Multiple sequence alignment - TraesCS5B01G514700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G514700 chr5B 100.000 3596 0 0 1 3596 679560833 679557238 0.000000e+00 6641.0
1 TraesCS5B01G514700 chr5B 84.072 1218 112 44 896 2056 679405435 679404243 0.000000e+00 1099.0
2 TraesCS5B01G514700 chr5B 81.494 1232 144 43 875 2056 679672070 679673267 0.000000e+00 935.0
3 TraesCS5B01G514700 chr5B 87.137 241 27 4 2 240 416592108 416591870 1.650000e-68 270.0
4 TraesCS5B01G514700 chr5B 85.000 260 19 7 3065 3315 679401837 679401589 2.770000e-61 246.0
5 TraesCS5B01G514700 chr5B 90.845 142 11 2 2718 2857 679403602 679403461 4.740000e-44 189.0
6 TraesCS5B01G514700 chr5D 92.611 1218 43 26 868 2056 538442395 538441196 0.000000e+00 1707.0
7 TraesCS5B01G514700 chr5D 88.203 1085 82 21 1000 2056 538425235 538424169 0.000000e+00 1253.0
8 TraesCS5B01G514700 chr5D 85.851 1046 109 19 896 1910 538655373 538656410 0.000000e+00 1075.0
9 TraesCS5B01G514700 chr5D 84.765 1083 118 32 1000 2056 538621569 538622630 0.000000e+00 1042.0
10 TraesCS5B01G514700 chr5D 87.018 855 82 15 999 1831 538417272 538416425 0.000000e+00 937.0
11 TraesCS5B01G514700 chr5D 96.121 464 11 2 2248 2704 538441053 538440590 0.000000e+00 750.0
12 TraesCS5B01G514700 chr5D 83.003 706 99 9 1 687 538525471 538524768 1.420000e-173 619.0
13 TraesCS5B01G514700 chr5D 89.062 448 42 5 2249 2695 538424009 538423568 1.890000e-152 549.0
14 TraesCS5B01G514700 chr5D 90.680 397 33 3 2249 2645 538622746 538623138 3.180000e-145 525.0
15 TraesCS5B01G514700 chr5D 89.048 420 39 4 2250 2666 538656481 538656896 6.880000e-142 514.0
16 TraesCS5B01G514700 chr5D 93.548 341 18 4 2718 3054 538440531 538440191 4.140000e-139 505.0
17 TraesCS5B01G514700 chr5D 91.532 248 10 4 3068 3315 538439599 538439363 7.440000e-87 331.0
18 TraesCS5B01G514700 chr5D 86.905 252 14 5 3364 3596 538439344 538439093 7.660000e-67 265.0
19 TraesCS5B01G514700 chr5D 87.500 144 15 2 2718 2858 538423501 538423358 2.870000e-36 163.0
20 TraesCS5B01G514700 chr5D 82.301 113 18 2 246 357 119496576 119496687 2.960000e-16 97.1
21 TraesCS5B01G514700 chr5D 79.508 122 20 5 246 364 332787949 332788068 8.270000e-12 82.4
22 TraesCS5B01G514700 chr4A 91.618 1205 70 24 875 2056 631475847 631477043 0.000000e+00 1637.0
23 TraesCS5B01G514700 chr4A 85.199 1081 103 29 1000 2056 631494246 631495293 0.000000e+00 1057.0
24 TraesCS5B01G514700 chr4A 84.241 1028 121 29 896 1910 630899319 630898320 0.000000e+00 963.0
25 TraesCS5B01G514700 chr4A 90.822 523 27 9 2793 3312 631477785 631478289 0.000000e+00 680.0
26 TraesCS5B01G514700 chr4A 85.489 634 52 19 885 1481 630878227 630877597 3.050000e-175 625.0
27 TraesCS5B01G514700 chr4A 90.213 470 31 6 2249 2703 631477209 631477678 1.850000e-167 599.0
28 TraesCS5B01G514700 chr4A 84.839 620 54 21 896 1499 631507116 631507711 4.000000e-164 588.0
29 TraesCS5B01G514700 chr4A 89.021 419 41 4 2249 2666 631501621 631502035 6.880000e-142 514.0
30 TraesCS5B01G514700 chr4A 88.626 422 43 4 2250 2671 631495464 631495880 3.200000e-140 508.0
31 TraesCS5B01G514700 chr4A 88.378 413 43 3 2249 2659 630876909 630876500 3.230000e-135 492.0
32 TraesCS5B01G514700 chr4A 85.579 423 34 11 2865 3274 631498316 631498724 5.550000e-113 418.0
33 TraesCS5B01G514700 chr4A 86.611 239 28 4 1 237 24768690 24768454 9.900000e-66 261.0
34 TraesCS5B01G514700 chr4A 86.555 238 28 4 2 237 514634638 514634403 3.560000e-65 259.0
35 TraesCS5B01G514700 chr4A 86.364 242 27 6 1 239 683857713 683857951 3.560000e-65 259.0
36 TraesCS5B01G514700 chr4A 81.893 243 12 12 3365 3588 631478311 631478540 3.690000e-40 176.0
37 TraesCS5B01G514700 chr4A 75.055 457 67 19 2718 3132 630897711 630897260 6.170000e-38 169.0
38 TraesCS5B01G514700 chr4A 79.221 231 28 7 2718 2928 630876356 630876126 3.740000e-30 143.0
39 TraesCS5B01G514700 chr4A 83.333 102 11 4 266 364 688485322 688485420 4.950000e-14 89.8
40 TraesCS5B01G514700 chrUn 84.883 1065 120 29 1000 2033 67363390 67362336 0.000000e+00 1037.0
41 TraesCS5B01G514700 chrUn 80.426 235 26 8 2718 2934 67361638 67361406 1.030000e-35 161.0
42 TraesCS5B01G514700 chr1D 94.167 600 21 6 2718 3315 6385752 6385165 0.000000e+00 902.0
43 TraesCS5B01G514700 chr1D 91.372 452 28 4 2264 2704 6386263 6385812 3.070000e-170 608.0
44 TraesCS5B01G514700 chr1D 84.052 232 11 8 3378 3596 6385130 6384912 2.190000e-47 200.0
45 TraesCS5B01G514700 chr1D 82.090 134 21 3 240 371 305220153 305220021 1.060000e-20 111.0
46 TraesCS5B01G514700 chr1D 79.200 125 22 4 247 369 449488097 449488219 2.300000e-12 84.2
47 TraesCS5B01G514700 chr1A 87.342 237 26 4 2 236 350489825 350489591 5.920000e-68 268.0
48 TraesCS5B01G514700 chr1A 97.826 46 1 0 2054 2099 304031888 304031933 2.980000e-11 80.5
49 TraesCS5B01G514700 chr7A 86.364 242 29 4 1 240 620420444 620420683 9.900000e-66 261.0
50 TraesCS5B01G514700 chr7A 84.000 75 12 0 342 416 520562775 520562701 4.980000e-09 73.1
51 TraesCS5B01G514700 chr4B 86.364 242 29 4 1 240 484585713 484585474 9.900000e-66 261.0
52 TraesCS5B01G514700 chr6D 86.066 244 28 6 1 241 191275255 191275015 1.280000e-64 257.0
53 TraesCS5B01G514700 chr7D 82.014 139 23 2 261 398 475376778 475376915 2.270000e-22 117.0
54 TraesCS5B01G514700 chr7D 84.416 77 11 1 559 634 498275848 498275924 1.380000e-09 75.0
55 TraesCS5B01G514700 chr7B 72.319 401 90 12 246 632 444099311 444098918 4.910000e-19 106.0
56 TraesCS5B01G514700 chr7B 77.439 164 34 3 254 416 499257791 499257952 1.060000e-15 95.3
57 TraesCS5B01G514700 chr7B 97.917 48 1 0 2052 2099 652133196 652133243 2.300000e-12 84.2
58 TraesCS5B01G514700 chr7B 79.167 120 22 3 246 364 706466366 706466483 2.980000e-11 80.5
59 TraesCS5B01G514700 chr2A 82.609 115 18 2 247 360 729682950 729683063 2.280000e-17 100.0
60 TraesCS5B01G514700 chr2A 88.732 71 4 3 2052 2118 39177873 39177803 2.300000e-12 84.2
61 TraesCS5B01G514700 chr2A 97.826 46 1 0 2054 2099 608647274 608647319 2.980000e-11 80.5
62 TraesCS5B01G514700 chr2A 95.833 48 2 0 2052 2099 608647360 608647313 1.070000e-10 78.7
63 TraesCS5B01G514700 chr6B 100.000 49 0 0 2051 2099 674566013 674565965 1.370000e-14 91.6
64 TraesCS5B01G514700 chr1B 91.176 68 4 2 2053 2118 513163334 513163267 1.370000e-14 91.6
65 TraesCS5B01G514700 chr2B 79.070 129 21 5 240 365 554912615 554912740 2.300000e-12 84.2
66 TraesCS5B01G514700 chr5A 97.826 46 1 0 2054 2099 564602301 564602346 2.980000e-11 80.5
67 TraesCS5B01G514700 chr2D 79.167 120 21 4 240 357 509759823 509759940 2.980000e-11 80.5
68 TraesCS5B01G514700 chr3D 94.118 51 3 0 2049 2099 25130778 25130728 1.070000e-10 78.7
69 TraesCS5B01G514700 chr3B 91.228 57 5 0 3315 3371 669829899 669829843 1.070000e-10 78.7
70 TraesCS5B01G514700 chr3B 91.071 56 5 0 3315 3370 669855143 669855088 3.850000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G514700 chr5B 679557238 679560833 3595 True 6641.000000 6641 100.000000 1 3596 1 chr5B.!!$R2 3595
1 TraesCS5B01G514700 chr5B 679672070 679673267 1197 False 935.000000 935 81.494000 875 2056 1 chr5B.!!$F1 1181
2 TraesCS5B01G514700 chr5B 679401589 679405435 3846 True 511.333333 1099 86.639000 896 3315 3 chr5B.!!$R3 2419
3 TraesCS5B01G514700 chr5D 538416425 538417272 847 True 937.000000 937 87.018000 999 1831 1 chr5D.!!$R1 832
4 TraesCS5B01G514700 chr5D 538655373 538656896 1523 False 794.500000 1075 87.449500 896 2666 2 chr5D.!!$F4 1770
5 TraesCS5B01G514700 chr5D 538621569 538623138 1569 False 783.500000 1042 87.722500 1000 2645 2 chr5D.!!$F3 1645
6 TraesCS5B01G514700 chr5D 538439093 538442395 3302 True 711.600000 1707 92.143400 868 3596 5 chr5D.!!$R4 2728
7 TraesCS5B01G514700 chr5D 538423358 538425235 1877 True 655.000000 1253 88.255000 1000 2858 3 chr5D.!!$R3 1858
8 TraesCS5B01G514700 chr5D 538524768 538525471 703 True 619.000000 619 83.003000 1 687 1 chr5D.!!$R2 686
9 TraesCS5B01G514700 chr4A 631475847 631478540 2693 False 773.000000 1637 88.636500 875 3588 4 chr4A.!!$F4 2713
10 TraesCS5B01G514700 chr4A 631494246 631502035 7789 False 624.250000 1057 87.106250 1000 3274 4 chr4A.!!$F5 2274
11 TraesCS5B01G514700 chr4A 631507116 631507711 595 False 588.000000 588 84.839000 896 1499 1 chr4A.!!$F1 603
12 TraesCS5B01G514700 chr4A 630897260 630899319 2059 True 566.000000 963 79.648000 896 3132 2 chr4A.!!$R4 2236
13 TraesCS5B01G514700 chr4A 630876126 630878227 2101 True 420.000000 625 84.362667 885 2928 3 chr4A.!!$R3 2043
