Multiple sequence alignment - TraesCS5B01G514600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G514600 chr5B 100.000 3553 0 0 1 3553 679406320 679402768 0.000000e+00 6562.0
1 TraesCS5B01G514600 chr5B 84.059 1217 114 43 886 2078 679559938 679558778 0.000000e+00 1099.0
2 TraesCS5B01G514600 chr5B 79.539 1476 177 56 886 2317 679672089 679673483 0.000000e+00 937.0
3 TraesCS5B01G514600 chr5B 88.427 337 33 5 2316 2647 679558481 679558146 5.520000e-108 401.0
4 TraesCS5B01G514600 chr5B 94.245 139 6 1 1 137 219883112 219883250 9.990000e-51 211.0
5 TraesCS5B01G514600 chr5B 94.245 139 6 1 1 137 679513104 679512966 9.990000e-51 211.0
6 TraesCS5B01G514600 chr5B 90.845 142 11 2 2719 2860 679558116 679557977 4.680000e-44 189.0
7 TraesCS5B01G514600 chr5D 90.414 1450 83 18 886 2317 538425353 538423942 0.000000e+00 1857.0
8 TraesCS5B01G514600 chr5D 91.742 1223 60 7 2316 3503 538423905 538422689 0.000000e+00 1661.0
9 TraesCS5B01G514600 chr5D 83.219 1460 139 50 886 2317 538442366 538440985 0.000000e+00 1242.0
10 TraesCS5B01G514600 chr5D 82.657 1182 142 39 964 2120 538621531 538622674 0.000000e+00 989.0
11 TraesCS5B01G514600 chr5D 85.062 964 106 23 993 1948 538655482 538656415 0.000000e+00 948.0
12 TraesCS5B01G514600 chr5D 84.410 898 96 21 979 1860 538417294 538416425 0.000000e+00 843.0
13 TraesCS5B01G514600 chr5D 87.161 553 53 12 2316 2853 538440948 538440399 2.340000e-171 612.0
14 TraesCS5B01G514600 chr5D 84.570 512 60 14 140 644 35182042 35181543 1.150000e-134 490.0
15 TraesCS5B01G514600 chr5D 83.396 536 54 20 2321 2827 538622855 538623384 6.950000e-127 464.0
16 TraesCS5B01G514600 chr5D 83.398 518 66 11 140 644 538426026 538425516 2.500000e-126 462.0
17 TraesCS5B01G514600 chr5D 89.905 317 28 2 2316 2630 538656587 538656901 4.270000e-109 405.0
18 TraesCS5B01G514600 chr5D 100.000 35 0 0 3516 3550 538422551 538422517 8.230000e-07 65.8
19 TraesCS5B01G514600 chr4A 89.424 1371 85 23 961 2317 631494205 631495529 0.000000e+00 1674.0
20 TraesCS5B01G514600 chr4A 85.312 1457 141 39 886 2317 631475868 631477276 0.000000e+00 1437.0
21 TraesCS5B01G514600 chr4A 82.059 981 121 29 978 1948 630899250 630898315 0.000000e+00 785.0
22 TraesCS5B01G514600 chr4A 88.498 626 43 4 2907 3507 631496485 631497106 0.000000e+00 730.0
23 TraesCS5B01G514600 chr4A 85.871 637 56 16 886 1505 630878216 630877597 0.000000e+00 647.0
24 TraesCS5B01G514600 chr4A 85.512 635 49 16 2316 2909 631495566 631496198 1.080000e-174 623.0
25 TraesCS5B01G514600 chr4A 83.525 522 69 13 140 654 695770943 695770432 4.150000e-129 472.0
26 TraesCS5B01G514600 chr4A 84.681 470 55 10 2316 2769 631477319 631477787 1.500000e-123 453.0
27 TraesCS5B01G514600 chr4A 78.389 782 97 40 1564 2317 630877579 630876842 3.260000e-120 442.0
28 TraesCS5B01G514600 chr4A 89.308 318 29 3 2316 2630 631501725 631502040 9.250000e-106 394.0
29 TraesCS5B01G514600 chr4A 88.926 298 27 3 2321 2614 630876800 630876505 2.610000e-96 363.0
30 TraesCS5B01G514600 chr4A 81.780 236 29 8 2604 2827 630876482 630876249 6.060000e-43 185.0
31 TraesCS5B01G514600 chr4A 81.553 206 24 7 2641 2834 630897800 630897597 1.320000e-34 158.0
32 TraesCS5B01G514600 chr4A 93.548 62 4 0 2799 2860 631477788 631477849 3.780000e-15 93.5
33 TraesCS5B01G514600 chr4A 100.000 35 0 0 3516 3550 631497236 631497270 8.230000e-07 65.8
34 TraesCS5B01G514600 chrUn 81.975 1104 137 36 978 2051 67363412 67362341 0.000000e+00 880.0
35 TraesCS5B01G514600 chrUn 79.181 562 65 24 2316 2827 67362090 67361531 3.400000e-90 342.0
36 TraesCS5B01G514600 chrUn 93.878 49 3 0 2862 2910 153410715 153410763 1.370000e-09 75.0
37 TraesCS5B01G514600 chr1D 87.257 565 49 13 2316 2860 6386174 6385613 1.080000e-174 623.0
38 TraesCS5B01G514600 chr1D 81.729 509 77 13 140 641 9021114 9020615 9.180000e-111 411.0
39 TraesCS5B01G514600 chr1D 81.445 512 79 13 137 641 9263474 9262972 4.270000e-109 405.0
40 TraesCS5B01G514600 chr2B 84.952 525 58 16 137 651 737933039 737933552 2.450000e-141 512.0
41 TraesCS5B01G514600 chr2B 88.764 178 19 1 643 820 736423916 736423740 2.150000e-52 217.0
42 TraesCS5B01G514600 chr2B 94.245 139 6 1 4 140 379838178 379838040 9.990000e-51 211.0
43 TraesCS5B01G514600 chr2B 93.525 139 7 1 1 137 128678969 128679107 4.650000e-49 206.0
44 TraesCS5B01G514600 chr2B 91.892 148 8 3 4 147 376467947 376468094 1.670000e-48 204.0
45 TraesCS5B01G514600 chr2B 95.833 48 2 0 2862 2909 530790383 530790336 1.060000e-10 78.7
46 TraesCS5B01G514600 chr2B 95.833 48 2 0 2862 2909 530835639 530835592 1.060000e-10 78.7
47 TraesCS5B01G514600 chr5A 84.411 526 58 14 141 655 317244672 317244160 2.460000e-136 496.0
48 TraesCS5B01G514600 chr5A 89.655 174 15 3 637 808 687682577 687682749 5.970000e-53 219.0
49 TraesCS5B01G514600 chr2A 83.908 522 68 13 137 651 743563625 743564137 5.330000e-133 484.0
50 TraesCS5B01G514600 chr6B 82.387 511 74 13 142 644 275924402 275924904 7.050000e-117 431.0
51 TraesCS5B01G514600 chr6B 92.517 147 8 2 1 144 189261721 189261575 1.290000e-49 207.0
52 TraesCS5B01G514600 chr7B 90.698 172 15 1 641 812 714315940 714316110 9.920000e-56 228.0
53 TraesCS5B01G514600 chr7B 94.245 139 6 1 1 137 538460826 538460688 9.990000e-51 211.0
54 TraesCS5B01G514600 chr3B 91.018 167 14 1 642 808 326997204 326997369 1.280000e-54 224.0
55 TraesCS5B01G514600 chr3B 89.655 174 17 1 635 808 537423014 537423186 1.660000e-53 220.0
56 TraesCS5B01G514600 chr4B 89.773 176 15 3 636 811 394643465 394643293 4.620000e-54 222.0
57 TraesCS5B01G514600 chr4B 91.837 49 4 0 2862 2910 34439507 34439555 6.360000e-08 69.4
58 TraesCS5B01G514600 chr4D 89.205 176 18 1 636 811 93338035 93338209 5.970000e-53 219.0
