Multiple sequence alignment - TraesCS5B01G512900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G512900 chr5B 100.000 6863 0 0 1 6863 678319175 678312313 0.000000e+00 12674.0
1 TraesCS5B01G512900 chr5B 91.113 1868 112 22 1916 3741 105539479 105537624 0.000000e+00 2481.0
2 TraesCS5B01G512900 chr5B 89.198 1185 76 12 1916 3070 106951596 106952758 0.000000e+00 1432.0
3 TraesCS5B01G512900 chr5B 89.482 637 33 16 3141 3765 106953053 106953667 0.000000e+00 774.0
4 TraesCS5B01G512900 chr5B 89.358 545 42 9 1011 1550 106950533 106951066 0.000000e+00 671.0
5 TraesCS5B01G512900 chr5B 88.991 545 44 9 1011 1550 105540537 105540004 0.000000e+00 660.0
6 TraesCS5B01G512900 chr5B 84.694 196 17 5 6221 6411 678205949 678205762 4.230000e-42 183.0
7 TraesCS5B01G512900 chr5B 91.818 110 7 2 4205 4314 106953968 106954075 1.190000e-32 152.0
8 TraesCS5B01G512900 chr5B 84.259 108 12 4 3980 4084 106953799 106953904 4.380000e-17 100.0
9 TraesCS5B01G512900 chr4A 91.441 2699 141 36 1021 3663 631904749 631902085 0.000000e+00 3622.0
10 TraesCS5B01G512900 chr4A 90.238 2776 147 36 4163 6863 631901688 631898962 0.000000e+00 3511.0
11 TraesCS5B01G512900 chr4A 84.444 990 108 15 1914 2894 58787949 58786997 0.000000e+00 933.0
12 TraesCS5B01G512900 chr4A 89.440 464 24 10 2 457 631912019 631911573 4.650000e-156 562.0
13 TraesCS5B01G512900 chr4A 84.310 529 66 14 1018 1544 58789120 58788607 1.030000e-137 501.0
14 TraesCS5B01G512900 chr4A 83.838 396 25 10 3702 4059 631902081 631901687 2.370000e-89 340.0
15 TraesCS5B01G512900 chr4A 90.647 139 9 4 4037 4172 445063193 445063056 1.520000e-41 182.0
16 TraesCS5B01G512900 chr4A 76.453 344 54 16 478 815 631910901 631910579 1.980000e-35 161.0
17 TraesCS5B01G512900 chr5D 90.129 2786 128 65 4163 6863 537658051 537655328 0.000000e+00 3485.0
18 TraesCS5B01G512900 chr5D 92.986 1768 67 14 1910 3663 537660151 537658427 0.000000e+00 2525.0
19 TraesCS5B01G512900 chr5D 91.507 1201 74 7 1916 3098 97577327 97578517 0.000000e+00 1628.0
20 TraesCS5B01G512900 chr5D 84.176 1207 115 40 736 1905 537661412 537660245 0.000000e+00 1101.0
21 TraesCS5B01G512900 chr5D 92.879 660 33 5 3118 3765 97578662 97579319 0.000000e+00 946.0
22 TraesCS5B01G512900 chr5D 88.624 545 46 10 1011 1550 97576270 97576803 0.000000e+00 649.0
23 TraesCS5B01G512900 chr5D 89.100 422 24 8 34 450 537662821 537662417 7.940000e-139 505.0
24 TraesCS5B01G512900 chr5D 90.674 193 9 3 4133 4317 97579739 97579930 1.480000e-61 248.0
25 TraesCS5B01G512900 chr5D 89.785 186 6 6 3702 3885 537658422 537658248 6.930000e-55 226.0
26 TraesCS5B01G512900 chr5D 97.222 36 0 1 4925 4959 45378123 45378158 7.430000e-05 60.2
27 TraesCS5B01G512900 chr5A 87.763 1520 109 31 1635 3099 106166647 106165150 0.000000e+00 1705.0
28 TraesCS5B01G512900 chr5A 90.677 665 43 10 3118 3765 106164844 106164182 0.000000e+00 867.0
29 TraesCS5B01G512900 chr5A 89.194 546 41 12 1011 1550 106167374 106166841 0.000000e+00 665.0
30 TraesCS5B01G512900 chr5A 92.308 156 11 1 4163 4317 106149930 106149775 3.220000e-53 220.0
31 TraesCS5B01G512900 chr5A 91.489 47 2 2 4925 4969 36331800 36331754 5.750000e-06 63.9
32 TraesCS5B01G512900 chr2B 88.154 937 78 21 1908 2828 10727267 10728186 0.000000e+00 1085.0
33 TraesCS5B01G512900 chr2B 87.500 488 43 14 1018 1502 10726151 10726623 1.300000e-151 547.0
34 TraesCS5B01G512900 chr2B 93.233 133 6 3 4045 4174 359312193 359312325 7.020000e-45 193.0
35 TraesCS5B01G512900 chr7D 86.444 509 48 11 1275 1770 158431841 158431341 7.830000e-149 538.0
36 TraesCS5B01G512900 chr7D 86.789 492 47 9 1275 1753 366418252 366417766 3.640000e-147 532.0
37 TraesCS5B01G512900 chrUn 87.234 470 46 7 1297 1753 374993357 374993825 2.190000e-144 523.0
38 TraesCS5B01G512900 chrUn 86.809 470 48 8 1297 1753 220535023 220534555 4.750000e-141 512.0
39 TraesCS5B01G512900 chr7A 86.596 470 49 8 1297 1753 171843953 171844421 2.210000e-139 507.0
40 TraesCS5B01G512900 chr7A 86.383 470 50 7 1297 1753 171729438 171729906 1.030000e-137 501.0
41 TraesCS5B01G512900 chr1D 96.639 119 4 0 4051 4169 349422918 349423036 1.510000e-46 198.0
42 TraesCS5B01G512900 chr7B 95.935 123 2 3 4058 4179 108403266 108403146 5.430000e-46 196.0
43 TraesCS5B01G512900 chr3A 97.391 115 3 0 4058 4172 152176379 152176493 5.430000e-46 196.0
44 TraesCS5B01G512900 chr1B 95.122 123 5 1 4047 4169 491705678 491705799 7.020000e-45 193.0
45 TraesCS5B01G512900 chr3B 95.082 122 5 1 4048 4169 577429196 577429316 2.530000e-44 191.0
46 TraesCS5B01G512900 chr3D 94.355 124 6 1 4058 4180 582122932 582123055 9.090000e-44 189.0
47 TraesCS5B01G512900 chr6A 91.852 135 6 4 4058 4188 360569325 360569458 4.230000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G512900 chr5B 678312313 678319175 6862 True 12674.00 12674 100.000000 1 6863 1 chr5B.!!$R2 6862
1 TraesCS5B01G512900 chr5B 105537624 105540537 2913 True 1570.50 2481 90.052000 1011 3741 2 chr5B.!!$R3 2730
2 TraesCS5B01G512900 chr5B 106950533 106954075 3542 False 625.80 1432 88.823000 1011 4314 5 chr5B.!!$F1 3303
3 TraesCS5B01G512900 chr4A 631898962 631904749 5787 True 2491.00 3622 88.505667 1021 6863 3 chr4A.!!$R3 5842
4 TraesCS5B01G512900 chr4A 58786997 58789120 2123 True 717.00 933 84.377000 1018 2894 2 chr4A.!!$R2 1876
5 TraesCS5B01G512900 chr4A 631910579 631912019 1440 True 361.50 562 82.946500 2 815 2 chr4A.!!$R4 813
6 TraesCS5B01G512900 chr5D 537655328 537662821 7493 True 1568.40 3485 89.235200 34 6863 5 chr5D.!!$R1 6829
7 TraesCS5B01G512900 chr5D 97576270 97579930 3660 False 867.75 1628 90.921000 1011 4317 4 chr5D.!!$F2 3306
8 TraesCS5B01G512900 chr5A 106164182 106167374 3192 True 1079.00 1705 89.211333 1011 3765 3 chr5A.!!$R3 2754
9 TraesCS5B01G512900 chr2B 10726151 10728186 2035 False 816.00 1085 87.827000 1018 2828 2 chr2B.!!$F2 1810
10 TraesCS5B01G512900 chr7D 158431341 158431841 500 True 538.00 538 86.444000 1275 1770 1 chr7D.!!$R1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 1228 0.027324 GTCGACGAGGTATGACGGAC 59.973 60.000 0.0 0.0 0.00 4.79 F
783 1670 0.171455 CGTCTCTCTGTGGGCTGTAC 59.829 60.000 0.0 0.0 0.00 2.90 F
1724 2809 0.318762 GAGCGGACTCTGTTCTGGTT 59.681 55.000 0.0 0.0 40.03 3.67 F
3326 5091 1.212935 TGCCTTTCCTTCTATGGCTCC 59.787 52.381 0.0 0.0 43.57 4.70 F
4218 6351 0.099259 CACACACACACAGGCACAAG 59.901 55.000 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 3440 0.323725 AGCGATGGCCATCAACCTTT 60.324 50.000 38.08 17.72 41.24 3.11 R
2452 3880 2.035961 GTGCAGCATAGAAGATACGGGA 59.964 50.000 0.00 0.00 0.00 5.14 R
3451 5229 0.249322 ATTCTATAGCGCGCGGTGTT 60.249 50.000 41.12 29.72 0.00 3.32 R
4382 6515 0.251341 CCCTTAACTGCAGCTGGGTT 60.251 55.000 17.12 3.29 0.00 4.11 R
6043 8236 1.005569 TCTCGACAGTAGGGGATGTGT 59.994 52.381 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 82 1.213430 TCCGAAAAGTTTGGACCCAGT 59.787 47.619 0.00 0.00 0.00 4.00
79 83 2.028876 CCGAAAAGTTTGGACCCAGTT 58.971 47.619 0.00 0.00 0.00 3.16