14 TraesCS5B01G514700 chrUn 67361406 67363390 1984 True 599.000000 1037 82.654500 1000 2934 2 chrUn.!!$R1 1934
15 TraesCS5B01G514700 chr1D 6384912 6386263 1351 True 570.000000 902 89.863667 2264 3596 3 chr1D.!!$R2 1332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 870 0.036022 AGAGTTTGGCACAGAGGCTC 59.964 55.0 6.34 6.34 42.39 4.70 F
854 874 0.036732 TTTGGCACAGAGGCTCGAAT 59.963 50.0 9.22 0.00 42.39 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 8280 0.313672 GGCGCATTTGGAACACAAGA 59.686 50.0 10.83 0.0 40.82 3.02 R
2622 9111 0.469917 AATGTACCTGCCCTCCGATG 59.530 55.0 0.00 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.530875 AGCTCTTTGGTTCATAGGAATGG 58.469 43.478 0.00 0.00 35.05 3.16
27 28 4.578105 GCTCTTTGGTTCATAGGAATGGAG 59.422 45.833 0.00 0.00 35.05 3.86
29 30 6.139679 TCTTTGGTTCATAGGAATGGAGTT 57.860 37.500 0.00 0.00 35.05 3.01
35 36 7.872138 TGGTTCATAGGAATGGAGTTCTATTT 58.128 34.615 0.00 0.00 37.01 1.40
36 37 7.775093 TGGTTCATAGGAATGGAGTTCTATTTG 59.225 37.037 0.00 0.00 37.01 2.32
44 45 8.432805 AGGAATGGAGTTCTATTTGTACATAGG 58.567 37.037 0.00 0.00 37.01 2.57
48 49 9.784531 ATGGAGTTCTATTTGTACATAGGATTG 57.215 33.333 0.00 0.00 0.00 2.67
104 106 7.678947 AAACATGAGTCTAGACCAATGAAAG 57.321 36.000 28.95 12.62 32.27 2.62
142 144 9.060347 TGTGAAGCAAATGATATCTCTATTTCC 57.940 33.333 3.98 0.00 0.00 3.13
176 178 9.761504 CTCATAGAGTTTGAGATACATGTCATT 57.238 33.333 0.00 0.00 42.63 2.57
186 188 9.904198 TTGAGATACATGTCATTTCATTTCCTA 57.096 29.630 0.00 0.00 29.66 2.94
226 228 8.580720 CCTATGATAATCCTATCCTATGAACCG 58.419 40.741 0.00 0.00 34.10 4.44
252 254 2.070039 CCTAAGGGCACGGGGATCA 61.070 63.158 0.00 0.00 0.00 2.92
253 255 1.447643 CTAAGGGCACGGGGATCAG 59.552 63.158 0.00 0.00 0.00 2.90
255 257 1.335132 TAAGGGCACGGGGATCAGTC 61.335 60.000 0.00 0.00 0.00 3.51
256 258 4.176752 GGGCACGGGGATCAGTCC 62.177 72.222 0.00 0.00 44.29 3.85
271 291 2.589540 TCCACGGACATGGATGCC 59.410 61.111 0.00 0.00 44.14 4.40
273 293 2.896854 CACGGACATGGATGCCGG 60.897 66.667 19.63 0.00 45.27 6.13
278 298 3.405093 GACATGGATGCCGGAGCCA 62.405 63.158 5.05 9.80 38.69 4.75
288 308 2.515523 CGGAGCCAGCCATCCAAG 60.516 66.667 0.00 0.00 35.14 3.61
289 309 3.001514 GGAGCCAGCCATCCAAGA 58.998 61.111 0.00 0.00 35.54 3.02
293 313 0.543749 AGCCAGCCATCCAAGACTAC 59.456 55.000 0.00 0.00 0.00 2.73
296 316 0.179073 CAGCCATCCAAGACTACCCG 60.179 60.000 0.00 0.00 0.00 5.28
303 323 2.394632 TCCAAGACTACCCGCATACAT 58.605 47.619 0.00 0.00 0.00 2.29
305 325 3.199071 TCCAAGACTACCCGCATACATTT 59.801 43.478 0.00 0.00 0.00 2.32
314 334 5.452078 ACCCGCATACATTTCAAATATGG 57.548 39.130 0.00 0.00 0.00 2.74
349 369 3.550561 GACGAAATTCATGCAAACACGA 58.449 40.909 0.00 0.00 0.00 4.35
351 371 3.242903 ACGAAATTCATGCAAACACGACA 60.243 39.130 0.00 0.00 0.00 4.35
364 384 6.636447 TGCAAACACGACAGATTTCATTAAAG 59.364 34.615 0.00 0.00 0.00 1.85
365 385 6.398935 GCAAACACGACAGATTTCATTAAAGC 60.399 38.462 0.00 0.00 0.00 3.51
377 397 9.125026 AGATTTCATTAAAGCTCGGACATAATT 57.875 29.630 0.00 0.00 36.64 1.40
389 409 8.612619 AGCTCGGACATAATTTACATAAAACAG 58.387 33.333 0.00 0.00 0.00 3.16
439 459 9.551734 AAAACTAACTAAAACCTACACAGTAGG 57.448 33.333 19.01 19.01 40.49 3.18
447 467 2.158204 ACCTACACAGTAGGACCACCTT 60.158 50.000 25.53 2.90 45.36 3.50
451 471 2.631545 ACACAGTAGGACCACCTTGTAC 59.368 50.000 0.00 0.00 45.36 2.90
453 473 1.891150 CAGTAGGACCACCTTGTACGT 59.109 52.381 0.00 0.00 45.36 3.57
454 474 1.891150 AGTAGGACCACCTTGTACGTG 59.109 52.381 0.00 0.00 45.36 4.49
463 483 4.992511 TTGTACGTGTGGCCGCCC 62.993 66.667 15.15 0.00 0.00 6.13
465 485 3.762247 GTACGTGTGGCCGCCCTA 61.762 66.667 15.15 0.00 0.00 3.53
466 486 2.760799 TACGTGTGGCCGCCCTAT 60.761 61.111 15.15 0.00 0.00 2.57
474 494 3.958860 GCCGCCCTATCCTGCCAT 61.959 66.667 0.00 0.00 0.00 4.40
482 502 0.959553 CTATCCTGCCATACGACCGT 59.040 55.000 0.00 0.00 0.00 4.83
491 511 0.526739 CATACGACCGTCGCCATTCA 60.527 55.000 20.67 0.16 45.12 2.57
495 515 1.358725 CGACCGTCGCCATTCATGTT 61.359 55.000 8.21 0.00 31.14 2.71
503 523 2.419673 TCGCCATTCATGTTGTCATCAC 59.580 45.455 0.00 0.00 31.15 3.06
510 530 6.406512 CCATTCATGTTGTCATCACCATCATT 60.407 38.462 0.00 0.00 31.15 2.57
511 531 5.570234 TCATGTTGTCATCACCATCATTG 57.430 39.130 0.00 0.00 31.15 2.82
513 533 5.477637 TCATGTTGTCATCACCATCATTGTT 59.522 36.000 0.00 0.00 31.15 2.83
520 540 4.218200 TCATCACCATCATTGTTGTTGTCC 59.782 41.667 0.00 0.00 0.00 4.02
522 542 2.627221 CACCATCATTGTTGTTGTCCCA 59.373 45.455 0.00 0.00 0.00 4.37
524 544 2.892852 CCATCATTGTTGTTGTCCCACT 59.107 45.455 0.00 0.00 0.00 4.00
526 546 4.156556 CCATCATTGTTGTTGTCCCACTAG 59.843 45.833 0.00 0.00 0.00 2.57
530 550 1.302192 TTGTTGTCCCACTAGCGGC 60.302 57.895 0.00 0.00 0.00 6.53
532 552 2.992689 TTGTCCCACTAGCGGCGA 60.993 61.111 12.98 0.00 0.00 5.54
539 559 2.100631 CACTAGCGGCGAAAGGGTG 61.101 63.158 12.98 7.77 0.00 4.61
540 560 2.264794 CTAGCGGCGAAAGGGTGT 59.735 61.111 12.98 0.00 0.00 4.16
541 561 1.375523 CTAGCGGCGAAAGGGTGTT 60.376 57.895 12.98 0.00 0.00 3.32
542 562 0.108520 CTAGCGGCGAAAGGGTGTTA 60.109 55.000 12.98 0.00 0.00 2.41
545 565 0.952010 GCGGCGAAAGGGTGTTAGAA 60.952 55.000 12.98 0.00 0.00 2.10
548 568 0.803117 GCGAAAGGGTGTTAGAAGGC 59.197 55.000 0.00 0.00 0.00 4.35
549 569 1.610886 GCGAAAGGGTGTTAGAAGGCT 60.611 52.381 0.00 0.00 0.00 4.58
551 571 2.437413 GAAAGGGTGTTAGAAGGCTGG 58.563 52.381 0.00 0.00 0.00 4.85
567 587 1.148273 TGGGACAGACTTGTGTGGC 59.852 57.895 3.07 0.00 37.76 5.01
569 589 1.961277 GGACAGACTTGTGTGGCGG 60.961 63.158 3.07 0.00 37.76 6.13
570 590 2.591715 ACAGACTTGTGTGGCGGC 60.592 61.111 0.00 0.00 35.83 6.53
571 591 2.281070 CAGACTTGTGTGGCGGCT 60.281 61.111 11.43 0.00 0.00 5.52
572 592 2.281070 AGACTTGTGTGGCGGCTG 60.281 61.111 11.43 0.00 0.00 4.85
573 593 2.591715 GACTTGTGTGGCGGCTGT 60.592 61.111 11.43 0.00 0.00 4.40
574 594 2.591715 ACTTGTGTGGCGGCTGTC 60.592 61.111 11.43 0.00 0.00 3.51
575 595 2.281070 CTTGTGTGGCGGCTGTCT 60.281 61.111 11.43 0.00 0.00 3.41
576 596 2.591429 TTGTGTGGCGGCTGTCTG 60.591 61.111 11.43 0.00 0.00 3.51
577 597 4.624364 TGTGTGGCGGCTGTCTGG 62.624 66.667 11.43 0.00 0.00 3.86
587 607 4.056125 CTGTCTGGCGCTCGTGGA 62.056 66.667 7.64 0.00 0.00 4.02
588 608 3.978723 CTGTCTGGCGCTCGTGGAG 62.979 68.421 7.64 0.00 0.00 3.86
589 609 4.803426 GTCTGGCGCTCGTGGAGG 62.803 72.222 7.64 0.00 0.00 4.30
591 611 4.504916 CTGGCGCTCGTGGAGGAG 62.505 72.222 7.64 0.00 37.11 3.69
597 617 3.764466 CTCGTGGAGGAGCCGCTT 61.764 66.667 0.00 0.00 45.27 4.68
598 618 3.302347 CTCGTGGAGGAGCCGCTTT 62.302 63.158 0.00 0.00 45.27 3.51
599 619 3.121030 CGTGGAGGAGCCGCTTTG 61.121 66.667 0.00 0.00 45.27 2.77
600 620 3.435186 GTGGAGGAGCCGCTTTGC 61.435 66.667 0.00 0.00 44.03 3.68
601 621 4.722700 TGGAGGAGCCGCTTTGCC 62.723 66.667 0.00 0.00 40.66 4.52
602 622 4.416738 GGAGGAGCCGCTTTGCCT 62.417 66.667 0.00 0.00 0.00 4.75
603 623 2.821810 GAGGAGCCGCTTTGCCTC 60.822 66.667 10.09 10.09 40.04 4.70
604 624 4.416738 AGGAGCCGCTTTGCCTCC 62.417 66.667 0.00 6.71 34.61 4.30
605 625 4.416738 GGAGCCGCTTTGCCTCCT 62.417 66.667 0.00 0.00 0.00 3.69
606 626 2.821810 GAGCCGCTTTGCCTCCTC 60.822 66.667 0.00 0.00 0.00 3.71
607 627 4.416738 AGCCGCTTTGCCTCCTCC 62.417 66.667 0.00 0.00 0.00 4.30
608 628 4.416738 GCCGCTTTGCCTCCTCCT 62.417 66.667 0.00 0.00 0.00 3.69
609 629 2.437359 CCGCTTTGCCTCCTCCTG 60.437 66.667 0.00 0.00 0.00 3.86
610 630 3.130160 CGCTTTGCCTCCTCCTGC 61.130 66.667 0.00 0.00 0.00 4.85
611 631 2.034687 GCTTTGCCTCCTCCTGCA 59.965 61.111 0.00 0.00 35.27 4.41
612 632 2.338785 GCTTTGCCTCCTCCTGCAC 61.339 63.158 0.00 0.00 37.18 4.57
613 633 2.032528 TTTGCCTCCTCCTGCACG 59.967 61.111 0.00 0.00 37.18 5.34
614 634 3.551496 TTTGCCTCCTCCTGCACGG 62.551 63.158 0.00 0.00 37.18 4.94
616 636 4.767255 GCCTCCTCCTGCACGGTG 62.767 72.222 3.15 3.15 0.00 4.94
617 637 3.314331 CCTCCTCCTGCACGGTGT 61.314 66.667 10.24 0.00 0.00 4.16
618 638 2.047844 CTCCTCCTGCACGGTGTG 60.048 66.667 10.24 3.35 36.51 3.82
619 639 3.596066 CTCCTCCTGCACGGTGTGG 62.596 68.421 10.24 12.19 33.64 4.17
620 640 3.625897 CCTCCTGCACGGTGTGGA 61.626 66.667 18.73 18.73 33.64 4.02
640 660 4.143333 GCCGCCGCACCTAGAGAA 62.143 66.667 0.00 0.00 34.03 2.87
641 661 2.105128 CCGCCGCACCTAGAGAAG 59.895 66.667 0.00 0.00 0.00 2.85
642 662 2.415608 CCGCCGCACCTAGAGAAGA 61.416 63.158 0.00 0.00 0.00 2.87