59 TraesCS5B01G514600 chr3D 88.333 180 19 2 629 808 360695815 360695992 7.730000e-52 215.0
60 TraesCS5B01G514600 chr3D 88.462 52 4 2 2862 2912 534666740 534666690 1.070000e-05 62.1
61 TraesCS5B01G514600 chr1B 94.964 139 4 2 1 137 395280456 395280593 7.730000e-52 215.0
62 TraesCS5B01G514600 chr1B 94.203 138 6 1 1 136 395305113 395305250 3.590000e-50 209.0
63 TraesCS5B01G514600 chr7D 86.528 193 22 4 639 830 45837519 45837330 3.590000e-50 209.0
64 TraesCS5B01G514600 chr7D 94.000 50 3 0 2861 2910 19415755 19415804 3.800000e-10 76.8
65 TraesCS5B01G514600 chr2D 90.400 125 12 0 1000 1124 102269844 102269968 7.890000e-37 165.0
66 TraesCS5B01G514600 chr2D 96.226 53 2 0 2862 2914 29151122 29151070 1.760000e-13 87.9
67 TraesCS5B01G514600 chr6D 87.671 73 6 3 2861 2931 346959228 346959157 8.180000e-12 82.4
68 TraesCS5B01G514600 chr6D 93.750 48 3 0 2863 2910 438924552 438924599 4.920000e-09 73.1
69 TraesCS5B01G514600 chr3A 93.878 49 3 0 2862 2910 15316153 15316201 1.370000e-09 75.0
70 TraesCS5B01G514600 chr3A 92.157 51 4 0 2863 2913 112935968 112935918 4.920000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G514600 chr5B 679402768 679406320 3552 True 6562.000000 6562 100.0000 1 3553 1 chr5B.!!$R1 3552
1 TraesCS5B01G514600 chr5B 679672089 679673483 1394 False 937.000000 937 79.5390 886 2317 1 chr5B.!!$F2 1431
2 TraesCS5B01G514600 chr5B 679557977 679559938 1961 True 563.000000 1099 87.7770 886 2860 3 chr5B.!!$R3 1974
3 TraesCS5B01G514600 chr5D 538422517 538426026 3509 True 1011.450000 1857 91.3885 140 3550 4 chr5D.!!$R3 3410
4 TraesCS5B01G514600 chr5D 538440399 538442366 1967 True 927.000000 1242 85.1900 886 2853 2 chr5D.!!$R4 1967
5 TraesCS5B01G514600 chr5D 538416425 538417294 869 True 843.000000 843 84.4100 979 1860 1 chr5D.!!$R2 881
6 TraesCS5B01G514600 chr5D 538621531 538623384 1853 False 726.500000 989 83.0265 964 2827 2 chr5D.!!$F1 1863
7 TraesCS5B01G514600 chr5D 538655482 538656901 1419 False 676.500000 948 87.4835 993 2630 2 chr5D.!!$F2 1637
8 TraesCS5B01G514600 chr4A 631494205 631497270 3065 False 773.200000 1674 90.8585 961 3550 4 chr4A.!!$F3 2589
9 TraesCS5B01G514600 chr4A 631475868 631477849 1981 False 661.166667 1437 87.8470 886 2860 3 chr4A.!!$F2 1974
10 TraesCS5B01G514600 chr4A 695770432 695770943 511 True 472.000000 472 83.5250 140 654 1 chr4A.!!$R1 514
11 TraesCS5B01G514600 chr4A 630897597 630899250 1653 True 471.500000 785 81.8060 978 2834 2 chr4A.!!$R3 1856
12 TraesCS5B01G514600 chr4A 630876249 630878216 1967 True 409.250000 647 83.7415 886 2827 4 chr4A.!!$R2 1941
13 TraesCS5B01G514600 chrUn 67361531 67363412 1881 True 611.000000 880 80.5780 978 2827 2 chrUn.!!$R1 1849
14 TraesCS5B01G514600 chr1D 6385613 6386174 561 True 623.000000 623 87.2570 2316 2860 1 chr1D.!!$R1 544
15 TraesCS5B01G514600 chr1D 9262972 9263474 502 True 405.000000 405 81.4450 137 641 1 chr1D.!!$R3 504
16 TraesCS5B01G514600 chr2B 737933039 737933552 513 False 512.000000 512 84.9520 137 651 1 chr2B.!!$F3 514
17 TraesCS5B01G514600 chr5A 317244160 317244672 512 True 496.000000 496 84.4110 141 655 1 chr5A.!!$R1 514
18 TraesCS5B01G514600 chr2A 743563625 743564137 512 False 484.000000 484 83.9080 137 651 1 chr2A.!!$F1 514
19 TraesCS5B01G514600 chr6B 275924402 275924904 502 False 431.000000 431 82.3870 142 644 1 chr6B.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.037697 AAGCACACGATTAGTCCGCA 60.038 50.0 0.0 0.0 31.34 5.69 F
86 87 0.037697 AGCACACGATTAGTCCGCAA 60.038 50.0 0.0 0.0 31.34 4.85 F
90 91 0.247145 CACGATTAGTCCGCAAACGC 60.247 55.0 0.0 0.0 38.22 4.84 F
945 1058 0.738389 CACCTCCCAAACACACACAC 59.262 55.0 0.0 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1833 0.179062 AGTGCTTCGGGATCATCTGC 60.179 55.000 0.00 0.0 0.00 4.26 R
1806 2022 0.732538 GGAAAACCAAGCAATCGCCG 60.733 55.000 0.00 0.0 39.83 6.46 R
1836 2052 1.334869 CTCACCTTGAACTTTGCGCTT 59.665 47.619 9.73 0.0 0.00 4.68 R
2584 3058 1.748879 CAATGTACCTGCACCCCGG 60.749 63.158 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.796500 GAGGAAGGGATCGTCTCGT 58.204 57.895 0.00 0.00 39.36 4.18
38 39 0.382515 GAGGAAGGGATCGTCTCGTG 59.617 60.000 0.00 0.00 39.36 4.35
39 40 1.227002 GGAAGGGATCGTCTCGTGC 60.227 63.158 0.00 0.00 0.00 5.34
40 41 1.227002 GAAGGGATCGTCTCGTGCC 60.227 63.158 0.00 0.00 0.00 5.01
41 42 1.945354 GAAGGGATCGTCTCGTGCCA 61.945 60.000 0.00 0.00 0.00 4.92
42 43 1.541310 AAGGGATCGTCTCGTGCCAA 61.541 55.000 0.00 0.00 0.00 4.52
43 44 1.079405 GGGATCGTCTCGTGCCAAA 60.079 57.895 0.00 0.00 0.00 3.28
44 45 1.084370 GGGATCGTCTCGTGCCAAAG 61.084 60.000 0.00 0.00 0.00 2.77
45 46 1.084370 GGATCGTCTCGTGCCAAAGG 61.084 60.000 0.00 0.00 0.00 3.11
46 47 0.108804 GATCGTCTCGTGCCAAAGGA 60.109 55.000 0.00 0.00 0.00 3.36
47 48 0.537188 ATCGTCTCGTGCCAAAGGAT 59.463 50.000 0.00 0.00 0.00 3.24
48 49 0.389817 TCGTCTCGTGCCAAAGGATG 60.390 55.000 0.00 0.00 0.00 3.51
49 50 0.389817 CGTCTCGTGCCAAAGGATGA 60.390 55.000 0.00 0.00 0.00 2.92
50 51 1.808411 GTCTCGTGCCAAAGGATGAA 58.192 50.000 0.00 0.00 0.00 2.57
51 52 2.359900 GTCTCGTGCCAAAGGATGAAT 58.640 47.619 0.00 0.00 0.00 2.57
52 53 2.352960 GTCTCGTGCCAAAGGATGAATC 59.647 50.000 0.00 0.00 0.00 2.52
53 54 2.237143 TCTCGTGCCAAAGGATGAATCT 59.763 45.455 0.00 0.00 0.00 2.40
54 55 2.611292 CTCGTGCCAAAGGATGAATCTC 59.389 50.000 0.00 0.00 0.00 2.75
55 56 2.237143 TCGTGCCAAAGGATGAATCTCT 59.763 45.455 0.00 0.00 0.00 3.10
56 57 2.353889 CGTGCCAAAGGATGAATCTCTG 59.646 50.000 0.00 0.00 0.00 3.35
57 58 3.614092 GTGCCAAAGGATGAATCTCTGA 58.386 45.455 0.00 0.00 0.00 3.27
58 59 4.012374 GTGCCAAAGGATGAATCTCTGAA 58.988 43.478 0.00 0.00 0.00 3.02
59 60 4.460382 GTGCCAAAGGATGAATCTCTGAAA 59.540 41.667 0.00 0.00 0.00 2.69
