCTCTATGAACGGA 59.172 40.000 0.00 0.00 41.57 4.69
499 575 5.917447 CACATACACTCATCTCTATGAACGG 59.083 44.000 0.00 0.00 41.57 4.44
500 576 6.729187 TCACATACACTCATCTCTATGAACG 58.271 40.000 0.00 0.00 41.57 3.95
501 577 6.640499 GCTCACATACACTCATCTCTATGAAC 59.360 42.308 0.00 0.00 41.57 3.18
511 587 0.826715 AGCCGCTCACATACACTCAT 59.173 50.000 0.00 0.00 0.00 2.90
518 594 4.881273 ACAATAATCAAAGCCGCTCACATA 59.119 37.500 0.00 0.00 0.00 2.29
522 598 3.609853 AGACAATAATCAAAGCCGCTCA 58.390 40.909 0.00 0.00 0.00 4.26
523 599 4.622701 AAGACAATAATCAAAGCCGCTC 57.377 40.909 0.00 0.00 0.00 5.03
524 600 5.391312 AAAAGACAATAATCAAAGCCGCT 57.609 34.783 0.00 0.00 0.00 5.52
556 632 4.087907 AGAGCGAGGTAGTCCTAGTTTTT 58.912 43.478 0.00 0.00 45.24 1.94
580 660 1.328680 GTGATCCATAGTTGCACGCAG 59.671 52.381 0.00 0.00 0.00 5.18
583 663 0.930310 CGGTGATCCATAGTTGCACG 59.070 55.000 0.00 0.00 0.00 5.34
592 672 3.397618 TGATATTTTCCCCGGTGATCCAT 59.602 43.478 0.00 0.00 0.00 3.41
598 678 5.348164 GTGATTTTGATATTTTCCCCGGTG 58.652 41.667 0.00 0.00 0.00 4.94
651 755 1.227615 GTTGTTCGTTCGGGTCCCA 60.228 57.895 9.12 0.00 0.00 4.37
876 994 5.182570 CCCTAATAGCTACACGCACTATGTA 59.817 44.000 0.00 0.00 42.61 2.29
877 995 4.022242 CCCTAATAGCTACACGCACTATGT 60.022 45.833 0.00 0.00 42.61 2.29
948 1070 2.358737 CGGAAAAGAGGCGCCAGT 60.359 61.111 31.54 12.76 0.00 4.00
949 1071 3.804193 GCGGAAAAGAGGCGCCAG 61.804 66.667 31.54 9.81 0.00 4.85
951 1073 2.942648 ATAGGCGGAAAAGAGGCGCC 62.943 60.000 21.89 21.89 45.09 6.53
952 1074 0.249741 TATAGGCGGAAAAGAGGCGC 60.250 55.000 0.00 0.00 38.03 6.53
953 1075 2.234300 TTATAGGCGGAAAAGAGGCG 57.766 50.000 0.00 0.00 38.03 5.52
954 1076 3.304726 GCATTTATAGGCGGAAAAGAGGC 60.305 47.826 0.00 0.00 0.00 4.70
1070 1192 1.271127 GGAGGAGGAAGAAGGCAGCT 61.271 60.000 0.00 0.00 0.00 4.24
1071 1193 1.223211 GGAGGAGGAAGAAGGCAGC 59.777 63.158 0.00 0.00 0.00 5.25
1072 1194 0.620121 AGGGAGGAGGAAGAAGGCAG 60.620 60.000 0.00 0.00 0.00 4.85
1080 1202 2.826488 CAGAAAGAGAGGGAGGAGGAA 58.174 52.381 0.00 0.00 0.00 3.36
1088 1210 2.641305 CTTCATGGCAGAAAGAGAGGG 58.359 52.381 5.90 0.00 0.00 4.30
1089 1211 2.015587 GCTTCATGGCAGAAAGAGAGG 58.984 52.381 13.96 0.00 0.00 3.69
1411 1536 2.361610 AATTGCAGGTCCGGCCAG 60.362 61.111 11.78 9.77 40.61 4.85
1485 1619 7.085052 AGTTCATGTTCATCATCAGTTCATG 57.915 36.000 0.00 0.00 34.09 3.07
1487 1621 6.232692 TGAGTTCATGTTCATCATCAGTTCA 58.767 36.000 0.00 0.00 34.09 3.18
1488 1622 6.732531 TGAGTTCATGTTCATCATCAGTTC 57.267 37.500 0.00 0.00 34.09 3.01