643 663 1.226717 CGCCGCACCTAGAGAAGAC 60.227 63.158 0.00 0.00 0.00 3.01
644 664 1.226717 GCCGCACCTAGAGAAGACG 60.227 63.158 0.00 0.00 0.00 4.18
645 665 1.433879 CCGCACCTAGAGAAGACGG 59.566 63.158 0.00 0.00 32.27 4.79
646 666 1.226717 CGCACCTAGAGAAGACGGC 60.227 63.158 0.00 0.00 0.00 5.68
647 667 1.226717 GCACCTAGAGAAGACGGCG 60.227 63.158 4.80 4.80 0.00 6.46
648 668 1.226717 CACCTAGAGAAGACGGCGC 60.227 63.158 6.90 0.00 0.00 6.53
649 669 2.413765 CCTAGAGAAGACGGCGCC 59.586 66.667 19.07 19.07 0.00 6.53
650 670 2.413765 CTAGAGAAGACGGCGCCC 59.586 66.667 23.46 7.92 0.00 6.13
673 693 4.235762 GCTCCATCGGCGGCCTTA 62.236 66.667 18.34 5.34 0.00 2.69
674 694 2.280186 CTCCATCGGCGGCCTTAC 60.280 66.667 18.34 0.00 0.00 2.34
675 695 2.762459 TCCATCGGCGGCCTTACT 60.762 61.111 18.34 0.00 0.00 2.24
676 696 2.588877 CCATCGGCGGCCTTACTG 60.589 66.667 18.34 8.53 0.00 2.74
684 704 2.439156 GGCCTTACTGCAGCCAGG 60.439 66.667 22.42 22.42 46.34 4.45
685 705 2.439156 GCCTTACTGCAGCCAGGG 60.439 66.667 25.96 19.23 43.53 4.45
686 706 3.081554 CCTTACTGCAGCCAGGGT 58.918 61.111 19.98 1.86 43.53 4.34
687 707 1.910580 GCCTTACTGCAGCCAGGGTA 61.911 60.000 25.96 5.65 43.53 3.69
688 708 0.618458 CCTTACTGCAGCCAGGGTAA 59.382 55.000 19.98 8.44 43.53 2.85
689 709 1.679032 CCTTACTGCAGCCAGGGTAAC 60.679 57.143 19.98 0.00 43.53 2.50
690 710 1.003118 CTTACTGCAGCCAGGGTAACA 59.997 52.381 15.27 0.00 43.53 2.41
691 711 0.613260 TACTGCAGCCAGGGTAACAG 59.387 55.000 15.27 16.03 43.53 3.16
692 712 1.376466 CTGCAGCCAGGGTAACAGT 59.624 57.895 0.00 0.00 35.38 3.55
693 713 0.250901 CTGCAGCCAGGGTAACAGTT 60.251 55.000 0.00 0.00 35.38 3.16
694 714 0.537143 TGCAGCCAGGGTAACAGTTG 60.537 55.000 0.00 0.00 39.74 3.16
695 715 0.537371 GCAGCCAGGGTAACAGTTGT 60.537 55.000 0.00 0.00 39.74 3.32
696 716 1.238439 CAGCCAGGGTAACAGTTGTG 58.762 55.000 0.00 0.00 39.74 3.33
697 717 0.843984 AGCCAGGGTAACAGTTGTGT 59.156 50.000 0.00 0.00 39.19 3.72
699 719 2.028876 GCCAGGGTAACAGTTGTGTTT 58.971 47.619 0.00 0.00 45.00 2.83
700 720 2.034179 GCCAGGGTAACAGTTGTGTTTC 59.966 50.000 0.00 0.00 45.00 2.78
701 721 3.283751 CCAGGGTAACAGTTGTGTTTCA 58.716 45.455 0.00 0.00 45.00 2.69
702 722 3.697045 CCAGGGTAACAGTTGTGTTTCAA 59.303 43.478 0.00 0.00 45.00 2.69
703 723 4.202010 CCAGGGTAACAGTTGTGTTTCAAG 60.202 45.833 0.00 0.00 45.00 3.02
704 724 4.638421 CAGGGTAACAGTTGTGTTTCAAGA 59.362 41.667 0.00 0.00 45.00 3.02
705 725 5.299279 CAGGGTAACAGTTGTGTTTCAAGAT 59.701 40.000 0.00 0.00 45.00 2.40
706 726 5.531287 AGGGTAACAGTTGTGTTTCAAGATC 59.469 40.000 0.00 0.00 45.00 2.75
707 727 5.278315 GGGTAACAGTTGTGTTTCAAGATCC 60.278 44.000 0.00 0.00 45.00 3.36
708 728 5.298276 GGTAACAGTTGTGTTTCAAGATCCA 59.702 40.000 0.00 0.00 45.00 3.41
709 729 5.913137 AACAGTTGTGTTTCAAGATCCAA 57.087 34.783 0.00 0.00 45.00 3.53
710 730 6.469782 AACAGTTGTGTTTCAAGATCCAAT 57.530 33.333 0.00 0.00 45.00 3.16
711 731 6.469782 ACAGTTGTGTTTCAAGATCCAATT 57.530 33.333 0.00 0.00 36.66 2.32
712 732 7.581213 ACAGTTGTGTTTCAAGATCCAATTA 57.419 32.000 0.00 0.00 36.66 1.40
713 733 8.181904 ACAGTTGTGTTTCAAGATCCAATTAT 57.818 30.769 0.00 0.00 36.66 1.28
714 734 9.295825 ACAGTTGTGTTTCAAGATCCAATTATA 57.704 29.630 0.00 0.00 36.66 0.98
717 737 9.736023 GTTGTGTTTCAAGATCCAATTATATCC 57.264 33.333 0.00 0.00 36.66 2.59
718 738 8.463930 TGTGTTTCAAGATCCAATTATATCCC 57.536 34.615 0.00 0.00 0.00 3.85
719 739 7.228507 TGTGTTTCAAGATCCAATTATATCCCG 59.771 37.037 0.00 0.00 0.00 5.14
720 740 7.444183 GTGTTTCAAGATCCAATTATATCCCGA 59.556 37.037 0.00 0.00 0.00 5.14
721 741 7.996066 TGTTTCAAGATCCAATTATATCCCGAA 59.004 33.333 0.00 0.00 0.00 4.30
722 742 9.014297 GTTTCAAGATCCAATTATATCCCGAAT 57.986 33.333 0.00 0.00 0.00 3.34
723 743 8.792830 TTCAAGATCCAATTATATCCCGAATC 57.207 34.615 0.00 0.00 0.00 2.52
724 744 8.150827 TCAAGATCCAATTATATCCCGAATCT 57.849 34.615 0.00 0.00 0.00 2.40
725 745 9.267071 TCAAGATCCAATTATATCCCGAATCTA 57.733 33.333 0.00 0.00 0.00 1.98
726 746 9.539825 CAAGATCCAATTATATCCCGAATCTAG 57.460 37.037 0.00 0.00 0.00 2.43
727 747 8.846423 AGATCCAATTATATCCCGAATCTAGT 57.154 34.615 0.00 0.00 0.00 2.57
728 748 9.273137 AGATCCAATTATATCCCGAATCTAGTT 57.727 33.333 0.00 0.00 0.00 2.24
731 751 8.464404 TCCAATTATATCCCGAATCTAGTTACG 58.536 37.037 0.00 0.00 0.00 3.18
732 752 8.464404 CCAATTATATCCCGAATCTAGTTACGA 58.536 37.037 0.00 0.00 0.00 3.43
733 753 9.504710 CAATTATATCCCGAATCTAGTTACGAG 57.495 37.037 0.00 0.00 0.00 4.18
734 754 9.458727 AATTATATCCCGAATCTAGTTACGAGA 57.541 33.333 0.00 0.00 0.00 4.04
735 755 6.740411 ATATCCCGAATCTAGTTACGAGAC 57.260 41.667 0.00 0.00 0.00 3.36
736 756 2.868583 TCCCGAATCTAGTTACGAGACG 59.131 50.000 0.00 0.00 0.00 4.18
737 757 2.611292 CCCGAATCTAGTTACGAGACGT 59.389 50.000 0.00 0.00 44.35 4.34
738 758 3.545624 CCCGAATCTAGTTACGAGACGTG 60.546 52.174 0.00 0.00 41.39 4.49
739 759 3.308053 CCGAATCTAGTTACGAGACGTGA 59.692 47.826 0.00 0.00 41.39 4.35
740 760 4.507134 CGAATCTAGTTACGAGACGTGAG 58.493 47.826 0.00 0.00 41.39 3.51
741 761 4.267214 CGAATCTAGTTACGAGACGTGAGA 59.733 45.833 0.00 5.15 41.39 3.27
742 762 5.220359 CGAATCTAGTTACGAGACGTGAGAA 60.220 44.000 0.00 0.00 41.39 2.87
743 763 5.721876 ATCTAGTTACGAGACGTGAGAAG 57.278 43.478 0.00 0.35 41.39 2.85
744 764 4.814147 TCTAGTTACGAGACGTGAGAAGA 58.186 43.478 0.00 2.50 41.39 2.87
745 765 5.233225 TCTAGTTACGAGACGTGAGAAGAA 58.767 41.667 0.00 0.00 41.39 2.52
746 766 4.825546 AGTTACGAGACGTGAGAAGAAA 57.174 40.909 0.00 0.00 41.39 2.52
747 767 5.373981 AGTTACGAGACGTGAGAAGAAAT 57.626 39.130 0.00 0.00 41.39 2.17
748 768 5.770417 AGTTACGAGACGTGAGAAGAAATT 58.230 37.500 0.00 0.00 41.39 1.82
749 769 6.906659 AGTTACGAGACGTGAGAAGAAATTA 58.093 36.000 0.00 0.00 41.39 1.40
750 770 7.022384 AGTTACGAGACGTGAGAAGAAATTAG 58.978 38.462 0.00 0.00 41.39 1.73
751 771 4.167268 ACGAGACGTGAGAAGAAATTAGC 58.833 43.478 0.00 0.00 39.18 3.09
752 772 3.238570 CGAGACGTGAGAAGAAATTAGCG 59.761 47.826 0.00 0.00 0.00 4.26
753 773 3.512680 AGACGTGAGAAGAAATTAGCGG 58.487 45.455 0.00 0.00 0.00 5.52
754 774 3.192844 AGACGTGAGAAGAAATTAGCGGA 59.807 43.478 0.00 0.00 0.00 5.54
755 775 4.113354 GACGTGAGAAGAAATTAGCGGAT 58.887 43.478 0.00 0.00 0.00 4.18
756 776 4.504858 ACGTGAGAAGAAATTAGCGGATT 58.495 39.130 0.00 0.00 0.00 3.01
757 777 4.935808 ACGTGAGAAGAAATTAGCGGATTT 59.064 37.500 0.00 0.76 32.16 2.17
758 778 6.103997 ACGTGAGAAGAAATTAGCGGATTTA 58.896 36.000 0.00 0.00 29.75 1.40
759 779 6.592607 ACGTGAGAAGAAATTAGCGGATTTAA 59.407 34.615 0.00 0.00 29.75 1.52
760 780 7.280205 ACGTGAGAAGAAATTAGCGGATTTAAT 59.720 33.333 0.00 0.00 29.75 1.40
761 781 8.122952 CGTGAGAAGAAATTAGCGGATTTAATT 58.877 33.333 1.13 0.00 33.37 1.40
762 782 9.439537 GTGAGAAGAAATTAGCGGATTTAATTC 57.560 33.333 12.36 12.36 31.36 2.17
763 783 9.173021 TGAGAAGAAATTAGCGGATTTAATTCA 57.827 29.630 17.48 10.50 32.56 2.57
775 795 8.504005 AGCGGATTTAATTCAATATCGTAAAGG 58.496 33.333 8.42 0.00 0.00 3.11
776 796 8.287503 GCGGATTTAATTCAATATCGTAAAGGT 58.712 33.333 8.42 0.00 0.00 3.50
777 797 9.594038 CGGATTTAATTCAATATCGTAAAGGTG 57.406 33.333 0.20 0.00 0.00 4.00
784 804 9.661563 AATTCAATATCGTAAAGGTGTTGTAGA 57.338 29.630 0.00 0.00 0.00 2.59
785 805 9.832445 ATTCAATATCGTAAAGGTGTTGTAGAT 57.168 29.630 0.00 0.00 0.00 1.98
840 860 7.631717 AATAGGTCTCATTTTAGAGTTTGGC 57.368 36.000 0.00 0.00 36.97 4.52
841 861 4.985538 AGGTCTCATTTTAGAGTTTGGCA 58.014 39.130 0.00 0.00 36.97 4.92
842 862 4.762251 AGGTCTCATTTTAGAGTTTGGCAC 59.238 41.667 0.00 0.00 36.97 5.01
843 863 4.518970 GGTCTCATTTTAGAGTTTGGCACA 59.481 41.667 0.00 0.00 36.97 4.57
844 864 5.335191 GGTCTCATTTTAGAGTTTGGCACAG 60.335 44.000 0.00 0.00 36.90 3.66
845 865 5.470098 GTCTCATTTTAGAGTTTGGCACAGA 59.530 40.000 0.00 0.00 36.90 3.41
846 866 5.702670 TCTCATTTTAGAGTTTGGCACAGAG 59.297 40.000 0.00 0.00 36.90 3.35
847 867 4.761739 TCATTTTAGAGTTTGGCACAGAGG 59.238 41.667 0.00 0.00 42.39 3.69
848 868 2.185004 TTAGAGTTTGGCACAGAGGC 57.815 50.000 0.00 0.00 42.39 4.70
849 869 1.352083 TAGAGTTTGGCACAGAGGCT 58.648 50.000 0.00 0.00 42.39 4.58
850 870 0.036022 AGAGTTTGGCACAGAGGCTC 59.964 55.000 6.34 6.34 42.39 4.70
851 871 1.294659 GAGTTTGGCACAGAGGCTCG 61.295 60.000 9.22 6.83 42.39 5.03
852 872 1.301716 GTTTGGCACAGAGGCTCGA 60.302 57.895 9.22 0.00 42.39 4.04
853 873 0.884704 GTTTGGCACAGAGGCTCGAA 60.885 55.000 9.22 0.00 42.39 3.71
854 874 0.036732 TTTGGCACAGAGGCTCGAAT 59.963 50.000 9.22 0.00 42.39 3.34
