Multiple sequence alignment - TraesCS5B01G514300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G514300 chr5B 100.000 3027 0 0 1 3027 679342774 679345800 0.000000e+00 5590.0
1 TraesCS5B01G514300 chr5B 91.099 1910 113 29 502 2375 545984683 545982795 0.000000e+00 2532.0
2 TraesCS5B01G514300 chr5B 88.932 515 28 8 24 510 545985220 545984707 2.580000e-170 608.0
3 TraesCS5B01G514300 chr5B 88.710 62 7 0 2962 3023 501096414 501096475 3.240000e-10 76.8
4 TraesCS5B01G514300 chr7D 93.519 1898 84 14 502 2375 11604111 11605993 0.000000e+00 2787.0
5 TraesCS5B01G514300 chr7D 91.422 1399 63 18 1020 2375 90393837 90395221 0.000000e+00 1866.0
6 TraesCS5B01G514300 chr7D 92.502 1027 50 11 1357 2382 572476646 572477646 0.000000e+00 1445.0
7 TraesCS5B01G514300 chr7D 91.544 1017 62 7 502 1509 54865786 54866787 0.000000e+00 1380.0
8 TraesCS5B01G514300 chr7D 89.187 1119 90 16 502 1596 129104019 129102908 0.000000e+00 1367.0
9 TraesCS5B01G514300 chr7D 91.684 481 21 4 45 510 129104519 129104043 0.000000e+00 649.0
10 TraesCS5B01G514300 chr7D 92.099 443 18 5 82 510 79619121 79619560 2.580000e-170 608.0
11 TraesCS5B01G514300 chr7D 94.079 304 18 0 2391 2694 620449579 620449276 2.130000e-126 462.0
12 TraesCS5B01G514300 chr6D 93.485 1888 94 13 502 2375 30919934 30921806 0.000000e+00 2778.0
13 TraesCS5B01G514300 chr6D 92.999 1657 72 18 693 2324 372370608 372368971 0.000000e+00 2377.0
14 TraesCS5B01G514300 chr6D 91.987 312 21 1 2386 2693 445655137 445655448 4.630000e-118 435.0
15 TraesCS5B01G514300 chr2D 93.454 1879 90 19 502 2375 563102978 563101128 0.000000e+00 2758.0
16 TraesCS5B01G514300 chr2D 92.955 1902 91 17 502 2375 41368747 41366861 0.000000e+00 2730.0
17 TraesCS5B01G514300 chr2D 95.000 1040 36 5 1343 2375 481030695 481031725 0.000000e+00 1618.0
18 TraesCS5B01G514300 chr2D 91.437 327 23 1 2373 2694 150131371 150131045 7.700000e-121 444.0
19 TraesCS5B01G514300 chr2D 92.459 305 23 0 2389 2693 562804125 562803821 1.290000e-118 436.0
20 TraesCS5B01G514300 chr2D 90.303 330 24 2 2372 2693 159310557 159310886 2.790000e-115 425.0
21 TraesCS5B01G514300 chr4D 93.772 1734 76 12 669 2375 506595020 506596748 0.000000e+00 2575.0
22 TraesCS5B01G514300 chr4D 93.559 1273 66 5 1104 2375 4335211 4333954 0.000000e+00 1882.0
23 TraesCS5B01G514300 chr4B 93.984 1712 86 5 502 2209 626051590 626053288 0.000000e+00 2575.0
24 TraesCS5B01G514300 chr4B 92.025 326 20 1 2370 2695 15263552 15263871 1.280000e-123 453.0
25 TraesCS5B01G514300 chr4B 96.364 55 1 1 2954 3007 393341648 393341702 4.160000e-14 89.8
26 TraesCS5B01G514300 chr4A 90.663 1885 120 29 502 2375 130171008 130169169 0.000000e+00 2455.0
27 TraesCS5B01G514300 chr4A 92.258 1085 63 7 560 1625 731704768 731705850 0.000000e+00 1519.0
28 TraesCS5B01G514300 chr4A 92.030 1079 59 14 502 1571 8970329 8969269 0.000000e+00 1491.0
29 TraesCS5B01G514300 chr4A 83.448 145 10 3 2691 2835 676929076 676929206 4.100000e-24 122.0
30 TraesCS5B01G514300 chr4A 82.787 122 16 5 2875 2994 33655857 33655975 1.480000e-18 104.0
31 TraesCS5B01G514300 chr4A 81.967 122 18 4 2907 3027 517418434 517418316 1.920000e-17 100.0
32 TraesCS5B01G514300 chr4A 90.769 65 6 0 2959 3023 26882691 26882627 1.490000e-13 87.9
33 TraesCS5B01G514300 chr4A 87.692 65 6 2 2960 3023 9618672 9618609 1.160000e-09 75.0
34 TraesCS5B01G514300 chr5A 93.563 1336 75 7 1049 2375 605982528 605981195 0.000000e+00 1980.0
35 TraesCS5B01G514300 chr3B 90.997 1344 79 26 208 1530 308407348 308406026 0.000000e+00 1773.0
36 TraesCS5B01G514300 chr7B 93.328 1169 60 6 1152 2317 713712450 713711297 0.000000e+00 1711.0
37 TraesCS5B01G514300 chr7B 91.096 146 13 0 2690 2835 63518912 63518767 6.620000e-47 198.0
38 TraesCS5B01G514300 chr5D 91.977 1209 59 13 502 1673 39348218 39349425 0.000000e+00 1661.0
39 TraesCS5B01G514300 chr5D 92.301 1143 57 11 502 1625 222124492 222123362 0.000000e+00 1594.0
40 TraesCS5B01G514300 chr5D 92.193 1140 53 15 502 1625 273108121 273109240 0.000000e+00 1580.0
41 TraesCS5B01G514300 chr5D 90.138 507 26 9 18 510 39347698 39348194 3.290000e-179 638.0
42 TraesCS5B01G514300 chr5D 90.345 145 14 0 2691 2835 534252861 534252717 1.110000e-44 191.0
43 TraesCS5B01G514300 chr7A 92.172 1137 59 9 502 1625 487295233 487296352 0.000000e+00 1580.0
44 TraesCS5B01G514300 chr7A 91.917 433 21 2 91 510 487294778 487295209 7.230000e-166 593.0
45 TraesCS5B01G514300 chr7A 91.034 145 13 0 2691 2835 487297346 487297490 2.380000e-46 196.0
46 TraesCS5B01G514300 chr2B 91.913 507 24 3 18 510 18323089 18323592 0.000000e+00 693.0
47 TraesCS5B01G514300 chr1B 91.631 466 23 10 45 510 278634868 278635317 5.510000e-177 630.0
48 TraesCS5B01G514300 chr3D 90.741 486 21 6 45 510 332614451 332614932 7.120000e-176 627.0
49 TraesCS5B01G514300 chr3D 77.273 154 33 2 2875 3027 176584888 176584736 4.160000e-14 89.8
50 TraesCS5B01G514300 chr1D 93.289 298 20 0 2397 2694 10805402 10805105 9.960000e-120 440.0
51 TraesCS5B01G514300 chr1D 93.289 298 20 0 2396 2693 340562852 340563149 9.960000e-120 440.0
52 TraesCS5B01G514300 chr1D 91.746 315 24 2 2380 2694 349468249 349467937 1.290000e-118 436.0
53 TraesCS5B01G514300 chr1D 82.278 79 13 1 2946 3024 470344299 470344376 1.950000e-07 67.6
54 TraesCS5B01G514300 chr1A 91.275 149 13 0 2691 2839 7879766 7879618 1.420000e-48 204.0
55 TraesCS5B01G514300 chr2A 83.471 121 16 4 2875 2993 175470511 175470393 3.190000e-20 110.0
56 TraesCS5B01G514300 chr6B 78.505 107 23 0 2729 2835 681273076 681273182 1.510000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G514300 chr5B 679342774 679345800 3026 False 5590.000000 5590 100.000000 1 3027 1 chr5B.!!$F2 3026
1 TraesCS5B01G514300 chr5B 545982795 545985220 2425 True 1570.000000 2532 90.015500 24 2375 2 chr5B.!!$R1 2351
2 TraesCS5B01G514300 chr7D 11604111 11605993 1882 False 2787.000000 2787 93.519000 502 2375 1 chr7D.!!$F1 1873
3 TraesCS5B01G514300 chr7D 90393837 90395221 1384 False 1866.000000 1866 91.422000 1020 2375 1 chr7D.!!$F4 1355
4 TraesCS5B01G514300 chr7D 572476646 572477646 1000 False 1445.000000 1445 92.502000 1357 2382 1 chr7D.!!$F5 1025
5 TraesCS5B01G514300 chr7D 54865786 54866787 1001 False 1380.000000 1380 91.544000 502 1509 1 chr7D.!!$F2 1007
6 TraesCS5B01G514300 chr7D 129102908 129104519 1611 True 1008.000000 1367 90.435500 45 1596 2 chr7D.!!$R2 1551