1489 1623 7.317842 GATGAGTTCATGTTCATCATCAGTT 57.682 36.000 21.61 0.49 45.68 3.16
1490 1624 6.922247 GATGAGTTCATGTTCATCATCAGT 57.078 37.500 21.61 1.08 45.68 3.41
1523 1657 4.644103 TCGATCTAGTCCCGGTTTTTAG 57.356 45.455 0.00 0.00 0.00 1.85
1531 1665 0.321387 TCCCGATCGATCTAGTCCCG 60.321 60.000 22.43 8.50 0.00 5.14
1539 1673 3.254657 ACATCTTCTTCTCCCGATCGATC 59.745 47.826 18.66 15.68 0.00 3.69
1540 1674 3.005261 CACATCTTCTTCTCCCGATCGAT 59.995 47.826 18.66 0.00 0.00 3.59
1541 1675 2.359214 CACATCTTCTTCTCCCGATCGA 59.641 50.000 18.66 0.00 0.00 3.59
1542 1676 2.544694 CCACATCTTCTTCTCCCGATCG 60.545 54.545 8.51 8.51 0.00 3.69
1574 1711 6.377327 TCTCCAAGAGAAACATGAACAAAC 57.623 37.500 0.00 0.00 35.59 2.93
1635 1777 2.702751 TATATGCACGAACCCGGCCG 62.703 60.000 21.04 21.04 40.78 6.13
1636 1778 0.321298 ATATATGCACGAACCCGGCC 60.321 55.000 0.00 0.00 40.78 6.13
1637 1779 2.373540 TATATATGCACGAACCCGGC 57.626 50.000 0.00 0.00 40.78 6.13
1638 1780 3.194861 CCATATATATGCACGAACCCGG 58.805 50.000 16.08 0.00 34.71 5.73
1676 1818 3.376918 GCAGCTTCAACCCAGGGC 61.377 66.667 4.91 0.00 0.00 5.19
1839 1985 5.669477 AGATTAACAACTGGAGAGAGATGC 58.331 41.667 0.00 0.00 0.00 3.91
1840 1986 6.036953 GCAAGATTAACAACTGGAGAGAGATG 59.963 42.308 0.00 0.00 0.00 2.90
1841 1987 6.112058 GCAAGATTAACAACTGGAGAGAGAT 58.888 40.000 0.00 0.00 0.00 2.75
1842 1988 5.482908 GCAAGATTAACAACTGGAGAGAGA 58.517 41.667 0.00 0.00 0.00 3.10
1843 1989 4.633565 GGCAAGATTAACAACTGGAGAGAG 59.366 45.833 0.00 0.00 0.00 3.20
1851 1997 3.525800 ACTGGGGCAAGATTAACAACT 57.474 42.857 0.00 0.00 0.00 3.16
1858 2004 1.970640 GAAACCAACTGGGGCAAGATT 59.029 47.619 0.00 0.00 42.91 2.40
1859 2005 1.147817 AGAAACCAACTGGGGCAAGAT 59.852 47.619 0.00 0.00 42.91 2.40
1861 2007 0.675633 CAGAAACCAACTGGGGCAAG 59.324 55.000 0.00 0.00 42.91 4.01
1862 2008 0.032615 ACAGAAACCAACTGGGGCAA 60.033 50.000 0.00 0.00 42.91 4.52
1863 2009 0.754957 CACAGAAACCAACTGGGGCA 60.755 55.000 0.00 0.00 42.91 5.36
1864 2010 2.041153 CACAGAAACCAACTGGGGC 58.959 57.895 0.00 0.00 42.91 5.80
1866 2012 1.270550 GATGCACAGAAACCAACTGGG 59.729 52.381 0.00 0.00 41.17 4.45
1867 2013 1.270550 GGATGCACAGAAACCAACTGG 59.729 52.381 0.00 0.00 39.38 4.00
1868 2014 1.955778 TGGATGCACAGAAACCAACTG 59.044 47.619 0.00 0.00 40.68 3.16
1869 2015 2.363306 TGGATGCACAGAAACCAACT 57.637 45.000 0.00 0.00 0.00 3.16
1871 2017 3.431486 GGTTTTGGATGCACAGAAACCAA 60.431 43.478 20.84 13.56 45.29 3.67