80 84 2.034179 CCGAAAAGTTTGGACCCAGTTC 59.966 50.000 0.00 0.00 0.00 3.01
81 85 2.034179 CGAAAAGTTTGGACCCAGTTCC 59.966 50.000 0.00 0.00 36.03 3.62
82 86 2.838637 AAAGTTTGGACCCAGTTCCA 57.161 45.000 0.00 0.00 44.39 3.53
83 87 2.364972 AAGTTTGGACCCAGTTCCAG 57.635 50.000 0.00 0.00 46.61 3.86
84 88 1.222567 AGTTTGGACCCAGTTCCAGT 58.777 50.000 0.00 0.00 46.61 4.00
110 114 1.686052 CTACTCATCCACTCCCTGCTC 59.314 57.143 0.00 0.00 0.00 4.26
111 115 0.042431 ACTCATCCACTCCCTGCTCT 59.958 55.000 0.00 0.00 0.00 4.09
112 116 1.289231 ACTCATCCACTCCCTGCTCTA 59.711 52.381 0.00 0.00 0.00 2.43
113 117 1.686052 CTCATCCACTCCCTGCTCTAC 59.314 57.143 0.00 0.00 0.00 2.59
114 118 1.289231 TCATCCACTCCCTGCTCTACT 59.711 52.381 0.00 0.00 0.00 2.57
128 132 2.032528 TACTGGGCACTGCACTGC 59.967 61.111 9.92 9.59 34.23 4.40
132 136 3.755628 GGGCACTGCACTGCATGG 61.756 66.667 18.28 0.94 38.13 3.66
195 199 3.216147 AGGCGACCAAATGATTTTTCG 57.784 42.857 12.15 12.15 0.00 3.46
229 235 4.020218 ACCTATGTGATGGTTATGGGATCG 60.020 45.833 0.00 0.00 31.62 3.69
266 272 2.673368 GGATCATCAAACTTTCGCTCGT 59.327 45.455 0.00 0.00 0.00 4.18
268 274 4.026475 GGATCATCAAACTTTCGCTCGTAG 60.026 45.833 0.00 0.00 0.00 3.51
326 337 1.165270 GTGAGTAGCAAATGCCGGTT 58.835 50.000 1.90 0.00 43.38 4.44
337 348 1.244019 ATGCCGGTTCTTGTCCTTGC 61.244 55.000 1.90 0.00 0.00 4.01
384 395 4.593864 GCGAGCCCTCCGATGGTC 62.594 72.222 0.00 0.00 0.00 4.02
419 430 2.877691 GCCACCGGCTTCAACATC 59.122 61.111 0.00 0.00 46.69 3.06
457 468 3.376078 CAATGGCTGCCCGCTTGT 61.376 61.111 17.53 0.00 39.13 3.16
459 470 2.639327 AATGGCTGCCCGCTTGTTC 61.639 57.895 17.53 0.00 39.13 3.18
463 474 2.690778 GCTGCCCGCTTGTTCGAAT 61.691 57.895 0.00 0.00 35.14 3.34
464 475 1.135315 CTGCCCGCTTGTTCGAATG 59.865 57.895 0.00 0.00 0.00 2.67
465 476 2.257286 CTGCCCGCTTGTTCGAATGG 62.257 60.000 0.00 0.00 0.00 3.16
466 477 3.051392 GCCCGCTTGTTCGAATGGG 62.051 63.158 0.00 9.34 39.72 4.00
467 478 2.485122 CCGCTTGTTCGAATGGGC 59.515 61.111 0.00 5.17 0.00 5.36
468 479 2.040544 CCGCTTGTTCGAATGGGCT 61.041 57.895 0.00 0.00 0.00 5.19
469 480 1.425428 CGCTTGTTCGAATGGGCTC 59.575 57.895 0.00 0.00 0.00 4.70
471 482 1.098050 GCTTGTTCGAATGGGCTCAT 58.902 50.000 0.00 0.00 34.56 2.90
539 1217 2.225963 AGTTAGTGTTGAGGTCGACGAG 59.774 50.000 9.92 0.00 32.90 4.18
543 1221 1.471684 GTGTTGAGGTCGACGAGGTAT 59.528 52.381 9.92 0.00 32.90 2.73
548 1226 1.094073 AGGTCGACGAGGTATGACGG 61.094 60.000 9.92 0.00 32.17 4.79
550 1228 0.027324 GTCGACGAGGTATGACGGAC 59.973 60.000 0.00 0.00 0.00 4.79
557 1235 2.718073 GGTATGACGGACGGTGGCT 61.718 63.158 0.00 0.00 0.00 4.75
559 1237 1.679641 TATGACGGACGGTGGCTGA 60.680 57.895 0.00 0.00 0.00 4.26
563 1241 4.003788 CGGACGGTGGCTGAAGGT 62.004 66.667 0.00 0.00 0.00 3.50
564 1242 2.358737 GGACGGTGGCTGAAGGTG 60.359 66.667 0.00 0.00 0.00 4.00
566 1244 1.070786 GACGGTGGCTGAAGGTGAA 59.929 57.895 0.00 0.00 0.00 3.18
570 1248 2.032528 TGGCTGAAGGTGAAGGCG 59.967 61.111 0.00 0.00 41.65 5.52
572 1250 1.078143 GGCTGAAGGTGAAGGCGAT 60.078 57.895 0.00 0.00 0.00 4.58
573 1251 1.372087 GGCTGAAGGTGAAGGCGATG 61.372 60.000 0.00 0.00 0.00 3.84
576 1254 0.321564 TGAAGGTGAAGGCGATGGTG 60.322 55.000 0.00 0.00 0.00 4.17
577 1255 1.002134 AAGGTGAAGGCGATGGTGG 60.002 57.895 0.00 0.00 0.00 4.61
584 1262 4.875713 GGCGATGGTGGCCGGATT 62.876 66.667 5.05 0.00 41.39 3.01
585 1263 3.585990 GCGATGGTGGCCGGATTG 61.586 66.667 5.05 0.00 0.00 2.67
596 1274 0.801836 GCCGGATTGTGAAATTGCGG 60.802 55.000 5.05 0.00 43.60 5.69
599 1277 1.181786 GGATTGTGAAATTGCGGGGA 58.818 50.000 0.00 0.00 0.00 4.81
617 1295 2.207788 GACCGCCGGATGGGTTTTTG 62.208 60.000 11.71 0.00 36.46 2.44
618 1296 2.571231 CGCCGGATGGGTTTTTGG 59.429 61.111 5.05 0.00 38.44 3.28
619 1297 1.974343 CGCCGGATGGGTTTTTGGA 60.974 57.895 5.05 0.00 38.44 3.53
620 1298 1.319614 CGCCGGATGGGTTTTTGGAT 61.320 55.000 5.05 0.00 38.44 3.41
621 1299 0.175531 GCCGGATGGGTTTTTGGATG 59.824 55.000 5.05 0.00 38.44 3.51
622 1300 0.823460 CCGGATGGGTTTTTGGATGG 59.177 55.000 0.00 0.00 0.00 3.51
623 1301 1.618345 CCGGATGGGTTTTTGGATGGA 60.618 52.381 0.00 0.00 0.00 3.41
624 1302 2.387757 CGGATGGGTTTTTGGATGGAT 58.612 47.619 0.00 0.00 0.00 3.41
625 1303 2.765699 CGGATGGGTTTTTGGATGGATT 59.234 45.455 0.00 0.00 0.00 3.01
626 1304 3.181476 CGGATGGGTTTTTGGATGGATTC 60.181 47.826 0.00 0.00 0.00 2.52
627 1305 3.181476 GGATGGGTTTTTGGATGGATTCG 60.181 47.826 0.00 0.00 0.00 3.34
628 1306 3.162147 TGGGTTTTTGGATGGATTCGA 57.838 42.857 0.00 0.00 0.00 3.71
629 1307 3.088532 TGGGTTTTTGGATGGATTCGAG 58.911 45.455 0.00 0.00 0.00 4.04
630 1308 2.427095 GGGTTTTTGGATGGATTCGAGG 59.573 50.000 0.00 0.00 0.00 4.63
631 1309 2.159240 GGTTTTTGGATGGATTCGAGGC 60.159 50.000 0.00 0.00 0.00 4.70
632 1310 2.491693 GTTTTTGGATGGATTCGAGGCA 59.508 45.455 0.00 0.00 0.00 4.75
643 1321 3.630204 CGAGGCATCGGAATTCGG 58.370 61.111 13.95 6.67 45.39 4.30
645 1323 2.588877 AGGCATCGGAATTCGGCG 60.589 61.111 0.00 0.00 39.77 6.46
649 1327 2.895372 ATCGGAATTCGGCGTGGC 60.895 61.111 6.85 0.00 39.77 5.01
650 1328 3.673956 ATCGGAATTCGGCGTGGCA 62.674 57.895 6.85 0.00 39.77 4.92
664 1342 2.046217 GGCAGACTTTCGGACCCC 60.046 66.667 0.00 0.00 0.00 4.95
714 1394 1.202222 GGATCAGCACGGCTCAATTTG 60.202 52.381 0.00 0.00 36.40 2.32
721 1401 1.133025 CACGGCTCAATTTGGTGATCC 59.867 52.381 0.00 0.00 31.64 3.36
725 1405 1.812571 GCTCAATTTGGTGATCCGTGT 59.187 47.619 0.00 0.00 36.30 4.49
728 1408 3.481453 TCAATTTGGTGATCCGTGTTGA 58.519 40.909 0.00 0.00 36.30 3.18
734 1414 1.068474 GTGATCCGTGTTGAAGACCG 58.932 55.000 0.00 0.00 0.00 4.79
753 1640 3.875134 ACCGAAAAGTGTTCTCGACATTT 59.125 39.130 0.00 0.00 41.10 2.32
783 1670 0.171455 CGTCTCTCTGTGGGCTGTAC 59.829 60.000 0.00 0.00 0.00 2.90
785 1672 1.896465 GTCTCTCTGTGGGCTGTACTT 59.104 52.381 0.00 0.00 0.00 2.24
786 1673 2.300437 GTCTCTCTGTGGGCTGTACTTT 59.700 50.000 0.00 0.00 0.00 2.66
809 1696 3.788333 TTTTATGGCTTGAGCTGCATC 57.212 42.857 1.02 0.00 41.70 3.91
811 1698 0.465287 TATGGCTTGAGCTGCATCGA 59.535 50.000 1.02 0.00 41.70 3.59
814 1701 0.532417 GGCTTGAGCTGCATCGATCT 60.532 55.000 1.02 0.00 41.70 2.75
851 1750 5.026790 AGGGCTATATTGATCTAGACCACC 58.973 45.833 12.82 0.00 44.42 4.61
853 1752 4.705507 GGCTATATTGATCTAGACCACCGA 59.294 45.833 0.00 0.00 0.00 4.69
865 1764 3.853104 CCACCGAGCATGGTTCTAA 57.147 52.632 0.00 0.00 41.38 2.10
942 1842 5.754890 AGAAAATGGCAACTGATTCACAAAC 59.245 36.000 0.00 0.00 37.61 2.93
944 1844 1.686052 TGGCAACTGATTCACAAACCC 59.314 47.619 0.00 0.00 37.61 4.11
945 1845 1.963515 GGCAACTGATTCACAAACCCT 59.036 47.619 0.00 0.00 0.00 4.34
946 1846 3.153919 GGCAACTGATTCACAAACCCTA 58.846 45.455 0.00 0.00 0.00 3.53
947 1847 3.191371 GGCAACTGATTCACAAACCCTAG 59.809 47.826 0.00 0.00 0.00 3.02
948 1848 3.366374 GCAACTGATTCACAAACCCTAGC 60.366 47.826 0.00 0.00 0.00 3.42
949 1849 3.788227 ACTGATTCACAAACCCTAGCA 57.212 42.857 0.00 0.00 0.00 3.49
950 1850 4.098914 ACTGATTCACAAACCCTAGCAA 57.901 40.909 0.00 0.00 0.00 3.91
951 1851 4.666512 ACTGATTCACAAACCCTAGCAAT 58.333 39.130 0.00 0.00 0.00 3.56