60 61 5.126707 GTGCCAAAGGATGAATCTCTGAAAT 59.873 40.000 0.00 0.00 0.00 2.17
61 62 5.126545 TGCCAAAGGATGAATCTCTGAAATG 59.873 40.000 0.00 0.00 0.00 2.32
62 63 5.589192 CCAAAGGATGAATCTCTGAAATGC 58.411 41.667 0.00 0.00 0.00 3.56
63 64 5.360144 CCAAAGGATGAATCTCTGAAATGCT 59.640 40.000 0.00 0.00 0.00 3.79
64 65 6.459848 CCAAAGGATGAATCTCTGAAATGCTC 60.460 42.308 0.00 0.00 0.00 4.26
65 66 5.369409 AGGATGAATCTCTGAAATGCTCA 57.631 39.130 0.00 0.00 0.00 4.26
66 67 5.752650 AGGATGAATCTCTGAAATGCTCAA 58.247 37.500 0.00 0.00 32.17 3.02
67 68 6.185511 AGGATGAATCTCTGAAATGCTCAAA 58.814 36.000 0.00 0.00 32.17 2.69
68 69 6.319152 AGGATGAATCTCTGAAATGCTCAAAG 59.681 38.462 0.00 0.00 32.17 2.77
69 70 5.306532 TGAATCTCTGAAATGCTCAAAGC 57.693 39.130 0.00 0.00 42.82 3.51
81 82 3.375911 GCTCAAAGCACACGATTAGTC 57.624 47.619 0.00 0.00 41.89 2.59
82 83 2.094417 GCTCAAAGCACACGATTAGTCC 59.906 50.000 0.00 0.00 41.89 3.85
83 84 2.333926 TCAAAGCACACGATTAGTCCG 58.666 47.619 0.00 0.00 0.00 4.79
84 85 1.076332 AAAGCACACGATTAGTCCGC 58.924 50.000 0.00 0.00 0.00 5.54
85 86 0.037697 AAGCACACGATTAGTCCGCA 60.038 50.000 0.00 0.00 31.34 5.69
86 87 0.037697 AGCACACGATTAGTCCGCAA 60.038 50.000 0.00 0.00 31.34 4.85
87 88 0.793861 GCACACGATTAGTCCGCAAA 59.206 50.000 0.00 0.00 0.00 3.68
88 89 1.463528 GCACACGATTAGTCCGCAAAC 60.464 52.381 0.00 0.00 0.00 2.93
89 90 1.065358 ACACGATTAGTCCGCAAACG 58.935 50.000 0.00 0.00 39.67 3.60
90 91 0.247145 CACGATTAGTCCGCAAACGC 60.247 55.000 0.00 0.00 38.22 4.84
100 101 4.912173 GCAAACGCGTTGTCATCA 57.088 50.000 27.34 0.00 39.63 3.07
101 102 3.156401 GCAAACGCGTTGTCATCAA 57.844 47.368 27.34 0.00 39.63 2.57
102 103 1.685302 GCAAACGCGTTGTCATCAAT 58.315 45.000 27.34 3.61 39.63 2.57
103 104 2.050691 GCAAACGCGTTGTCATCAATT 58.949 42.857 27.34 2.75 39.63 2.32
104 105 3.230355 GCAAACGCGTTGTCATCAATTA 58.770 40.909 27.34 0.00 39.63 1.40
105 106 3.057609 GCAAACGCGTTGTCATCAATTAC 59.942 43.478 27.34 0.00 39.63 1.89
106 107 3.465122 AACGCGTTGTCATCAATTACC 57.535 42.857 26.00 0.00 35.92 2.85
107 108 2.418692 ACGCGTTGTCATCAATTACCA 58.581 42.857 5.58 0.00 35.92 3.25
108 109 2.809119 ACGCGTTGTCATCAATTACCAA 59.191 40.909 5.58 0.00 35.92 3.67
109 110 3.251245 ACGCGTTGTCATCAATTACCAAA 59.749 39.130 5.58 0.00 35.92 3.28
110 111 4.222886 CGCGTTGTCATCAATTACCAAAA 58.777 39.130 0.00 0.00 35.92 2.44
111 112 4.087930 CGCGTTGTCATCAATTACCAAAAC 59.912 41.667 0.00 0.00 35.92 2.43
112 113 5.219633 GCGTTGTCATCAATTACCAAAACT 58.780 37.500 0.00 0.00 35.92 2.66
113 114 6.375377 GCGTTGTCATCAATTACCAAAACTA 58.625 36.000 0.00 0.00 35.92 2.24
114 115 6.304683 GCGTTGTCATCAATTACCAAAACTAC 59.695 38.462 0.00 0.00 35.92 2.73
115 116 7.356540 CGTTGTCATCAATTACCAAAACTACA 58.643 34.615 0.00 0.00 35.92 2.74
116 117 8.020819 CGTTGTCATCAATTACCAAAACTACAT 58.979 33.333 0.00 0.00 35.92 2.29
119 120 9.952030 TGTCATCAATTACCAAAACTACATAGA 57.048 29.630 0.00 0.00 0.00 1.98
128 129 6.578023 ACCAAAACTACATAGAGAGAGATGC 58.422 40.000 0.00 0.00 0.00 3.91
129 130 5.988561 CCAAAACTACATAGAGAGAGATGCC 59.011 44.000 0.00 0.00 0.00 4.40
130 131 6.183360 CCAAAACTACATAGAGAGAGATGCCT 60.183 42.308 0.00 0.00 0.00 4.75
131 132 7.271511 CAAAACTACATAGAGAGAGATGCCTT 58.728 38.462 0.00 0.00 0.00 4.35
132 133 8.417106 CAAAACTACATAGAGAGAGATGCCTTA 58.583 37.037 0.00 0.00 0.00 2.69
133 134 8.540507 AAACTACATAGAGAGAGATGCCTTAA 57.459 34.615 0.00 0.00 0.00 1.85
134 135 7.519032 ACTACATAGAGAGAGATGCCTTAAC 57.481 40.000 0.00 0.00 0.00 2.01
135 136 7.063593 ACTACATAGAGAGAGATGCCTTAACA 58.936 38.462 0.00 0.00 0.00 2.41
222 223 4.586001 ACTTTGCTTGGTGATTCATGACTT 59.414 37.500 0.00 0.00 0.00 3.01
247 248 1.204704 CAGTAGCATCGACAAGTGGGA 59.795 52.381 0.00 0.00 0.00 4.37
249 250 1.204941 GTAGCATCGACAAGTGGGAGT 59.795 52.381 0.00 0.00 0.00 3.85
278 279 6.971340 ACAGAGGTGGAGTATAGAGTCTTAA 58.029 40.000 0.00 0.00 0.00 1.85
299 300 8.002459 TCTTAACTTTCAGGGTGAAAACCTAAT 58.998 33.333 3.82 0.00 44.69 1.73
309 310 4.080526 GGTGAAAACCTAATCTCTGGCCTA 60.081 45.833 3.32 0.00 0.00 3.93
351 352 5.066505 AGTGACCTTGTTGAAGACATTGTTC 59.933 40.000 0.00 0.00 38.26 3.18
399 405 7.497909 GGGTGAAAACCTAAAATCTATGATCGA 59.502 37.037 0.00 0.00 0.00 3.59
489 501 1.658686 GGTGGTGGTTCGTGTTGCAA 61.659 55.000 0.00 0.00 0.00 4.08
505 517 6.348132 CGTGTTGCAACTACAAGGAATTGATA 60.348 38.462 28.61 1.09 0.00 2.15
516 528 5.116180 CAAGGAATTGATAACTGTAGCGGA 58.884 41.667 0.00 0.00 0.00 5.54
517 529 5.552870 AGGAATTGATAACTGTAGCGGAT 57.447 39.130 0.00 0.00 0.00 4.18
518 530 6.665992 AGGAATTGATAACTGTAGCGGATA 57.334 37.500 0.00 0.00 0.00 2.59
522 534 7.064728 GGAATTGATAACTGTAGCGGATATTCC 59.935 40.741 0.00 0.00 32.22 3.01
523 535 6.665992 TTGATAACTGTAGCGGATATTCCT 57.334 37.500 0.00 0.00 33.30 3.36
576 590 5.068329 TGTCTTTTTGTTGTGTGCATCCATA 59.932 36.000 0.00 0.00 0.00 2.74
605 619 2.473530 ACGACATTGTGTTGTTGCAG 57.526 45.000 0.00 0.00 42.03 4.41
608 622 3.119673 ACGACATTGTGTTGTTGCAGAAA 60.120 39.130 0.00 0.00 42.03 2.52
651 669 7.603651 TCTCTGCGATATTAAATACTCCCTTC 58.396 38.462 0.00 0.00 0.00 3.46
655 673 6.643770 TGCGATATTAAATACTCCCTTCGTTC 59.356 38.462 0.00 0.00 0.00 3.95
656 674 6.090493 GCGATATTAAATACTCCCTTCGTTCC 59.910 42.308 0.00 0.00 0.00 3.62
657 675 7.376615 CGATATTAAATACTCCCTTCGTTCCT 58.623 38.462 0.00 0.00 0.00 3.36
658 676 8.517878 CGATATTAAATACTCCCTTCGTTCCTA 58.482 37.037 0.00 0.00 0.00 2.94
665 683 9.916360 AAATACTCCCTTCGTTCCTAAATATTT 57.084 29.630 5.89 5.89 0.00 1.40
666 684 8.904099 ATACTCCCTTCGTTCCTAAATATTTG 57.096 34.615 11.05 1.40 0.00 2.32
667 685 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
668 686 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
669 687 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