7 TraesCS5B01G514300 chr6D 30919934 30921806 1872 False 2778.000000 2778 93.485000 502 2375 1 chr6D.!!$F1 1873
8 TraesCS5B01G514300 chr6D 372368971 372370608 1637 True 2377.000000 2377 92.999000 693 2324 1 chr6D.!!$R1 1631
9 TraesCS5B01G514300 chr2D 563101128 563102978 1850 True 2758.000000 2758 93.454000 502 2375 1 chr2D.!!$R4 1873
10 TraesCS5B01G514300 chr2D 41366861 41368747 1886 True 2730.000000 2730 92.955000 502 2375 1 chr2D.!!$R1 1873
11 TraesCS5B01G514300 chr2D 481030695 481031725 1030 False 1618.000000 1618 95.000000 1343 2375 1 chr2D.!!$F2 1032
12 TraesCS5B01G514300 chr4D 506595020 506596748 1728 False 2575.000000 2575 93.772000 669 2375 1 chr4D.!!$F1 1706
13 TraesCS5B01G514300 chr4D 4333954 4335211 1257 True 1882.000000 1882 93.559000 1104 2375 1 chr4D.!!$R1 1271
14 TraesCS5B01G514300 chr4B 626051590 626053288 1698 False 2575.000000 2575 93.984000 502 2209 1 chr4B.!!$F3 1707
15 TraesCS5B01G514300 chr4A 130169169 130171008 1839 True 2455.000000 2455 90.663000 502 2375 1 chr4A.!!$R4 1873
16 TraesCS5B01G514300 chr4A 731704768 731705850 1082 False 1519.000000 1519 92.258000 560 1625 1 chr4A.!!$F3 1065
17 TraesCS5B01G514300 chr4A 8969269 8970329 1060 True 1491.000000 1491 92.030000 502 1571 1 chr4A.!!$R1 1069
18 TraesCS5B01G514300 chr5A 605981195 605982528 1333 True 1980.000000 1980 93.563000 1049 2375 1 chr5A.!!$R1 1326
19 TraesCS5B01G514300 chr3B 308406026 308407348 1322 True 1773.000000 1773 90.997000 208 1530 1 chr3B.!!$R1 1322
20 TraesCS5B01G514300 chr7B 713711297 713712450 1153 True 1711.000000 1711 93.328000 1152 2317 1 chr7B.!!$R2 1165
21 TraesCS5B01G514300 chr5D 222123362 222124492 1130 True 1594.000000 1594 92.301000 502 1625 1 chr5D.!!$R1 1123
22 TraesCS5B01G514300 chr5D 273108121 273109240 1119 False 1580.000000 1580 92.193000 502 1625 1 chr5D.!!$F1 1123
23 TraesCS5B01G514300 chr5D 39347698 39349425 1727 False 1149.500000 1661 91.057500 18 1673 2 chr5D.!!$F2 1655
24 TraesCS5B01G514300 chr7A 487294778 487297490 2712 False 789.666667 1580 91.707667 91 2835 3 chr7A.!!$F1 2744
25 TraesCS5B01G514300 chr2B 18323089 18323592 503 False 693.000000 693 91.913000 18 510 1 chr2B.!!$F1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 275 0.600557 AGTGAACTGACCTGAGCGAG 59.399 55.0 0.0 0.0 0.0 5.03 F
1030 1175 0.104725 GGGAGGAGATGGATGGGTCT 60.105 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1408 0.103937 CCTCCTCGCTCAACCTCATC 59.896 60.0 0.0 0.0 0.00 2.92 R
2871 4112 0.030235 TATCCATTCCGACGACAGCG 59.970 55.0 0.0 0.0 44.79 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.082026 GCAGCTGGTCAATTTTGTATCCTT 60.082 41.667 17.12 0.00 0.00 3.36
61 62 3.440267 GCATGTTTCGCTTGCACG 58.560 55.556 0.00 0.00 44.67 5.34
63 64 1.442520 CATGTTTCGCTTGCACGGG 60.443 57.895 0.28 0.28 0.00 5.28
69 70 2.048222 CGCTTGCACGGGAGAGAA 60.048 61.111 0.42 0.00 0.00 2.87
118 133 3.881089 GGTTAGGTGAGAGTAGAGAGAGC 59.119 52.174 0.00 0.00 0.00 4.09
173 201 1.639722 TGGTCGAATCCAGGAGACAA 58.360 50.000 9.08 0.00 35.49 3.18
246 275 0.600557 AGTGAACTGACCTGAGCGAG 59.399 55.000 0.00 0.00 0.00 5.03
393 429 3.034635 TCCTGCCTTGGCTTTTGTTTAA 58.965 40.909 13.18 0.00 0.00 1.52
468 506 6.366332 TCTCTCGATTGAACTACTTTTGCTTC 59.634 38.462 0.00 0.00 0.00 3.86
495 533 4.300803 CTTGCGCAATAATGGCAATATGT 58.699 39.130 25.26 0.00 39.95 2.29
762 903 1.080298 GCAACTGGCATGCTGTTCC 60.080 57.895 18.92 9.72 43.97 3.62
988 1133 2.933573 CCTACACTATGGAGGTCGAGT 58.066 52.381 0.00 0.00 43.72 4.18
1030 1175 0.104725 GGGAGGAGATGGATGGGTCT 60.105 60.000 0.00 0.00 0.00 3.85
1039 1184 3.524789 AGATGGATGGGTCTGTTTCATCA 59.475 43.478 0.00 0.00 39.07 3.07
1056 1201 3.133901 TCATCACCCACATGCGTATTACT 59.866 43.478 0.00 0.00 0.00 2.24
1087 1232 5.380043 AGTTGATCAGCTTCTCCTTCAAAA 58.620 37.500 6.20 0.00 0.00 2.44
1102 1247 4.644685 CCTTCAAAACAGAAAGACCCAAGA 59.355 41.667 0.00 0.00 0.00 3.02
1139 1302 4.216902 TGTCAACAAAGCAGAAGATGATGG 59.783 41.667 0.00 0.00 0.00 3.51
1169 1386 1.066143 GGATGATGACGACCCACTTGT 60.066 52.381 0.00 0.00 0.00 3.16
1179 1396 1.963515 GACCCACTTGTTGAAGCCATT 59.036 47.619 0.00 0.00 31.68 3.16
1191 1408 3.084039 TGAAGCCATTGTAGCTCAAAGG 58.916 45.455 12.81 12.81 44.73 3.11
1220 1437 2.575993 CGAGGAGGAGGTGTGCAG 59.424 66.667 0.00 0.00 0.00 4.41
1260 1477 0.388520 CACGTGCTGACTTCATCGGA 60.389 55.000 0.82 0.00 35.44 4.55
1264 1481 0.969149 TGCTGACTTCATCGGAGTGT 59.031 50.000 0.00 0.00 35.44 3.55
1378 1595 8.743085 TGTTATACTTAGTGTAGAGTCCGATT 57.257 34.615 0.00 0.00 34.24 3.34
1717 2634 9.372369 AGAAATGTAGTACTGTCTTTTGATAGC 57.628 33.333 5.39 0.00 40.74 2.97
1781 2699 9.520515 TTCTTATTCAGAAATTACCAAAGAGCT 57.479 29.630 0.00 0.00 38.68 4.09
1904 3091 1.425267 CGGTCGCACACACTTCAACA 61.425 55.000 0.00 0.00 0.00 3.33
2218 3454 9.855021 GGTTATGTGAACTTAGTTTATTTGCAT 57.145 29.630 0.00 0.00 0.00 3.96
2367 3608 4.827835 TGGTAGAGAAAGATGCGCTACTAT 59.172 41.667 9.73 0.00 38.29 2.12
2380 3621 8.625651 AGATGCGCTACTATTAAGTATATCTGG 58.374 37.037 9.73 0.00 37.57 3.86
2381 3622 6.561614 TGCGCTACTATTAAGTATATCTGGC 58.438 40.000 9.73 0.00 37.57 4.85
2382 3623 5.978322 GCGCTACTATTAAGTATATCTGGCC 59.022 44.000 0.00 0.00 37.57 5.36
2383 3624 6.405508 GCGCTACTATTAAGTATATCTGGCCA 60.406 42.308 4.71 4.71 37.57 5.36
2384 3625 7.684670 GCGCTACTATTAAGTATATCTGGCCAT 60.685 40.741 5.51 0.00 37.57 4.40
2385 3626 7.649705 CGCTACTATTAAGTATATCTGGCCATG 59.350 40.741 5.51 0.00 37.57 3.66
2386 3627 7.928706 GCTACTATTAAGTATATCTGGCCATGG 59.071 40.741 5.51 7.63 37.57 3.66
2387 3628 9.201989 CTACTATTAAGTATATCTGGCCATGGA 57.798 37.037 18.40 0.00 37.57 3.41
2388 3629 7.852263 ACTATTAAGTATATCTGGCCATGGAC 58.148 38.462 18.40 15.32 32.84 4.02
2389 3630 5.499004 TTAAGTATATCTGGCCATGGACC 57.501 43.478 17.19 16.42 0.00 4.46
2390 3631 1.902508 AGTATATCTGGCCATGGACCG 59.097 52.381 17.19 9.44 0.00 4.79
2391 3632 1.066143 GTATATCTGGCCATGGACCGG 60.066 57.143 17.19 20.04 34.63 5.28
2392 3633 1.492133 ATATCTGGCCATGGACCGGG 61.492 60.000 25.07 17.28 34.06 5.73
2398 3639 4.820744 CCATGGACCGGGCTTGGG 62.821 72.222 18.98 9.29 0.00 4.12
2399 3640 4.047125 CATGGACCGGGCTTGGGT 62.047 66.667 7.57 0.00 41.48 4.51
2408 3649 4.986708 GGCTTGGGTCGGGCCAAA 62.987 66.667 4.39 0.00 44.69 3.28
2409 3650 2.915137 GCTTGGGTCGGGCCAAAA 60.915 61.111 4.39 0.00 39.65 2.44