952 1852 5.815581 ACTGATTCACAAACCCTAGCAATA 58.184 37.500 0.00 0.00 0.00 1.90
953 1853 6.245408 ACTGATTCACAAACCCTAGCAATAA 58.755 36.000 0.00 0.00 0.00 1.40
954 1854 6.891908 ACTGATTCACAAACCCTAGCAATAAT 59.108 34.615 0.00 0.00 0.00 1.28
955 1855 7.099266 TGATTCACAAACCCTAGCAATAATG 57.901 36.000 0.00 0.00 0.00 1.90
956 1856 6.663093 TGATTCACAAACCCTAGCAATAATGT 59.337 34.615 0.00 0.00 0.00 2.71
957 1857 6.509418 TTCACAAACCCTAGCAATAATGTC 57.491 37.500 0.00 0.00 0.00 3.06
958 1858 5.815581 TCACAAACCCTAGCAATAATGTCT 58.184 37.500 0.00 0.00 0.00 3.41
959 1859 5.880332 TCACAAACCCTAGCAATAATGTCTC 59.120 40.000 0.00 0.00 0.00 3.36
960 1860 5.647658 CACAAACCCTAGCAATAATGTCTCA 59.352 40.000 0.00 0.00 0.00 3.27
961 1861 6.150976 CACAAACCCTAGCAATAATGTCTCAA 59.849 38.462 0.00 0.00 0.00 3.02
962 1862 6.719370 ACAAACCCTAGCAATAATGTCTCAAA 59.281 34.615 0.00 0.00 0.00 2.69
963 1863 7.232534 ACAAACCCTAGCAATAATGTCTCAAAA 59.767 33.333 0.00 0.00 0.00 2.44
964 1864 7.775053 AACCCTAGCAATAATGTCTCAAAAA 57.225 32.000 0.00 0.00 0.00 1.94
1083 2011 4.227134 CAGGCGAGGATGGGTCGG 62.227 72.222 0.00 0.00 37.91 4.79
1279 2207 1.151777 CGTCAACGACACAGGCAAGT 61.152 55.000 0.00 0.00 43.02 3.16
1332 2266 2.491621 GGGCTGCTTCGATTTGGC 59.508 61.111 0.00 0.00 0.00 4.52
1469 2413 1.150567 CTTCATCGAGCCGCTCCTTG 61.151 60.000 14.85 11.99 0.00 3.61
1504 2448 1.450312 CAGGTCGCCCTTGTCCATC 60.450 63.158 0.00 0.00 39.89 3.51
1581 2577 6.209192 TGATTGATTGCCATGTTTTCTACTGT 59.791 34.615 0.00 0.00 0.00 3.55
1588 2584 6.296026 TGCCATGTTTTCTACTGTAACTCTT 58.704 36.000 0.00 0.00 0.00 2.85
1601 2598 9.448294 CTACTGTAACTCTTGAATTACGATACC 57.552 37.037 0.00 0.00 34.60 2.73
1612 2609 5.012046 TGAATTACGATACCATCTCAGCCAT 59.988 40.000 0.00 0.00 0.00 4.40
1614 2611 6.798427 ATTACGATACCATCTCAGCCATAT 57.202 37.500 0.00 0.00 0.00 1.78
1615 2612 6.605471 TTACGATACCATCTCAGCCATATT 57.395 37.500 0.00 0.00 0.00 1.28
1617 2614 6.605471 ACGATACCATCTCAGCCATATTTA 57.395 37.500 0.00 0.00 0.00 1.40
1627 2701 6.695429 TCTCAGCCATATTTACTGCTAGATG 58.305 40.000 0.00 0.00 31.69 2.90
1640 2714 6.851222 ACTGCTAGATGGAATTATTCGTTG 57.149 37.500 0.00 0.00 0.00 4.10
1692 2771 9.756571 AATGGGTTGTTTTAGTTGGTGTATATA 57.243 29.630 0.00 0.00 0.00 0.86
1697 2776 9.997482 GTTGTTTTAGTTGGTGTATATATGTGG 57.003 33.333 0.00 0.00 0.00 4.17
1708 2792 6.313905 GGTGTATATATGTGGCTTATGTGAGC 59.686 42.308 0.00 0.00 41.96 4.26
1724 2809 0.318762 GAGCGGACTCTGTTCTGGTT 59.681 55.000 0.00 0.00 40.03 3.67
1740 2825 5.261209 TCTGGTTTGGATTGTTTTGACAG 57.739 39.130 0.00 0.00 0.00 3.51
1787 3076 1.522668 TTGGCTGAATTCACTGTCGG 58.477 50.000 3.38 0.00 0.00 4.79
1814 3109 5.703130 AGTAAGCAAACCTTAGCTCTTTCTG 59.297 40.000 0.00 0.00 40.90 3.02
1834 3129 5.668471 TCTGATGAACTCATGATCCTTGTC 58.332 41.667 0.00 0.00 36.57 3.18
1835 3130 5.188359 TCTGATGAACTCATGATCCTTGTCA 59.812 40.000 0.00 0.00 36.57 3.58
1979 3398 3.782046 TCATAGAGCACTTTTACGGAGC 58.218 45.455 0.00 0.00 0.00 4.70
1998 3417 2.103601 AGCCTAAATTTGATGCCATGCC 59.896 45.455 0.00 0.00 0.00 4.40
2021 3440 5.945784 CCTGTAGGAATCACAAATTCTCCAA 59.054 40.000 0.00 0.00 37.39 3.53
2077 3504 6.099341 ACAACGTCTTTTGCTTCTGAATTTT 58.901 32.000 0.00 0.00 0.00 1.82
2094 3521 8.677300 TCTGAATTTTGTATGGAGTCTAAATGC 58.323 33.333 0.00 0.00 0.00 3.56
2097 3524 6.417191 TTTTGTATGGAGTCTAAATGCGAC 57.583 37.500 0.00 0.00 0.00 5.19
2147 3574 2.224867 ACAAAGGACCCTTCTGTGGATG 60.225 50.000 1.22 0.00 34.84 3.51
2164 3591 2.639065 GATGCTTTCCGGATGGTTACA 58.361 47.619 4.15 0.00 36.30 2.41
2194 3621 2.867647 GCTCAAGCATTTTGGTGTTCCC 60.868 50.000 0.00 0.00 41.59 3.97
2345 3773 3.431912 TCGTGATTTCTGTTGACATTCCG 59.568 43.478 0.00 0.00 0.00 4.30
2430 3858 4.623932 AAGAGGTGTAGCATTCTCAACA 57.376 40.909 0.00 0.00 0.00 3.33
2452 3880 8.896744 CAACAAATGTATCTCCACAGATTGTAT 58.103 33.333 9.30 1.66 39.51 2.29
2562 4011 4.642429 ACGTTTCCAGCTTGAAGTAGAAT 58.358 39.130 0.00 0.00 0.00 2.40
2588 4037 9.936759 TCTGTTGAATATTATTAGTGACACACA 57.063 29.630 8.59 0.00 36.74 3.72
2604 4053 3.257393 CACACACTGCTGTTATCTCCTC 58.743 50.000 0.00 0.00 0.00 3.71
2618 4067 3.292492 TCTCCTCGTGTCCTGCTATTA 57.708 47.619 0.00 0.00 0.00 0.98
2697 4146 1.227943 TGAGACCACAACAGGCTGC 60.228 57.895 15.89 0.00 0.00 5.25
2752 4201 6.071784 TCCCAATGTTGATGAAATGAGTGAAG 60.072 38.462 0.00 0.00 0.00 3.02
2890 4340 8.624776 GGTATCTCATTCCAGTTTATTCCTTTG 58.375 37.037 0.00 0.00 0.00 2.77
2927 4377 4.037208 CAGGCTGGTGGCAGATATTTTTAG 59.963 45.833 6.61 0.00 44.01 1.85
2928 4378 3.954258 GGCTGGTGGCAGATATTTTTAGT 59.046 43.478 0.00 0.00 44.01 2.24
2929 4379 4.402474 GGCTGGTGGCAGATATTTTTAGTT 59.598 41.667 0.00 0.00 44.01 2.24
2930 4380 5.105351 GGCTGGTGGCAGATATTTTTAGTTT 60.105 40.000 0.00 0.00 44.01 2.66
2931 4381 6.398095 GCTGGTGGCAGATATTTTTAGTTTT 58.602 36.000 0.00 0.00 41.35 2.43
2932 4382 6.873605 GCTGGTGGCAGATATTTTTAGTTTTT 59.126 34.615 0.00 0.00 41.35 1.94
3144 4894 2.145397 GGGGGAATCCTTTCTTCCAC 57.855 55.000 0.00 0.29 44.11 4.02
3150 4900 5.126779 GGGAATCCTTTCTTCCACTGTATC 58.873 45.833 0.00 0.00 43.34 2.24
3262 5015 6.267471 TGTTTTATCCAAGTTCTTCTGCCAAT 59.733 34.615 0.00 0.00 0.00 3.16
3326 5091 1.212935 TGCCTTTCCTTCTATGGCTCC 59.787 52.381 0.00 0.00 43.57 4.70
3451 5229 2.260434 GTTCGCGTGGGACAGCTA 59.740 61.111 5.77 0.00 41.80 3.32
3484 5262 6.292381 GCGCTATAGAATCACTTCGAAACATT 60.292 38.462 3.21 0.00 36.45 2.71
3520 5298 4.025040 TGTCAAGTTCATCATCAAGCCT 57.975 40.909 0.00 0.00 0.00 4.58
3596 5374 6.857777 ATCTTGCTCGGAAGATTTCATAAG 57.142 37.500 7.71 0.00 39.23 1.73
3647 5425 3.426560 GGAAAACAGTGTTTTCGAACCGT 60.427 43.478 36.92 17.06 38.82 4.83
3652 5430 3.683822 ACAGTGTTTTCGAACCGTAACAA 59.316 39.130 13.22 0.00 35.66 2.83
3653 5431 4.333372 ACAGTGTTTTCGAACCGTAACAAT 59.667 37.500 13.22 10.30 35.66 2.71
3663 5442 7.894376 TCGAACCGTAACAATAGAATTTTCT 57.106 32.000 0.00 0.00 41.24 2.52
3680 5459 6.588348 ATTTTCTAGTTTTGTTGCAAGTGC 57.412 33.333 0.00 0.00 42.50 4.40
3696 5476 3.138205 AGTGCGTCGTAGATCTTCTTG 57.862 47.619 0.00 0.00 40.67 3.02
3698 5478 1.201414 TGCGTCGTAGATCTTCTTGCA 59.799 47.619 0.00 3.30 40.67 4.08
3765 5545 7.630082 TGCCTGATCATATTATAAAGTACCCC 58.370 38.462 0.00 0.00 0.00 4.95
3789 5570 8.696374 CCCCATTGTACATCGTAGATCTAATAT 58.304 37.037 3.40 0.00 45.12 1.28
3831 5613 3.299503 AGAAAACATGGGTGTGAGCTTT 58.700 40.909 0.00 0.00 38.92 3.51
3832 5614 3.706086 AGAAAACATGGGTGTGAGCTTTT 59.294 39.130 0.00 0.00 38.92 2.27
3885 5669 1.785768 TCAGCATGCACACATTTTGC 58.214 45.000 21.98 0.00 40.63 3.68
3886 5670 0.793861 CAGCATGCACACATTTTGCC 59.206 50.000 21.98 0.00 39.39 4.52
3887 5671 0.320946 AGCATGCACACATTTTGCCC 60.321 50.000 21.98 0.00 39.39 5.36
3909 5722 3.930336 TGAACATCTAGCAACCTGTGAG 58.070 45.455 0.00 0.00 0.00 3.51
3927 5740 0.249489 AGTACGAATCGAGCATGCCC 60.249 55.000 15.66 0.00 0.00 5.36
3934 5747 2.370281 ATCGAGCATGCCCTTATACG 57.630 50.000 15.66 9.14 0.00 3.06
3946 5760 3.500982 CCCTTATACGTCGTGTCGAAAA 58.499 45.455 8.47 0.00 37.72 2.29