670 688 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
671 689 7.886446 TCCCTTCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
672 690 8.520351 CCCTTCGTTCCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
673 691 9.908152 CCTTCGTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
701 719 8.804743 AGATATTTCAACACGTGACTATTTACG 58.195 33.333 25.01 0.00 45.19 3.18
702 720 5.579384 TTTCAACACGTGACTATTTACGG 57.421 39.130 25.01 0.00 44.07 4.02
703 721 4.502171 TCAACACGTGACTATTTACGGA 57.498 40.909 25.01 0.00 44.07 4.69
704 722 4.478699 TCAACACGTGACTATTTACGGAG 58.521 43.478 25.01 0.00 44.07 4.63
705 723 2.872370 ACACGTGACTATTTACGGAGC 58.128 47.619 25.01 0.00 44.07 4.70
706 724 2.229543 ACACGTGACTATTTACGGAGCA 59.770 45.455 25.01 0.00 44.07 4.26
707 725 2.852413 CACGTGACTATTTACGGAGCAG 59.148 50.000 10.90 0.00 44.07 4.24
708 726 2.751259 ACGTGACTATTTACGGAGCAGA 59.249 45.455 2.60 0.00 44.07 4.26
709 727 3.192001 ACGTGACTATTTACGGAGCAGAA 59.808 43.478 2.60 0.00 44.07 3.02
710 728 4.142227 ACGTGACTATTTACGGAGCAGAAT 60.142 41.667 2.60 0.00 44.07 2.40
711 729 4.207224 CGTGACTATTTACGGAGCAGAATG 59.793 45.833 0.00 0.00 36.71 2.67
712 730 5.348986 GTGACTATTTACGGAGCAGAATGA 58.651 41.667 0.00 0.00 39.69 2.57
713 731 5.460419 GTGACTATTTACGGAGCAGAATGAG 59.540 44.000 0.00 0.00 39.69 2.90
714 732 5.127194 TGACTATTTACGGAGCAGAATGAGT 59.873 40.000 0.00 0.00 39.69 3.41
715 733 5.352284 ACTATTTACGGAGCAGAATGAGTG 58.648 41.667 0.00 0.00 39.69 3.51
716 734 3.953712 TTTACGGAGCAGAATGAGTGA 57.046 42.857 0.00 0.00 39.69 3.41
717 735 3.953712 TTACGGAGCAGAATGAGTGAA 57.046 42.857 0.00 0.00 39.69 3.18
718 736 4.471904 TTACGGAGCAGAATGAGTGAAT 57.528 40.909 0.00 0.00 39.69 2.57
719 737 2.898705 ACGGAGCAGAATGAGTGAATC 58.101 47.619 0.00 0.00 39.69 2.52
720 738 2.499289 ACGGAGCAGAATGAGTGAATCT 59.501 45.455 0.00 0.00 39.69 2.40
721 739 3.701542 ACGGAGCAGAATGAGTGAATCTA 59.298 43.478 0.00 0.00 39.69 1.98
722 740 4.160439 ACGGAGCAGAATGAGTGAATCTAA 59.840 41.667 0.00 0.00 39.69 2.10
723 741 5.111989 CGGAGCAGAATGAGTGAATCTAAA 58.888 41.667 0.00 0.00 39.69 1.85
724 742 5.006165 CGGAGCAGAATGAGTGAATCTAAAC 59.994 44.000 0.00 0.00 39.69 2.01
725 743 6.112058 GGAGCAGAATGAGTGAATCTAAACT 58.888 40.000 0.00 0.00 39.69 2.66
726 744 6.257630 GGAGCAGAATGAGTGAATCTAAACTC 59.742 42.308 0.00 0.00 42.61 3.01
727 745 6.945218 AGCAGAATGAGTGAATCTAAACTCT 58.055 36.000 4.62 0.00 42.72 3.24
728 746 8.072321 AGCAGAATGAGTGAATCTAAACTCTA 57.928 34.615 4.62 0.00 42.72 2.43
729 747 8.535335 AGCAGAATGAGTGAATCTAAACTCTAA 58.465 33.333 4.62 0.00 42.72 2.10
730 748 9.155975 GCAGAATGAGTGAATCTAAACTCTAAA 57.844 33.333 4.62 0.00 42.72 1.85
757 775 9.769677 ATATGTCTATATACACCTGTACATGGT 57.230 33.333 10.21 10.21 38.53 3.55
759 777 8.631480 TGTCTATATACACCTGTACATGGTAG 57.369 38.462 14.25 11.73 35.80 3.18
760 778 8.222637 TGTCTATATACACCTGTACATGGTAGT 58.777 37.037 14.25 15.29 35.80 2.73
761 779 9.075678 GTCTATATACACCTGTACATGGTAGTT 57.924 37.037 14.25 6.99 35.80 2.24
762 780 9.293404 TCTATATACACCTGTACATGGTAGTTC 57.707 37.037 14.25 0.00 35.80 3.01
763 781 7.907841 ATATACACCTGTACATGGTAGTTCA 57.092 36.000 14.25 8.45 35.80 3.18
764 782 6.808321 ATACACCTGTACATGGTAGTTCAT 57.192 37.500 14.25 6.60 35.80 2.57
765 783 5.499004 ACACCTGTACATGGTAGTTCATT 57.501 39.130 14.25 0.00 35.80 2.57
766 784 5.876357 ACACCTGTACATGGTAGTTCATTT 58.124 37.500 14.25 0.00 35.80 2.32
767 785 5.705441 ACACCTGTACATGGTAGTTCATTTG 59.295 40.000 14.25 4.76 35.80 2.32
768 786 5.937540 CACCTGTACATGGTAGTTCATTTGA 59.062 40.000 14.25 0.00 35.80 2.69
769 787 6.429692 CACCTGTACATGGTAGTTCATTTGAA 59.570 38.462 14.25 0.00 35.80 2.69
770 788 7.001674 ACCTGTACATGGTAGTTCATTTGAAA 58.998 34.615 13.36 0.00 35.80 2.69
771 789 7.669722 ACCTGTACATGGTAGTTCATTTGAAAT 59.330 33.333 13.36 0.00 35.80 2.17
772 790 8.184192 CCTGTACATGGTAGTTCATTTGAAATC 58.816 37.037 0.00 0.00 35.58 2.17
773 791 8.862325 TGTACATGGTAGTTCATTTGAAATCT 57.138 30.769 0.00 0.00 35.58 2.40
774 792 8.946085 TGTACATGGTAGTTCATTTGAAATCTC 58.054 33.333 0.00 0.00 35.58 2.75
775 793 9.167311 GTACATGGTAGTTCATTTGAAATCTCT 57.833 33.333 0.00 0.00 35.58 3.10
777 795 9.739276 ACATGGTAGTTCATTTGAAATCTCTAA 57.261 29.630 0.00 0.00 35.58 2.10
803 821 8.655378 AAAGACAAATATTTAGAAACGAAGCG 57.345 30.769 0.00 0.00 0.00 4.68
804 822 7.591006 AGACAAATATTTAGAAACGAAGCGA 57.409 32.000 0.00 0.00 0.00 4.93
805 823 7.676393 AGACAAATATTTAGAAACGAAGCGAG 58.324 34.615 0.00 0.00 0.00 5.03
806 824 7.331193 AGACAAATATTTAGAAACGAAGCGAGT 59.669 33.333 0.00 0.00 0.00 4.18
807 825 8.470040 ACAAATATTTAGAAACGAAGCGAGTA 57.530 30.769 0.00 0.00 0.00 2.59
808 826 8.378421 ACAAATATTTAGAAACGAAGCGAGTAC 58.622 33.333 0.00 0.00 0.00 2.73
809 827 8.377681 CAAATATTTAGAAACGAAGCGAGTACA 58.622 33.333 0.00 0.00 0.00 2.90
810 828 8.644318 AATATTTAGAAACGAAGCGAGTACAT 57.356 30.769 0.00 0.00 0.00 2.29
811 829 6.963049 ATTTAGAAACGAAGCGAGTACATT 57.037 33.333 0.00 0.00 0.00 2.71
812 830 6.385537 TTTAGAAACGAAGCGAGTACATTC 57.614 37.500 0.00 0.00 0.00 2.67
813 831 3.251571 AGAAACGAAGCGAGTACATTCC 58.748 45.455 0.00 0.00 0.00 3.01
814 832 2.736144 AACGAAGCGAGTACATTCCA 57.264 45.000 0.00 0.00 0.00 3.53
815 833 2.961526 ACGAAGCGAGTACATTCCAT 57.038 45.000 0.00 0.00 0.00 3.41
816 834 3.247006 ACGAAGCGAGTACATTCCATT 57.753 42.857 0.00 0.00 0.00 3.16
817 835 3.596214 ACGAAGCGAGTACATTCCATTT 58.404 40.909 0.00 0.00 0.00 2.32
818 836 3.370978 ACGAAGCGAGTACATTCCATTTG 59.629 43.478 0.00 0.00 0.00 2.32
819 837 3.370978 CGAAGCGAGTACATTCCATTTGT 59.629 43.478 0.00 0.00 0.00 2.83
820 838 4.492570 CGAAGCGAGTACATTCCATTTGTC 60.493 45.833 0.00 0.00 0.00 3.18