855 875 0.036732 TTGGCACAGAGGCTCGAATT 59.963 50.000 9.22 0.00 42.39 2.17
856 876 0.036732 TGGCACAGAGGCTCGAATTT 59.963 50.000 9.22 0.00 44.55 1.82
857 877 1.168714 GGCACAGAGGCTCGAATTTT 58.831 50.000 9.22 0.00 40.24 1.82
858 878 2.290008 TGGCACAGAGGCTCGAATTTTA 60.290 45.455 9.22 0.00 44.55 1.52
859 879 2.945668 GGCACAGAGGCTCGAATTTTAT 59.054 45.455 9.22 0.00 40.24 1.40
860 880 3.002759 GGCACAGAGGCTCGAATTTTATC 59.997 47.826 9.22 0.00 40.24 1.75
861 881 3.302740 GCACAGAGGCTCGAATTTTATCG 60.303 47.826 9.22 0.00 44.04 2.92
862 882 2.866762 ACAGAGGCTCGAATTTTATCGC 59.133 45.455 9.22 0.00 42.44 4.58
863 883 2.221981 CAGAGGCTCGAATTTTATCGCC 59.778 50.000 9.22 0.04 42.44 5.54
864 884 1.531578 GAGGCTCGAATTTTATCGCCC 59.468 52.381 0.00 0.00 42.44 6.13
865 885 0.591659 GGCTCGAATTTTATCGCCCC 59.408 55.000 0.00 0.00 42.44 5.80
866 886 0.234884 GCTCGAATTTTATCGCCCCG 59.765 55.000 0.00 0.00 42.44 5.73
867 887 0.865769 CTCGAATTTTATCGCCCCGG 59.134 55.000 0.00 0.00 42.44 5.73
868 888 1.161563 TCGAATTTTATCGCCCCGGC 61.162 55.000 0.00 0.00 42.44 6.13
869 889 1.658114 GAATTTTATCGCCCCGGCC 59.342 57.895 0.00 0.00 37.98 6.13
870 890 2.125202 GAATTTTATCGCCCCGGCCG 62.125 60.000 21.04 21.04 37.98 6.13
871 891 2.897172 AATTTTATCGCCCCGGCCGT 62.897 55.000 26.12 6.67 37.98 5.68
872 892 2.897172 ATTTTATCGCCCCGGCCGTT 62.897 55.000 26.12 3.81 37.98 4.44
873 893 3.625348 TTTATCGCCCCGGCCGTTT 62.625 57.895 26.12 4.19 37.98 3.60
903 923 2.050144 GGAGATGAATCTAGGGCCACA 58.950 52.381 6.18 0.00 37.25 4.17
923 943 3.181407 ACATCACTTTTCCCCATTCCCTT 60.181 43.478 0.00 0.00 0.00 3.95
930 950 0.624500 TCCCCATTCCCTTCCTCCTG 60.625 60.000 0.00 0.00 0.00 3.86
932 952 1.298953 CCCATTCCCTTCCTCCTGAA 58.701 55.000 0.00 0.00 0.00 3.02
974 1010 1.032014 GCAAGAGCAGGAAAACACCA 58.968 50.000 0.00 0.00 41.58 4.17
1158 1231 1.519455 CAGGCCGGTTCGTCAGATC 60.519 63.158 1.90 0.00 0.00 2.75
1757 8081 1.761174 GGGTGGAGAGAGTTTGCCA 59.239 57.895 0.00 0.00 0.00 4.92
1911 8249 7.959109 CCACATTCAGTACGATTGCATATATTG 59.041 37.037 0.00 0.00 0.00 1.90
1938 8276 3.574284 TTCATGCGAAATTTCTGTGGG 57.426 42.857 15.92 1.49 0.00 4.61
1942 8280 4.220382 TCATGCGAAATTTCTGTGGGATTT 59.780 37.500 15.92 0.00 0.00 2.17
1984 8323 4.963276 TGCGATTCTTAAACATTCCTGG 57.037 40.909 0.00 0.00 0.00 4.45
2024 8364 2.339400 CGTACTCGTTAATGCGTTCGTT 59.661 45.455 8.21 0.00 0.00 3.85
2049 8389 6.721321 TGTCGAAACAATGGTCTTTAAGTTC 58.279 36.000 0.00 0.00 30.70 3.01
2062 8402 8.921205 TGGTCTTTAAGTTCATATACTACCTCC 58.079 37.037 0.00 0.00 0.00 4.30
2063 8403 8.921205 GGTCTTTAAGTTCATATACTACCTCCA 58.079 37.037 0.00 0.00 0.00 3.86
2068 8408 9.670442 TTAAGTTCATATACTACCTCCATTCCT 57.330 33.333 0.00 0.00 0.00 3.36
2070 8410 9.670442 AAGTTCATATACTACCTCCATTCCTAA 57.330 33.333 0.00 0.00 0.00 2.69
2071 8411 9.670442 AGTTCATATACTACCTCCATTCCTAAA 57.330 33.333 0.00 0.00 0.00 1.85
2080 8420 8.804204 ACTACCTCCATTCCTAAATATAAGACG 58.196 37.037 0.00 0.00 0.00 4.18
2081 8421 7.613551 ACCTCCATTCCTAAATATAAGACGT 57.386 36.000 0.00 0.00 0.00 4.34
2082 8422 8.030913 ACCTCCATTCCTAAATATAAGACGTT 57.969 34.615 0.00 0.00 0.00 3.99
2083 8423 7.931948 ACCTCCATTCCTAAATATAAGACGTTG 59.068 37.037 0.00 0.00 0.00 4.10
2084 8424 7.387948 CCTCCATTCCTAAATATAAGACGTTGG 59.612 40.741 0.00 0.00 0.00 3.77
2085 8425 7.221450 TCCATTCCTAAATATAAGACGTTGGG 58.779 38.462 0.00 0.00 0.00 4.12
2086 8426 6.430000 CCATTCCTAAATATAAGACGTTGGGG 59.570 42.308 0.00 0.00 0.00 4.96
2087 8427 4.964593 TCCTAAATATAAGACGTTGGGGC 58.035 43.478 0.00 0.00 0.00 5.80
2088 8428 4.409574 TCCTAAATATAAGACGTTGGGGCA 59.590 41.667 0.00 0.00 0.00 5.36
2089 8429 4.755123 CCTAAATATAAGACGTTGGGGCAG 59.245 45.833 0.00 0.00 0.00 4.85
2090 8430 3.926058 AATATAAGACGTTGGGGCAGT 57.074 42.857 0.00 0.00 0.00 4.40
2091 8431 3.926058 ATATAAGACGTTGGGGCAGTT 57.074 42.857 0.00 0.00 0.00 3.16
2092 8432 2.579410 ATAAGACGTTGGGGCAGTTT 57.421 45.000 0.00 0.00 0.00 2.66
2093 8433 3.706600 ATAAGACGTTGGGGCAGTTTA 57.293 42.857 0.00 0.00 0.00 2.01
2094 8434 2.351706 AAGACGTTGGGGCAGTTTAA 57.648 45.000 0.00 0.00 0.00 1.52
2095 8435 2.351706 AGACGTTGGGGCAGTTTAAA 57.648 45.000 0.00 0.00 0.00 1.52
2096 8436 2.871453 AGACGTTGGGGCAGTTTAAAT 58.129 42.857 0.00 0.00 0.00 1.40
2097 8437 3.227614 AGACGTTGGGGCAGTTTAAATT 58.772 40.909 0.00 0.00 0.00 1.82
2098 8438 4.400120 AGACGTTGGGGCAGTTTAAATTA 58.600 39.130 0.00 0.00 0.00 1.40
2099 8439 4.457949 AGACGTTGGGGCAGTTTAAATTAG 59.542 41.667 0.00 0.00 0.00 1.73
2100 8440 3.508402 ACGTTGGGGCAGTTTAAATTAGG 59.492 43.478 0.00 0.00 0.00 2.69
2101 8441 3.759618 CGTTGGGGCAGTTTAAATTAGGA 59.240 43.478 0.00 0.00 0.00 2.94
2102 8442 4.218852 CGTTGGGGCAGTTTAAATTAGGAA 59.781 41.667 0.00 0.00 0.00 3.36
2103 8443 5.105513 CGTTGGGGCAGTTTAAATTAGGAAT 60.106 40.000 0.00 0.00 0.00 3.01
2104 8444 5.930837 TGGGGCAGTTTAAATTAGGAATG 57.069 39.130 0.00 0.00 0.00 2.67
2105 8445 4.714308 TGGGGCAGTTTAAATTAGGAATGG 59.286 41.667 0.00 0.00 0.00 3.16
2106 8446 4.959839 GGGGCAGTTTAAATTAGGAATGGA 59.040 41.667 0.00 0.00 0.00 3.41
2107 8447 5.069119 GGGGCAGTTTAAATTAGGAATGGAG 59.931 44.000 0.00 0.00 0.00 3.86
2108 8448 5.069119 GGGCAGTTTAAATTAGGAATGGAGG 59.931 44.000 0.00 0.00 0.00 4.30
2109 8449 5.656859 GGCAGTTTAAATTAGGAATGGAGGT 59.343 40.000 0.00 0.00 0.00 3.85
2110 8450 6.831868 GGCAGTTTAAATTAGGAATGGAGGTA 59.168 38.462 0.00 0.00 0.00 3.08
2111 8451 7.013369 GGCAGTTTAAATTAGGAATGGAGGTAG 59.987 40.741 0.00 0.00 0.00 3.18
2112 8452 7.556635 GCAGTTTAAATTAGGAATGGAGGTAGT 59.443 37.037 0.00 0.00 0.00 2.73
2183 8524 5.720202 AGAGTCATTGCGTAGTATCAAACA 58.280 37.500 0.00 0.00 0.00 2.83
2185 8526 6.818644 AGAGTCATTGCGTAGTATCAAACATT 59.181 34.615 0.00 0.00 0.00 2.71
2186 8527 6.775088 AGTCATTGCGTAGTATCAAACATTG 58.225 36.000 0.00 0.00 0.00 2.82
2215 8556 9.581289 ACTATATCTGCCATATAGTATCAGACC 57.419 37.037 17.82 0.00 42.68 3.85
2272 8726 0.798776 CTAGGCTTGTTTGGACTGCG 59.201 55.000 0.00 0.00 0.00 5.18
2309 8763 6.529125 CACATAGTTTGCAGGAAATGATGTTC 59.471 38.462 11.94 0.00 33.01 3.18
2622 9111 4.022416 TGTGTGCTTCCAATACAATGTTCC 60.022 41.667 0.00 0.00 0.00 3.62
2757 9347 4.644685 ACATAACTGTTTTTCCAGCACTGT 59.355 37.500 0.00 0.00 35.83 3.55
2832 9437 2.012673 GAGATTTCGAGCATGGCAACT 58.987 47.619 0.00 0.00 37.61 3.16
2840 9445 5.888691 TCGAGCATGGCAACTTTATTTTA 57.111 34.783 0.00 0.00 37.61 1.52
2970 9695 5.564048 ACTCGTAGAAACTGTCAGGATAC 57.436 43.478 4.53 1.13 34.09 2.24
3034 11129 2.361119 TGCTTGTCTTACGTCAGTCAGT 59.639 45.455 0.00 0.00 0.00 3.41
3146 11821 9.755804 TGTCAAATATGTTTGTTTCTTATTGCA 57.244 25.926 13.78 0.00 44.03 4.08
3152 11827 9.762933 ATATGTTTGTTTCTTATTGCAGTTTGT 57.237 25.926 0.00 0.00 0.00 2.83
3153 11828 7.897575 TGTTTGTTTCTTATTGCAGTTTGTT 57.102 28.000 0.00 0.00 0.00 2.83
3154 11829 8.988064 TGTTTGTTTCTTATTGCAGTTTGTTA 57.012 26.923 0.00 0.00 0.00 2.41
3155 11830 9.081997 TGTTTGTTTCTTATTGCAGTTTGTTAG 57.918 29.630 0.00 0.00 0.00 2.34
3156 11831 9.296400 GTTTGTTTCTTATTGCAGTTTGTTAGA 57.704 29.630 0.00 0.00 0.00 2.10
3157 11832 9.515020 TTTGTTTCTTATTGCAGTTTGTTAGAG 57.485 29.630 0.00 0.00 0.00 2.43
3158 11833 8.445275 TGTTTCTTATTGCAGTTTGTTAGAGA 57.555 30.769 0.00 0.00 0.00 3.10
3186 11861 6.998968 AGAGAAGCAATTTCTTCGATGATT 57.001 33.333 11.43 0.00 46.12 2.57
3274 11958 7.553044 GTCAGTGTAGCAGGATTTTTAACCTAT 59.447 37.037 0.00 0.00 34.87 2.57
3312 11996 0.247736 AGATCGTGGTGCAGACCTTC 59.752 55.000 0.00 0.00 43.58 3.46
3315 11999 0.888619 TCGTGGTGCAGACCTTCTAG 59.111 55.000 0.00 0.00 43.58 2.43
3316 12000 0.737715 CGTGGTGCAGACCTTCTAGC 60.738 60.000 0.00 0.00 43.58 3.42
3317 12001 0.321671 GTGGTGCAGACCTTCTAGCA 59.678 55.000 0.00 0.00 43.58 3.49
3318 12002 1.065854 GTGGTGCAGACCTTCTAGCAT 60.066 52.381 0.00 0.00 43.58 3.79
3321 12005 3.084786 GGTGCAGACCTTCTAGCATTTT 58.915 45.455 0.00 0.00 39.47 1.82
3322 12006 3.507622 GGTGCAGACCTTCTAGCATTTTT 59.492 43.478 0.00 0.00 39.47 1.94
3323 12007 4.379918 GGTGCAGACCTTCTAGCATTTTTC 60.380 45.833 0.00 0.00 39.47 2.29
3325 12009 3.129462 GCAGACCTTCTAGCATTTTTCCC 59.871 47.826 0.00 0.00 0.00 3.97
3326 12010 3.696548 CAGACCTTCTAGCATTTTTCCCC 59.303 47.826 0.00 0.00 0.00 4.81
3327 12011 3.333680 AGACCTTCTAGCATTTTTCCCCA 59.666 43.478 0.00 0.00 0.00 4.96
3329 12013 3.026694 CCTTCTAGCATTTTTCCCCAGG 58.973 50.000 0.00 0.00 0.00 4.45
3330 12014 2.143876 TCTAGCATTTTTCCCCAGGC 57.856 50.000 0.00 0.00 0.00 4.85