3952 5766 2.644078 ACGTCGTGTCGAAAAGTCTAC 58.356 47.619 0.00 0.00 37.72 2.59
3955 5769 4.080393 CGTCGTGTCGAAAAGTCTACTAG 58.920 47.826 0.00 0.00 37.72 2.57
4057 6184 7.564793 TGCTCACCTAACACATACTATTTCAT 58.435 34.615 0.00 0.00 0.00 2.57
4058 6185 8.700973 TGCTCACCTAACACATACTATTTCATA 58.299 33.333 0.00 0.00 0.00 2.15
4059 6186 8.979574 GCTCACCTAACACATACTATTTCATAC 58.020 37.037 0.00 0.00 0.00 2.39
4062 6189 9.477484 CACCTAACACATACTATTTCATACTCC 57.523 37.037 0.00 0.00 0.00 3.85
4063 6190 8.648693 ACCTAACACATACTATTTCATACTCCC 58.351 37.037 0.00 0.00 0.00 4.30
4064 6191 8.871125 CCTAACACATACTATTTCATACTCCCT 58.129 37.037 0.00 0.00 0.00 4.20
4065 6192 9.915629 CTAACACATACTATTTCATACTCCCTC 57.084 37.037 0.00 0.00 0.00 4.30
4066 6193 7.304497 ACACATACTATTTCATACTCCCTCC 57.696 40.000 0.00 0.00 0.00 4.30
4067 6194 6.015350 ACACATACTATTTCATACTCCCTCCG 60.015 42.308 0.00 0.00 0.00 4.63
4068 6195 6.015350 CACATACTATTTCATACTCCCTCCGT 60.015 42.308 0.00 0.00 0.00 4.69
4069 6196 6.553852 ACATACTATTTCATACTCCCTCCGTT 59.446 38.462 0.00 0.00 0.00 4.44
4070 6197 5.532664 ACTATTTCATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
4071 6198 2.953466 TTTCATACTCCCTCCGTTCG 57.047 50.000 0.00 0.00 0.00 3.95
4072 6199 1.108776 TTCATACTCCCTCCGTTCGG 58.891 55.000 4.74 4.74 0.00 4.30
4073 6200 0.256752 TCATACTCCCTCCGTTCGGA 59.743 55.000 13.34 13.34 0.00 4.55
4074 6201 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
4075 6202 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
4076 6203 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
4077 6204 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4078 6205 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4079 6206 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4080 6207 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4081 6208 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4082 6209 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4083 6210 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4084 6211 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4085 6212 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4086 6213 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
4087 6214 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
4088 6215 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
4089 6216 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
4090 6217 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
4091 6218 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
4092 6219 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
4093 6220 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
4094 6221 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
4095 6222 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
4096 6223 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
4097 6224 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
4098 6225 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
4099 6226 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
4100 6227 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
4101 6228 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
4102 6229 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
4103 6230 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
4104 6231 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
4105 6232 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
4106 6233 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
4107 6234 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
4108 6235 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
4109 6236 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
4110 6237 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
4134 6261 8.937634 TTTTAGTTCTAGATACGTCCATTTCC 57.062 34.615 0.00 0.00 0.00 3.13
4135 6262 5.184340 AGTTCTAGATACGTCCATTTCCG 57.816 43.478 0.00 0.00 0.00 4.30
4136 6263 4.885907 AGTTCTAGATACGTCCATTTCCGA 59.114 41.667 0.00 0.00 0.00 4.55
4137 6264 5.008811 AGTTCTAGATACGTCCATTTCCGAG 59.991 44.000 0.00 0.00 0.00 4.63
4138 6265 4.711399 TCTAGATACGTCCATTTCCGAGA 58.289 43.478 0.00 0.00 0.00 4.04
4139 6266 3.712091 AGATACGTCCATTTCCGAGAC 57.288 47.619 0.00 0.00 0.00 3.36
4140 6267 3.021695 AGATACGTCCATTTCCGAGACA 58.978 45.455 0.00 0.00 0.00 3.41
4141 6268 3.446161 AGATACGTCCATTTCCGAGACAA 59.554 43.478 0.00 0.00 0.00 3.18
4142 6269 2.080286 ACGTCCATTTCCGAGACAAG 57.920 50.000 0.00 0.00 0.00 3.16
4143 6270 1.343465 ACGTCCATTTCCGAGACAAGT 59.657 47.619 0.00 0.00 0.00 3.16
4144 6271 2.559668 ACGTCCATTTCCGAGACAAGTA 59.440 45.455 0.00 0.00 0.00 2.24
4145 6272 3.006110 ACGTCCATTTCCGAGACAAGTAA 59.994 43.478 0.00 0.00 0.00 2.24
4146 6273 4.181578 CGTCCATTTCCGAGACAAGTAAT 58.818 43.478 0.00 0.00 0.00 1.89
4147 6274 4.630069 CGTCCATTTCCGAGACAAGTAATT 59.370 41.667 0.00 0.00 0.00 1.40
4148 6275 5.220416 CGTCCATTTCCGAGACAAGTAATTC 60.220 44.000 0.00 0.00 0.00 2.17
4149 6276 5.064834 GTCCATTTCCGAGACAAGTAATTCC 59.935 44.000 0.00 0.00 0.00 3.01
4150 6277 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4151 6278 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4152 6279 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4153 6280 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4154 6281 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
4155 6282 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
4156 6283 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
4157 6284 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4158 6285 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4159 6286 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4160 6287 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4161 6288 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4218 6351 0.099259 CACACACACACAGGCACAAG 59.901 55.000 0.00 0.00 0.00 3.16
4241 6374 7.898470 AGAATATCTAGTCTTCTCTCCCCTA 57.102 40.000 0.00 0.00 0.00 3.53
4382 6515 4.159321 GTGAACATCCAGATCAGAGACAGA 59.841 45.833 0.00 0.00 28.79 3.41
4397 6530 0.764890 ACAGAACCCAGCTGCAGTTA 59.235 50.000 16.64 0.00 36.86 2.24
4481 6617 2.344500 CCGGGGTAGTTGTTCGCA 59.656 61.111 0.00 0.00 0.00 5.10
4499 6635 3.665675 ATTCAGCACCGTCGAGCCC 62.666 63.158 0.00 0.00 0.00 5.19
4662 6804 3.495377 GCATGATCAGCTTAGCAGAAGAG 59.505 47.826 7.07 0.00 0.00 2.85
4735 6910 1.903183 AGAGACTTACCCTGAACCTGC 59.097 52.381 0.00 0.00 0.00 4.85
4798 6973 3.118992 AGCAGCTCGTCAGTGATAATCAA 60.119 43.478 0.00 0.00 0.00 2.57
4800 6975 4.260132 GCAGCTCGTCAGTGATAATCAAAG 60.260 45.833 0.00 0.00 0.00 2.77
4959 7140 1.295423 GTTGAAGGCGTAGGAGGCA 59.705 57.895 0.00 0.00 39.37 4.75
5425 7606 3.961414 GCGGGAGGTTGGGGTTGA 61.961 66.667 0.00 0.00 0.00 3.18
5658 7839 2.556459 CGACGCTCCATCCCGATCT 61.556 63.158 0.00 0.00 0.00 2.75
5661 7842 2.031768 GCTCCATCCCGATCTGCC 59.968 66.667 0.00 0.00 0.00 4.85