2410 3651 2.503382 GCTTGGGTCGGGCCAAAAA 61.503 57.895 4.39 0.00 39.65 1.94
2431 3672 4.473643 CCCACGGCAGAAAACTGA 57.526 55.556 0.00 0.00 0.00 3.41
2432 3673 2.247790 CCCACGGCAGAAAACTGAG 58.752 57.895 0.00 0.00 0.00 3.35
2433 3674 1.237285 CCCACGGCAGAAAACTGAGG 61.237 60.000 0.00 0.00 0.00 3.86
2434 3675 1.576421 CACGGCAGAAAACTGAGGC 59.424 57.895 0.00 0.00 0.00 4.70
2435 3676 1.600916 ACGGCAGAAAACTGAGGCC 60.601 57.895 0.00 0.00 41.20 5.19
2436 3677 2.335712 CGGCAGAAAACTGAGGCCC 61.336 63.158 0.00 0.00 41.58 5.80
2437 3678 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
2450 3691 3.096495 GCCCAGGCCCTACCATGA 61.096 66.667 0.00 0.00 43.14 3.07
2451 3692 3.125376 GCCCAGGCCCTACCATGAG 62.125 68.421 0.00 0.00 43.14 2.90
2452 3693 2.455565 CCCAGGCCCTACCATGAGG 61.456 68.421 0.00 0.00 43.14 3.86
2453 3694 2.512896 CAGGCCCTACCATGAGGC 59.487 66.667 0.00 0.43 46.37 4.70
2456 3697 4.313523 GCCCTACCATGAGGCCTA 57.686 61.111 4.42 0.00 41.00 3.93
2457 3698 1.755384 GCCCTACCATGAGGCCTAC 59.245 63.158 4.42 0.00 41.00 3.18
2458 3699 0.764752 GCCCTACCATGAGGCCTACT 60.765 60.000 4.42 0.00 41.00 2.57
2459 3700 1.807814 CCCTACCATGAGGCCTACTT 58.192 55.000 4.42 0.00 39.06 2.24
2460 3701 2.127708 CCCTACCATGAGGCCTACTTT 58.872 52.381 4.42 0.00 39.06 2.66
2461 3702 2.509964 CCCTACCATGAGGCCTACTTTT 59.490 50.000 4.42 0.00 39.06 2.27
2462 3703 3.433740 CCCTACCATGAGGCCTACTTTTC 60.434 52.174 4.42 0.00 39.06 2.29
2463 3704 3.199946 CCTACCATGAGGCCTACTTTTCA 59.800 47.826 4.42 0.00 39.06 2.69
2464 3705 3.806949 ACCATGAGGCCTACTTTTCAA 57.193 42.857 4.42 0.00 39.06 2.69
2465 3706 3.690460 ACCATGAGGCCTACTTTTCAAG 58.310 45.455 4.42 0.00 39.06 3.02
2466 3707 2.424956 CCATGAGGCCTACTTTTCAAGC 59.575 50.000 4.42 0.00 0.00 4.01
2467 3708 3.350833 CATGAGGCCTACTTTTCAAGCT 58.649 45.455 4.42 0.00 0.00 3.74
2468 3709 3.059352 TGAGGCCTACTTTTCAAGCTC 57.941 47.619 4.42 0.00 0.00 4.09
2469 3710 2.371841 TGAGGCCTACTTTTCAAGCTCA 59.628 45.455 4.42 0.00 0.00 4.26
2470 3711 3.181445 TGAGGCCTACTTTTCAAGCTCAA 60.181 43.478 4.42 0.00 0.00 3.02
2471 3712 3.416156 AGGCCTACTTTTCAAGCTCAAG 58.584 45.455 1.29 0.00 0.00 3.02
2472 3713 2.095008 GGCCTACTTTTCAAGCTCAAGC 60.095 50.000 0.00 0.00 42.49 4.01
2473 3714 2.095008 GCCTACTTTTCAAGCTCAAGCC 60.095 50.000 0.00 0.00 43.38 4.35
2474 3715 3.416156 CCTACTTTTCAAGCTCAAGCCT 58.584 45.455 0.00 0.00 43.38 4.58
2475 3716 3.190118 CCTACTTTTCAAGCTCAAGCCTG 59.810 47.826 0.00 0.00 43.38 4.85
2476 3717 1.959282 ACTTTTCAAGCTCAAGCCTGG 59.041 47.619 0.00 0.00 43.38 4.45
2477 3718 0.675633 TTTTCAAGCTCAAGCCTGGC 59.324 50.000 11.65 11.65 43.38 4.85
2478 3719 1.181098 TTTCAAGCTCAAGCCTGGCC 61.181 55.000 16.57 0.00 43.38 5.36
2479 3720 3.066814 CAAGCTCAAGCCTGGCCC 61.067 66.667 16.57 0.00 43.38 5.80
2480 3721 3.583380 AAGCTCAAGCCTGGCCCA 61.583 61.111 16.57 0.00 43.38 5.36
2481 3722 2.927537 AAGCTCAAGCCTGGCCCAT 61.928 57.895 16.57 0.00 43.38 4.00
2482 3723 2.832201 GCTCAAGCCTGGCCCATC 60.832 66.667 16.57 0.00 34.31 3.51
2483 3724 3.004951 CTCAAGCCTGGCCCATCT 58.995 61.111 16.57 0.00 0.00 2.90
2484 3725 1.453379 CTCAAGCCTGGCCCATCTG 60.453 63.158 16.57 5.56 0.00 2.90
2485 3726 2.441532 CAAGCCTGGCCCATCTGG 60.442 66.667 16.57 0.00 37.09 3.86
2486 3727 2.943265 AAGCCTGGCCCATCTGGT 60.943 61.111 16.57 0.00 36.04 4.00
2487 3728 2.988839 AAGCCTGGCCCATCTGGTC 61.989 63.158 16.57 0.00 40.11 4.02
2493 3734 1.893062 GGCCCATCTGGTCAAAAGC 59.107 57.895 0.00 0.00 39.18 3.51
2494 3735 1.607801 GGCCCATCTGGTCAAAAGCC 61.608 60.000 0.00 0.00 39.18 4.35
2495 3736 1.607801 GCCCATCTGGTCAAAAGCCC 61.608 60.000 0.00 0.00 36.04 5.19
2496 3737 0.040204 CCCATCTGGTCAAAAGCCCT 59.960 55.000 0.00 0.00 0.00 5.19
2497 3738 1.550869 CCCATCTGGTCAAAAGCCCTT 60.551 52.381 0.00 0.00 0.00 3.95
2498 3739 2.291540 CCCATCTGGTCAAAAGCCCTTA 60.292 50.000 0.00 0.00 0.00 2.69
2499 3740 3.019564 CCATCTGGTCAAAAGCCCTTAG 58.980 50.000 0.00 0.00 0.00 2.18
2500 3741 2.879103 TCTGGTCAAAAGCCCTTAGG 57.121 50.000 0.00 0.00 0.00 2.69
2531 3772 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
2532 3773 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
2533 3774 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
2534 3775 0.323087 GCCGGGCCTCTTCCTTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
2535 3776 1.685180 GCCGGGCCTCTTCCTTAAAAT 60.685 52.381 8.12 0.00 0.00 1.82
2536 3777 2.024414 CCGGGCCTCTTCCTTAAAATG 58.976 52.381 0.84 0.00 0.00 2.32
2537 3778 1.405463 CGGGCCTCTTCCTTAAAATGC 59.595 52.381 0.84 0.00 0.00 3.56
2538 3779 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
2539 3780 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
2540 3781 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
2541 3782 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
2542 3783 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
2543 3784 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
2544 3785 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
2545 3786 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
2546 3787 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
2547 3788 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
2548 3789 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
2549 3790 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
2550 3791 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
2551 3792 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
2552 3793 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
2553 3794 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
2554 3795 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
2555 3796 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
2556 3797 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
2557 3798 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
2558 3799 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
2563 3804 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
2564 3805 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
2576 3817 4.729918 GTCCAGGCCCTGCTGGTG 62.730 72.222 4.81 0.37 41.28 4.17
2583 3824 3.970410 CCCTGCTGGTGGGCTCAA 61.970 66.667 9.00 0.00 37.99 3.02
2584 3825 2.115910 CCTGCTGGTGGGCTCAAA 59.884 61.111 0.51 0.00 0.00 2.69
2585 3826 1.531365 CCTGCTGGTGGGCTCAAAA 60.531 57.895 0.51 0.00 0.00 2.44