821 839 3.937814 AGCGAGTACATTCCATTTGTCA 58.062 40.909 0.00 0.00 0.00 3.58
822 840 4.517285 AGCGAGTACATTCCATTTGTCAT 58.483 39.130 0.00 0.00 0.00 3.06
823 841 5.670485 AGCGAGTACATTCCATTTGTCATA 58.330 37.500 0.00 0.00 0.00 2.15
851 943 2.806288 AAATATTCGAGCGTGTGTGC 57.194 45.000 0.00 0.00 0.00 4.57
868 960 2.434331 CTGGGGTTTGAGGCGGAA 59.566 61.111 0.00 0.00 0.00 4.30
941 1054 1.676006 CACTTCACCTCCCAAACACAC 59.324 52.381 0.00 0.00 0.00 3.82
942 1055 1.283613 ACTTCACCTCCCAAACACACA 59.716 47.619 0.00 0.00 0.00 3.72
943 1056 1.676006 CTTCACCTCCCAAACACACAC 59.324 52.381 0.00 0.00 0.00 3.82
945 1058 0.738389 CACCTCCCAAACACACACAC 59.262 55.000 0.00 0.00 0.00 3.82
1496 1670 2.657237 CCGCCTTCGTCAAGACCT 59.343 61.111 0.00 0.00 0.00 3.85
1561 1735 2.306847 TGGAGCAAGAAAACTTCCACC 58.693 47.619 0.00 0.00 0.00 4.61
1605 1785 5.297527 TCTTGGATCGGATGATTGTTGATTG 59.702 40.000 0.00 0.00 34.09 2.67
1611 1791 7.201461 GGATCGGATGATTGTTGATTGTTTTTG 60.201 37.037 0.00 0.00 34.09 2.44
1806 2022 2.031157 CGTCCACCATGACCTTGAAAAC 60.031 50.000 0.00 0.00 31.35 2.43
1918 2138 8.152898 TCTACTTTTACTTTTAGGAACTCCACC 58.847 37.037 0.00 0.00 41.75 4.61
1919 2139 6.665695 ACTTTTACTTTTAGGAACTCCACCA 58.334 36.000 0.00 0.00 41.75 4.17
1921 2141 5.633655 TTACTTTTAGGAACTCCACCACA 57.366 39.130 0.00 0.00 41.75 4.17
1922 2142 4.724279 ACTTTTAGGAACTCCACCACAT 57.276 40.909 0.00 0.00 41.75 3.21
1923 2143 5.061721 ACTTTTAGGAACTCCACCACATT 57.938 39.130 0.00 0.00 41.75 2.71
1927 2147 5.836024 TTAGGAACTCCACCACATTTAGT 57.164 39.130 0.00 0.00 41.75 2.24
1928 2148 4.021102 AGGAACTCCACCACATTTAGTG 57.979 45.455 0.00 0.00 42.64 2.74
1929 2149 3.394606 AGGAACTCCACCACATTTAGTGT 59.605 43.478 0.00 0.00 41.94 3.55
1930 2150 4.141251 AGGAACTCCACCACATTTAGTGTT 60.141 41.667 0.00 0.00 41.94 3.32
1997 2235 1.737838 TGCGGCCTTGTGATTCTTAG 58.262 50.000 0.00 0.00 0.00 2.18
2133 2433 3.884091 AGACTAGTACTAGGGTCATTGCG 59.116 47.826 29.05 5.98 37.49 4.85
2261 2657 2.247311 CGAGAAATTCGGCCTGTTTG 57.753 50.000 0.00 0.00 45.54 2.93
2418 2883 1.854939 TGAAGGCCCAATCATGAGGAT 59.145 47.619 0.00 0.00 38.05 3.24
2519 2993 4.082026 GCAAACCCAGACTATGAAAGCAAT 60.082 41.667 0.00 0.00 0.00 3.56
2584 3058 1.069227 GCTTCCCACACAATGTTCGAC 60.069 52.381 0.00 0.00 0.00 4.20
2588 3062 1.573829 CCACACAATGTTCGACCGGG 61.574 60.000 6.32 0.00 0.00 5.73
2952 3817 6.406961 CCACATGTCTACAAGATGGCTACTAA 60.407 42.308 0.00 0.00 32.96 2.24
2965 3830 4.413760 TGGCTACTAACCAGAGTTACACT 58.586 43.478 0.00 0.00 37.42 3.55
3027 3892 2.028020 AGAAAGAAGACATGTCCGACCC 60.028 50.000 22.21 7.78 0.00 4.46
3081 3946 6.109359 CCTCTTCGTGAATCCTTTGTAGAAT 58.891 40.000 0.00 0.00 0.00 2.40
3085 3950 3.689161 CGTGAATCCTTTGTAGAATGGCA 59.311 43.478 0.00 0.00 0.00 4.92
3146 4011 2.951642 CGGTGTTTCCATATCTGCCAAT 59.048 45.455 0.00 0.00 35.57 3.16
3169 4034 4.820897 AGACGAGCAAGATAATTGTGTGA 58.179 39.130 0.00 0.00 0.00 3.58
3216 4081 0.674581 TGCATCGAAGCACTCCAAGG 60.675 55.000 11.93 0.00 40.11 3.61
3291 4181 4.634443 GCGAAAACACAGGATACCAATAGT 59.366 41.667 0.00 0.00 37.17 2.12
3306 4196 3.126831 CAATAGTTGGCTGATCGTCTCC 58.873 50.000 0.00 0.00 0.00 3.71
3393 4290 6.316390 CCAAGGTCCAACATCTGTTCTTATAC 59.684 42.308 0.00 0.00 35.83 1.47
3464 4361 1.673665 CTGTGGCAGCCAGGTCTTC 60.674 63.158 16.83 1.77 32.34 2.87
3483 4380 4.216902 TCTTCTTCACGTCCAAAGTATCGA 59.783 41.667 0.00 0.00 0.00 3.59
3503 4400 0.040514 CTCGCGTAGGCAGATCTCAG 60.041 60.000 5.77 0.00 39.92 3.35
3510 4407 4.521062 GCAGATCTCAGCCGCGGT 62.521 66.667 28.70 11.01 0.00 5.68
3511 4408 2.279120 CAGATCTCAGCCGCGGTC 60.279 66.667 28.70 19.09 0.00 4.79
3512 4409 2.441164 AGATCTCAGCCGCGGTCT 60.441 61.111 28.70 21.17 0.00 3.85
3513 4410 2.279120 GATCTCAGCCGCGGTCTG 60.279 66.667 31.20 31.20 0.00 3.51
3514 4411 3.781770 GATCTCAGCCGCGGTCTGG 62.782 68.421 33.83 26.94 32.63 3.86
3550 4572 4.463879 CAGCCAGAGCGTCCCCAG 62.464 72.222 0.00 0.00 46.67 4.45
3552 4574 4.021925 GCCAGAGCGTCCCCAGTT 62.022 66.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.262009 TCCTCTCGGAGTTCTAATCAAAGA 58.738 41.667 4.69 0.00 33.30 2.52
2 3 5.105310 CCTTCCTCTCGGAGTTCTAATCAAA 60.105 44.000 4.69 0.00 41.25 2.69
3 4 4.402793 CCTTCCTCTCGGAGTTCTAATCAA 59.597 45.833 4.69 0.00 41.25 2.57
4 5 3.954904 CCTTCCTCTCGGAGTTCTAATCA 59.045 47.826 4.69 0.00 41.25 2.57
5 6 3.319689 CCCTTCCTCTCGGAGTTCTAATC 59.680 52.174 4.69 0.00 41.25 1.75
7 8 2.310945 TCCCTTCCTCTCGGAGTTCTAA 59.689 50.000 4.69 0.00 41.25 2.10
8 9 1.921049 TCCCTTCCTCTCGGAGTTCTA 59.079 52.381 4.69 0.00 41.25 2.10
9 10 0.705253 TCCCTTCCTCTCGGAGTTCT 59.295 55.000 4.69 0.00 41.25 3.01
10 11 1.684450 GATCCCTTCCTCTCGGAGTTC 59.316 57.143 4.69 0.00 41.25 3.01
11 12 1.783071 GATCCCTTCCTCTCGGAGTT 58.217 55.000 4.69 0.00 41.25 3.01
12 13 0.466555 CGATCCCTTCCTCTCGGAGT 60.467 60.000 4.69 0.00 41.25 3.85
13 14 0.466555 ACGATCCCTTCCTCTCGGAG 60.467 60.000 0.00 0.00 41.25 4.63
14 15 0.465824 GACGATCCCTTCCTCTCGGA 60.466 60.000 0.00 0.00 37.60 4.55
15 16 0.466555 AGACGATCCCTTCCTCTCGG 60.467 60.000 0.00 0.00 35.52 4.63
16 17 0.948678 GAGACGATCCCTTCCTCTCG 59.051 60.000 0.00 0.00 37.17 4.04
17 18 0.948678 CGAGACGATCCCTTCCTCTC 59.051 60.000 0.00 0.00 34.79 3.20
18 19 0.256464 ACGAGACGATCCCTTCCTCT 59.744 55.000 0.00 0.00 0.00 3.69
19 20 0.382515 CACGAGACGATCCCTTCCTC 59.617 60.000 0.00 0.00 0.00 3.71
20 21 1.668101 GCACGAGACGATCCCTTCCT 61.668 60.000 0.00 0.00 0.00 3.36
21 22 1.227002 GCACGAGACGATCCCTTCC 60.227 63.158 0.00 0.00 0.00 3.46
22 23 1.227002 GGCACGAGACGATCCCTTC 60.227 63.158 0.00 0.00 0.00 3.46
23 24 1.541310 TTGGCACGAGACGATCCCTT 61.541 55.000 0.00 0.00 0.00 3.95
24 25 1.541310 TTTGGCACGAGACGATCCCT 61.541 55.000 0.00 0.00 0.00 4.20