5662 7843 2.811514 GCTCCATCCCGATCTGCCA 61.812 63.158 0.00 0.00 0.00 4.92
5735 7916 3.944015 GAGAGCAGGAGCATACACAAAAT 59.056 43.478 0.00 0.00 45.49 1.82
5839 8030 0.908198 ATGCGAGGAGAAAGGAGCTT 59.092 50.000 0.00 0.00 0.00 3.74
5933 8126 2.693250 AAAAAGGCGGCAAAGCGGAC 62.693 55.000 13.08 0.00 37.15 4.79
5947 8140 1.067354 AGCGGACCGTAATTCGTTTCT 60.067 47.619 16.73 0.00 37.94 2.52
6008 8201 5.587844 GCATGATGCTCCTTTTCTCTTTCTA 59.412 40.000 10.72 0.00 40.96 2.10
6014 8207 5.765182 TGCTCCTTTTCTCTTTCTACTTTGG 59.235 40.000 0.00 0.00 0.00 3.28
6021 8214 4.307432 TCTCTTTCTACTTTGGAACAGCG 58.693 43.478 0.00 0.00 42.39 5.18
6024 8217 4.510340 TCTTTCTACTTTGGAACAGCGTTC 59.490 41.667 11.42 11.42 42.39 3.95
6025 8218 2.400399 TCTACTTTGGAACAGCGTTCG 58.600 47.619 12.88 4.72 42.39 3.95
6039 8232 5.997385 ACAGCGTTCGAATTTTCAAATACT 58.003 33.333 0.00 0.00 0.00 2.12
6043 8236 7.532546 CAGCGTTCGAATTTTCAAATACTTGTA 59.467 33.333 0.00 0.00 33.94 2.41
6051 8244 9.353999 GAATTTTCAAATACTTGTACACATCCC 57.646 33.333 0.00 0.00 33.94 3.85
6054 8247 6.877668 TCAAATACTTGTACACATCCCCTA 57.122 37.500 0.00 0.00 33.94 3.53
6099 8301 4.260985 TGTACCTGGTGCTGAATAACATG 58.739 43.478 15.99 0.00 0.00 3.21
6100 8302 3.719268 ACCTGGTGCTGAATAACATGA 57.281 42.857 0.00 0.00 0.00 3.07
6101 8303 4.032960 ACCTGGTGCTGAATAACATGAA 57.967 40.909 0.00 0.00 0.00 2.57
6102 8304 4.406456 ACCTGGTGCTGAATAACATGAAA 58.594 39.130 0.00 0.00 0.00 2.69
6103 8305 4.460382 ACCTGGTGCTGAATAACATGAAAG 59.540 41.667 0.00 0.00 0.00 2.62
6104 8306 4.460382 CCTGGTGCTGAATAACATGAAAGT 59.540 41.667 0.00 0.00 0.00 2.66
6105 8307 5.375417 TGGTGCTGAATAACATGAAAGTG 57.625 39.130 0.00 0.00 0.00 3.16
6138 8340 8.724229 TCAATGTTATCTTGTCACTTTGATCAG 58.276 33.333 0.00 0.00 32.55 2.90
6143 8345 4.887748 TCTTGTCACTTTGATCAGTCTCC 58.112 43.478 0.00 0.00 0.00 3.71
6183 8385 2.842208 CAAAAGAGTTTGTGCCGACA 57.158 45.000 0.00 0.00 39.49 4.35
6217 8422 7.603297 AATACGTCGAAAAGAAAAATGTGTG 57.397 32.000 0.00 0.00 0.00 3.82
6218 8423 3.789224 ACGTCGAAAAGAAAAATGTGTGC 59.211 39.130 0.00 0.00 0.00 4.57
6278 8515 7.147846 GCATCCCTATTTTCATCAGGAGAAAAA 60.148 37.037 5.35 3.70 45.02 1.94
6381 8618 2.092968 AGCAGACAGTCACACAAAAGGA 60.093 45.455 2.66 0.00 0.00 3.36
6382 8619 2.289002 GCAGACAGTCACACAAAAGGAG 59.711 50.000 2.66 0.00 0.00 3.69
6384 8621 4.384056 CAGACAGTCACACAAAAGGAGAT 58.616 43.478 2.66 0.00 0.00 2.75
6400 8637 2.222911 GGAGATAATGCTTTGCTCTCGC 59.777 50.000 14.86 8.58 34.50 5.03
6403 8640 2.042686 TAATGCTTTGCTCTCGCCAT 57.957 45.000 0.00 0.00 34.43 4.40
6516 8753 2.265683 CTGATGATCACTGTGTGTCCG 58.734 52.381 7.79 0.00 34.79 4.79
6522 8759 0.179121 TCACTGTGTGTCCGTGTCAC 60.179 55.000 7.79 0.00 34.79 3.67
6527 8764 1.138069 TGTGTGTCCGTGTCACTCATT 59.862 47.619 0.65 0.00 35.41 2.57
6543 8780 6.151648 GTCACTCATTCTCAATCCAATCCAAA 59.848 38.462 0.00 0.00 0.00 3.28
6544 8781 6.893554 TCACTCATTCTCAATCCAATCCAAAT 59.106 34.615 0.00 0.00 0.00 2.32
6545 8782 6.978659 CACTCATTCTCAATCCAATCCAAATG 59.021 38.462 0.00 0.00 0.00 2.32
6546 8783 6.097839 ACTCATTCTCAATCCAATCCAAATGG 59.902 38.462 0.00 0.00 39.41 3.16
6558 8795 3.423539 TCCAAATGGACAGAGACTTGG 57.576 47.619 0.00 0.00 39.78 3.61
6559 8796 2.711009 TCCAAATGGACAGAGACTTGGT 59.289 45.455 0.00 0.00 39.78 3.67
6560 8797 3.907474 TCCAAATGGACAGAGACTTGGTA 59.093 43.478 0.00 0.00 39.78 3.25
6561 8798 4.003648 CCAAATGGACAGAGACTTGGTAC 58.996 47.826 0.00 0.00 37.39 3.34
6562 8799 4.504864 CCAAATGGACAGAGACTTGGTACA 60.505 45.833 0.00 0.00 37.39 2.90
6563 8800 3.963428 ATGGACAGAGACTTGGTACAC 57.037 47.619 0.00 0.00 39.29 2.90
6564 8801 2.958818 TGGACAGAGACTTGGTACACT 58.041 47.619 0.00 0.00 39.29 3.55
6565 8802 2.628178 TGGACAGAGACTTGGTACACTG 59.372 50.000 0.00 0.00 39.29 3.66
6577 8814 1.512926 GTACACTGGCTGTTCTGGTG 58.487 55.000 0.00 0.00 33.91 4.17
6583 8820 1.898574 GGCTGTTCTGGTGGTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
6593 8830 1.898574 GTGGTGGTGGACTTGGCTG 60.899 63.158 0.00 0.00 0.00 4.85
6610 8847 5.695851 TGGCTGTGAAGAAGAAGAAATTC 57.304 39.130 0.00 0.00 0.00 2.17
6692 8929 2.889617 CCATGTGCATGCACCAGG 59.110 61.111 40.01 35.41 45.63 4.45
6757 8998 3.489355 TGGAATCACTTTGTGTCAGCAT 58.511 40.909 0.00 0.00 34.79 3.79
6758 8999 3.253921 TGGAATCACTTTGTGTCAGCATG 59.746 43.478 0.00 0.00 34.79 4.06
6759 9000 3.240069 GAATCACTTTGTGTCAGCATGC 58.760 45.455 10.51 10.51 34.79 4.06
6760 9001 0.587768 TCACTTTGTGTCAGCATGCG 59.412 50.000 13.01 7.64 34.79 4.73
6761 9002 0.308684 CACTTTGTGTCAGCATGCGT 59.691 50.000 13.01 0.00 34.76 5.24
6762 9003 0.308684 ACTTTGTGTCAGCATGCGTG 59.691 50.000 13.01 11.17 34.76 5.34
6763 9004 0.308684 CTTTGTGTCAGCATGCGTGT 59.691 50.000 13.01 0.00 34.76 4.49
6764 9005 0.737804 TTTGTGTCAGCATGCGTGTT 59.262 45.000 13.01 0.00 34.76 3.32
6803 9044 1.682257 GCCAGAGAGGGTTCTTGCT 59.318 57.895 0.00 0.00 38.09 3.91
6842 9083 2.621000 CGCGGCGAGCTATTTGTC 59.379 61.111 19.16 0.00 45.59 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 82 2.838202 GGATGAGTAGACCCAACTGGAA 59.162 50.000 0.00 0.00 37.39 3.53
79 83 2.225522 TGGATGAGTAGACCCAACTGGA 60.226 50.000 0.00 0.00 37.39 3.86
80 84 2.093447 GTGGATGAGTAGACCCAACTGG 60.093 54.545 0.00 0.00 41.37 4.00
81 85 2.834549 AGTGGATGAGTAGACCCAACTG 59.165 50.000 0.00 0.00 0.00 3.16
82 86 3.100671 GAGTGGATGAGTAGACCCAACT 58.899 50.000 0.00 0.00 0.00 3.16
83 87 2.168728 GGAGTGGATGAGTAGACCCAAC 59.831 54.545 0.00 0.00 0.00 3.77
84 88 2.467880 GGAGTGGATGAGTAGACCCAA 58.532 52.381 0.00 0.00 0.00 4.12
110 114 2.037136 GCAGTGCAGTGCCCAGTAG 61.037 63.158 32.16 0.90 37.49 2.57
111 115 2.032528 GCAGTGCAGTGCCCAGTA 59.967 61.111 32.16 0.00 37.49 2.74
112 116 3.502621 ATGCAGTGCAGTGCCCAGT 62.503 57.895 36.86 20.80 43.65 4.00
113 117 2.675423 ATGCAGTGCAGTGCCCAG 60.675 61.111 36.86 7.73 43.65 4.45
114 118 2.986979 CATGCAGTGCAGTGCCCA 60.987 61.111 36.86 23.72 43.65 5.36
203 207 4.102524 TCCCATAACCATCACATAGGTGTC 59.897 45.833 7.49 0.00 45.45 3.67
207 211 4.222810 TCGATCCCATAACCATCACATAGG 59.777 45.833 0.00 0.00 0.00 2.57
229 235 1.146930 TCCGCATTGGAGATGCCTC 59.853 57.895 5.51 0.00 43.74 4.70
326 337 0.110486 GTTGAGGGGCAAGGACAAGA 59.890 55.000 0.00 0.00 37.12 3.02
337 348 1.299976 GTGTGCCTAGGTTGAGGGG 59.700 63.158 11.31 0.00 37.06 4.79
364 375 3.842923 CATCGGAGGGCTCGCACT 61.843 66.667 0.00 0.00 0.00 4.40
384 395 0.504384 GCGACGATGATGTTGATCCG 59.496 55.000 0.00 0.00 0.00 4.18
419 430 1.501741 CATTCCGCCAAGACCGTTG 59.498 57.895 0.00 0.00 0.00 4.10
457 468 1.208535 ACGGTTATGAGCCCATTCGAA 59.791 47.619 0.00 0.00 34.31 3.71
459 470 0.937304 CACGGTTATGAGCCCATTCG 59.063 55.000 0.00 0.00 34.31 3.34
460 471 1.308998 CCACGGTTATGAGCCCATTC 58.691 55.000 0.00 0.00 34.31 2.67
461 472 0.751643 GCCACGGTTATGAGCCCATT 60.752 55.000 0.00 0.00 34.31 3.16
463 474 2.270850 GCCACGGTTATGAGCCCA 59.729 61.111 0.00 0.00 0.00 5.36
464 475 2.516225 GGCCACGGTTATGAGCCC 60.516 66.667 0.00 0.00 37.66 5.19
465 476 2.895372 CGGCCACGGTTATGAGCC 60.895 66.667 2.24 0.00 40.33 4.70