3331 12015 1.357420 TCTAGCATTTTTCCCCAGGCA 59.643 47.619 0.00 0.00 0.00 4.75
3333 12017 1.197812 AGCATTTTTCCCCAGGCATC 58.802 50.000 0.00 0.00 0.00 3.91
3334 12018 0.903942 GCATTTTTCCCCAGGCATCA 59.096 50.000 0.00 0.00 0.00 3.07
3335 12019 1.278699 GCATTTTTCCCCAGGCATCAA 59.721 47.619 0.00 0.00 0.00 2.57
3336 12020 2.678769 GCATTTTTCCCCAGGCATCAAG 60.679 50.000 0.00 0.00 0.00 3.02
3337 12021 0.975887 TTTTTCCCCAGGCATCAAGC 59.024 50.000 0.00 0.00 44.65 4.01
3346 12030 2.870372 GCATCAAGCCGTGGACAC 59.130 61.111 0.00 0.00 37.23 3.67
3347 12031 1.965930 GCATCAAGCCGTGGACACA 60.966 57.895 3.12 0.00 37.23 3.72
3348 12032 1.514678 GCATCAAGCCGTGGACACAA 61.515 55.000 3.12 0.00 37.23 3.33
3349 12033 0.950836 CATCAAGCCGTGGACACAAA 59.049 50.000 3.12 0.00 0.00 2.83
3350 12034 0.951558 ATCAAGCCGTGGACACAAAC 59.048 50.000 3.12 0.00 0.00 2.93
3351 12035 1.098712 TCAAGCCGTGGACACAAACC 61.099 55.000 3.12 0.00 0.00 3.27
3352 12036 1.077357 AAGCCGTGGACACAAACCA 60.077 52.632 3.12 0.00 34.84 3.67
3353 12037 0.681564 AAGCCGTGGACACAAACCAA 60.682 50.000 3.12 0.00 39.22 3.67
3354 12038 0.681564 AGCCGTGGACACAAACCAAA 60.682 50.000 3.12 0.00 39.22 3.28
3355 12039 0.526739 GCCGTGGACACAAACCAAAC 60.527 55.000 3.12 0.00 39.22 2.93
3356 12040 1.099689 CCGTGGACACAAACCAAACT 58.900 50.000 3.12 0.00 39.22 2.66
3357 12041 2.290464 CCGTGGACACAAACCAAACTA 58.710 47.619 3.12 0.00 39.22 2.24
3358 12042 2.289547 CCGTGGACACAAACCAAACTAG 59.710 50.000 3.12 0.00 39.22 2.57
3359 12043 2.286772 CGTGGACACAAACCAAACTAGC 60.287 50.000 3.12 0.00 39.22 3.42
3360 12044 2.949644 GTGGACACAAACCAAACTAGCT 59.050 45.455 0.00 0.00 39.22 3.32
3361 12045 3.003378 GTGGACACAAACCAAACTAGCTC 59.997 47.826 0.00 0.00 39.22 4.09
3362 12046 3.118038 TGGACACAAACCAAACTAGCTCT 60.118 43.478 0.00 0.00 34.25 4.09
3385 12069 2.924757 TGCTTCTAGCCTGATGATGG 57.075 50.000 0.00 0.00 41.51 3.51
3387 12071 2.103771 TGCTTCTAGCCTGATGATGGTC 59.896 50.000 0.00 0.00 41.51 4.02
3388 12072 2.549778 GCTTCTAGCCTGATGATGGTCC 60.550 54.545 0.00 0.00 34.48 4.46
3433 12120 2.223805 CCTGTTTGTTTGAGGTGCCTTC 60.224 50.000 0.00 0.00 0.00 3.46
3496 12183 1.078848 GCTCGAGTGGGTGCTGAAT 60.079 57.895 15.13 0.00 0.00 2.57
3499 12186 1.751351 CTCGAGTGGGTGCTGAATAGA 59.249 52.381 3.62 0.00 0.00 1.98
3509 12196 7.781693 AGTGGGTGCTGAATAGATAAAATCATT 59.218 33.333 0.00 0.00 0.00 2.57
3580 12283 7.621428 ACATGTCTAAGTTTTCATGATGAGG 57.379 36.000 16.08 0.00 39.68 3.86
3583 12286 9.334947 CATGTCTAAGTTTTCATGATGAGGTAT 57.665 33.333 0.00 0.00 39.68 2.73
3591 12294 9.113838 AGTTTTCATGATGAGGTATGTTATGAC 57.886 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.779241 ACTCCATTCCTATGAACCAAAGA 57.221 39.130 0.00 0.00 33.37 2.52
25 26 9.614792 AACCAATCCTATGTACAAATAGAACTC 57.385 33.333 0.00 0.00 32.74 3.01
27 28 8.837389 GGAACCAATCCTATGTACAAATAGAAC 58.163 37.037 0.00 0.00 45.56 3.01
44 45 3.071874 TGTGATGGACTGGAACCAATC 57.928 47.619 0.00 0.00 40.93 2.67
48 49 3.420893 TGAAATGTGATGGACTGGAACC 58.579 45.455 0.00 0.00 0.00 3.62
55 56 7.967890 ATTTTTCCTTTGAAATGTGATGGAC 57.032 32.000 0.00 0.00 40.08 4.02
104 106 9.692749 ATCATTTGCTTCACATCATATGAATTC 57.307 29.630 9.99 0.00 35.44 2.17
110 112 9.961264 AGAGATATCATTTGCTTCACATCATAT 57.039 29.630 5.32 0.00 0.00 1.78
147 149 9.891828 GACATGTATCTCAAACTCTATGAGTAG 57.108 37.037 0.00 0.00 42.59 2.57
158 160 9.294030 GGAAATGAAATGACATGTATCTCAAAC 57.706 33.333 0.00 0.00 0.00 2.93
221 223 0.178301 CCTTAGGCCTCCTTCGGTTC 59.822 60.000 9.68 0.00 34.61 3.62
244 246 2.758327 TCCGTGGACTGATCCCCG 60.758 66.667 0.00 0.00 45.59 5.73
245 247 1.338136 ATGTCCGTGGACTGATCCCC 61.338 60.000 19.17 0.00 45.59 4.81
246 248 0.179073 CATGTCCGTGGACTGATCCC 60.179 60.000 19.17 0.00 45.59 3.85
247 249 0.179073 CCATGTCCGTGGACTGATCC 60.179 60.000 19.17 0.00 46.48 3.36
248 250 0.824109 TCCATGTCCGTGGACTGATC 59.176 55.000 19.17 0.00 43.20 2.92
250 252 4.531351 TCCATGTCCGTGGACTGA 57.469 55.556 19.17 10.60 43.20 3.41
255 257 2.896854 CGGCATCCATGTCCGTGG 60.897 66.667 11.85 0.00 40.25 4.94
256 258 2.896854 CCGGCATCCATGTCCGTG 60.897 66.667 16.22 8.16 42.09 4.94
257 259 3.080765 TCCGGCATCCATGTCCGT 61.081 61.111 16.22 0.00 42.09 4.69
271 291 2.515523 CTTGGATGGCTGGCTCCG 60.516 66.667 2.00 0.00 34.05 4.63
273 293 0.833287 TAGTCTTGGATGGCTGGCTC 59.167 55.000 2.00 0.00 0.00 4.70
278 298 1.972660 GCGGGTAGTCTTGGATGGCT 61.973 60.000 0.00 0.00 0.00 4.75
288 308 5.751243 ATTTGAAATGTATGCGGGTAGTC 57.249 39.130 0.00 0.00 0.00 2.59
289 309 6.206634 CCATATTTGAAATGTATGCGGGTAGT 59.793 38.462 0.00 0.00 0.00 2.73
293 313 5.452078 ACCATATTTGAAATGTATGCGGG 57.548 39.130 0.00 0.00 0.00 6.13
296 316 8.931385 AGTTGAACCATATTTGAAATGTATGC 57.069 30.769 0.00 0.00 0.00 3.14
303 323 8.047911 TCCGGTATAGTTGAACCATATTTGAAA 58.952 33.333 0.00 0.00 35.35 2.69
305 325 6.987992 GTCCGGTATAGTTGAACCATATTTGA 59.012 38.462 0.00 0.00 35.35 2.69
314 334 5.577945 TGAATTTCGTCCGGTATAGTTGAAC 59.422 40.000 0.00 0.00 0.00 3.18
323 343 2.388310 TGCATGAATTTCGTCCGGTA 57.612 45.000 0.00 0.00 0.00 4.02
349 369 5.245531 TGTCCGAGCTTTAATGAAATCTGT 58.754 37.500 0.00 0.00 0.00 3.41
351 371 8.682936 ATTATGTCCGAGCTTTAATGAAATCT 57.317 30.769 0.00 0.00 0.00 2.40
364 384 8.395633 ACTGTTTTATGTAAATTATGTCCGAGC 58.604 33.333 0.00 0.00 0.00 5.03
365 385 9.916397 GACTGTTTTATGTAAATTATGTCCGAG 57.084 33.333 0.00 0.00 0.00 4.63
426 446 1.432024 AGGTGGTCCTACTGTGTAGGT 59.568 52.381 19.47 1.24 43.12 3.08
431 451 2.352421 CGTACAAGGTGGTCCTACTGTG 60.352 54.545 0.00 0.00 44.35 3.66
434 454 1.891150 CACGTACAAGGTGGTCCTACT 59.109 52.381 0.00 0.00 44.35 2.57
436 456 1.614903 CACACGTACAAGGTGGTCCTA 59.385 52.381 4.93 0.00 44.35 2.94
438 458 0.601841 CCACACGTACAAGGTGGTCC 60.602 60.000 12.60 0.00 45.48 4.46
439 459 2.908817 CCACACGTACAAGGTGGTC 58.091 57.895 12.60 0.00 45.48 4.02
451 471 4.910585 GGATAGGGCGGCCACACG 62.911 72.222 31.59 0.00 0.00 4.49
453 473 3.479203 CAGGATAGGGCGGCCACA 61.479 66.667 31.59 18.02 0.00 4.17
454 474 4.937431 GCAGGATAGGGCGGCCAC 62.937 72.222 31.59 19.71 0.00 5.01
463 483 0.959553 ACGGTCGTATGGCAGGATAG 59.040 55.000 0.00 0.00 0.00 2.08
465 485 1.740285 GACGGTCGTATGGCAGGAT 59.260 57.895 0.00 0.00 0.00 3.24
466 486 2.767445 CGACGGTCGTATGGCAGGA 61.767 63.158 21.68 0.00 34.72 3.86
474 494 0.526739 CATGAATGGCGACGGTCGTA 60.527 55.000 28.75 19.47 42.81 3.43
482 502 2.419673 GTGATGACAACATGAATGGCGA 59.580 45.455 0.00 0.00 36.82 5.54
495 515 4.583907 ACAACAACAATGATGGTGATGACA 59.416 37.500 15.46 0.00 46.71 3.58
503 523 2.892852 AGTGGGACAACAACAATGATGG 59.107 45.455 0.00 0.00 44.16 3.51
510 530 0.250124 CCGCTAGTGGGACAACAACA 60.250 55.000 15.00 0.00 44.16 3.33
511 531 1.574702 GCCGCTAGTGGGACAACAAC 61.575 60.000 23.60 0.51 44.16 3.32
513 533 2.345991 GCCGCTAGTGGGACAACA 59.654 61.111 23.60 0.00 44.16 3.33
520 540 2.511600 CCCTTTCGCCGCTAGTGG 60.512 66.667 18.49 18.49 0.00 4.00
522 542 2.108278 AACACCCTTTCGCCGCTAGT 62.108 55.000 0.00 0.00 0.00 2.57
524 544 0.108520 CTAACACCCTTTCGCCGCTA 60.109 55.000 0.00 0.00 0.00 4.26
526 546 0.952010 TTCTAACACCCTTTCGCCGC 60.952 55.000 0.00 0.00 0.00 6.53
530 550 2.076863 CAGCCTTCTAACACCCTTTCG 58.923 52.381 0.00 0.00 0.00 3.46
532 552 1.075536 CCCAGCCTTCTAACACCCTTT 59.924 52.381 0.00 0.00 0.00 3.11
539 559 1.903183 AGTCTGTCCCAGCCTTCTAAC 59.097 52.381 0.00 0.00 0.00 2.34
540 560 2.303022 CAAGTCTGTCCCAGCCTTCTAA 59.697 50.000 0.00 0.00 26.54 2.10
541 561 1.902508 CAAGTCTGTCCCAGCCTTCTA 59.097 52.381 0.00 0.00 26.54 2.10
542 562 0.689623 CAAGTCTGTCCCAGCCTTCT 59.310 55.000 0.00 0.00 26.54 2.85
545 565 1.056700 ACACAAGTCTGTCCCAGCCT 61.057 55.000 0.00 0.00 31.64 4.58
548 568 0.886490 GCCACACAAGTCTGTCCCAG 60.886 60.000 0.00 0.00 31.64 4.45
549 569 1.148273 GCCACACAAGTCTGTCCCA 59.852 57.895 0.00 0.00 31.64 4.37
551 571 1.961277 CCGCCACACAAGTCTGTCC 60.961 63.158 0.00 0.00 31.64 4.02
570 590 3.978723 CTCCACGAGCGCCAGACAG 62.979 68.421 2.29 0.00 0.00 3.51
571 591 4.056125 CTCCACGAGCGCCAGACA 62.056 66.667 2.29 0.00 0.00 3.41
572 592 4.803426 CCTCCACGAGCGCCAGAC 62.803 72.222 2.29 0.00 0.00 3.51
574 594 4.504916 CTCCTCCACGAGCGCCAG 62.505 72.222 2.29 0.00 0.00 4.85
580 600 3.302347 AAAGCGGCTCCTCCACGAG 62.302 63.158 1.45 0.00 34.01 4.18
581 601 3.311110 AAAGCGGCTCCTCCACGA 61.311 61.111 1.45 0.00 34.01 4.35
582 602 3.121030 CAAAGCGGCTCCTCCACG 61.121 66.667 1.45 0.00 34.01 4.94