2586 3827 1.662044 CTGCTGGTGGGCTCAAAAC 59.338 57.895 0.00 0.00 0.00 2.43
2587 3828 0.825010 CTGCTGGTGGGCTCAAAACT 60.825 55.000 0.00 0.00 0.00 2.66
2588 3829 0.396974 TGCTGGTGGGCTCAAAACTT 60.397 50.000 0.00 0.00 0.00 2.66
2589 3830 1.133637 TGCTGGTGGGCTCAAAACTTA 60.134 47.619 0.00 0.00 0.00 2.24
2590 3831 1.541588 GCTGGTGGGCTCAAAACTTAG 59.458 52.381 0.00 0.00 0.00 2.18
2591 3832 2.162681 CTGGTGGGCTCAAAACTTAGG 58.837 52.381 0.00 0.00 0.00 2.69
2592 3833 0.888619 GGTGGGCTCAAAACTTAGGC 59.111 55.000 0.00 0.00 37.55 3.93
2595 3836 3.356814 GGCTCAAAACTTAGGCCCA 57.643 52.632 0.00 0.00 37.12 5.36
2596 3837 1.627864 GGCTCAAAACTTAGGCCCAA 58.372 50.000 0.00 0.00 37.12 4.12
2597 3838 1.546029 GGCTCAAAACTTAGGCCCAAG 59.454 52.381 9.61 9.61 37.12 3.61
2598 3839 1.067565 GCTCAAAACTTAGGCCCAAGC 60.068 52.381 11.18 0.00 38.76 4.01
2620 3861 2.825836 CCCACGAGCAAGCCCATC 60.826 66.667 0.00 0.00 0.00 3.51
2621 3862 3.197790 CCACGAGCAAGCCCATCG 61.198 66.667 0.00 1.37 42.04 3.84
2622 3863 3.197790 CACGAGCAAGCCCATCGG 61.198 66.667 7.04 0.00 40.67 4.18
2642 3883 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
2643 3884 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
2649 3890 3.800826 CCTGGATTTTAGGGTCGGG 57.199 57.895 0.00 0.00 0.00 5.14
2650 3891 0.465642 CCTGGATTTTAGGGTCGGGC 60.466 60.000 0.00 0.00 0.00 6.13
2651 3892 0.465642 CTGGATTTTAGGGTCGGGCC 60.466 60.000 0.00 0.00 0.00 5.80
2652 3893 0.917333 TGGATTTTAGGGTCGGGCCT 60.917 55.000 0.84 0.00 37.43 5.19
2653 3894 0.465642 GGATTTTAGGGTCGGGCCTG 60.466 60.000 4.71 4.71 37.43 4.85
2654 3895 0.465642 GATTTTAGGGTCGGGCCTGG 60.466 60.000 12.87 0.00 37.43 4.45
2655 3896 1.933307 ATTTTAGGGTCGGGCCTGGG 61.933 60.000 12.87 0.00 37.43 4.45
2656 3897 3.876255 TTTAGGGTCGGGCCTGGGT 62.876 63.158 12.87 0.00 37.43 4.51
2694 3935 1.786937 CTGAGATGGCCAGGACTACT 58.213 55.000 13.05 3.29 0.00 2.57
2695 3936 2.950781 CTGAGATGGCCAGGACTACTA 58.049 52.381 13.05 0.74 0.00 1.82
2696 3937 2.625790 CTGAGATGGCCAGGACTACTAC 59.374 54.545 13.05 0.00 0.00 2.73
2697 3938 2.245028 TGAGATGGCCAGGACTACTACT 59.755 50.000 13.05 0.00 0.00 2.57
2698 3939 3.462205 TGAGATGGCCAGGACTACTACTA 59.538 47.826 13.05 0.00 0.00 1.82
2699 3940 4.079385 TGAGATGGCCAGGACTACTACTAA 60.079 45.833 13.05 0.00 0.00 2.24
2700 3941 4.475345 AGATGGCCAGGACTACTACTAAG 58.525 47.826 13.05 0.00 0.00 2.18
2701 3942 3.752359 TGGCCAGGACTACTACTAAGT 57.248 47.619 0.00 0.00 39.91 2.24
2702 3943 4.868172 TGGCCAGGACTACTACTAAGTA 57.132 45.455 0.00 0.00 37.15 2.24
2703 3944 5.399052 TGGCCAGGACTACTACTAAGTAT 57.601 43.478 0.00 0.00 37.57 2.12
2714 3955 8.385898 ACTACTACTAAGTATCTTAGCTGCAG 57.614 38.462 10.11 10.11 37.57 4.41
2715 3956 7.994334 ACTACTACTAAGTATCTTAGCTGCAGT 59.006 37.037 16.64 4.79 37.57 4.40
2717 3958 6.829298 ACTACTAAGTATCTTAGCTGCAGTGA 59.171 38.462 16.64 9.22 32.84 3.41
2729 3970 5.113502 AGCTGCAGTGATTGTTTAGAAAC 57.886 39.130 16.64 0.00 39.33 2.78
2762 4003 4.482952 AAGTAATAGTTGTAGCGCCCTT 57.517 40.909 2.29 0.00 0.00 3.95
2777 4018 2.183300 CTTGCAGTAGCGCGGGTA 59.817 61.111 8.83 0.00 46.23 3.69
2835 4076 9.344309 CACTAGTAAAGTTTTCTCTAGTAGTGC 57.656 37.037 18.46 0.00 43.90 4.40
2836 4077 8.235905 ACTAGTAAAGTTTTCTCTAGTAGTGCG 58.764 37.037 17.90 0.00 37.87 5.34
2837 4078 7.211966 AGTAAAGTTTTCTCTAGTAGTGCGA 57.788 36.000 0.00 0.00 0.00 5.10
2838 4079 7.083230 AGTAAAGTTTTCTCTAGTAGTGCGAC 58.917 38.462 0.00 0.00 0.00 5.19
2839 4080 5.708877 AAGTTTTCTCTAGTAGTGCGACT 57.291 39.130 0.00 0.00 0.00 4.18
2840 4081 6.814506 AAGTTTTCTCTAGTAGTGCGACTA 57.185 37.500 0.00 0.00 0.00 2.59
2851 4092 3.706287 TGCGACTACCGTACATGTG 57.294 52.632 9.11 0.00 41.15 3.21
2852 4093 1.166989 TGCGACTACCGTACATGTGA 58.833 50.000 9.11 0.00 41.15 3.58
2853 4094 1.540707 TGCGACTACCGTACATGTGAA 59.459 47.619 9.11 0.00 41.15 3.18
2854 4095 2.030096 TGCGACTACCGTACATGTGAAA 60.030 45.455 9.11 0.00 41.15 2.69
2855 4096 2.597305 GCGACTACCGTACATGTGAAAG 59.403 50.000 9.11 1.51 41.15 2.62
2856 4097 3.671433 GCGACTACCGTACATGTGAAAGA 60.671 47.826 9.11 0.00 41.15 2.52
2857 4098 4.669318 CGACTACCGTACATGTGAAAGAT 58.331 43.478 9.11 0.00 0.00 2.40
2858 4099 5.731406 GCGACTACCGTACATGTGAAAGATA 60.731 44.000 9.11 0.00 41.15 1.98
2859 4100 6.260377 CGACTACCGTACATGTGAAAGATAA 58.740 40.000 9.11 0.00 0.00 1.75
2860 4101 6.916387 CGACTACCGTACATGTGAAAGATAAT 59.084 38.462 9.11 0.00 0.00 1.28
2861 4102 7.096599 CGACTACCGTACATGTGAAAGATAATG 60.097 40.741 9.11 0.00 0.00 1.90
2862 4103 6.984474 ACTACCGTACATGTGAAAGATAATGG 59.016 38.462 9.11 3.06 0.00 3.16
2863 4104 5.984725 ACCGTACATGTGAAAGATAATGGA 58.015 37.500 9.11 0.00 0.00 3.41
2864 4105 6.049149 ACCGTACATGTGAAAGATAATGGAG 58.951 40.000 9.11 0.00 0.00 3.86
2865 4106 6.127168 ACCGTACATGTGAAAGATAATGGAGA 60.127 38.462 9.11 0.00 0.00 3.71
2866 4107 6.931281 CCGTACATGTGAAAGATAATGGAGAT 59.069 38.462 9.11 0.00 0.00 2.75
2867 4108 7.116948 CCGTACATGTGAAAGATAATGGAGATC 59.883 40.741 9.11 0.00 0.00 2.75
2868 4109 7.116948 CGTACATGTGAAAGATAATGGAGATCC 59.883 40.741 9.11 0.00 0.00 3.36
2869 4110 5.994054 ACATGTGAAAGATAATGGAGATCCG 59.006 40.000 0.00 0.00 39.43 4.18
2870 4111 4.380531 TGTGAAAGATAATGGAGATCCGC 58.619 43.478 0.00 0.00 39.43 5.54
2871 4112 3.748568 GTGAAAGATAATGGAGATCCGCC 59.251 47.826 0.00 0.00 39.43 6.13
2872 4113 2.751166 AAGATAATGGAGATCCGCCG 57.249 50.000 0.00 0.00 39.43 6.46
2873 4114 0.247736 AGATAATGGAGATCCGCCGC 59.752 55.000 0.00 0.00 39.43 6.53
2874 4115 0.247736 GATAATGGAGATCCGCCGCT 59.752 55.000 0.00 0.00 39.43 5.52
2875 4116 0.036952 ATAATGGAGATCCGCCGCTG 60.037 55.000 0.00 0.00 39.43 5.18
2876 4117 1.399744 TAATGGAGATCCGCCGCTGT 61.400 55.000 0.00 0.00 39.43 4.40
2877 4118 2.650813 AATGGAGATCCGCCGCTGTC 62.651 60.000 0.00 0.00 39.43 3.51
2878 4119 4.933064 GGAGATCCGCCGCTGTCG 62.933 72.222 0.00 0.00 0.00 4.35
2879 4120 4.194720 GAGATCCGCCGCTGTCGT 62.195 66.667 0.00 0.00 0.00 4.34
2880 4121 4.194720 AGATCCGCCGCTGTCGTC 62.195 66.667 0.00 0.00 0.00 4.20
2888 4129 2.180769 CGCTGTCGTCGGAATGGA 59.819 61.111 0.00 0.00 0.00 3.41
2889 4130 1.226974 CGCTGTCGTCGGAATGGAT 60.227 57.895 0.00 0.00 0.00 3.41
2890 4131 0.030235 CGCTGTCGTCGGAATGGATA 59.970 55.000 0.00 0.00 0.00 2.59
2891 4132 1.335964 CGCTGTCGTCGGAATGGATAT 60.336 52.381 0.00 0.00 0.00 1.63
2892 4133 2.329379 GCTGTCGTCGGAATGGATATC 58.671 52.381 0.00 0.00 0.00 1.63