490 1168 2.436646 GGAGTCGTGGTGGCCATG 60.437 66.667 9.72 0.00 41.56 3.66
499 1177 3.914312 ACTACTTGTTCATGGAGTCGTG 58.086 45.455 0.00 0.00 0.00 4.35
500 1178 4.602340 AACTACTTGTTCATGGAGTCGT 57.398 40.909 4.45 0.00 32.63 4.34
539 1217 2.202837 GCCACCGTCCGTCATACC 60.203 66.667 0.00 0.00 0.00 2.73
543 1221 3.220999 CTTCAGCCACCGTCCGTCA 62.221 63.158 0.00 0.00 0.00 4.35
548 1226 0.951040 CTTCACCTTCAGCCACCGTC 60.951 60.000 0.00 0.00 0.00 4.79
550 1228 1.672356 CCTTCACCTTCAGCCACCG 60.672 63.158 0.00 0.00 0.00 4.94
557 1235 0.321564 CACCATCGCCTTCACCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
559 1237 1.002134 CCACCATCGCCTTCACCTT 60.002 57.895 0.00 0.00 0.00 3.50
563 1241 4.776322 CGGCCACCATCGCCTTCA 62.776 66.667 2.24 0.00 44.73 3.02
570 1248 0.679640 TTCACAATCCGGCCACCATC 60.680 55.000 2.24 0.00 0.00 3.51
572 1250 0.251564 ATTTCACAATCCGGCCACCA 60.252 50.000 2.24 0.00 0.00 4.17
573 1251 0.894835 AATTTCACAATCCGGCCACC 59.105 50.000 2.24 0.00 0.00 4.61
576 1254 0.801836 CGCAATTTCACAATCCGGCC 60.802 55.000 0.00 0.00 0.00 6.13
577 1255 0.801836 CCGCAATTTCACAATCCGGC 60.802 55.000 0.00 0.00 0.00 6.13
584 1262 1.969064 CGGTCCCCGCAATTTCACA 60.969 57.895 0.00 0.00 41.17 3.58
585 1263 2.874751 CGGTCCCCGCAATTTCAC 59.125 61.111 0.00 0.00 41.17 3.18
599 1277 2.116556 AAAAACCCATCCGGCGGT 59.883 55.556 27.32 10.72 33.26 5.68
601 1279 1.319614 ATCCAAAAACCCATCCGGCG 61.320 55.000 0.00 0.00 33.26 6.46
602 1280 0.175531 CATCCAAAAACCCATCCGGC 59.824 55.000 0.00 0.00 33.26 6.13
604 1282 1.846007 TCCATCCAAAAACCCATCCG 58.154 50.000 0.00 0.00 0.00 4.18
606 1284 3.699038 TCGAATCCATCCAAAAACCCATC 59.301 43.478 0.00 0.00 0.00 3.51
607 1285 3.701040 CTCGAATCCATCCAAAAACCCAT 59.299 43.478 0.00 0.00 0.00 4.00
608 1286 3.088532 CTCGAATCCATCCAAAAACCCA 58.911 45.455 0.00 0.00 0.00 4.51
609 1287 2.427095 CCTCGAATCCATCCAAAAACCC 59.573 50.000 0.00 0.00 0.00 4.11
610 1288 2.159240 GCCTCGAATCCATCCAAAAACC 60.159 50.000 0.00 0.00 0.00 3.27
612 1290 2.801483 TGCCTCGAATCCATCCAAAAA 58.199 42.857 0.00 0.00 0.00 1.94
613 1291 2.505650 TGCCTCGAATCCATCCAAAA 57.494 45.000 0.00 0.00 0.00 2.44
626 1304 2.598632 GCCGAATTCCGATGCCTCG 61.599 63.158 4.21 4.21 44.62 4.63
627 1305 2.598632 CGCCGAATTCCGATGCCTC 61.599 63.158 0.00 0.00 41.76 4.70
628 1306 2.588877 CGCCGAATTCCGATGCCT 60.589 61.111 0.00 0.00 41.76 4.75
629 1307 2.895372 ACGCCGAATTCCGATGCC 60.895 61.111 10.51 0.00 41.76 4.40
630 1308 2.324477 CACGCCGAATTCCGATGC 59.676 61.111 10.51 3.12 41.76 3.91
631 1309 3.014036 CCACGCCGAATTCCGATG 58.986 61.111 10.51 5.73 41.76 3.84
632 1310 2.895372 GCCACGCCGAATTCCGAT 60.895 61.111 10.51 0.00 41.76 4.18
642 1320 3.423154 CCGAAAGTCTGCCACGCC 61.423 66.667 0.00 0.00 0.00 5.68
643 1321 2.357034 TCCGAAAGTCTGCCACGC 60.357 61.111 0.00 0.00 0.00 5.34
645 1323 1.671379 GGGTCCGAAAGTCTGCCAC 60.671 63.158 0.00 0.00 0.00 5.01
664 1342 3.622060 ATTCCACAAGTCGGGGCGG 62.622 63.158 0.00 0.00 0.00 6.13
669 1347 1.463444 GTCCGAAATTCCACAAGTCGG 59.537 52.381 6.20 6.20 40.22 4.79
701 1379 1.133025 GGATCACCAAATTGAGCCGTG 59.867 52.381 0.00 0.00 42.01 4.94
714 1394 1.439679 GGTCTTCAACACGGATCACC 58.560 55.000 0.00 0.00 0.00 4.02
721 1401 2.350498 ACACTTTTCGGTCTTCAACACG 59.650 45.455 0.00 0.00 0.00 4.49
725 1405 3.554324 CGAGAACACTTTTCGGTCTTCAA 59.446 43.478 0.00 0.00 0.00 2.69
728 1408 3.121544 GTCGAGAACACTTTTCGGTCTT 58.878 45.455 0.00 0.00 35.21 3.01
734 1414 6.128634 ACCGATAAATGTCGAGAACACTTTTC 60.129 38.462 0.88 0.00 44.06 2.29
753 1640 2.007608 CAGAGAGACGTGACACCGATA 58.992 52.381 0.00 0.00 0.00 2.92
834 1733 4.152647 TGCTCGGTGGTCTAGATCAATAT 58.847 43.478 7.42 0.00 0.00 1.28
838 1737 1.683385 CATGCTCGGTGGTCTAGATCA 59.317 52.381 0.14 0.14 0.00 2.92
851 1750 1.154205 CCCGCTTAGAACCATGCTCG 61.154 60.000 0.00 0.00 0.00 5.03
853 1752 1.452108 GCCCGCTTAGAACCATGCT 60.452 57.895 0.00 0.00 0.00 3.79
879 1778 3.710722 CAAGTGAGCCGGGCCTCT 61.711 66.667 17.02 10.52 33.02 3.69
888 1787 3.291611 CCCAATGGGCAAGTGAGC 58.708 61.111 4.89 0.00 35.35 4.26
966 1866 2.310945 GGGGAGGGCTTACTAGGTTTTT 59.689 50.000 0.00 0.00 0.00 1.94
967 1867 1.921049 GGGGAGGGCTTACTAGGTTTT 59.079 52.381 0.00 0.00 0.00 2.43
968 1868 1.082365 AGGGGAGGGCTTACTAGGTTT 59.918 52.381 0.00 0.00 0.00 3.27
969 1869 0.723289 AGGGGAGGGCTTACTAGGTT 59.277 55.000 0.00 0.00 0.00 3.50
970 1870 0.031010 CAGGGGAGGGCTTACTAGGT 60.031 60.000 0.00 0.00 0.00 3.08
1083 2011 2.364448 AGCCTCCGGGACTTCTCC 60.364 66.667 0.00 0.00 35.50 3.71
1320 2254 2.100991 CCAGCGCCAAATCGAAGC 59.899 61.111 2.29 0.00 0.00 3.86
1504 2448 1.792949 CGTTCTTCACCTTTGAGACGG 59.207 52.381 0.00 0.00 33.91 4.79
1581 2577 8.909923 TGAGATGGTATCGTAATTCAAGAGTTA 58.090 33.333 0.00 0.00 0.00 2.24
1588 2584 4.343814 TGGCTGAGATGGTATCGTAATTCA 59.656 41.667 0.00 0.00 0.00 2.57
1601 2598 6.695429 TCTAGCAGTAAATATGGCTGAGATG 58.305 40.000 0.00 0.00 37.17 2.90
1614 2611 8.826710 CAACGAATAATTCCATCTAGCAGTAAA 58.173 33.333 0.00 0.00 0.00 2.01
1615 2612 7.985184 ACAACGAATAATTCCATCTAGCAGTAA 59.015 33.333 0.00 0.00 0.00 2.24
1617 2614 6.349300 ACAACGAATAATTCCATCTAGCAGT 58.651 36.000 0.00 0.00 0.00 4.40
1627 2701 5.175859 TCAGACTGGACAACGAATAATTCC 58.824 41.667 1.81 0.00 0.00 3.01
1640 2714 3.372206 CCGAACAATGAATCAGACTGGAC 59.628 47.826 1.81 0.00 0.00 4.02
1692 2771 0.541392 TCCGCTCACATAAGCCACAT 59.459 50.000 0.00 0.00 39.17 3.21
1697 2776 1.134965 ACAGAGTCCGCTCACATAAGC 60.135 52.381 0.00 0.00 44.00 3.09
1708 2792 1.070134 TCCAAACCAGAACAGAGTCCG 59.930 52.381 0.00 0.00 0.00 4.79
1724 2809 3.636300 CCACCTCTGTCAAAACAATCCAA 59.364 43.478 0.00 0.00 34.24 3.53
1740 2825 2.231716 AGCCCCAATAAAACCACCTC 57.768 50.000 0.00 0.00 0.00 3.85
1787 3076 2.347731 AGCTAAGGTTTGCTTACTCGC 58.652 47.619 0.00 0.00 35.81 5.03
1814 3109 4.574013 GGTGACAAGGATCATGAGTTCATC 59.426 45.833 0.09 0.00 33.61 2.92
1834 3129 6.539324 TCTTCATTAGCGAAAATAAACGGTG 58.461 36.000 0.00 0.00 40.31 4.94
1835 3130 6.730960 TCTTCATTAGCGAAAATAAACGGT 57.269 33.333 0.00 0.00 42.56 4.83
1979 3398 3.133362 ACAGGCATGGCATCAAATTTAGG 59.867 43.478 22.64 0.00 0.00 2.69
1998 3417 7.452880 TTTGGAGAATTTGTGATTCCTACAG 57.547 36.000 0.00 0.00 0.00 2.74
2021 3440 0.323725 AGCGATGGCCATCAACCTTT 60.324 50.000 38.08 17.72 41.24 3.11
2077 3504 3.702330 CGTCGCATTTAGACTCCATACA 58.298 45.455 0.00 0.00 36.53 2.29
2094 3521 5.907391 GTGATTCCTAAAAATAATGGCGTCG 59.093 40.000 0.00 0.00 0.00 5.12
2097 3524 8.542132 CATTTGTGATTCCTAAAAATAATGGCG 58.458 33.333 0.00 0.00 0.00 5.69
2147 3574 2.479560 GCAATGTAACCATCCGGAAAGC 60.480 50.000 9.01 0.00 35.59 3.51
2194 3621 3.672295 GAGCTCCAGCCCGTCAAGG 62.672 68.421 0.87 0.00 43.38 3.61
2345 3773 7.542130 CCTGCAAAAACACTTGATATTAGAACC 59.458 37.037 0.00 0.00 0.00 3.62
2430 3858 7.227156 GGGATACAATCTGTGGAGATACATTT 58.773 38.462 0.00 0.00 38.03 2.32
2452 3880 2.035961 GTGCAGCATAGAAGATACGGGA 59.964 50.000 0.00 0.00 0.00 5.14
2562 4011 9.936759 TGTGTGTCACTAATAATATTCAACAGA 57.063 29.630 4.27 0.00 35.11 3.41