25 26 1.079405 TTTGGCACGAGACGATCCC 60.079 57.895 0.00 0.00 0.00 3.85
26 27 1.084370 CCTTTGGCACGAGACGATCC 61.084 60.000 0.00 0.00 0.00 3.36
27 28 0.108804 TCCTTTGGCACGAGACGATC 60.109 55.000 0.00 0.00 0.00 3.69
28 29 0.537188 ATCCTTTGGCACGAGACGAT 59.463 50.000 0.00 0.00 0.00 3.73
29 30 0.389817 CATCCTTTGGCACGAGACGA 60.390 55.000 0.00 0.00 0.00 4.20
30 31 0.389817 TCATCCTTTGGCACGAGACG 60.390 55.000 0.00 0.00 0.00 4.18
31 32 1.808411 TTCATCCTTTGGCACGAGAC 58.192 50.000 0.00 0.00 0.00 3.36
32 33 2.237143 AGATTCATCCTTTGGCACGAGA 59.763 45.455 0.00 0.00 0.00 4.04
33 34 2.611292 GAGATTCATCCTTTGGCACGAG 59.389 50.000 0.00 0.00 0.00 4.18
34 35 2.237143 AGAGATTCATCCTTTGGCACGA 59.763 45.455 0.00 0.00 0.00 4.35
35 36 2.353889 CAGAGATTCATCCTTTGGCACG 59.646 50.000 0.00 0.00 0.00 5.34
36 37 3.614092 TCAGAGATTCATCCTTTGGCAC 58.386 45.455 0.00 0.00 0.00 5.01
37 38 4.305539 TTCAGAGATTCATCCTTTGGCA 57.694 40.909 0.00 0.00 0.00 4.92
38 39 5.589192 CATTTCAGAGATTCATCCTTTGGC 58.411 41.667 0.00 0.00 0.00 4.52
39 40 5.360144 AGCATTTCAGAGATTCATCCTTTGG 59.640 40.000 0.00 0.00 0.00 3.28
40 41 6.095021 TGAGCATTTCAGAGATTCATCCTTTG 59.905 38.462 0.00 0.00 0.00 2.77
41 42 6.185511 TGAGCATTTCAGAGATTCATCCTTT 58.814 36.000 0.00 0.00 0.00 3.11
42 43 5.752650 TGAGCATTTCAGAGATTCATCCTT 58.247 37.500 0.00 0.00 0.00 3.36
43 44 5.369409 TGAGCATTTCAGAGATTCATCCT 57.631 39.130 0.00 0.00 0.00 3.24
44 45 6.446781 TTTGAGCATTTCAGAGATTCATCC 57.553 37.500 0.00 0.00 37.07 3.51
45 46 5.972382 GCTTTGAGCATTTCAGAGATTCATC 59.028 40.000 0.00 0.00 39.73 2.92
46 47 5.892568 GCTTTGAGCATTTCAGAGATTCAT 58.107 37.500 0.00 0.00 39.73 2.57
47 48 5.306532 GCTTTGAGCATTTCAGAGATTCA 57.693 39.130 0.00 0.00 39.73 2.57
61 62 2.094417 GGACTAATCGTGTGCTTTGAGC 59.906 50.000 0.00 0.00 42.82 4.26
62 63 2.345641 CGGACTAATCGTGTGCTTTGAG 59.654 50.000 0.00 0.00 0.00 3.02
63 64 2.333926 CGGACTAATCGTGTGCTTTGA 58.666 47.619 0.00 0.00 0.00 2.69
64 65 1.201921 GCGGACTAATCGTGTGCTTTG 60.202 52.381 0.00 0.00 0.00 2.77
65 66 1.076332 GCGGACTAATCGTGTGCTTT 58.924 50.000 0.00 0.00 0.00 3.51
66 67 0.037697 TGCGGACTAATCGTGTGCTT 60.038 50.000 0.00 0.00 0.00 3.91
67 68 0.037697 TTGCGGACTAATCGTGTGCT 60.038 50.000 0.00 0.00 0.00 4.40
68 69 0.793861 TTTGCGGACTAATCGTGTGC 59.206 50.000 0.00 0.00 0.00 4.57
69 70 1.201769 CGTTTGCGGACTAATCGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
70 71 1.065358 CGTTTGCGGACTAATCGTGT 58.935 50.000 0.00 0.00 0.00 4.49
71 72 0.247145 GCGTTTGCGGACTAATCGTG 60.247 55.000 0.00 0.00 38.78 4.35
72 73 2.075761 GCGTTTGCGGACTAATCGT 58.924 52.632 0.00 0.00 38.78 3.73
73 74 4.946766 GCGTTTGCGGACTAATCG 57.053 55.556 0.00 0.00 38.78 3.34
83 84 1.685302 ATTGATGACAACGCGTTTGC 58.315 45.000 24.21 17.32 39.01 3.68
84 85 3.602062 GGTAATTGATGACAACGCGTTTG 59.398 43.478 24.21 19.40 38.90 2.93
85 86 3.251245 TGGTAATTGATGACAACGCGTTT 59.749 39.130 24.21 13.96 38.90 3.60
86 87 2.809119 TGGTAATTGATGACAACGCGTT 59.191 40.909 20.79 20.79 38.90 4.84
87 88 2.418692 TGGTAATTGATGACAACGCGT 58.581 42.857 5.58 5.58 38.90 6.01
88 89 3.463533 TTGGTAATTGATGACAACGCG 57.536 42.857 3.53 3.53 38.90 6.01
89 90 5.219633 AGTTTTGGTAATTGATGACAACGC 58.780 37.500 0.00 0.00 38.90 4.84
90 91 7.356540 TGTAGTTTTGGTAATTGATGACAACG 58.643 34.615 0.00 0.00 38.90 4.10
93 94 9.952030 TCTATGTAGTTTTGGTAATTGATGACA 57.048 29.630 0.00 0.00 0.00 3.58
102 103 8.198109 GCATCTCTCTCTATGTAGTTTTGGTAA 58.802 37.037 0.00 0.00 0.00 2.85
103 104 7.201920 GGCATCTCTCTCTATGTAGTTTTGGTA 60.202 40.741 0.00 0.00 0.00 3.25
104 105 6.407525 GGCATCTCTCTCTATGTAGTTTTGGT 60.408 42.308 0.00 0.00 0.00 3.67
105 106 5.988561 GGCATCTCTCTCTATGTAGTTTTGG 59.011 44.000 0.00 0.00 0.00 3.28
106 107 6.815089 AGGCATCTCTCTCTATGTAGTTTTG 58.185 40.000 0.00 0.00 0.00 2.44
107 108 7.430760 AAGGCATCTCTCTCTATGTAGTTTT 57.569 36.000 0.00 0.00 0.00 2.43
108 109 8.417884 GTTAAGGCATCTCTCTCTATGTAGTTT 58.582 37.037 0.00 0.00 0.00 2.66
109 110 7.561722 TGTTAAGGCATCTCTCTCTATGTAGTT 59.438 37.037 0.00 0.00 0.00 2.24
110 111 7.063593 TGTTAAGGCATCTCTCTCTATGTAGT 58.936 38.462 0.00 0.00 0.00 2.73
111 112 7.517614 TGTTAAGGCATCTCTCTCTATGTAG 57.482 40.000 0.00 0.00 0.00 2.74
112 113 7.898014 TTGTTAAGGCATCTCTCTCTATGTA 57.102 36.000 0.00 0.00 0.00 2.29
113 114 6.798427 TTGTTAAGGCATCTCTCTCTATGT 57.202 37.500 0.00 0.00 0.00 2.29
114 115 7.714377 ACATTTGTTAAGGCATCTCTCTCTATG 59.286 37.037 0.00 0.00 0.00 2.23
115 116 7.800092 ACATTTGTTAAGGCATCTCTCTCTAT 58.200 34.615 0.00 0.00 0.00 1.98
116 117 7.093333 TGACATTTGTTAAGGCATCTCTCTCTA 60.093 37.037 0.00 0.00 0.00 2.43
117 118 6.059787 ACATTTGTTAAGGCATCTCTCTCT 57.940 37.500 0.00 0.00 0.00 3.10
118 119 5.877012 TGACATTTGTTAAGGCATCTCTCTC 59.123 40.000 0.00 0.00 0.00 3.20
119 120 5.809001 TGACATTTGTTAAGGCATCTCTCT 58.191 37.500 0.00 0.00 0.00 3.10
120 121 6.459298 CCATGACATTTGTTAAGGCATCTCTC 60.459 42.308 0.00 0.00 0.00 3.20
121 122 5.359009 CCATGACATTTGTTAAGGCATCTCT 59.641 40.000 0.00 0.00 0.00 3.10
122 123 5.126061 ACCATGACATTTGTTAAGGCATCTC 59.874 40.000 0.00 0.00 0.00 2.75
123 124 5.018809 ACCATGACATTTGTTAAGGCATCT 58.981 37.500 0.00 0.00 0.00 2.90
124 125 5.104374 CACCATGACATTTGTTAAGGCATC 58.896 41.667 0.00 0.00 0.00 3.91
125 126 4.081531 CCACCATGACATTTGTTAAGGCAT 60.082 41.667 0.00 0.00 0.00 4.40
126 127 3.257873 CCACCATGACATTTGTTAAGGCA 59.742 43.478 0.00 0.00 0.00 4.75
127 128 3.848726 CCACCATGACATTTGTTAAGGC 58.151 45.455 0.00 0.00 0.00 4.35
128 129 3.511146 AGCCACCATGACATTTGTTAAGG 59.489 43.478 0.00 0.00 0.00 2.69
129 130 4.218200 TCAGCCACCATGACATTTGTTAAG 59.782 41.667 0.00 0.00 0.00 1.85
130 131 4.148079 TCAGCCACCATGACATTTGTTAA 58.852 39.130 0.00 0.00 0.00 2.01
131 132 3.758023 CTCAGCCACCATGACATTTGTTA 59.242 43.478 0.00 0.00 0.00 2.41