583 603 3.435186 GCAAAGCGGCTCCTCCAC 61.435 66.667 1.45 0.00 34.01 4.02
584 604 4.722700 GGCAAAGCGGCTCCTCCA 62.723 66.667 1.45 0.00 37.17 3.86
591 611 4.416738 AGGAGGAGGCAAAGCGGC 62.417 66.667 0.00 0.00 41.61 6.53
592 612 2.437359 CAGGAGGAGGCAAAGCGG 60.437 66.667 0.00 0.00 0.00 5.52
593 613 3.130160 GCAGGAGGAGGCAAAGCG 61.130 66.667 0.00 0.00 0.00 4.68
594 614 2.034687 TGCAGGAGGAGGCAAAGC 59.965 61.111 0.00 0.00 37.03 3.51
595 615 2.037136 CGTGCAGGAGGAGGCAAAG 61.037 63.158 0.00 0.00 42.45 2.77
596 616 2.032528 CGTGCAGGAGGAGGCAAA 59.967 61.111 0.00 0.00 42.45 3.68
597 617 4.020617 CCGTGCAGGAGGAGGCAA 62.021 66.667 8.24 0.00 45.00 4.52
599 619 4.767255 CACCGTGCAGGAGGAGGC 62.767 72.222 8.24 0.00 45.00 4.70
600 620 3.314331 ACACCGTGCAGGAGGAGG 61.314 66.667 8.24 3.29 45.00 4.30
601 621 2.047844 CACACCGTGCAGGAGGAG 60.048 66.667 8.24 3.38 45.00 3.69
602 622 3.625897 CCACACCGTGCAGGAGGA 61.626 66.667 8.24 0.00 45.00 3.71
603 623 3.596066 CTCCACACCGTGCAGGAGG 62.596 68.421 23.64 4.52 45.00 4.30
604 624 2.047844 CTCCACACCGTGCAGGAG 60.048 66.667 20.25 20.25 45.00 3.69
605 625 3.625897 CCTCCACACCGTGCAGGA 61.626 66.667 8.24 11.60 43.74 3.86
606 626 4.704833 CCCTCCACACCGTGCAGG 62.705 72.222 0.00 0.00 40.92 4.85
623 643 4.143333 TTCTCTAGGTGCGGCGGC 62.143 66.667 9.78 9.68 40.52 6.53
624 644 2.105128 CTTCTCTAGGTGCGGCGG 59.895 66.667 9.78 0.00 0.00 6.13
625 645 1.226717 GTCTTCTCTAGGTGCGGCG 60.227 63.158 0.51 0.51 0.00 6.46
626 646 1.226717 CGTCTTCTCTAGGTGCGGC 60.227 63.158 0.00 0.00 0.00 6.53
627 647 1.433879 CCGTCTTCTCTAGGTGCGG 59.566 63.158 0.00 0.00 0.00 5.69
628 648 1.226717 GCCGTCTTCTCTAGGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
629 649 1.226717 CGCCGTCTTCTCTAGGTGC 60.227 63.158 0.00 0.00 0.00 5.01
630 650 1.226717 GCGCCGTCTTCTCTAGGTG 60.227 63.158 0.00 0.00 37.33 4.00
631 651 2.416432 GGCGCCGTCTTCTCTAGGT 61.416 63.158 12.58 0.00 0.00 3.08
632 652 2.413765 GGCGCCGTCTTCTCTAGG 59.586 66.667 12.58 0.00 0.00 3.02
633 653 2.413765 GGGCGCCGTCTTCTCTAG 59.586 66.667 22.54 0.00 0.00 2.43
634 654 3.515286 CGGGCGCCGTCTTCTCTA 61.515 66.667 22.54 0.00 42.73 2.43
656 676 4.235762 TAAGGCCGCCGATGGAGC 62.236 66.667 3.05 0.00 0.00 4.70
657 677 2.280186 GTAAGGCCGCCGATGGAG 60.280 66.667 3.05 0.00 0.00 3.86
658 678 2.762459 AGTAAGGCCGCCGATGGA 60.762 61.111 3.05 0.00 0.00 3.41
659 679 2.588877 CAGTAAGGCCGCCGATGG 60.589 66.667 3.05 0.00 0.00 3.51
660 680 3.272334 GCAGTAAGGCCGCCGATG 61.272 66.667 3.05 2.93 0.00 3.84
661 681 3.740128 CTGCAGTAAGGCCGCCGAT 62.740 63.158 5.25 0.00 0.00 4.18
662 682 4.451150 CTGCAGTAAGGCCGCCGA 62.451 66.667 5.25 0.00 0.00 5.54
667 687 2.439156 CCTGGCTGCAGTAAGGCC 60.439 66.667 19.77 14.16 45.45 5.19
668 688 1.910580 TACCCTGGCTGCAGTAAGGC 61.911 60.000 24.00 10.21 42.86 4.35
669 689 0.618458 TTACCCTGGCTGCAGTAAGG 59.382 55.000 22.98 22.98 0.00 2.69
670 690 1.003118 TGTTACCCTGGCTGCAGTAAG 59.997 52.381 16.64 12.77 0.00 2.34
671 691 1.003118 CTGTTACCCTGGCTGCAGTAA 59.997 52.381 16.64 2.60 0.00 2.24
672 692 0.613260 CTGTTACCCTGGCTGCAGTA 59.387 55.000 16.64 4.03 0.00 2.74
673 693 1.376466 CTGTTACCCTGGCTGCAGT 59.624 57.895 16.64 0.00 0.00 4.40
674 694 0.250901 AACTGTTACCCTGGCTGCAG 60.251 55.000 10.11 10.11 0.00 4.41
675 695 0.537143 CAACTGTTACCCTGGCTGCA 60.537 55.000 0.50 0.00 0.00 4.41
676 696 0.537371 ACAACTGTTACCCTGGCTGC 60.537 55.000 0.00 0.00 0.00 5.25
677 697 1.238439 CACAACTGTTACCCTGGCTG 58.762 55.000 0.00 0.00 0.00 4.85
678 698 0.843984 ACACAACTGTTACCCTGGCT 59.156 50.000 0.00 0.00 0.00 4.75
679 699 1.687563 AACACAACTGTTACCCTGGC 58.312 50.000 0.00 0.00 38.95 4.85
680 700 3.283751 TGAAACACAACTGTTACCCTGG 58.716 45.455 0.00 0.00 39.88 4.45
681 701 4.638421 TCTTGAAACACAACTGTTACCCTG 59.362 41.667 0.00 0.00 39.88 4.45
682 702 4.850680 TCTTGAAACACAACTGTTACCCT 58.149 39.130 0.00 0.00 39.88 4.34
683 703 5.278315 GGATCTTGAAACACAACTGTTACCC 60.278 44.000 0.00 0.00 39.88 3.69
684 704 5.298276 TGGATCTTGAAACACAACTGTTACC 59.702 40.000 0.00 0.00 39.88 2.85
685 705 6.371809 TGGATCTTGAAACACAACTGTTAC 57.628 37.500 0.00 0.00 39.88 2.50
686 706 7.581213 ATTGGATCTTGAAACACAACTGTTA 57.419 32.000 0.00 0.00 39.88 2.41
687 707 5.913137 TTGGATCTTGAAACACAACTGTT 57.087 34.783 0.00 0.00 42.81 3.16
688 708 6.469782 AATTGGATCTTGAAACACAACTGT 57.530 33.333 0.00 0.00 34.56 3.55
691 711 9.736023 GGATATAATTGGATCTTGAAACACAAC 57.264 33.333 0.00 0.00 34.56 3.32
692 712 8.912988 GGGATATAATTGGATCTTGAAACACAA 58.087 33.333 0.00 0.00 36.97 3.33
693 713 7.228507 CGGGATATAATTGGATCTTGAAACACA 59.771 37.037 0.00 0.00 0.00 3.72
694 714 7.444183 TCGGGATATAATTGGATCTTGAAACAC 59.556 37.037 0.00 0.00 0.00 3.32
695 715 7.513856 TCGGGATATAATTGGATCTTGAAACA 58.486 34.615 0.00 0.00 0.00 2.83
696 716 7.979444 TCGGGATATAATTGGATCTTGAAAC 57.021 36.000 0.00 0.00 0.00 2.78
697 717 9.231297 GATTCGGGATATAATTGGATCTTGAAA 57.769 33.333 0.00 0.00 0.00 2.69
698 718 8.605947 AGATTCGGGATATAATTGGATCTTGAA 58.394 33.333 0.00 0.91 0.00 2.69
699 719 8.150827 AGATTCGGGATATAATTGGATCTTGA 57.849 34.615 0.00 0.00 0.00 3.02
700 720 9.539825 CTAGATTCGGGATATAATTGGATCTTG 57.460 37.037 0.00 0.00 0.00 3.02
701 721 9.273137 ACTAGATTCGGGATATAATTGGATCTT 57.727 33.333 0.00 0.00 0.00 2.40
702 722 8.846423 ACTAGATTCGGGATATAATTGGATCT 57.154 34.615 0.00 0.00 0.00 2.75
705 725 8.464404 CGTAACTAGATTCGGGATATAATTGGA 58.536 37.037 0.00 0.00 0.00 3.53
706 726 8.464404 TCGTAACTAGATTCGGGATATAATTGG 58.536 37.037 0.00 0.00 0.00 3.16
707 727 9.504710 CTCGTAACTAGATTCGGGATATAATTG 57.495 37.037 0.00 0.00 0.00 2.32
708 728 9.458727 TCTCGTAACTAGATTCGGGATATAATT 57.541 33.333 0.00 0.00 0.00 1.40
709 729 8.891720 GTCTCGTAACTAGATTCGGGATATAAT 58.108 37.037 4.97 0.00 35.33 1.28
710 730 7.063898 CGTCTCGTAACTAGATTCGGGATATAA 59.936 40.741 4.97 0.00 35.33 0.98
711 731 6.533012 CGTCTCGTAACTAGATTCGGGATATA 59.467 42.308 4.97 0.00 35.33 0.86
712 732 5.350914 CGTCTCGTAACTAGATTCGGGATAT 59.649 44.000 4.97 0.00 35.33 1.63
713 733 4.687948 CGTCTCGTAACTAGATTCGGGATA 59.312 45.833 4.97 0.00 35.33 2.59
714 734 3.497640 CGTCTCGTAACTAGATTCGGGAT 59.502 47.826 4.97 0.00 35.33 3.85
715 735 2.868583 CGTCTCGTAACTAGATTCGGGA 59.131 50.000 0.00 0.00 0.00 5.14
716 736 2.611292 ACGTCTCGTAACTAGATTCGGG 59.389 50.000 0.00 0.00 38.73 5.14
717 737 3.308053 TCACGTCTCGTAACTAGATTCGG 59.692 47.826 0.00 0.00 38.32 4.30
718 738 4.267214 TCTCACGTCTCGTAACTAGATTCG 59.733 45.833 0.00 0.00 38.32 3.34
719 739 5.715429 TCTCACGTCTCGTAACTAGATTC 57.285 43.478 0.00 0.00 38.32 2.52
720 740 5.873712 TCTTCTCACGTCTCGTAACTAGATT 59.126 40.000 0.00 0.00 38.32 2.40
721 741 5.417811 TCTTCTCACGTCTCGTAACTAGAT 58.582 41.667 0.00 0.00 38.32 1.98
722 742 4.814147 TCTTCTCACGTCTCGTAACTAGA 58.186 43.478 0.00 0.00 38.32 2.43
723 743 5.527511 TTCTTCTCACGTCTCGTAACTAG 57.472 43.478 0.00 0.00 38.32 2.57
724 744 5.929697 TTTCTTCTCACGTCTCGTAACTA 57.070 39.130 0.00 0.00 38.32 2.24
725 745 4.825546 TTTCTTCTCACGTCTCGTAACT 57.174 40.909 0.00 0.00 38.32 2.24
726 746 6.237253 GCTAATTTCTTCTCACGTCTCGTAAC 60.237 42.308 0.00 0.00 38.32 2.50
727 747 5.798934 GCTAATTTCTTCTCACGTCTCGTAA 59.201 40.000 0.00 0.00 38.32 3.18
728 748 5.330295 GCTAATTTCTTCTCACGTCTCGTA 58.670 41.667 0.00 0.00 38.32 3.43
729 749 4.167268 GCTAATTTCTTCTCACGTCTCGT 58.833 43.478 0.00 0.00 42.36 4.18
730 750 3.238570 CGCTAATTTCTTCTCACGTCTCG 59.761 47.826 0.00 0.00 0.00 4.04
731 751 3.548268 CCGCTAATTTCTTCTCACGTCTC 59.452 47.826 0.00 0.00 0.00 3.36
732 752 3.192844 TCCGCTAATTTCTTCTCACGTCT 59.807 43.478 0.00 0.00 0.00 4.18
733 753 3.508762 TCCGCTAATTTCTTCTCACGTC 58.491 45.455 0.00 0.00 0.00 4.34
734 754 3.587797 TCCGCTAATTTCTTCTCACGT 57.412 42.857 0.00 0.00 0.00 4.49
735 755 5.470845 AAATCCGCTAATTTCTTCTCACG 57.529 39.130 0.00 0.00 0.00 4.35
736 756 9.439537 GAATTAAATCCGCTAATTTCTTCTCAC 57.560 33.333 0.00 0.00 30.80 3.51
737 757 9.173021 TGAATTAAATCCGCTAATTTCTTCTCA 57.827 29.630 12.19 0.00 30.80 3.27
749 769 8.504005 CCTTTACGATATTGAATTAAATCCGCT 58.496 33.333 9.10 2.60 0.00 5.52
750 770 8.287503 ACCTTTACGATATTGAATTAAATCCGC 58.712 33.333 9.10 0.00 0.00 5.54
751 771 9.594038 CACCTTTACGATATTGAATTAAATCCG 57.406 33.333 0.00 8.08 0.00 4.18
758 778 9.661563 TCTACAACACCTTTACGATATTGAATT 57.338 29.630 0.00 0.00 0.00 2.17
759 779 9.832445 ATCTACAACACCTTTACGATATTGAAT 57.168 29.630 0.00 0.00 0.00 2.57