2893 4134 2.927014 GCTGTCGTCGGAATGGATATCC 60.927 54.545 15.39 15.39 0.00 2.59
2900 4141 1.156736 GGAATGGATATCCGCCAACG 58.843 55.000 17.04 0.00 39.21 4.10
2901 4142 0.517316 GAATGGATATCCGCCAACGC 59.483 55.000 17.04 0.00 39.21 4.84
2902 4143 0.889186 AATGGATATCCGCCAACGCC 60.889 55.000 17.04 0.00 39.21 5.68
2903 4144 2.050836 ATGGATATCCGCCAACGCCA 62.051 55.000 17.04 0.00 39.21 5.69
2904 4145 1.961277 GGATATCCGCCAACGCCAG 60.961 63.158 5.86 0.00 38.22 4.85
2905 4146 2.591715 ATATCCGCCAACGCCAGC 60.592 61.111 0.00 0.00 38.22 4.85
2906 4147 4.849310 TATCCGCCAACGCCAGCC 62.849 66.667 0.00 0.00 38.22 4.85
2916 4157 3.510846 CGCCAGCCGTAGACTAGT 58.489 61.111 0.00 0.00 0.00 2.57
2917 4158 1.807886 CGCCAGCCGTAGACTAGTT 59.192 57.895 0.00 0.00 0.00 2.24
2918 4159 0.172803 CGCCAGCCGTAGACTAGTTT 59.827 55.000 0.00 0.00 0.00 2.66
2919 4160 1.403780 CGCCAGCCGTAGACTAGTTTT 60.404 52.381 0.00 0.00 0.00 2.43
2920 4161 2.159338 CGCCAGCCGTAGACTAGTTTTA 60.159 50.000 0.00 0.00 0.00 1.52
2921 4162 3.490419 CGCCAGCCGTAGACTAGTTTTAT 60.490 47.826 0.00 0.00 0.00 1.40
2922 4163 4.049869 GCCAGCCGTAGACTAGTTTTATC 58.950 47.826 0.00 0.00 0.00 1.75
2923 4164 4.202131 GCCAGCCGTAGACTAGTTTTATCT 60.202 45.833 0.00 0.00 0.00 1.98
2924 4165 5.681695 GCCAGCCGTAGACTAGTTTTATCTT 60.682 44.000 0.00 0.00 0.00 2.40
2925 4166 6.460676 GCCAGCCGTAGACTAGTTTTATCTTA 60.461 42.308 0.00 0.00 0.00 2.10
2926 4167 7.140048 CCAGCCGTAGACTAGTTTTATCTTAG 58.860 42.308 0.00 0.00 0.00 2.18
2927 4168 7.201803 CCAGCCGTAGACTAGTTTTATCTTAGT 60.202 40.741 0.00 0.00 0.00 2.24
2928 4169 7.856894 CAGCCGTAGACTAGTTTTATCTTAGTC 59.143 40.741 0.00 3.35 37.88 2.59
2929 4170 7.774625 AGCCGTAGACTAGTTTTATCTTAGTCT 59.225 37.037 15.28 15.28 46.24 3.24
2930 4171 7.856894 GCCGTAGACTAGTTTTATCTTAGTCTG 59.143 40.741 18.64 7.59 44.78 3.51
2931 4172 7.856894 CCGTAGACTAGTTTTATCTTAGTCTGC 59.143 40.741 18.64 16.67 44.78 4.26
2932 4173 8.614346 CGTAGACTAGTTTTATCTTAGTCTGCT 58.386 37.037 18.64 1.63 44.78 4.24
2951 4192 9.360901 AGTCTGCTATCATTTCTAGTATGAAGA 57.639 33.333 12.18 8.82 35.77 2.87
2952 4193 9.405587 GTCTGCTATCATTTCTAGTATGAAGAC 57.594 37.037 15.84 15.84 35.77 3.01
2953 4194 9.360901 TCTGCTATCATTTCTAGTATGAAGACT 57.639 33.333 12.18 2.36 35.77 3.24
2954 4195 9.409312 CTGCTATCATTTCTAGTATGAAGACTG 57.591 37.037 12.18 6.84 35.77 3.51
2955 4196 8.918116 TGCTATCATTTCTAGTATGAAGACTGT 58.082 33.333 12.18 0.00 35.77 3.55
2956 4197 9.757227 GCTATCATTTCTAGTATGAAGACTGTT 57.243 33.333 12.18 1.06 35.77 3.16
2960 4201 9.996554 TCATTTCTAGTATGAAGACTGTTGAAA 57.003 29.630 7.53 0.00 33.42 2.69
2964 4205 9.778741 TTCTAGTATGAAGACTGTTGAAAATGT 57.221 29.630 0.00 0.00 0.00 2.71
2996 4237 8.627487 TTTTGTCATGTTTATATGAAATCCGC 57.373 30.769 0.00 0.00 38.69 5.54
2997 4238 6.312399 TGTCATGTTTATATGAAATCCGCC 57.688 37.500 0.00 0.00 38.69 6.13
2998 4239 5.049749 TGTCATGTTTATATGAAATCCGCCG 60.050 40.000 0.00 0.00 38.69 6.46
2999 4240 5.049680 GTCATGTTTATATGAAATCCGCCGT 60.050 40.000 0.00 0.00 38.69 5.68
3000 4241 4.804608 TGTTTATATGAAATCCGCCGTG 57.195 40.909 0.00 0.00 0.00 4.94
3001 4242 4.193090 TGTTTATATGAAATCCGCCGTGT 58.807 39.130 0.00 0.00 0.00 4.49
3002 4243 4.636648 TGTTTATATGAAATCCGCCGTGTT 59.363 37.500 0.00 0.00 0.00 3.32
3003 4244 5.124138 TGTTTATATGAAATCCGCCGTGTTT 59.876 36.000 0.00 0.00 0.00 2.83
3004 4245 3.691049 ATATGAAATCCGCCGTGTTTG 57.309 42.857 0.00 0.00 0.00 2.93
3005 4246 0.109319 ATGAAATCCGCCGTGTTTGC 60.109 50.000 0.00 0.00 0.00 3.68
3006 4247 1.284408 GAAATCCGCCGTGTTTGCA 59.716 52.632 0.00 0.00 0.00 4.08
3007 4248 0.109319 GAAATCCGCCGTGTTTGCAT 60.109 50.000 0.00 0.00 0.00 3.96
3008 4249 1.131504 GAAATCCGCCGTGTTTGCATA 59.868 47.619 0.00 0.00 0.00 3.14
3009 4250 1.169577 AATCCGCCGTGTTTGCATAA 58.830 45.000 0.00 0.00 0.00 1.90
3010 4251 1.169577 ATCCGCCGTGTTTGCATAAA 58.830 45.000 0.00 0.00 0.00 1.40
3011 4252 1.169577 TCCGCCGTGTTTGCATAAAT 58.830 45.000 0.00 0.00 0.00 1.40
3012 4253 1.542030 TCCGCCGTGTTTGCATAAATT 59.458 42.857 0.00 0.00 0.00 1.82
3013 4254 2.029828 TCCGCCGTGTTTGCATAAATTT 60.030 40.909 0.00 0.00 0.00 1.82
3014 4255 2.344142 CCGCCGTGTTTGCATAAATTTC 59.656 45.455 0.00 0.00 0.00 2.17
3015 4256 2.026272 CGCCGTGTTTGCATAAATTTCG 59.974 45.455 0.00 0.00 0.00 3.46
3016 4257 2.983803 GCCGTGTTTGCATAAATTTCGT 59.016 40.909 0.00 0.00 0.00 3.85
3017 4258 3.427193 GCCGTGTTTGCATAAATTTCGTT 59.573 39.130 0.00 0.00 0.00 3.85
3018 4259 4.432373 GCCGTGTTTGCATAAATTTCGTTC 60.432 41.667 0.00 0.00 0.00 3.95
3019 4260 4.201353 CCGTGTTTGCATAAATTTCGTTCG 60.201 41.667 0.00 0.00 0.00 3.95
3020 4261 4.201353 CGTGTTTGCATAAATTTCGTTCGG 60.201 41.667 0.00 0.00 0.00 4.30
3021 4262 4.677832 GTGTTTGCATAAATTTCGTTCGGT 59.322 37.500 0.00 0.00 0.00 4.69
3022 4263 5.174216 GTGTTTGCATAAATTTCGTTCGGTT 59.826 36.000 0.00 0.00 0.00 4.44
3023 4264 6.360148 GTGTTTGCATAAATTTCGTTCGGTTA 59.640 34.615 0.00 0.00 0.00 2.85
3024 4265 6.579292 TGTTTGCATAAATTTCGTTCGGTTAG 59.421 34.615 0.00 0.00 0.00 2.34
3025 4266 5.866335 TGCATAAATTTCGTTCGGTTAGT 57.134 34.783 0.00 0.00 0.00 2.24
3026 4267 6.243811 TGCATAAATTTCGTTCGGTTAGTT 57.756 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.045926 GCAGGAGCCGTCCAACAT 60.046 61.111 0.00 0.00 46.80 2.71
1 2 3.535629 CTGCAGGAGCCGTCCAACA 62.536 63.158 5.57 0.00 46.80 3.33
2 3 2.743928 CTGCAGGAGCCGTCCAAC 60.744 66.667 5.57 0.00 46.80 3.77
3 4 4.704833 GCTGCAGGAGCCGTCCAA 62.705 66.667 17.12 0.00 46.80 3.53
11 12 1.542492 AAATTGACCAGCTGCAGGAG 58.458 50.000 18.62 0.00 0.00 3.69
12 13 1.614903 CAAAATTGACCAGCTGCAGGA 59.385 47.619 18.62 0.00 0.00 3.86
13 14 1.342174 ACAAAATTGACCAGCTGCAGG 59.658 47.619 17.12 9.78 0.00 4.85
14 15 2.806608 ACAAAATTGACCAGCTGCAG 57.193 45.000 10.11 10.11 0.00 4.41
15 16 3.193267 GGATACAAAATTGACCAGCTGCA 59.807 43.478 8.66 0.00 0.00 4.41
16 17 3.445096 AGGATACAAAATTGACCAGCTGC 59.555 43.478 8.66 0.00 41.41 5.25
39 40 0.040157 GCAAGCGAAACATGCACTCA 60.040 50.000 0.00 0.00 39.81 3.41
61 62 6.436218 ACTCTCTCTACTTTTCTTTCTCTCCC 59.564 42.308 0.00 0.00 0.00 4.30
63 64 9.444600 TCTACTCTCTCTACTTTTCTTTCTCTC 57.555 37.037 0.00 0.00 0.00 3.20
69 70 8.047310 CCTCTCTCTACTCTCTCTACTTTTCTT 58.953 40.741 0.00 0.00 0.00 2.52
118 133 4.532314 AACTTAGTTCCTCACCTAACCG 57.468 45.455 0.00 0.00 0.00 4.44
173 201 2.644676 GCCTCTATCCGCTTCCTTTTT 58.355 47.619 0.00 0.00 0.00 1.94