1873 2019 2.102252 TGGTTTTGGATGCACAGAAACC 59.898 45.455 19.61 19.61 45.85 3.27
1874 2020 3.451141 TGGTTTTGGATGCACAGAAAC 57.549 42.857 4.84 4.84 0.00 2.78
1875 2021 3.244146 CCATGGTTTTGGATGCACAGAAA 60.244 43.478 2.57 0.00 39.25 2.52
1916 2065 1.202698 GCCGGTTCTTCCTCTGCATAT 60.203 52.381 1.90 0.00 0.00 1.78
1917 2066 0.178068 GCCGGTTCTTCCTCTGCATA 59.822 55.000 1.90 0.00 0.00 3.14
1918 2067 1.078143 GCCGGTTCTTCCTCTGCAT 60.078 57.895 1.90 0.00 0.00 3.96
1919 2068 2.347490 GCCGGTTCTTCCTCTGCA 59.653 61.111 1.90 0.00 0.00 4.41
1934 2083 3.555966 ACTAGAATTAAGCACCATGGCC 58.444 45.455 13.04 2.82 0.00 5.36
1959 2108 3.078837 ACCAAACTTATTAGCACCACGG 58.921 45.455 0.00 0.00 0.00 4.94
1960 2109 3.119990 CCACCAAACTTATTAGCACCACG 60.120 47.826 0.00 0.00 0.00 4.94
1961 2110 3.824443 ACCACCAAACTTATTAGCACCAC 59.176 43.478 0.00 0.00 0.00 4.16
1962 2111 3.823873 CACCACCAAACTTATTAGCACCA 59.176 43.478 0.00 0.00 0.00 4.17
1963 2112 3.824443 ACACCACCAAACTTATTAGCACC 59.176 43.478 0.00 0.00 0.00 5.01
1964 2113 4.320935 CCACACCACCAAACTTATTAGCAC 60.321 45.833 0.00 0.00 0.00 4.40
1965 2114 3.823873 CCACACCACCAAACTTATTAGCA 59.176 43.478 0.00 0.00 0.00 3.49
1966 2115 4.076394 TCCACACCACCAAACTTATTAGC 58.924 43.478 0.00 0.00 0.00 3.09
1967 2116 5.313712 AGTCCACACCACCAAACTTATTAG 58.686 41.667 0.00 0.00 0.00 1.73
1968 2117 5.313280 AGTCCACACCACCAAACTTATTA 57.687 39.130 0.00 0.00 0.00 0.98
1969 2118 4.178956 AGTCCACACCACCAAACTTATT 57.821 40.909 0.00 0.00 0.00 1.40
1970 2119 3.876309 AGTCCACACCACCAAACTTAT 57.124 42.857 0.00 0.00 0.00 1.73
1971 2120 4.505918 CCATAGTCCACACCACCAAACTTA 60.506 45.833 0.00 0.00 0.00 2.24
1972 2121 3.486383 CATAGTCCACACCACCAAACTT 58.514 45.455 0.00 0.00 0.00 2.66
1973 2122 2.224769 CCATAGTCCACACCACCAAACT 60.225 50.000 0.00 0.00 0.00 2.66
1974 2123 2.159382 CCATAGTCCACACCACCAAAC 58.841 52.381 0.00 0.00 0.00 2.93
1975 2124 2.058705 TCCATAGTCCACACCACCAAA 58.941 47.619 0.00 0.00 0.00 3.28
1976 2125 1.735926 TCCATAGTCCACACCACCAA 58.264 50.000 0.00 0.00 0.00 3.67
2004 2171 8.579863 CCAGATCAAAAGGACAAGAATTAAAGT 58.420 33.333 0.00 0.00 0.00 2.66
2010 2177 5.261040 TCCCAGATCAAAAGGACAAGAAT 57.739 39.130 0.00 0.00 0.00 2.40
2031 2199 1.068588 GCTGGTTCCCAACAACCTTTC 59.931 52.381 4.10 0.00 45.54 2.62
2073 2241 2.681848 GCATGATGAACTTCCTGGTCTG 59.318 50.000 0.00 0.00 32.49 3.51
2075 2243 2.996631 AGCATGATGAACTTCCTGGTC 58.003 47.619 0.00 0.00 0.00 4.02
2077 2245 3.129988 GGAAAGCATGATGAACTTCCTGG 59.870 47.826 5.14 0.00 0.00 4.45