814 834 8.523658 GCCAAACTCTAAAATGAGACCTATTTT 58.476 33.333 0.00 0.00 40.00 1.82
815 835 7.669722 TGCCAAACTCTAAAATGAGACCTATTT 59.330 33.333 0.00 0.00 37.50 1.40
816 836 7.121315 GTGCCAAACTCTAAAATGAGACCTATT 59.879 37.037 0.00 0.00 37.50 1.73
817 837 6.599638 GTGCCAAACTCTAAAATGAGACCTAT 59.400 38.462 0.00 0.00 37.50 2.57
818 838 5.938125 GTGCCAAACTCTAAAATGAGACCTA 59.062 40.000 0.00 0.00 37.50 3.08
819 839 4.762251 GTGCCAAACTCTAAAATGAGACCT 59.238 41.667 0.00 0.00 37.50 3.85
820 840 4.518970 TGTGCCAAACTCTAAAATGAGACC 59.481 41.667 0.00 0.00 37.50 3.85
821 841 5.470098 TCTGTGCCAAACTCTAAAATGAGAC 59.530 40.000 0.00 0.00 37.50 3.36
822 842 5.620206 TCTGTGCCAAACTCTAAAATGAGA 58.380 37.500 0.00 0.00 37.50 3.27
823 843 5.106396 CCTCTGTGCCAAACTCTAAAATGAG 60.106 44.000 0.00 0.00 39.78 2.90
824 844 4.761739 CCTCTGTGCCAAACTCTAAAATGA 59.238 41.667 0.00 0.00 0.00 2.57
825 845 4.616835 GCCTCTGTGCCAAACTCTAAAATG 60.617 45.833 0.00 0.00 0.00 2.32
826 846 3.507622 GCCTCTGTGCCAAACTCTAAAAT 59.492 43.478 0.00 0.00 0.00 1.82
827 847 2.884639 GCCTCTGTGCCAAACTCTAAAA 59.115 45.455 0.00 0.00 0.00 1.52
828 848 2.106511 AGCCTCTGTGCCAAACTCTAAA 59.893 45.455 0.00 0.00 0.00 1.85
829 849 1.699634 AGCCTCTGTGCCAAACTCTAA 59.300 47.619 0.00 0.00 0.00 2.10
830 850 1.276421 GAGCCTCTGTGCCAAACTCTA 59.724 52.381 0.00 0.00 0.00 2.43
831 851 0.036022 GAGCCTCTGTGCCAAACTCT 59.964 55.000 0.00 0.00 0.00 3.24
832 852 1.294659 CGAGCCTCTGTGCCAAACTC 61.295 60.000 0.00 0.00 0.00 3.01
833 853 1.302033 CGAGCCTCTGTGCCAAACT 60.302 57.895 0.00 0.00 0.00 2.66
834 854 0.884704 TTCGAGCCTCTGTGCCAAAC 60.885 55.000 0.00 0.00 0.00 2.93
835 855 0.036732 ATTCGAGCCTCTGTGCCAAA 59.963 50.000 0.00 0.00 0.00 3.28
836 856 0.036732 AATTCGAGCCTCTGTGCCAA 59.963 50.000 0.00 0.00 0.00 4.52
837 857 0.036732 AAATTCGAGCCTCTGTGCCA 59.963 50.000 0.00 0.00 0.00 4.92
838 858 1.168714 AAAATTCGAGCCTCTGTGCC 58.831 50.000 0.00 0.00 0.00 5.01
839 859 3.302740 CGATAAAATTCGAGCCTCTGTGC 60.303 47.826 0.00 0.00 41.62 4.57
840 860 3.302740 GCGATAAAATTCGAGCCTCTGTG 60.303 47.826 0.00 0.00 41.62 3.66
841 861 2.866762 GCGATAAAATTCGAGCCTCTGT 59.133 45.455 0.00 0.00 41.62 3.41
842 862 2.221981 GGCGATAAAATTCGAGCCTCTG 59.778 50.000 1.12 0.00 41.62 3.35
843 863 2.484889 GGCGATAAAATTCGAGCCTCT 58.515 47.619 1.12 0.00 41.62 3.69
844 864 1.531578 GGGCGATAAAATTCGAGCCTC 59.468 52.381 7.83 0.00 43.68 4.70
845 865 1.594331 GGGCGATAAAATTCGAGCCT 58.406 50.000 7.83 0.00 43.68 4.58
846 866 0.591659 GGGGCGATAAAATTCGAGCC 59.408 55.000 0.00 0.00 41.62 4.70
847 867 0.234884 CGGGGCGATAAAATTCGAGC 59.765 55.000 0.00 0.00 41.62 5.03
848 868 0.865769 CCGGGGCGATAAAATTCGAG 59.134 55.000 0.00 0.00 41.62 4.04
849 869 1.161563 GCCGGGGCGATAAAATTCGA 61.162 55.000 2.18 0.00 41.62 3.71
850 870 1.281656 GCCGGGGCGATAAAATTCG 59.718 57.895 2.18 0.00 41.99 3.34
851 871 1.658114 GGCCGGGGCGATAAAATTC 59.342 57.895 4.27 0.00 43.06 2.17
852 872 3.850508 GGCCGGGGCGATAAAATT 58.149 55.556 4.27 0.00 43.06 1.82
861 881 2.360225 TTCTTAAACGGCCGGGGC 60.360 61.111 31.76 11.17 41.06 5.80
862 882 0.321830 TTCTTCTTAAACGGCCGGGG 60.322 55.000 31.76 13.94 0.00 5.73
863 883 1.467342 CTTTCTTCTTAAACGGCCGGG 59.533 52.381 31.76 13.58 0.00 5.73
864 884 1.467342 CCTTTCTTCTTAAACGGCCGG 59.533 52.381 31.76 11.50 0.00 6.13
865 885 2.415512 CTCCTTTCTTCTTAAACGGCCG 59.584 50.000 26.86 26.86 0.00 6.13
866 886 3.671716 TCTCCTTTCTTCTTAAACGGCC 58.328 45.455 0.00 0.00 0.00 6.13
867 887 4.935808 TCATCTCCTTTCTTCTTAAACGGC 59.064 41.667 0.00 0.00 0.00 5.68
868 888 7.550906 AGATTCATCTCCTTTCTTCTTAAACGG 59.449 37.037 0.00 0.00 29.30 4.44
869 889 8.485976 AGATTCATCTCCTTTCTTCTTAAACG 57.514 34.615 0.00 0.00 29.30 3.60
872 892 8.709308 CCCTAGATTCATCTCCTTTCTTCTTAA 58.291 37.037 0.00 0.00 38.32 1.85
873 893 7.202047 GCCCTAGATTCATCTCCTTTCTTCTTA 60.202 40.741 0.00 0.00 38.32 2.10
903 923 3.566553 GGAAGGGAATGGGGAAAAGTGAT 60.567 47.826 0.00 0.00 0.00 3.06
923 943 2.225624 TGGAGAACTGGATTCAGGAGGA 60.226 50.000 5.84 0.00 44.99 3.71
930 950 2.820197 GTTTGGGTGGAGAACTGGATTC 59.180 50.000 0.00 0.00 37.62 2.52
932 952 1.780309 TGTTTGGGTGGAGAACTGGAT 59.220 47.619 0.00 0.00 0.00 3.41
974 1010 4.665483 TCCTCCCCTTCTTTCTTCTTCTTT 59.335 41.667 0.00 0.00 0.00 2.52
1158 1231 0.253394 AGGAAGAAGAAGGGGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
1570 1701 5.850557 TGCATATAACCCACCAAATGAAG 57.149 39.130 0.00 0.00 0.00 3.02
1757 8081 4.576463 GCCATTTTCAAGGTCATAGTCGAT 59.424 41.667 0.00 0.00 0.00 3.59
1911 8249 5.050837 ACAGAAATTTCGCATGAAAACAAGC 60.051 36.000 12.42 0.00 46.53 4.01
1938 8276 3.121778 GCGCATTTGGAACACAAGAAATC 59.878 43.478 0.30 0.00 40.82 2.17
1942 8280 0.313672 GGCGCATTTGGAACACAAGA 59.686 50.000 10.83 0.00 40.82 3.02
1984 8323 1.264288 CGAGACCACCAAGCAACTTTC 59.736 52.381 0.00 0.00 0.00 2.62
2024 8364 6.687081 ACTTAAAGACCATTGTTTCGACAA 57.313 33.333 0.00 0.00 0.00 3.18
2054 8394 8.804204 CGTCTTATATTTAGGAATGGAGGTAGT 58.196 37.037 0.00 0.00 0.00 2.73
2055 8395 8.804204 ACGTCTTATATTTAGGAATGGAGGTAG 58.196 37.037 0.00 0.00 0.00 3.18
2056 8396 8.716674 ACGTCTTATATTTAGGAATGGAGGTA 57.283 34.615 0.00 0.00 0.00 3.08
2057 8397 7.613551 ACGTCTTATATTTAGGAATGGAGGT 57.386 36.000 0.00 0.00 0.00 3.85
2058 8398 7.387948 CCAACGTCTTATATTTAGGAATGGAGG 59.612 40.741 0.00 0.00 0.00 4.30
2059 8399 7.387948 CCCAACGTCTTATATTTAGGAATGGAG 59.612 40.741 0.00 0.00 0.00 3.86
2060 8400 7.221450 CCCAACGTCTTATATTTAGGAATGGA 58.779 38.462 0.00 0.00 0.00 3.41
2061 8401 6.430000 CCCCAACGTCTTATATTTAGGAATGG 59.570 42.308 0.00 0.00 0.00 3.16
2062 8402 6.072673 GCCCCAACGTCTTATATTTAGGAATG 60.073 42.308 0.00 0.00 0.00 2.67
2063 8403 6.002082 GCCCCAACGTCTTATATTTAGGAAT 58.998 40.000 0.00 0.00 0.00 3.01
2064 8404 5.104444 TGCCCCAACGTCTTATATTTAGGAA 60.104 40.000 0.00 0.00 0.00 3.36
2065 8405 4.409574 TGCCCCAACGTCTTATATTTAGGA 59.590 41.667 0.00 0.00 0.00 2.94
2066 8406 4.710324 TGCCCCAACGTCTTATATTTAGG 58.290 43.478 0.00 0.00 0.00 2.69
2067 8407 5.365619 ACTGCCCCAACGTCTTATATTTAG 58.634 41.667 0.00 0.00 0.00 1.85
2068 8408 5.362105 ACTGCCCCAACGTCTTATATTTA 57.638 39.130 0.00 0.00 0.00 1.40
2069 8409 4.230745 ACTGCCCCAACGTCTTATATTT 57.769 40.909 0.00 0.00 0.00 1.40
2070 8410 3.926058 ACTGCCCCAACGTCTTATATT 57.074 42.857 0.00 0.00 0.00 1.28
2071 8411 3.926058 AACTGCCCCAACGTCTTATAT 57.074 42.857 0.00 0.00 0.00 0.86
2072 8412 3.706600 AAACTGCCCCAACGTCTTATA 57.293 42.857 0.00 0.00 0.00 0.98
2073 8413 2.579410 AAACTGCCCCAACGTCTTAT 57.421 45.000 0.00 0.00 0.00 1.73
2074 8414 3.488778 TTAAACTGCCCCAACGTCTTA 57.511 42.857 0.00 0.00 0.00 2.10
2075 8415 2.351706 TTAAACTGCCCCAACGTCTT 57.648 45.000 0.00 0.00 0.00 3.01
2076 8416 2.351706 TTTAAACTGCCCCAACGTCT 57.648 45.000 0.00 0.00 0.00 4.18
2077 8417 3.653539 AATTTAAACTGCCCCAACGTC 57.346 42.857 0.00 0.00 0.00 4.34
2078 8418 3.508402 CCTAATTTAAACTGCCCCAACGT 59.492 43.478 0.00 0.00 0.00 3.99
2079 8419 3.759618 TCCTAATTTAAACTGCCCCAACG 59.240 43.478 0.00 0.00 0.00 4.10
2080 8420 5.731957 TTCCTAATTTAAACTGCCCCAAC 57.268 39.130 0.00 0.00 0.00 3.77
2081 8421 5.188751 CCATTCCTAATTTAAACTGCCCCAA 59.811 40.000 0.00 0.00 0.00 4.12
2082 8422 4.714308 CCATTCCTAATTTAAACTGCCCCA 59.286 41.667 0.00 0.00 0.00 4.96
2083 8423 4.959839 TCCATTCCTAATTTAAACTGCCCC 59.040 41.667 0.00 0.00 0.00 5.80
2084 8424 5.069119 CCTCCATTCCTAATTTAAACTGCCC 59.931 44.000 0.00 0.00 0.00 5.36
2085 8425 5.656859 ACCTCCATTCCTAATTTAAACTGCC 59.343 40.000 0.00 0.00 0.00 4.85
2086 8426 6.775594 ACCTCCATTCCTAATTTAAACTGC 57.224 37.500 0.00 0.00 0.00 4.40
2089 8429 9.895138 TGTACTACCTCCATTCCTAATTTAAAC 57.105 33.333 0.00 0.00 0.00 2.01
2092 8432 9.442062 TCATGTACTACCTCCATTCCTAATTTA 57.558 33.333 0.00 0.00 0.00 1.40
2093 8433 8.331931 TCATGTACTACCTCCATTCCTAATTT 57.668 34.615 0.00 0.00 0.00 1.82
2094 8434 7.789831 TCTCATGTACTACCTCCATTCCTAATT 59.210 37.037 0.00 0.00 0.00 1.40
2095 8435 7.306013 TCTCATGTACTACCTCCATTCCTAAT 58.694 38.462 0.00 0.00 0.00 1.73
2096 8436 6.679542 TCTCATGTACTACCTCCATTCCTAA 58.320 40.000 0.00 0.00 0.00 2.69
2097 8437 6.275692 TCTCATGTACTACCTCCATTCCTA 57.724 41.667 0.00 0.00 0.00 2.94
2098 8438 5.144159 TCTCATGTACTACCTCCATTCCT 57.856 43.478 0.00 0.00 0.00 3.36
2099 8439 5.871396 TTCTCATGTACTACCTCCATTCC 57.129 43.478 0.00 0.00 0.00 3.01
2100 8440 7.065923 GGTTTTTCTCATGTACTACCTCCATTC 59.934 40.741 0.00 0.00 0.00 2.67
2101 8441 6.884836 GGTTTTTCTCATGTACTACCTCCATT 59.115 38.462 0.00 0.00 0.00 3.16