252 282 1.961919 GCCCTTCTGCTGCCCTTAATT 60.962 52.381 0.00 0.00 0.00 1.40
326 359 0.818296 CTAGAACACTAGGCACCGCT 59.182 55.000 0.00 0.00 32.44 5.52
406 442 3.124856 ACCCTATAACACTAGGCACCA 57.875 47.619 0.00 0.00 37.53 4.17
549 621 1.475280 CATCAGGTTCACATGGCAAGG 59.525 52.381 0.00 0.00 0.00 3.61
762 903 4.539509 AACTAGACTCGAAGTAGATGCG 57.460 45.455 0.00 0.00 0.00 4.73
988 1133 2.544277 CCCGCGTCATATTTCGTCCTTA 60.544 50.000 4.92 0.00 0.00 2.69
1030 1175 0.880441 CGCATGTGGGTGATGAAACA 59.120 50.000 0.00 0.00 0.00 2.83
1039 1184 1.557832 ACCAGTAATACGCATGTGGGT 59.442 47.619 11.65 7.84 43.82 4.51
1056 1201 1.059098 AGCTGATCAACTCACCACCA 58.941 50.000 0.00 0.00 0.00 4.17
1087 1232 1.272147 GGCCATCTTGGGTCTTTCTGT 60.272 52.381 0.00 0.00 38.19 3.41
1102 1247 3.351740 TGTTGACATAAATCACGGCCAT 58.648 40.909 2.24 0.00 0.00 4.40
1139 1302 2.564504 TCGTCATCATCCTCATCATCCC 59.435 50.000 0.00 0.00 0.00 3.85
1169 1386 3.507233 CCTTTGAGCTACAATGGCTTCAA 59.493 43.478 13.80 0.00 43.42 2.69
1191 1408 0.103937 CCTCCTCGCTCAACCTCATC 59.896 60.000 0.00 0.00 0.00 2.92
1220 1437 1.813513 CGGAATGATGTCCCATAGGC 58.186 55.000 0.00 0.00 33.74 3.93
1480 2079 9.469807 CTAAGCATATAGATCATCGGATTTACC 57.530 37.037 0.00 0.00 32.67 2.85
1571 2444 5.911752 AGCATATAGATCATCGGATTCACC 58.088 41.667 0.00 0.00 32.67 4.02
1717 2634 3.784701 AGTAGCCTCACACATTCTACG 57.215 47.619 0.00 0.00 35.90 3.51
1781 2699 6.341316 GCTTGATACCACAACTCTCAGATAA 58.659 40.000 0.00 0.00 0.00 1.75
1904 3091 1.705997 AAGCTCTTCCACCCAACCGT 61.706 55.000 0.00 0.00 0.00 4.83
1931 3118 4.401022 TGTCCAACATGAAGATTCTTGCT 58.599 39.130 3.03 0.00 36.22 3.91
2164 3365 9.607988 TCTCACAAACATTAACGATAATACCAT 57.392 29.630 0.00 0.00 30.50 3.55
2218 3454 5.384336 TCATGGAAATCAAGACAAGTCCAA 58.616 37.500 0.00 0.00 38.58 3.53
2339 3580 2.346803 GCATCTTTCTCTACCAACGCA 58.653 47.619 0.00 0.00 0.00 5.24
2367 3608 4.020573 CGGTCCATGGCCAGATATACTTAA 60.021 45.833 13.05 0.00 0.00 1.85
2375 3616 3.492353 CCCGGTCCATGGCCAGAT 61.492 66.667 13.05 0.00 0.00 2.90
2381 3622 4.820744 CCCAAGCCCGGTCCATGG 62.821 72.222 4.97 4.97 0.00 3.66
2382 3623 3.995506 GACCCAAGCCCGGTCCATG 62.996 68.421 0.00 0.00 43.48 3.66
2383 3624 3.728373 GACCCAAGCCCGGTCCAT 61.728 66.667 0.00 0.00 43.48 3.41
2391 3632 4.986708 TTTGGCCCGACCCAAGCC 62.987 66.667 0.00 0.00 45.03 4.35
2392 3633 2.503382 TTTTTGGCCCGACCCAAGC 61.503 57.895 0.00 0.00 45.03 4.01
2393 3634 3.863606 TTTTTGGCCCGACCCAAG 58.136 55.556 0.00 0.00 45.03 3.61
2414 3655 1.237285 CCTCAGTTTTCTGCCGTGGG 61.237 60.000 0.00 0.00 46.59 4.61
2415 3656 1.856265 GCCTCAGTTTTCTGCCGTGG 61.856 60.000 0.00 0.00 46.59 4.94
2416 3657 1.576421 GCCTCAGTTTTCTGCCGTG 59.424 57.895 0.00 0.00 46.59 4.94
2417 3658 1.600916 GGCCTCAGTTTTCTGCCGT 60.601 57.895 0.00 0.00 46.59 5.68
2418 3659 2.335712 GGGCCTCAGTTTTCTGCCG 61.336 63.158 0.84 0.00 46.59 5.69
2419 3660 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
2420 3661 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
2421 3662 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
2422 3663 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
2423 3664 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
2433 3674 3.096495 TCATGGTAGGGCCTGGGC 61.096 66.667 18.53 12.58 38.35 5.36
2434 3675 2.455565 CCTCATGGTAGGGCCTGGG 61.456 68.421 18.53 0.00 38.35 4.45
2435 3676 3.125376 GCCTCATGGTAGGGCCTGG 62.125 68.421 18.53 8.00 39.96 4.45
2436 3677 2.512896 GCCTCATGGTAGGGCCTG 59.487 66.667 18.53 0.00 39.96 4.85
2440 3681 1.807814 AAGTAGGCCTCATGGTAGGG 58.192 55.000 9.68 0.00 37.11 3.53
2441 3682 3.199946 TGAAAAGTAGGCCTCATGGTAGG 59.800 47.826 9.68 0.00 39.87 3.18
2442 3683 4.487714 TGAAAAGTAGGCCTCATGGTAG 57.512 45.455 9.68 0.00 35.27 3.18
2443 3684 4.843728 CTTGAAAAGTAGGCCTCATGGTA 58.156 43.478 9.68 0.00 39.70 3.25
2444 3685 3.690460 CTTGAAAAGTAGGCCTCATGGT 58.310 45.455 9.68 0.00 39.70 3.55
2462 3703 3.066814 GGGCCAGGCTTGAGCTTG 61.067 66.667 12.43 8.02 46.18 4.01
2463 3704 2.850828 GATGGGCCAGGCTTGAGCTT 62.851 60.000 13.78 0.00 41.70 3.74
2464 3705 3.345028 ATGGGCCAGGCTTGAGCT 61.345 61.111 13.78 0.00 41.70 4.09
2465 3706 2.832201 GATGGGCCAGGCTTGAGC 60.832 66.667 13.78 0.00 41.14 4.26
2466 3707 1.453379 CAGATGGGCCAGGCTTGAG 60.453 63.158 13.78 0.00 0.00 3.02
2467 3708 2.679092 CAGATGGGCCAGGCTTGA 59.321 61.111 13.78 0.00 0.00 3.02
2468 3709 2.441532 CCAGATGGGCCAGGCTTG 60.442 66.667 13.78 7.35 0.00 4.01
2469 3710 2.943265 ACCAGATGGGCCAGGCTT 60.943 61.111 13.78 0.00 42.05 4.35
2470 3711 3.415087 GACCAGATGGGCCAGGCT 61.415 66.667 13.78 9.31 42.05 4.58
2471 3712 2.786512 TTTGACCAGATGGGCCAGGC 62.787 60.000 13.78 1.26 44.80 4.85
2472 3713 0.251742 TTTTGACCAGATGGGCCAGG 60.252 55.000 13.78 10.90 44.80 4.45
2473 3714 1.180029 CTTTTGACCAGATGGGCCAG 58.820 55.000 13.78 0.00 44.80 4.85
2474 3715 0.899717 GCTTTTGACCAGATGGGCCA 60.900 55.000 9.61 9.61 44.80 5.36
2475 3716 1.607801 GGCTTTTGACCAGATGGGCC 61.608 60.000 1.29 0.00 44.80 5.80
2476 3717 1.893062 GGCTTTTGACCAGATGGGC 59.107 57.895 3.48 0.00 45.93 5.36
2515 3756 0.323087 TTTTAAGGAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
2516 3757 2.024414 CATTTTAAGGAAGAGGCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
2517 3758 1.405463 GCATTTTAAGGAAGAGGCCCG 59.595 52.381 0.00 0.00 0.00 6.13
2518 3759 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
2519 3760 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
2520 3761 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
2521 3762 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
2522 3763 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
2523 3764 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
2536 3777 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
2537 3778 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
2538 3779 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
2539 3780 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
2540 3781 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
2541 3782 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
2546 3787 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
2547 3788 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
2567 3808 1.531365 TTTTGAGCCCACCAGCAGG 60.531 57.895 0.00 0.00 42.21 4.85