2078 2246 4.015084 AGGAAAGCATGATGAACTTCCTG 58.985 43.478 12.70 0.00 0.00 3.86
2082 2267 3.159472 TGCAGGAAAGCATGATGAACTT 58.841 40.909 0.00 0.00 40.11 2.66
2127 2316 5.772521 ACAACCAAACATATGACAAAGAGC 58.227 37.500 10.38 0.00 0.00 4.09
2182 2392 1.912043 ACAACCTTCTCCAGATCAGGG 59.088 52.381 4.05 0.39 0.00 4.45
2217 2427 4.754372 TGATGAGCATGTTTCACAGTTC 57.246 40.909 4.50 0.72 0.00 3.01
2244 2454 3.564644 GCCATGAACTCCTCAGATCATTG 59.435 47.826 0.00 0.00 39.51 2.82
2256 2466 0.467804 GAGAGAGGGGCCATGAACTC 59.532 60.000 4.39 0.84 0.00 3.01
2268 2478 3.963374 TGAGAGAGAGAGAGAGAGAGAGG 59.037 52.174 0.00 0.00 0.00 3.69
2282 2492 7.525194 GCCTCTAAAATAGCATGATGAGAGAGA 60.525 40.741 0.00 0.00 32.65 3.10
2283 2493 6.591062 GCCTCTAAAATAGCATGATGAGAGAG 59.409 42.308 0.00 0.26 32.65 3.20
2284 2494 6.042437 TGCCTCTAAAATAGCATGATGAGAGA 59.958 38.462 0.00 0.00 32.65 3.10
2285 2495 6.228995 TGCCTCTAAAATAGCATGATGAGAG 58.771 40.000 0.00 0.00 0.00 3.20
2286 2496 6.178607 TGCCTCTAAAATAGCATGATGAGA 57.821 37.500 0.00 0.00 0.00 3.27
2287 2497 6.872628 TTGCCTCTAAAATAGCATGATGAG 57.127 37.500 0.00 0.00 34.72 2.90
2288 2498 8.922931 TTATTGCCTCTAAAATAGCATGATGA 57.077 30.769 0.00 0.00 34.72 2.92
2379 2589 6.295123 GGATTCTCAGTCCACTAGTTTACACA 60.295 42.308 0.00 0.00 35.76 3.72
2380 2590 6.071278 AGGATTCTCAGTCCACTAGTTTACAC 60.071 42.308 0.00 0.00 38.25 2.90
2453 2663 1.603739 GCCCACTCTGGTTTGGTCC 60.604 63.158 0.00 0.00 35.17 4.46
2455 2665 1.943730 TTGGCCCACTCTGGTTTGGT 61.944 55.000 0.00 0.00 35.17 3.67
2463 2673 0.038744 CAAGGTGATTGGCCCACTCT 59.961 55.000 0.00 0.00 35.08 3.24
2465 2675 1.607467 GCAAGGTGATTGGCCCACT 60.607 57.895 0.00 0.00 39.47 4.00
2596 2811 5.536161 ACATATGGTGTCATAATCAAAGCCC 59.464 40.000 7.80 0.00 39.10 5.19
2625 2840 3.243068 CCACAAGCTAGACAACAAACACC 60.243 47.826 0.00 0.00 0.00 4.16
2627 2842 2.357637 GCCACAAGCTAGACAACAAACA 59.642 45.455 0.00 0.00 38.99 2.83
2670 2885 3.190874 GACGAAAGAATGGCTCCTACAG 58.809 50.000 0.00 0.00 0.00 2.74
2677 2892 0.984230 TCTGGGACGAAAGAATGGCT 59.016 50.000 0.00 0.00 0.00 4.75
2679 2894 2.939103 GACATCTGGGACGAAAGAATGG 59.061 50.000 0.00 0.00 0.00 3.16
2683 2898 1.825474 GGAGACATCTGGGACGAAAGA 59.175 52.381 0.00 0.00 0.00 2.52
2689 2904 2.042464 TGCATAGGAGACATCTGGGAC 58.958 52.381 0.00 0.00 0.00 4.46
2691 2906 1.071385 GGTGCATAGGAGACATCTGGG 59.929 57.143 0.00 0.00 0.00 4.45
2709 2924 1.352622 TGGTTCTGCCTTGTGAGGGT 61.353 55.000 0.00 0.00 43.75 4.34
2740 2955 8.353423 ACAACCAAAATAGTGAATAATCAGCT 57.647 30.769 0.00 0.00 35.88 4.24