132 133 2.559668 CTCAGCCACCATGACATTTGTT 59.440 45.455 0.00 0.00 0.00 2.83
133 134 2.165167 CTCAGCCACCATGACATTTGT 58.835 47.619 0.00 0.00 0.00 2.83
134 135 1.475280 CCTCAGCCACCATGACATTTG 59.525 52.381 0.00 0.00 0.00 2.32
135 136 1.076024 ACCTCAGCCACCATGACATTT 59.924 47.619 0.00 0.00 0.00 2.32
222 223 2.492088 ACTTGTCGATGCTACTGCTACA 59.508 45.455 0.00 0.00 40.48 2.74
247 248 1.056700 ACTCCACCTCTGTTGCCACT 61.057 55.000 0.00 0.00 0.00 4.00
249 250 1.656587 ATACTCCACCTCTGTTGCCA 58.343 50.000 0.00 0.00 0.00 4.92
257 258 7.885009 AAGTTAAGACTCTATACTCCACCTC 57.115 40.000 0.00 0.00 34.21 3.85
278 279 5.953571 AGATTAGGTTTTCACCCTGAAAGT 58.046 37.500 0.00 0.00 45.77 2.66
299 300 3.420893 CACAACCAATTTAGGCCAGAGA 58.579 45.455 5.01 0.00 0.00 3.10
309 310 0.393820 CTGCCAGGCACAACCAATTT 59.606 50.000 11.22 0.00 43.14 1.82
351 352 0.317770 GAGAAGATCCGCGCTCTCAG 60.318 60.000 15.02 0.00 0.00 3.35
489 501 6.757010 CGCTACAGTTATCAATTCCTTGTAGT 59.243 38.462 9.61 0.00 38.96 2.73
505 517 5.615925 AGAAAGGAATATCCGCTACAGTT 57.384 39.130 0.00 0.00 42.75 3.16
560 574 4.766373 AGACATTTATGGATGCACACAACA 59.234 37.500 0.00 0.00 0.00 3.33
595 609 0.746063 CCCAGCTTTCTGCAACAACA 59.254 50.000 0.00 0.00 45.94 3.33
605 619 6.995091 AGAGATATCAATTACACCCAGCTTTC 59.005 38.462 5.32 0.00 0.00 2.62
608 622 5.744300 GCAGAGATATCAATTACACCCAGCT 60.744 44.000 5.32 0.00 0.00 4.24
644 662 7.048512 AGACAAATATTTAGGAACGAAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
675 693 8.804743 CGTAAATAGTCACGTGTTGAAATATCT 58.195 33.333 16.51 0.00 35.39 1.98
676 694 8.054236 CCGTAAATAGTCACGTGTTGAAATATC 58.946 37.037 16.51 0.56 35.39 1.63
677 695 7.760794 TCCGTAAATAGTCACGTGTTGAAATAT 59.239 33.333 16.51 2.21 35.39 1.28
678 696 7.089538 TCCGTAAATAGTCACGTGTTGAAATA 58.910 34.615 16.51 0.00 35.39 1.40
679 697 5.927689 TCCGTAAATAGTCACGTGTTGAAAT 59.072 36.000 16.51 0.00 35.39 2.17
680 698 5.288015 TCCGTAAATAGTCACGTGTTGAAA 58.712 37.500 16.51 0.00 35.39 2.69
681 699 4.869215 TCCGTAAATAGTCACGTGTTGAA 58.131 39.130 16.51 0.14 35.39 2.69
682 700 4.478699 CTCCGTAAATAGTCACGTGTTGA 58.521 43.478 16.51 1.81 36.44 3.18
683 701 3.060363 GCTCCGTAAATAGTCACGTGTTG 59.940 47.826 16.51 0.00 36.44 3.33
684 702 3.248266 GCTCCGTAAATAGTCACGTGTT 58.752 45.455 16.51 7.97 36.44 3.32
685 703 2.229543 TGCTCCGTAAATAGTCACGTGT 59.770 45.455 16.51 0.00 36.44 4.49
686 704 2.852413 CTGCTCCGTAAATAGTCACGTG 59.148 50.000 9.94 9.94 36.44 4.49
687 705 2.751259 TCTGCTCCGTAAATAGTCACGT 59.249 45.455 0.00 0.00 36.44 4.49
688 706 3.416119 TCTGCTCCGTAAATAGTCACG 57.584 47.619 0.00 0.00 37.89 4.35
689 707 5.348986 TCATTCTGCTCCGTAAATAGTCAC 58.651 41.667 0.00 0.00 0.00 3.67
690 708 5.127194 ACTCATTCTGCTCCGTAAATAGTCA 59.873 40.000 0.00 0.00 0.00 3.41
691 709 5.460419 CACTCATTCTGCTCCGTAAATAGTC 59.540 44.000 0.00 0.00 0.00 2.59
692 710 5.127194 TCACTCATTCTGCTCCGTAAATAGT 59.873 40.000 0.00 0.00 0.00 2.12
693 711 5.592054 TCACTCATTCTGCTCCGTAAATAG 58.408 41.667 0.00 0.00 0.00 1.73
694 712 5.592104 TCACTCATTCTGCTCCGTAAATA 57.408 39.130 0.00 0.00 0.00 1.40
695 713 4.471904 TCACTCATTCTGCTCCGTAAAT 57.528 40.909 0.00 0.00 0.00 1.40
696 714 3.953712 TCACTCATTCTGCTCCGTAAA 57.046 42.857 0.00 0.00 0.00 2.01
697 715 3.953712 TTCACTCATTCTGCTCCGTAA 57.046 42.857 0.00 0.00 0.00 3.18
698 716 3.701542 AGATTCACTCATTCTGCTCCGTA 59.298 43.478 0.00 0.00 0.00 4.02
699 717 2.499289 AGATTCACTCATTCTGCTCCGT 59.501 45.455 0.00 0.00 0.00 4.69
700 718 3.176552 AGATTCACTCATTCTGCTCCG 57.823 47.619 0.00 0.00 0.00 4.63
701 719 6.112058 AGTTTAGATTCACTCATTCTGCTCC 58.888 40.000 0.00 0.00 0.00 4.70
702 720 7.041107 AGAGTTTAGATTCACTCATTCTGCTC 58.959 38.462 2.36 0.00 41.77 4.26
703 721 6.945218 AGAGTTTAGATTCACTCATTCTGCT 58.055 36.000 2.36 0.00 41.77 4.24
704 722 8.709386 TTAGAGTTTAGATTCACTCATTCTGC 57.291 34.615 2.36 0.00 41.77 4.26
731 749 9.769677 ACCATGTACAGGTGTATATAGACATAT 57.230 33.333 14.00 0.00 38.13 1.78
733 751 9.244292 CTACCATGTACAGGTGTATATAGACAT 57.756 37.037 20.68 1.84 40.26 3.06
734 752 8.222637 ACTACCATGTACAGGTGTATATAGACA 58.777 37.037 20.68 0.00 40.26 3.41
735 753 8.632906 ACTACCATGTACAGGTGTATATAGAC 57.367 38.462 20.68 1.36 40.26 2.59
736 754 9.293404 GAACTACCATGTACAGGTGTATATAGA 57.707 37.037 20.68 4.21 40.26 1.98
737 755 9.074576 TGAACTACCATGTACAGGTGTATATAG 57.925 37.037 20.68 13.75 40.26 1.31
738 756 8.999905 TGAACTACCATGTACAGGTGTATATA 57.000 34.615 20.68 5.28 40.26 0.86
739 757 7.907841 TGAACTACCATGTACAGGTGTATAT 57.092 36.000 20.68 9.12 40.26 0.86
740 758 7.907841 ATGAACTACCATGTACAGGTGTATA 57.092 36.000 20.68 12.15 40.26 1.47
741 759 6.808321 ATGAACTACCATGTACAGGTGTAT 57.192 37.500 20.68 10.40 40.26 2.29
742 760 6.614694 AATGAACTACCATGTACAGGTGTA 57.385 37.500 20.68 14.46 40.26 2.90
743 761 5.499004 AATGAACTACCATGTACAGGTGT 57.501 39.130 20.68 14.17 40.26 4.16
744 762 5.937540 TCAAATGAACTACCATGTACAGGTG 59.062 40.000 20.68 14.75 40.26 4.00
745 763 6.121776 TCAAATGAACTACCATGTACAGGT 57.878 37.500 17.48 17.48 43.14 4.00
746 764 7.447374 TTTCAAATGAACTACCATGTACAGG 57.553 36.000 0.33 0.00 33.13 4.00
747 765 8.950210 AGATTTCAAATGAACTACCATGTACAG 58.050 33.333 0.33 0.00 33.13 2.74
748 766 8.862325 AGATTTCAAATGAACTACCATGTACA 57.138 30.769 0.00 0.00 33.13 2.90
749 767 9.167311 AGAGATTTCAAATGAACTACCATGTAC 57.833 33.333 0.00 0.00 33.13 2.90
751 769 9.739276 TTAGAGATTTCAAATGAACTACCATGT 57.261 29.630 0.00 0.00 33.13 3.21
777 795 9.113876 CGCTTCGTTTCTAAATATTTGTCTTTT 57.886 29.630 11.05 0.00 0.00 2.27
778 796 8.500773 TCGCTTCGTTTCTAAATATTTGTCTTT 58.499 29.630 11.05 0.00 0.00 2.52
779 797 8.025243 TCGCTTCGTTTCTAAATATTTGTCTT 57.975 30.769 11.05 0.00 0.00 3.01