2568 3809 0.825010 AGTTTTGAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
2569 3810 0.396974 AAGTTTTGAGCCCACCAGCA 60.397 50.000 0.00 0.00 34.23 4.41
2570 3811 1.541588 CTAAGTTTTGAGCCCACCAGC 59.458 52.381 0.00 0.00 0.00 4.85
2571 3812 2.162681 CCTAAGTTTTGAGCCCACCAG 58.837 52.381 0.00 0.00 0.00 4.00
2572 3813 1.821666 GCCTAAGTTTTGAGCCCACCA 60.822 52.381 0.00 0.00 0.00 4.17
2573 3814 0.888619 GCCTAAGTTTTGAGCCCACC 59.111 55.000 0.00 0.00 0.00 4.61
2574 3815 0.888619 GGCCTAAGTTTTGAGCCCAC 59.111 55.000 0.00 0.00 37.66 4.61
2575 3816 3.356814 GGCCTAAGTTTTGAGCCCA 57.643 52.632 0.00 0.00 37.66 5.36
2577 3818 1.546029 CTTGGGCCTAAGTTTTGAGCC 59.454 52.381 20.23 0.00 43.09 4.70
2578 3819 1.067565 GCTTGGGCCTAAGTTTTGAGC 60.068 52.381 27.53 10.66 0.00 4.26
2603 3844 2.825836 GATGGGCTTGCTCGTGGG 60.826 66.667 0.00 0.00 0.00 4.61
2604 3845 3.197790 CGATGGGCTTGCTCGTGG 61.198 66.667 0.00 0.00 0.00 4.94
2605 3846 3.197790 CCGATGGGCTTGCTCGTG 61.198 66.667 0.00 0.00 0.00 4.35
2606 3847 4.473520 CCCGATGGGCTTGCTCGT 62.474 66.667 0.00 0.00 35.35 4.18
2623 3864 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
2624 3865 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
2625 3866 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
2631 3872 0.465642 GCCCGACCCTAAAATCCAGG 60.466 60.000 0.00 0.00 0.00 4.45
2632 3873 0.465642 GGCCCGACCCTAAAATCCAG 60.466 60.000 0.00 0.00 0.00 3.86
2633 3874 0.917333 AGGCCCGACCCTAAAATCCA 60.917 55.000 0.00 0.00 40.58 3.41
2634 3875 0.465642 CAGGCCCGACCCTAAAATCC 60.466 60.000 0.00 0.00 40.58 3.01
2635 3876 0.465642 CCAGGCCCGACCCTAAAATC 60.466 60.000 0.00 0.00 40.58 2.17
2636 3877 1.613061 CCAGGCCCGACCCTAAAAT 59.387 57.895 0.00 0.00 40.58 1.82
2637 3878 2.608550 CCCAGGCCCGACCCTAAAA 61.609 63.158 0.00 0.00 40.58 1.52
2638 3879 3.012722 CCCAGGCCCGACCCTAAA 61.013 66.667 0.00 0.00 40.58 1.85
2639 3880 4.342086 ACCCAGGCCCGACCCTAA 62.342 66.667 0.00 0.00 40.58 2.69
2675 3916 1.786937 AGTAGTCCTGGCCATCTCAG 58.213 55.000 5.51 0.00 0.00 3.35
2676 3917 2.245028 AGTAGTAGTCCTGGCCATCTCA 59.755 50.000 5.51 0.00 0.00 3.27
2677 3918 2.952116 AGTAGTAGTCCTGGCCATCTC 58.048 52.381 5.51 0.00 0.00 2.75
2678 3919 4.079096 ACTTAGTAGTAGTCCTGGCCATCT 60.079 45.833 5.51 8.22 31.21 2.90
2679 3920 4.216708 ACTTAGTAGTAGTCCTGGCCATC 58.783 47.826 5.51 0.00 31.21 3.51
2680 3921 4.267341 ACTTAGTAGTAGTCCTGGCCAT 57.733 45.455 5.51 0.00 31.21 4.40
2681 3922 3.752359 ACTTAGTAGTAGTCCTGGCCA 57.248 47.619 4.71 4.71 31.21 5.36
2682 3923 5.633117 AGATACTTAGTAGTAGTCCTGGCC 58.367 45.833 0.00 0.00 40.09 5.36
2683 3924 7.094677 GCTAAGATACTTAGTAGTAGTCCTGGC 60.095 44.444 16.41 0.00 40.09 4.85
2684 3925 8.158789 AGCTAAGATACTTAGTAGTAGTCCTGG 58.841 40.741 16.41 0.00 40.09 4.45
2685 3926 8.995220 CAGCTAAGATACTTAGTAGTAGTCCTG 58.005 40.741 16.41 10.28 40.09 3.86
2686 3927 7.662669 GCAGCTAAGATACTTAGTAGTAGTCCT 59.337 40.741 16.41 3.92 40.09 3.85
2687 3928 7.444792 TGCAGCTAAGATACTTAGTAGTAGTCC 59.555 40.741 16.41 2.15 40.09 3.85
2688 3929 8.380743 TGCAGCTAAGATACTTAGTAGTAGTC 57.619 38.462 16.41 0.00 40.09 2.59
2689 3930 7.994334 ACTGCAGCTAAGATACTTAGTAGTAGT 59.006 37.037 15.27 18.72 40.09 2.73
2690 3931 8.286800 CACTGCAGCTAAGATACTTAGTAGTAG 58.713 40.741 15.27 17.32 40.09 2.57
2691 3932 7.991460 TCACTGCAGCTAAGATACTTAGTAGTA 59.009 37.037 15.27 9.89 40.96 1.82
2692 3933 6.829298 TCACTGCAGCTAAGATACTTAGTAGT 59.171 38.462 15.27 13.10 38.44 2.73
2693 3934 7.265647 TCACTGCAGCTAAGATACTTAGTAG 57.734 40.000 15.27 11.61 0.00 2.57
2694 3935 7.825331 ATCACTGCAGCTAAGATACTTAGTA 57.175 36.000 15.27 0.00 0.00 1.82
2695 3936 6.723298 ATCACTGCAGCTAAGATACTTAGT 57.277 37.500 15.27 0.00 0.00 2.24
2696 3937 6.983307 ACAATCACTGCAGCTAAGATACTTAG 59.017 38.462 15.27 12.44 0.00 2.18
2697 3938 6.878317 ACAATCACTGCAGCTAAGATACTTA 58.122 36.000 15.27 0.00 0.00 2.24
2698 3939 5.738909 ACAATCACTGCAGCTAAGATACTT 58.261 37.500 15.27 0.00 0.00 2.24
2699 3940 5.350504 ACAATCACTGCAGCTAAGATACT 57.649 39.130 15.27 0.00 0.00 2.12
2700 3941 6.428385 AAACAATCACTGCAGCTAAGATAC 57.572 37.500 15.27 0.00 0.00 2.24
2701 3942 7.555965 TCTAAACAATCACTGCAGCTAAGATA 58.444 34.615 15.27 0.00 0.00 1.98
2702 3943 6.409704 TCTAAACAATCACTGCAGCTAAGAT 58.590 36.000 15.27 9.56 0.00 2.40
2703 3944 5.793817 TCTAAACAATCACTGCAGCTAAGA 58.206 37.500 15.27 7.44 0.00 2.10
2714 3955 6.071463 CAGTAGCACGTTTCTAAACAATCAC 58.929 40.000 6.41 0.00 38.81 3.06
2715 3956 5.756347 ACAGTAGCACGTTTCTAAACAATCA 59.244 36.000 6.41 0.00 38.81 2.57
2717 3958 6.613755 AACAGTAGCACGTTTCTAAACAAT 57.386 33.333 6.41 0.00 38.81 2.71
2729 3970 7.807687 ACAACTATTACTTAACAGTAGCACG 57.192 36.000 0.00 0.00 36.81 5.34
2762 4003 4.137872 GGTACCCGCGCTACTGCA 62.138 66.667 5.56 0.00 39.64 4.41
2802 4043 2.833631 AACTTTACTAGTGGCGCTGT 57.166 45.000 11.58 9.37 37.12 4.40
2813 4054 7.040548 AGTCGCACTACTAGAGAAAACTTTACT 60.041 37.037 0.00 0.00 0.00 2.24
2818 4059 6.180771 GTAGTCGCACTACTAGAGAAAACT 57.819 41.667 15.13 0.00 45.70 2.66
2835 4076 4.087510 TCTTTCACATGTACGGTAGTCG 57.912 45.455 0.00 0.00 45.88 4.18
2836 4077 7.169308 CCATTATCTTTCACATGTACGGTAGTC 59.831 40.741 0.00 0.00 0.00 2.59
2837 4078 6.984474 CCATTATCTTTCACATGTACGGTAGT 59.016 38.462 0.00 0.00 0.00 2.73
2838 4079 7.207383 TCCATTATCTTTCACATGTACGGTAG 58.793 38.462 0.00 0.00 0.00 3.18
2839 4080 7.068962 TCTCCATTATCTTTCACATGTACGGTA 59.931 37.037 0.00 0.00 0.00 4.02
2840 4081 5.984725 TCCATTATCTTTCACATGTACGGT 58.015 37.500 0.00 0.00 0.00 4.83
2841 4082 6.280643 TCTCCATTATCTTTCACATGTACGG 58.719 40.000 0.00 0.00 0.00 4.02
2842 4083 7.116948 GGATCTCCATTATCTTTCACATGTACG 59.883 40.741 0.00 0.00 35.64 3.67
2843 4084 7.116948 CGGATCTCCATTATCTTTCACATGTAC 59.883 40.741 0.00 0.00 35.14 2.90
2844 4085 7.154656 CGGATCTCCATTATCTTTCACATGTA 58.845 38.462 0.00 0.00 35.14 2.29
2845 4086 5.994054 CGGATCTCCATTATCTTTCACATGT 59.006 40.000 0.00 0.00 35.14 3.21
2846 4087 5.106791 GCGGATCTCCATTATCTTTCACATG 60.107 44.000 0.00 0.00 35.14 3.21
2847 4088 4.999950 GCGGATCTCCATTATCTTTCACAT 59.000 41.667 0.00 0.00 35.14 3.21
2848 4089 4.380531 GCGGATCTCCATTATCTTTCACA 58.619 43.478 0.00 0.00 35.14 3.58
2849 4090 3.748568 GGCGGATCTCCATTATCTTTCAC 59.251 47.826 0.00 0.00 35.14 3.18
2850 4091 3.554960 CGGCGGATCTCCATTATCTTTCA 60.555 47.826 0.00 0.00 35.14 2.69
2851 4092 2.996621 CGGCGGATCTCCATTATCTTTC 59.003 50.000 0.00 0.00 35.14 2.62