2741 2956 9.722056 CTACAACCAAAATAGTGAATAATCAGC 57.278 33.333 0.00 0.00 35.88 4.26
2743 2958 9.747898 ACCTACAACCAAAATAGTGAATAATCA 57.252 29.630 0.00 0.00 0.00 2.57
2747 2962 9.575868 TCAAACCTACAACCAAAATAGTGAATA 57.424 29.630 0.00 0.00 0.00 1.75
2748 2963 8.472007 TCAAACCTACAACCAAAATAGTGAAT 57.528 30.769 0.00 0.00 0.00 2.57
2749 2964 7.469456 GCTCAAACCTACAACCAAAATAGTGAA 60.469 37.037 0.00 0.00 0.00 3.18
2750 2965 6.016610 GCTCAAACCTACAACCAAAATAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
2751 2966 6.149633 GCTCAAACCTACAACCAAAATAGTG 58.850 40.000 0.00 0.00 0.00 2.74
2752 2967 5.830991 TGCTCAAACCTACAACCAAAATAGT 59.169 36.000 0.00 0.00 0.00 2.12
2753 2968 6.149633 GTGCTCAAACCTACAACCAAAATAG 58.850 40.000 0.00 0.00 0.00 1.73
2754 2969 5.594725 TGTGCTCAAACCTACAACCAAAATA 59.405 36.000 0.00 0.00 0.00 1.40
2755 2970 4.404073 TGTGCTCAAACCTACAACCAAAAT 59.596 37.500 0.00 0.00 0.00 1.82
2756 2971 3.764434 TGTGCTCAAACCTACAACCAAAA 59.236 39.130 0.00 0.00 0.00 2.44
2757 2972 3.129638 GTGTGCTCAAACCTACAACCAAA 59.870 43.478 0.00 0.00 0.00 3.28
2758 2973 2.685897 GTGTGCTCAAACCTACAACCAA 59.314 45.455 0.00 0.00 0.00 3.67
2759 2974 2.294074 GTGTGCTCAAACCTACAACCA 58.706 47.619 0.00 0.00 0.00 3.67
2760 2975 2.294074 TGTGTGCTCAAACCTACAACC 58.706 47.619 0.00 0.00 0.00 3.77
2761 2976 4.568152 AATGTGTGCTCAAACCTACAAC 57.432 40.909 0.00 0.00 0.00 3.32
2762 2977 5.590530 AAAATGTGTGCTCAAACCTACAA 57.409 34.783 0.00 0.00 0.00 2.41
2763 2978 5.590530 AAAAATGTGTGCTCAAACCTACA 57.409 34.783 0.00 0.00 0.00 2.74
2785 3000 2.498885 GCTAGTCGGAGGAGGGTAAAAA 59.501 50.000 0.00 0.00 0.00 1.94
2786 3001 2.105766 GCTAGTCGGAGGAGGGTAAAA 58.894 52.381 0.00 0.00 0.00 1.52
2787 3002 1.687368 GGCTAGTCGGAGGAGGGTAAA 60.687 57.143 0.00 0.00 0.00 2.01
2788 3003 0.106318 GGCTAGTCGGAGGAGGGTAA 60.106 60.000 0.00 0.00 0.00 2.85
2789 3004 1.535685 GGCTAGTCGGAGGAGGGTA 59.464 63.158 0.00 0.00 0.00 3.69
2790 3005 2.279408 GGCTAGTCGGAGGAGGGT 59.721 66.667 0.00 0.00 0.00 4.34
2791 3006 2.907917 CGGCTAGTCGGAGGAGGG 60.908 72.222 9.38 0.00 0.00 4.30
2792 3007 3.597728 GCGGCTAGTCGGAGGAGG 61.598 72.222 19.86 0.00 0.00 4.30
2793 3008 2.065906 GAAGCGGCTAGTCGGAGGAG 62.066 65.000 19.86 0.00 0.00 3.69
2794 3009 2.044252 AAGCGGCTAGTCGGAGGA 60.044 61.111 19.86 0.00 0.00 3.71
2795 3010 2.413765 GAAGCGGCTAGTCGGAGG 59.586 66.667 19.86 0.00 0.00 4.30
2796 3011 2.024871 CGAAGCGGCTAGTCGGAG 59.975 66.667 19.86 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.