780 798 7.331193 ACTCGCTTCGTTTCTAAATATTTGTCT 59.669 33.333 11.05 0.00 0.00 3.41
781 799 7.453838 ACTCGCTTCGTTTCTAAATATTTGTC 58.546 34.615 11.05 0.00 0.00 3.18
782 800 7.360575 ACTCGCTTCGTTTCTAAATATTTGT 57.639 32.000 11.05 0.00 0.00 2.83
783 801 8.377681 TGTACTCGCTTCGTTTCTAAATATTTG 58.622 33.333 11.05 1.65 0.00 2.32
784 802 8.470040 TGTACTCGCTTCGTTTCTAAATATTT 57.530 30.769 5.89 5.89 0.00 1.40
785 803 8.644318 ATGTACTCGCTTCGTTTCTAAATATT 57.356 30.769 0.00 0.00 0.00 1.28
786 804 8.644318 AATGTACTCGCTTCGTTTCTAAATAT 57.356 30.769 0.00 0.00 0.00 1.28
787 805 7.221452 GGAATGTACTCGCTTCGTTTCTAAATA 59.779 37.037 0.00 0.00 0.00 1.40
788 806 6.035758 GGAATGTACTCGCTTCGTTTCTAAAT 59.964 38.462 0.00 0.00 0.00 1.40
789 807 5.346822 GGAATGTACTCGCTTCGTTTCTAAA 59.653 40.000 0.00 0.00 0.00 1.85
790 808 4.860907 GGAATGTACTCGCTTCGTTTCTAA 59.139 41.667 0.00 0.00 0.00 2.10
791 809 4.082625 TGGAATGTACTCGCTTCGTTTCTA 60.083 41.667 0.00 0.00 0.00 2.10
792 810 3.251571 GGAATGTACTCGCTTCGTTTCT 58.748 45.455 0.00 0.00 0.00 2.52
793 811 2.991190 TGGAATGTACTCGCTTCGTTTC 59.009 45.455 0.00 0.00 0.00 2.78
794 812 3.034721 TGGAATGTACTCGCTTCGTTT 57.965 42.857 0.00 0.00 0.00 3.60
795 813 2.736144 TGGAATGTACTCGCTTCGTT 57.264 45.000 0.00 0.00 0.00 3.85
796 814 2.961526 ATGGAATGTACTCGCTTCGT 57.038 45.000 0.00 0.00 0.00 3.85
797 815 3.370978 ACAAATGGAATGTACTCGCTTCG 59.629 43.478 0.00 0.00 0.00 3.79
798 816 4.391830 TGACAAATGGAATGTACTCGCTTC 59.608 41.667 0.00 0.00 0.00 3.86
799 817 4.323417 TGACAAATGGAATGTACTCGCTT 58.677 39.130 0.00 0.00 0.00 4.68
800 818 3.937814 TGACAAATGGAATGTACTCGCT 58.062 40.909 0.00 0.00 0.00 4.93
801 819 4.882671 ATGACAAATGGAATGTACTCGC 57.117 40.909 0.00 0.00 0.00 5.03
840 858 4.626081 ACCCCAGCACACACGCTC 62.626 66.667 0.00 0.00 41.38 5.03
842 860 3.216292 AAACCCCAGCACACACGC 61.216 61.111 0.00 0.00 0.00 5.34
844 862 1.455383 CCTCAAACCCCAGCACACAC 61.455 60.000 0.00 0.00 0.00 3.82
845 863 1.152777 CCTCAAACCCCAGCACACA 60.153 57.895 0.00 0.00 0.00 3.72
847 865 2.203480 GCCTCAAACCCCAGCACA 60.203 61.111 0.00 0.00 0.00 4.57
851 943 1.675641 CTTCCGCCTCAAACCCCAG 60.676 63.158 0.00 0.00 0.00 4.45
877 969 0.245539 TAACGTGGCCCTTCTTCGAG 59.754 55.000 0.00 0.00 0.00 4.04
879 971 0.037605 AGTAACGTGGCCCTTCTTCG 60.038 55.000 0.00 0.00 0.00 3.79
943 1056 4.263209 TTTTGCAGCCGCCGTGTG 62.263 61.111 0.00 0.00 37.32 3.82
945 1058 4.263209 TGTTTTGCAGCCGCCGTG 62.263 61.111 0.00 0.00 37.32 4.94
956 1079 1.028905 TCCGCTTCTTGGGTGTTTTG 58.971 50.000 0.00 0.00 0.00 2.44
1125 1279 3.844562 CTTGGGGTTGGGGTTGGGG 62.845 68.421 0.00 0.00 0.00 4.96
1131 1285 4.247130 TTGGGCTTGGGGTTGGGG 62.247 66.667 0.00 0.00 0.00 4.96
1214 1373 4.517285 GAGTCATATATACGGGTACGGGA 58.483 47.826 0.00 0.00 46.48 5.14
1328 1496 4.253257 CGCGCCCTCGAGGTAGTC 62.253 72.222 29.25 16.20 38.26 2.59
1366 1534 2.102749 TCGTATGCGGCGTACACC 59.897 61.111 26.73 5.83 38.89 4.16
1387 1555 2.004733 GTCGGTCCTTTCCAAATACGG 58.995 52.381 0.00 0.00 0.00 4.02
1496 1670 4.980805 GGCGCAGACGTGGGTCAA 62.981 66.667 10.83 0.00 45.92 3.18
1561 1735 0.677731 ACCACATTGCCTCACATCCG 60.678 55.000 0.00 0.00 0.00 4.18
1635 1833 0.179062 AGTGCTTCGGGATCATCTGC 60.179 55.000 0.00 0.00 0.00 4.26
1806 2022 0.732538 GGAAAACCAAGCAATCGCCG 60.733 55.000 0.00 0.00 39.83 6.46
1836 2052 1.334869 CTCACCTTGAACTTTGCGCTT 59.665 47.619 9.73 0.00 0.00 4.68
1884 2102 8.768019 TCCTAAAAGTAAAAGTAGAGCGTTTTC 58.232 33.333 0.00 0.00 31.56 2.29
1923 2143 9.884636 ACAAGTTATATATGCACTCAACACTAA 57.115 29.630 0.00 0.00 0.00 2.24
1997 2235 3.319122 ACCAAGCAACTTTCAGGAATGTC 59.681 43.478 1.64 0.00 0.00 3.06
2107 2407 6.205270 GCAATGACCCTAGTACTAGTCTAGTC 59.795 46.154 24.84 22.72 40.14 2.59
2117 2417 5.616424 CGATACTACGCAATGACCCTAGTAC 60.616 48.000 0.00 0.00 0.00 2.73
2133 2433 8.709646 ACAGAAAACATTGAAGTTCGATACTAC 58.290 33.333 5.24 0.00 35.54 2.73
2305 2704 3.523564 AGGCCCTTCTAGAGCAATAACAA 59.476 43.478 0.00 0.00 0.00 2.83
2399 2863 2.236766 CATCCTCATGATTGGGCCTTC 58.763 52.381 4.53 2.23 30.57 3.46
2418 2883 2.472695 AGCAGTGAGATAAAACGGCA 57.527 45.000 0.00 0.00 39.56 5.69
2519 2993 3.056536 CCTCAGAGTCATCGGAAGTTTCA 60.057 47.826 0.00 0.00 0.00 2.69
2584 3058 1.748879 CAATGTACCTGCACCCCGG 60.749 63.158 0.00 0.00 0.00 5.73
2588 3062 3.439129 GGTAAGAACAATGTACCTGCACC 59.561 47.826 0.00 1.48 35.40 5.01
2708 3250 4.780815 TCATAACTCATAAGCAAGTGGGG 58.219 43.478 0.00 0.00 0.00 4.96
2790 3362 5.283876 ACCAATAGGGAAATGGGAGAAAA 57.716 39.130 0.00 0.00 41.15 2.29
2965 3830 4.202223 GGTGGAACTTGAGTGAGTAGTTGA 60.202 45.833 0.00 0.00 36.74 3.18
3085 3950 2.092103 TGGGGCAACTACTTCAACTGTT 60.092 45.455 0.00 0.00 0.00 3.16
3146 4011 5.961272 TCACACAATTATCTTGCTCGTCTA 58.039 37.500 0.00 0.00 0.00 2.59
3169 4034 2.227149 GGCAACCGTACGGAAAGATTTT 59.773 45.455 39.52 19.07 38.96 1.82
3216 4081 1.071699 TGGGGACAGACAACTTGCTAC 59.928 52.381 0.00 0.00 35.01 3.58
3306 4196 1.950630 GCTTTGTTGCCAGTTGCCG 60.951 57.895 0.00 0.00 40.16 5.69
3393 4290 2.049802 CTGTTTGCCTGGCTTGCG 60.050 61.111 21.03 0.78 0.00 4.85
3412 4309 2.124983 AGCGCCGTTGAGATGCAT 60.125 55.556 2.29 0.00 0.00 3.96
3464 4361 3.834610 AGTCGATACTTTGGACGTGAAG 58.165 45.455 0.00 0.00 35.87 3.02
3505 4402 2.745884 TTTGGATGCCAGACCGCG 60.746 61.111 0.00 0.00 33.81 6.46
3506 4403 2.409870 CCTTTGGATGCCAGACCGC 61.410 63.158 0.00 0.00 33.81 5.68
3507 4404 2.409870 GCCTTTGGATGCCAGACCG 61.410 63.158 0.00 0.00 33.81 4.79
3508 4405 3.608432 GCCTTTGGATGCCAGACC 58.392 61.111 0.00 0.00 33.81 3.85
3513 4410 3.022710 GGCTTGGCCTTTGGATGCC 62.023 63.158 3.32 2.34 46.69 4.40
3514 4411 2.580815 GGCTTGGCCTTTGGATGC 59.419 61.111 3.32 0.00 46.69 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.