2852 4093 2.872038 GCGGCGGATCTCCATTATCTTT 60.872 50.000 9.78 0.00 35.14 2.52
2853 4094 1.338200 GCGGCGGATCTCCATTATCTT 60.338 52.381 9.78 0.00 35.14 2.40
2854 4095 0.247736 GCGGCGGATCTCCATTATCT 59.752 55.000 9.78 0.00 35.14 1.98
2855 4096 0.247736 AGCGGCGGATCTCCATTATC 59.752 55.000 9.78 0.00 35.14 1.75
2856 4097 0.036952 CAGCGGCGGATCTCCATTAT 60.037 55.000 9.78 0.00 35.14 1.28
2857 4098 1.367471 CAGCGGCGGATCTCCATTA 59.633 57.895 9.78 0.00 35.14 1.90
2858 4099 2.109799 CAGCGGCGGATCTCCATT 59.890 61.111 9.78 0.00 35.14 3.16
2859 4100 3.157217 GACAGCGGCGGATCTCCAT 62.157 63.158 9.78 0.00 35.14 3.41
2860 4101 3.838271 GACAGCGGCGGATCTCCA 61.838 66.667 9.78 0.00 35.14 3.86
2861 4102 4.933064 CGACAGCGGCGGATCTCC 62.933 72.222 9.78 0.00 0.00 3.71
2862 4103 4.194720 ACGACAGCGGCGGATCTC 62.195 66.667 9.78 0.00 43.17 2.75
2863 4104 4.194720 GACGACAGCGGCGGATCT 62.195 66.667 9.78 0.00 43.17 2.75
2871 4112 0.030235 TATCCATTCCGACGACAGCG 59.970 55.000 0.00 0.00 44.79 5.18
2872 4113 2.329379 GATATCCATTCCGACGACAGC 58.671 52.381 0.00 0.00 0.00 4.40
2873 4114 2.947852 GGATATCCATTCCGACGACAG 58.052 52.381 17.34 0.00 35.64 3.51
2881 4122 1.156736 CGTTGGCGGATATCCATTCC 58.843 55.000 21.70 17.66 35.14 3.01
2882 4123 0.517316 GCGTTGGCGGATATCCATTC 59.483 55.000 21.70 10.25 38.78 2.67
2883 4124 0.889186 GGCGTTGGCGGATATCCATT 60.889 55.000 21.70 0.00 41.24 3.16
2884 4125 1.302511 GGCGTTGGCGGATATCCAT 60.303 57.895 21.70 0.00 41.24 3.41
2885 4126 2.110213 GGCGTTGGCGGATATCCA 59.890 61.111 21.70 0.00 41.24 3.41
2886 4127 1.961277 CTGGCGTTGGCGGATATCC 60.961 63.158 12.14 12.14 41.24 2.59
2887 4128 2.607892 GCTGGCGTTGGCGGATATC 61.608 63.158 3.07 0.00 41.24 1.63
2888 4129 2.591715 GCTGGCGTTGGCGGATAT 60.592 61.111 3.07 0.00 41.24 1.63
2889 4130 4.849310 GGCTGGCGTTGGCGGATA 62.849 66.667 3.07 0.00 41.24 2.59
2894 4135 4.752879 TCTACGGCTGGCGTTGGC 62.753 66.667 33.45 0.00 38.90 4.52
2895 4136 1.940883 TAGTCTACGGCTGGCGTTGG 61.941 60.000 33.45 24.47 0.00 3.77
2896 4137 0.525668 CTAGTCTACGGCTGGCGTTG 60.526 60.000 33.45 29.69 0.00 4.10
2897 4138 0.964358 ACTAGTCTACGGCTGGCGTT 60.964 55.000 33.45 18.37 0.00 4.84
2898 4139 0.964358 AACTAGTCTACGGCTGGCGT 60.964 55.000 31.29 31.29 0.00 5.68
2899 4140 0.172803 AAACTAGTCTACGGCTGGCG 59.827 55.000 22.58 22.58 0.00 5.69
2900 4141 2.381725 AAAACTAGTCTACGGCTGGC 57.618 50.000 0.00 0.00 0.00 4.85
2901 4142 5.517322 AGATAAAACTAGTCTACGGCTGG 57.483 43.478 0.00 0.00 0.00 4.85
2902 4143 7.705214 ACTAAGATAAAACTAGTCTACGGCTG 58.295 38.462 0.00 0.00 0.00 4.85
2903 4144 7.774625 AGACTAAGATAAAACTAGTCTACGGCT 59.225 37.037 8.80 0.00 43.75 5.52
2904 4145 7.856894 CAGACTAAGATAAAACTAGTCTACGGC 59.143 40.741 9.92 0.00 43.75 5.68
2905 4146 7.856894 GCAGACTAAGATAAAACTAGTCTACGG 59.143 40.741 9.92 1.78 43.75 4.02
2906 4147 8.614346 AGCAGACTAAGATAAAACTAGTCTACG 58.386 37.037 9.92 2.35 43.75 3.51
2925 4166 9.360901 TCTTCATACTAGAAATGATAGCAGACT 57.639 33.333 11.56 0.00 33.52 3.24
2926 4167 9.405587 GTCTTCATACTAGAAATGATAGCAGAC 57.594 37.037 17.05 17.05 33.64 3.51
2927 4168 9.360901 AGTCTTCATACTAGAAATGATAGCAGA 57.639 33.333 11.56 9.25 33.52 4.26
2928 4169 9.409312 CAGTCTTCATACTAGAAATGATAGCAG 57.591 37.037 11.56 7.64 33.52 4.24
2929 4170 8.918116 ACAGTCTTCATACTAGAAATGATAGCA 58.082 33.333 11.56 0.00 33.52 3.49
2930 4171 9.757227 AACAGTCTTCATACTAGAAATGATAGC 57.243 33.333 11.56 6.63 33.52 2.97
2934 4175 9.996554 TTTCAACAGTCTTCATACTAGAAATGA 57.003 29.630 0.00 2.47 0.00 2.57
2938 4179 9.778741 ACATTTTCAACAGTCTTCATACTAGAA 57.221 29.630 0.00 0.00 0.00 2.10
2970 4211 9.248291 GCGGATTTCATATAAACATGACAAAAT 57.752 29.630 0.00 0.00 34.69 1.82
2971 4212 7.704472 GGCGGATTTCATATAAACATGACAAAA 59.296 33.333 0.00 0.00 34.69 2.44
2972 4213 7.199766 GGCGGATTTCATATAAACATGACAAA 58.800 34.615 0.00 0.00 34.69 2.83
2973 4214 6.512578 CGGCGGATTTCATATAAACATGACAA 60.513 38.462 0.00 0.00 34.69 3.18
2974 4215 5.049749 CGGCGGATTTCATATAAACATGACA 60.050 40.000 0.00 0.00 34.69 3.58
2975 4216 5.049680 ACGGCGGATTTCATATAAACATGAC 60.050 40.000 13.24 0.00 34.69 3.06
2976 4217 5.049749 CACGGCGGATTTCATATAAACATGA 60.050 40.000 13.24 0.00 33.10 3.07
2977 4218 5.146460 CACGGCGGATTTCATATAAACATG 58.854 41.667 13.24 0.00 0.00 3.21
2978 4219 4.819630 ACACGGCGGATTTCATATAAACAT 59.180 37.500 13.24 0.00 0.00 2.71
2979 4220 4.193090 ACACGGCGGATTTCATATAAACA 58.807 39.130 13.24 0.00 0.00 2.83
2980 4221 4.806342 ACACGGCGGATTTCATATAAAC 57.194 40.909 13.24 0.00 0.00 2.01
2981 4222 5.574082 CAAACACGGCGGATTTCATATAAA 58.426 37.500 13.24 0.00 0.00 1.40
2982 4223 4.496673 GCAAACACGGCGGATTTCATATAA 60.497 41.667 13.24 0.00 0.00 0.98
2983 4224 3.002862 GCAAACACGGCGGATTTCATATA 59.997 43.478 13.24 0.00 0.00 0.86
2984 4225 2.223479 GCAAACACGGCGGATTTCATAT 60.223 45.455 13.24 0.00 0.00 1.78
2985 4226 1.131504 GCAAACACGGCGGATTTCATA 59.868 47.619 13.24 0.00 0.00 2.15
2986 4227 0.109319 GCAAACACGGCGGATTTCAT 60.109 50.000 13.24 0.00 0.00 2.57
2987 4228 1.284408 GCAAACACGGCGGATTTCA 59.716 52.632 13.24 0.00 0.00 2.69
2988 4229 0.109319 ATGCAAACACGGCGGATTTC 60.109 50.000 13.24 6.30 0.00 2.17
2989 4230 1.169577 TATGCAAACACGGCGGATTT 58.830 45.000 13.24 8.42 0.00 2.17
2990 4231 1.169577 TTATGCAAACACGGCGGATT 58.830 45.000 13.24 1.17 0.00 3.01
2991 4232 1.169577 TTTATGCAAACACGGCGGAT 58.830 45.000 13.24 0.00 0.00 4.18
2992 4233 1.169577 ATTTATGCAAACACGGCGGA 58.830 45.000 13.24 0.00 0.00 5.54
2993 4234 1.989430 AATTTATGCAAACACGGCGG 58.011 45.000 13.24 2.35 0.00 6.13
2994 4235 2.026272 CGAAATTTATGCAAACACGGCG 59.974 45.455 4.80 4.80 0.00 6.46
2995 4236 2.983803 ACGAAATTTATGCAAACACGGC 59.016 40.909 0.00 0.00 0.00 5.68
2996 4237 4.201353 CGAACGAAATTTATGCAAACACGG 60.201 41.667 0.00 0.00 0.00 4.94
2997 4238 4.201353 CCGAACGAAATTTATGCAAACACG 60.201 41.667 0.00 0.00 0.00 4.49
2998 4239 4.677832 ACCGAACGAAATTTATGCAAACAC 59.322 37.500 0.00 0.00 0.00 3.32
2999 4240 4.861210 ACCGAACGAAATTTATGCAAACA 58.139 34.783 0.00 0.00 0.00 2.83
3000 4241 5.815964 AACCGAACGAAATTTATGCAAAC 57.184 34.783 0.00 0.00 0.00 2.93
3001 4242 6.670233 ACTAACCGAACGAAATTTATGCAAA 58.330 32.000 0.00 0.00 0.00 3.68
3002 4243 6.243811 ACTAACCGAACGAAATTTATGCAA 57.756 33.333 0.00 0.00 0.00 4.08
3003 4244 5.866335 ACTAACCGAACGAAATTTATGCA 57.134 34.783 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.