2102 8442 6.215636 AGGTTTTTCTCATGTACTACCTCCAT 59.784 38.462 0.00 0.00 29.01 3.41
2103 8443 5.546499 AGGTTTTTCTCATGTACTACCTCCA 59.454 40.000 0.00 0.00 29.01 3.86
2104 8444 6.051179 AGGTTTTTCTCATGTACTACCTCC 57.949 41.667 0.00 0.00 29.01 4.30
2153 8494 2.846039 ACGCAATGACTCTAGTACGG 57.154 50.000 0.00 0.00 0.00 4.02
2189 8530 9.581289 GGTCTGATACTATATGGCAGATATAGT 57.419 37.037 21.99 21.99 45.00 2.12
2190 8531 9.806448 AGGTCTGATACTATATGGCAGATATAG 57.194 37.037 15.56 15.56 37.84 1.31
2191 8532 9.579932 CAGGTCTGATACTATATGGCAGATATA 57.420 37.037 1.76 0.00 37.84 0.86
2192 8533 8.064389 ACAGGTCTGATACTATATGGCAGATAT 58.936 37.037 1.76 0.00 37.84 1.63
2193 8534 7.414266 ACAGGTCTGATACTATATGGCAGATA 58.586 38.462 4.84 1.38 37.84 1.98
2194 8535 6.259893 ACAGGTCTGATACTATATGGCAGAT 58.740 40.000 4.84 0.00 37.84 2.90
2195 8536 5.645201 ACAGGTCTGATACTATATGGCAGA 58.355 41.667 4.84 0.00 33.58 4.26
2196 8537 5.991933 ACAGGTCTGATACTATATGGCAG 57.008 43.478 4.84 0.00 0.00 4.85
2197 8538 6.747414 AAACAGGTCTGATACTATATGGCA 57.253 37.500 4.84 0.00 0.00 4.92
2198 8539 7.386299 CAGAAAACAGGTCTGATACTATATGGC 59.614 40.741 4.84 0.00 44.44 4.40
2199 8540 8.424918 ACAGAAAACAGGTCTGATACTATATGG 58.575 37.037 8.36 0.00 44.44 2.74
2203 8544 8.982723 ACATACAGAAAACAGGTCTGATACTAT 58.017 33.333 8.36 0.00 44.44 2.12
2204 8545 8.362464 ACATACAGAAAACAGGTCTGATACTA 57.638 34.615 8.36 0.00 44.44 1.82
2205 8546 7.179338 AGACATACAGAAAACAGGTCTGATACT 59.821 37.037 8.36 0.00 44.44 2.12
2206 8547 7.324178 AGACATACAGAAAACAGGTCTGATAC 58.676 38.462 8.36 0.00 44.44 2.24
2207 8548 7.482169 AGACATACAGAAAACAGGTCTGATA 57.518 36.000 8.36 0.00 44.44 2.15
2208 8549 6.365970 AGACATACAGAAAACAGGTCTGAT 57.634 37.500 8.36 0.00 44.44 2.90
2209 8550 5.808366 AGACATACAGAAAACAGGTCTGA 57.192 39.130 8.36 0.00 44.44 3.27
2210 8551 6.591834 CCTAAGACATACAGAAAACAGGTCTG 59.408 42.308 0.00 0.00 46.59 3.51
2211 8552 6.270231 ACCTAAGACATACAGAAAACAGGTCT 59.730 38.462 0.00 0.00 35.80 3.85
2212 8553 6.465084 ACCTAAGACATACAGAAAACAGGTC 58.535 40.000 0.00 0.00 0.00 3.85
2213 8554 6.435292 ACCTAAGACATACAGAAAACAGGT 57.565 37.500 0.00 0.00 0.00 4.00
2214 8555 7.745620 AAACCTAAGACATACAGAAAACAGG 57.254 36.000 0.00 0.00 0.00 4.00
2242 8585 7.648112 GTCCAAACAAGCCTAGTTTCTTTAAAG 59.352 37.037 9.04 9.04 37.10 1.85
2244 8587 6.831868 AGTCCAAACAAGCCTAGTTTCTTTAA 59.168 34.615 0.00 0.00 37.10 1.52
2309 8763 1.209019 ACAGTAGGGATGCTGAGCAAG 59.791 52.381 12.69 0.00 43.62 4.01
2377 8839 6.272822 AGACAATTAAAGGCCTGTGAATTC 57.727 37.500 5.69 0.00 0.00 2.17
2622 9111 0.469917 AATGTACCTGCCCTCCGATG 59.530 55.000 0.00 0.00 0.00 3.84
2677 9214 8.976353 TGCTTAGGCAAAAGATAAATATTGGAA 58.024 29.630 0.00 0.00 46.36 3.53
2706 9247 9.987272 TGGTCATAACTCATAACTCATAAGATG 57.013 33.333 0.00 0.00 0.00 2.90
2757 9347 7.225931 AGTGCGTTTTGTGAAAAGATCTAACTA 59.774 33.333 0.00 0.00 0.00 2.24
2970 9695 8.171164 AGAGGATTTAAGACAACAAGGAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
3034 11129 0.039180 TGCTGTCGAGTCTAAGGGGA 59.961 55.000 0.00 0.00 0.00 4.81
3141 11816 8.097038 TCTCTAACATCTCTAACAAACTGCAAT 58.903 33.333 0.00 0.00 0.00 3.56
3143 11818 6.993079 TCTCTAACATCTCTAACAAACTGCA 58.007 36.000 0.00 0.00 0.00 4.41
3144 11819 7.412455 GCTTCTCTAACATCTCTAACAAACTGC 60.412 40.741 0.00 0.00 0.00 4.40
3145 11820 7.600375 TGCTTCTCTAACATCTCTAACAAACTG 59.400 37.037 0.00 0.00 0.00 3.16
3146 11821 7.671302 TGCTTCTCTAACATCTCTAACAAACT 58.329 34.615 0.00 0.00 0.00 2.66
3147 11822 7.891183 TGCTTCTCTAACATCTCTAACAAAC 57.109 36.000 0.00 0.00 0.00 2.93
3149 11824 9.507329 AAATTGCTTCTCTAACATCTCTAACAA 57.493 29.630 0.00 0.00 0.00 2.83
3150 11825 9.155975 GAAATTGCTTCTCTAACATCTCTAACA 57.844 33.333 0.00 0.00 0.00 2.41
3151 11826 9.377312 AGAAATTGCTTCTCTAACATCTCTAAC 57.623 33.333 0.00 0.00 40.61 2.34
3152 11827 9.950496 AAGAAATTGCTTCTCTAACATCTCTAA 57.050 29.630 0.00 0.00 44.00 2.10
3153 11828 9.593134 GAAGAAATTGCTTCTCTAACATCTCTA 57.407 33.333 17.71 0.00 44.00 2.43
3154 11829 7.277539 CGAAGAAATTGCTTCTCTAACATCTCT 59.722 37.037 21.48 0.00 44.00 3.10
3155 11830 7.276658 TCGAAGAAATTGCTTCTCTAACATCTC 59.723 37.037 21.48 0.00 44.00 2.75
3156 11831 7.099764 TCGAAGAAATTGCTTCTCTAACATCT 58.900 34.615 21.48 0.00 44.00 2.90
3157 11832 7.295952 TCGAAGAAATTGCTTCTCTAACATC 57.704 36.000 21.48 0.00 44.00 3.06
3158 11833 7.550551 TCATCGAAGAAATTGCTTCTCTAACAT 59.449 33.333 21.48 3.97 44.00 2.71
3186 11861 0.461548 CATTAGCCGAGTCTCCAGCA 59.538 55.000 11.12 0.00 0.00 4.41
3248 11927 5.705905 AGGTTAAAAATCCTGCTACACTGAC 59.294 40.000 0.00 0.00 32.29 3.51
3274 11958 8.039538 CACGATCTGGTACCTACTACTCATATA 58.960 40.741 14.36 0.00 0.00 0.86
3278 11962 4.449131 CACGATCTGGTACCTACTACTCA 58.551 47.826 14.36 0.00 0.00 3.41
3291 11975 1.892819 AGGTCTGCACCACGATCTGG 61.893 60.000 9.01 9.01 46.68 3.86
3312 11996 1.851304 TGCCTGGGGAAAAATGCTAG 58.149 50.000 0.00 0.00 0.00 3.42
3315 11999 0.903942 TGATGCCTGGGGAAAAATGC 59.096 50.000 0.00 0.00 0.00 3.56
3316 12000 2.678769 GCTTGATGCCTGGGGAAAAATG 60.679 50.000 0.00 0.00 35.15 2.32
3317 12001 1.556451 GCTTGATGCCTGGGGAAAAAT 59.444 47.619 0.00 0.00 35.15 1.82
3318 12002 0.975887 GCTTGATGCCTGGGGAAAAA 59.024 50.000 0.00 0.00 35.15 1.94
3329 12013 1.514678 TTGTGTCCACGGCTTGATGC 61.515 55.000 0.00 0.00 41.94 3.91
3330 12014 0.950836 TTTGTGTCCACGGCTTGATG 59.049 50.000 0.00 0.00 0.00 3.07
3331 12015 0.951558 GTTTGTGTCCACGGCTTGAT 59.048 50.000 0.00 0.00 0.00 2.57
3333 12017 1.358759 GGTTTGTGTCCACGGCTTG 59.641 57.895 0.00 0.00 0.00 4.01
3334 12018 0.681564 TTGGTTTGTGTCCACGGCTT 60.682 50.000 0.00 0.00 34.45 4.35
3335 12019 0.681564 TTTGGTTTGTGTCCACGGCT 60.682 50.000 0.00 0.00 34.45 5.52
3336 12020 0.526739 GTTTGGTTTGTGTCCACGGC 60.527 55.000 0.00 0.00 34.45 5.68
3337 12021 1.099689 AGTTTGGTTTGTGTCCACGG 58.900 50.000 0.00 0.00 34.45 4.94
3338 12022 2.286772 GCTAGTTTGGTTTGTGTCCACG 60.287 50.000 0.00 0.00 34.45 4.94
3339 12023 2.949644 AGCTAGTTTGGTTTGTGTCCAC 59.050 45.455 0.00 0.00 34.45 4.02
3340 12024 3.118038 AGAGCTAGTTTGGTTTGTGTCCA 60.118 43.478 0.00 0.00 0.00 4.02
3341 12025 3.477530 AGAGCTAGTTTGGTTTGTGTCC 58.522 45.455 0.00 0.00 0.00 4.02
3342 12026 6.613755 TTTAGAGCTAGTTTGGTTTGTGTC 57.386 37.500 0.00 0.00 0.00 3.67
3343 12027 6.515035 GCATTTAGAGCTAGTTTGGTTTGTGT 60.515 38.462 0.00 0.00 0.00 3.72
3344 12028 5.858581 GCATTTAGAGCTAGTTTGGTTTGTG 59.141 40.000 0.00 0.00 0.00 3.33
3345 12029 5.770162 AGCATTTAGAGCTAGTTTGGTTTGT 59.230 36.000 0.00 0.00 41.32 2.83
3346 12030 6.259550 AGCATTTAGAGCTAGTTTGGTTTG 57.740 37.500 0.00 0.00 41.32 2.93
3347 12031 6.717084 AGAAGCATTTAGAGCTAGTTTGGTTT 59.283 34.615 0.00 0.00 42.53 3.27
3348 12032 6.241645 AGAAGCATTTAGAGCTAGTTTGGTT 58.758 36.000 0.00 0.00 42.53 3.67
3349 12033 5.810095 AGAAGCATTTAGAGCTAGTTTGGT 58.190 37.500 0.00 0.00 42.53 3.67
3350 12034 6.018343 GCTAGAAGCATTTAGAGCTAGTTTGG 60.018 42.308 0.00 0.00 42.53 3.28
3351 12035 6.018343 GGCTAGAAGCATTTAGAGCTAGTTTG 60.018 42.308 0.00 0.00 44.75 2.93
3352 12036 6.052360 GGCTAGAAGCATTTAGAGCTAGTTT 58.948 40.000 0.00 0.00 44.75 2.66
3353 12037 5.365314 AGGCTAGAAGCATTTAGAGCTAGTT 59.635 40.000 0.00 0.00 44.75 2.24
3354 12038 4.898861 AGGCTAGAAGCATTTAGAGCTAGT 59.101 41.667 0.00 0.00 44.75 2.57
3355 12039 5.010516 TCAGGCTAGAAGCATTTAGAGCTAG 59.989 44.000 0.00 0.00 44.75 3.42
3356 12040 4.895889 TCAGGCTAGAAGCATTTAGAGCTA 59.104 41.667 0.00 0.00 44.75 3.32
3357 12041 3.708631 TCAGGCTAGAAGCATTTAGAGCT 59.291 43.478 0.00 0.00 44.75 4.09
3358 12042 4.065321 TCAGGCTAGAAGCATTTAGAGC 57.935 45.455 0.00 0.00 44.75 4.09
3359 12043 5.851720 TCATCAGGCTAGAAGCATTTAGAG 58.148 41.667 0.00 0.00 44.75 2.43
3360 12044 5.876651 TCATCAGGCTAGAAGCATTTAGA 57.123 39.130 0.00 0.00 44.75 2.10
3361 12045 5.411977 CCATCATCAGGCTAGAAGCATTTAG 59.588 44.000 0.00 0.00 44.75 1.85
3362 12046 5.163163 ACCATCATCAGGCTAGAAGCATTTA 60.163 40.000 0.00 0.00 44.75 1.40
3385 12069 0.872388 ACGAAAAATGCACTCGGGAC 59.128 50.000 12.26 0.00 36.90 4.46
3387 12071 0.871722 TCACGAAAAATGCACTCGGG 59.128 50.000 12.26 9.07 37.33 5.14
3388 12072 1.399727 GGTCACGAAAAATGCACTCGG 60.400 52.381 12.26 3.99 36.90 4.63
3433 12120 1.177401 TCCCATCTGTGACAGAGACG 58.823 55.000 20.90 11.29 44.08 4.18
3483 12170 6.662755 TGATTTTATCTATTCAGCACCCACT 58.337 36.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.