2588 4037 2.164624 GACACGAGGAGATAACAGCAGT 59.835 50.000 0.00 0.00 0.00 4.40
2589 4038 2.480416 GGACACGAGGAGATAACAGCAG 60.480 54.545 0.00 0.00 0.00 4.24
2697 4146 3.560481 CAGTAGCATCTGCAGAAATCAGG 59.440 47.826 22.50 7.43 45.16 3.86
2890 4340 6.349363 GCCACCAGCCTGCTAAATAATATAAC 60.349 42.308 0.00 0.00 34.35 1.89
2929 4379 7.601886 CACCAATTATCAGCCACAATGTAAAAA 59.398 33.333 0.00 0.00 0.00 1.94
2930 4380 7.095910 CACCAATTATCAGCCACAATGTAAAA 58.904 34.615 0.00 0.00 0.00 1.52
2931 4381 6.210385 ACACCAATTATCAGCCACAATGTAAA 59.790 34.615 0.00 0.00 0.00 2.01
2932 4382 5.714333 ACACCAATTATCAGCCACAATGTAA 59.286 36.000 0.00 0.00 0.00 2.41
2933 4383 5.260424 ACACCAATTATCAGCCACAATGTA 58.740 37.500 0.00 0.00 0.00 2.29
2934 4384 4.088634 ACACCAATTATCAGCCACAATGT 58.911 39.130 0.00 0.00 0.00 2.71
2935 4385 4.724074 ACACCAATTATCAGCCACAATG 57.276 40.909 0.00 0.00 0.00 2.82
2952 4402 2.876550 AGAGGCGTGTAAAGAAAACACC 59.123 45.455 1.11 0.00 43.46 4.16
3024 4483 3.190327 CCATTATTGTTGCAGAACGGTCA 59.810 43.478 1.87 0.00 34.49 4.02
3105 4571 1.000359 TGCTGTGATCTCGAGGGGA 60.000 57.895 13.56 0.00 0.00 4.81
3144 4894 3.119708 GGCTGGCTTTTGAGTTGATACAG 60.120 47.826 0.00 0.00 0.00 2.74
3150 4900 1.614903 TCATGGCTGGCTTTTGAGTTG 59.385 47.619 2.00 0.00 0.00 3.16
3245 4998 4.583871 ACTAGATTGGCAGAAGAACTTGG 58.416 43.478 0.00 0.00 0.00 3.61
3262 5015 4.079253 GCCAAAATGAACCAAGGACTAGA 58.921 43.478 0.00 0.00 0.00 2.43
3326 5091 9.178427 CTTAACAGAAGAAGCAAGATTCAAAAG 57.822 33.333 0.63 0.00 0.00 2.27
3451 5229 0.249322 ATTCTATAGCGCGCGGTGTT 60.249 50.000 41.12 29.72 0.00 3.32
3520 5298 1.340211 ACCGTGTTTGAGTTTGGGTCA 60.340 47.619 0.00 0.00 0.00 4.02
3596 5374 5.609423 AGATGAGGTTCATGATAGTTCTGC 58.391 41.667 0.00 0.00 37.20 4.26
3653 5431 9.515020 CACTTGCAACAAAACTAGAAAATTCTA 57.485 29.630 0.00 3.08 38.70 2.10
3663 5442 2.537931 CGACGCACTTGCAACAAAACTA 60.538 45.455 0.00 0.00 42.21 2.24
3680 5459 2.863739 TGTGCAAGAAGATCTACGACG 58.136 47.619 0.00 0.00 0.00 5.12
3696 5476 7.308782 AGCTTACATCAAAACTACTATGTGC 57.691 36.000 0.00 0.00 34.54 4.57
3789 5570 5.077564 TCTCAGGAACAGAAGTAGTTGCTA 58.922 41.667 0.00 0.00 44.30 3.49
3831 5613 7.451255 ACCAAATACCAGAAATCTCAATGTGAA 59.549 33.333 0.00 0.00 0.00 3.18
3832 5614 6.947733 ACCAAATACCAGAAATCTCAATGTGA 59.052 34.615 0.00 0.00 0.00 3.58
3885 5669 2.026822 ACAGGTTGCTAGATGTTCAGGG 60.027 50.000 0.00 0.00 0.00 4.45
3886 5670 3.005554 CACAGGTTGCTAGATGTTCAGG 58.994 50.000 0.00 0.00 0.00 3.86
3887 5671 3.930336 TCACAGGTTGCTAGATGTTCAG 58.070 45.455 0.00 0.00 0.00 3.02
3909 5722 0.249489 AGGGCATGCTCGATTCGTAC 60.249 55.000 18.92 0.00 0.00 3.67
3927 5740 5.084722 AGACTTTTCGACACGACGTATAAG 58.915 41.667 0.00 0.00 34.89 1.73
3934 5747 4.153117 TCCTAGTAGACTTTTCGACACGAC 59.847 45.833 0.00 0.00 34.89 4.34
3946 5760 8.445361 TTTTCCATTACCTTTCCTAGTAGACT 57.555 34.615 0.00 0.00 0.00 3.24
3952 5766 8.807948 TTCATCTTTTCCATTACCTTTCCTAG 57.192 34.615 0.00 0.00 0.00 3.02
3955 5769 6.153510 AGCTTCATCTTTTCCATTACCTTTCC 59.846 38.462 0.00 0.00 0.00 3.13
4016 5836 3.622163 GTGAGCATGGAGTTCATTCTCTG 59.378 47.826 11.72 0.00 43.46 3.35
4057 6184 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4058 6185 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4059 6186 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4060 6187 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4061 6188 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4062 6189 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4063 6190 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4064 6191 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
4065 6192 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4066 6193 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
4067 6194 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
4068 6195 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
4069 6196 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
4070 6197 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
4071 6198 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
4072 6199 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
4073 6200 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
4074 6201 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
4075 6202 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
4076 6203 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
4077 6204 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
4078 6205 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
4079 6206 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
4080 6207 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
4081 6208 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
4082 6209 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
4083 6210 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
4084 6211 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
4108 6235 9.543783 GGAAATGGACGTATCTAGAACTAAAAT 57.456 33.333 0.00 0.00 0.00 1.82
4109 6236 7.703621 CGGAAATGGACGTATCTAGAACTAAAA 59.296 37.037 0.00 0.00 0.00 1.52
4110 6237 7.067372 TCGGAAATGGACGTATCTAGAACTAAA 59.933 37.037 0.00 0.00 0.00 1.85
4111 6238 6.543465 TCGGAAATGGACGTATCTAGAACTAA 59.457 38.462 0.00 0.00 0.00 2.24
4112 6239 6.057533 TCGGAAATGGACGTATCTAGAACTA 58.942 40.000 0.00 0.00 0.00 2.24
4113 6240 4.885907 TCGGAAATGGACGTATCTAGAACT 59.114 41.667 0.00 0.00 0.00 3.01
4114 6241 5.008415 TCTCGGAAATGGACGTATCTAGAAC 59.992 44.000 0.00 0.00 0.00 3.01
4115 6242 5.008415 GTCTCGGAAATGGACGTATCTAGAA 59.992 44.000 0.00 0.00 0.00 2.10
4116 6243 4.514441 GTCTCGGAAATGGACGTATCTAGA 59.486 45.833 0.00 0.00 0.00 2.43
4117 6244 4.275196 TGTCTCGGAAATGGACGTATCTAG 59.725 45.833 0.00 0.00 33.21 2.43
4118 6245 4.201657 TGTCTCGGAAATGGACGTATCTA 58.798 43.478 0.00 0.00 33.21 1.98
4119 6246 3.021695 TGTCTCGGAAATGGACGTATCT 58.978 45.455 0.00 0.00 33.21 1.98
4120 6247 3.431922 TGTCTCGGAAATGGACGTATC 57.568 47.619 0.00 0.00 33.21 2.24
4121 6248 3.194968 ACTTGTCTCGGAAATGGACGTAT 59.805 43.478 0.00 0.00 33.21 3.06
4122 6249 2.559668 ACTTGTCTCGGAAATGGACGTA 59.440 45.455 0.00 0.00 33.21 3.57
4123 6250 1.343465 ACTTGTCTCGGAAATGGACGT 59.657 47.619 0.00 0.00 33.21 4.34
4124 6251 2.080286 ACTTGTCTCGGAAATGGACG 57.920 50.000 0.00 0.00 33.21 4.79
4125 6252 5.064834 GGAATTACTTGTCTCGGAAATGGAC 59.935 44.000 0.00 0.00 0.00 4.02
4126 6253 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4127 6254 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4128 6255 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
4129 6256 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4130 6257 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4131 6258 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4132 6259 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
4133 6260 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
4134 6261 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
4135 6262 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4136 6263 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4137 6264 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4138 6265 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4139 6266 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4140 6267 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4141 6268 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4142 6269 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4143 6270 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4144 6271 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4145 6272 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
4146 6273 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
4147 6274 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
4148 6275 0.465097 TAGCTACTCCCTCCGTTCGG 60.465 60.000 4.74 4.74 0.00 4.30
4149 6276 1.606903 ATAGCTACTCCCTCCGTTCG 58.393 55.000 0.00 0.00 0.00 3.95
4150 6277 3.057386 GCTTATAGCTACTCCCTCCGTTC 60.057 52.174 0.00 0.00 38.45 3.95
4151 6278 2.892215 GCTTATAGCTACTCCCTCCGTT 59.108 50.000 0.00 0.00 38.45 4.44
4152 6279 2.158505 TGCTTATAGCTACTCCCTCCGT 60.159 50.000 0.00 0.00 42.97 4.69
4153 6280 2.515854 TGCTTATAGCTACTCCCTCCG 58.484 52.381 0.00 0.00 42.97 4.63
4154 6281 3.641906 TGTTGCTTATAGCTACTCCCTCC 59.358 47.826 12.91 0.00 45.07 4.30
4155 6282 4.939052 TGTTGCTTATAGCTACTCCCTC 57.061 45.455 12.91 0.00 45.07 4.30
4156 6283 5.604650 AGAATGTTGCTTATAGCTACTCCCT 59.395 40.000 12.91 5.79 45.07 4.20
4157 6284 5.698545 CAGAATGTTGCTTATAGCTACTCCC 59.301 44.000 12.91 4.08 45.07 4.30
4158 6285 5.178438 GCAGAATGTTGCTTATAGCTACTCC 59.822 44.000 12.91 4.35 45.07 3.85
4159 6286 6.221858 GCAGAATGTTGCTTATAGCTACTC 57.778 41.667 12.91 5.11 45.07 2.59
4184 6311 3.576550 TGTGTGTGTATTGGACTGAGCTA 59.423 43.478 0.00 0.00 0.00 3.32
4218 6351 8.333235 TCATAGGGGAGAGAAGACTAGATATTC 58.667 40.741 0.00 0.00 0.00 1.75
4382 6515 0.251341 CCCTTAACTGCAGCTGGGTT 60.251 55.000 17.12 3.29 0.00 4.11
4481 6617 2.125512 GGCTCGACGGTGCTGAAT 60.126 61.111 12.03 0.00 33.30 2.57
4499 6635 2.262915 GTCAGCAGTGGAGGGTCG 59.737 66.667 0.00 0.00 0.00 4.79
4662 6804 8.755018 CAAATCAAACAGTCAAATTCTTACACC 58.245 33.333 0.00 0.00 0.00 4.16
4735 6910 2.353889 GCTTGCATGTACCAGACATCAG 59.646 50.000 1.14 0.00 46.33 2.90
4798 6973 1.607148 GAAACTGTTAGCAACGCCCTT 59.393 47.619 0.00 0.00 0.00 3.95
4800 6975 0.948678 TGAAACTGTTAGCAACGCCC 59.051 50.000 0.00 0.00 0.00 6.13
4959 7140 2.108514 CAACACGATCCAGGCGCAT 61.109 57.895 10.83 0.00 0.00 4.73
5604 7785 1.153127 GGGTGGTGTTGTTGACGGA 60.153 57.895 0.00 0.00 0.00 4.69
5610 7791 1.006639 AGGTTCTTGGGTGGTGTTGTT 59.993 47.619 0.00 0.00 0.00 2.83
5735 7916 3.011635 GCTCCGGCTCTCAGCTTGA 62.012 63.158 0.00 0.00 41.99 3.02
6008 8201 1.658994 TTCGAACGCTGTTCCAAAGT 58.341 45.000 13.33 0.00 0.00 2.66
6014 8207 5.806089 ATTTGAAAATTCGAACGCTGTTC 57.194 34.783 0.00 10.23 33.63 3.18
6021 8214 9.440784 TGTGTACAAGTATTTGAAAATTCGAAC 57.559 29.630 0.00 0.00 37.73 3.95
6024 8217 9.061610 GGATGTGTACAAGTATTTGAAAATTCG 57.938 33.333 4.81 0.00 37.73 3.34
6025 8218 9.353999 GGGATGTGTACAAGTATTTGAAAATTC 57.646 33.333 4.81 0.00 37.73 2.17
6039 8232 2.494471 CGACAGTAGGGGATGTGTACAA 59.506 50.000 0.00 0.00 0.00 2.41
6043 8236 1.005569 TCTCGACAGTAGGGGATGTGT 59.994 52.381 0.00 0.00 0.00 3.72
6051 8244 5.630661 TTCTTCTTTCTCTCGACAGTAGG 57.369 43.478 0.00 0.00 0.00 3.18
6054 8247 5.776173 TCTTTCTTCTTTCTCTCGACAGT 57.224 39.130 0.00 0.00 0.00 3.55
6138 8340 2.029828 TCTTCTGCGACTGAAAGGAGAC 60.030 50.000 0.00 0.00 39.30 3.36
6143 8345 2.802556 GCATCTTCTGCGACTGAAAG 57.197 50.000 0.00 0.00 41.97 2.62
6199 8404 5.586339 TCATGCACACATTTTTCTTTTCGA 58.414 33.333 0.00 0.00 32.87 3.71
6218 8423 3.858247 TGTCTGAGTCAGCATTCTCATG 58.142 45.455 15.72 0.00 39.48 3.07
6232 8452 0.679002 CATTGCCACCCCTGTCTGAG 60.679 60.000 0.00 0.00 0.00 3.35
6278 8515 5.023452 TCTCACCACCTTCTACATGTATGT 58.977 41.667 5.91 2.75 44.48 2.29
6400 8637 3.627577 CGATTGGACCTGAAAACCTATGG 59.372 47.826 0.00 0.00 0.00 2.74
6403 8640 3.615592 CGTCGATTGGACCTGAAAACCTA 60.616 47.826 0.00 0.00 42.99 3.08
6516 8753 5.065731 GGATTGGATTGAGAATGAGTGACAC 59.934 44.000 0.00 0.00 0.00 3.67
6522 8759 6.322969 TCCATTTGGATTGGATTGAGAATGAG 59.677 38.462 0.00 0.00 39.78 2.90
6543 8780 3.259374 CAGTGTACCAAGTCTCTGTCCAT 59.741 47.826 0.00 0.00 0.00 3.41
6544 8781 2.628178 CAGTGTACCAAGTCTCTGTCCA 59.372 50.000 0.00 0.00 0.00 4.02
6545 8782 2.028930 CCAGTGTACCAAGTCTCTGTCC 60.029 54.545 0.00 0.00 0.00 4.02
6546 8783 2.610727 GCCAGTGTACCAAGTCTCTGTC 60.611 54.545 0.00 0.00 0.00 3.51
6548 8785 1.620819 AGCCAGTGTACCAAGTCTCTG 59.379 52.381 0.00 0.00 0.00 3.35
6549 8786 1.620819 CAGCCAGTGTACCAAGTCTCT 59.379 52.381 0.00 0.00 0.00 3.10
6550 8787 1.344763 ACAGCCAGTGTACCAAGTCTC 59.655 52.381 0.00 0.00 37.75 3.36
6551 8788 1.424638 ACAGCCAGTGTACCAAGTCT 58.575 50.000 0.00 0.00 37.75 3.24
6552 8789 2.143925 GAACAGCCAGTGTACCAAGTC 58.856 52.381 0.00 0.00 39.03 3.01
6553 8790 1.768870 AGAACAGCCAGTGTACCAAGT 59.231 47.619 0.00 0.00 39.03 3.16
6554 8791 2.146342 CAGAACAGCCAGTGTACCAAG 58.854 52.381 0.00 0.00 39.03 3.61
6556 8793 0.396435 CCAGAACAGCCAGTGTACCA 59.604 55.000 0.00 0.00 39.03 3.25
6557 8794 0.396811 ACCAGAACAGCCAGTGTACC 59.603 55.000 0.00 0.00 39.03 3.34
6558 8795 1.512926 CACCAGAACAGCCAGTGTAC 58.487 55.000 0.00 0.00 39.03 2.90
6559 8796 0.396435 CCACCAGAACAGCCAGTGTA 59.604 55.000 0.00 0.00 39.03 2.90
6560 8797 1.149174 CCACCAGAACAGCCAGTGT 59.851 57.895 0.00 0.00 43.24 3.55
6561 8798 1.149174 ACCACCAGAACAGCCAGTG 59.851 57.895 0.00 0.00 0.00 3.66
6562 8799 1.149174 CACCACCAGAACAGCCAGT 59.851 57.895 0.00 0.00 0.00 4.00
6563 8800 1.601759 CCACCACCAGAACAGCCAG 60.602 63.158 0.00 0.00 0.00 4.85
6564 8801 2.382770 ACCACCACCAGAACAGCCA 61.383 57.895 0.00 0.00 0.00 4.75
6565 8802 1.898574 CACCACCACCAGAACAGCC 60.899 63.158 0.00 0.00 0.00 4.85
6577 8814 1.898574 CACAGCCAAGTCCACCACC 60.899 63.158 0.00 0.00 0.00 4.61
6583 8820 2.550830 TCTTCTTCACAGCCAAGTCC 57.449 50.000 0.00 0.00 0.00 3.85
6593 8830 6.625873 ACACTGGAATTTCTTCTTCTTCAC 57.374 37.500 0.00 0.00 0.00 3.18
6692 8929 3.604582 CAAGAATCCACTCCTTGAGGTC 58.395 50.000 0.00 0.00 39.55 3.85
6757 8998 1.154131 GCACACACACAAACACGCA 60.154 52.632 0.00 0.00 0.00 5.24
6758 8999 0.525242 ATGCACACACACAAACACGC 60.525 50.000 0.00 0.00 0.00 5.34
6759 9000 1.063912 AGATGCACACACACAAACACG 59.936 47.619 0.00 0.00 0.00 4.49
6760 9001 2.355756 AGAGATGCACACACACAAACAC 59.644 45.455 0.00 0.00 0.00 3.32
6761 9002 2.613595 GAGAGATGCACACACACAAACA 59.386 45.455 0.00 0.00 0.00 2.83
6762 9003 2.874701 AGAGAGATGCACACACACAAAC 59.125 45.455 0.00 0.00 0.00 2.93
6763 9004 3.198409 AGAGAGATGCACACACACAAA 57.802 42.857 0.00 0.00 0.00 2.83
6764 9005 2.916702 AGAGAGATGCACACACACAA 57.083 45.000 0.00 0.00 0.00 3.33
6842 9083 2.099141 TTCCACTCTCATCTTTGGCG 57.901 50.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.