Multiple sequence alignment - TraesCS5B01G510100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G510100 chr5B 100.000 8338 0 0 1 8338 675882609 675890946 0.000000e+00 15398.0
1 TraesCS5B01G510100 chr5B 83.862 378 45 8 4638 5006 509469123 509469493 6.200000e-91 346.0
2 TraesCS5B01G510100 chr5B 86.713 286 21 4 4051 4328 605159827 605159551 1.360000e-77 302.0
3 TraesCS5B01G510100 chr5B 83.446 296 32 8 4040 4328 232730183 232730468 8.300000e-65 259.0
4 TraesCS5B01G510100 chr5B 84.305 223 28 6 1306 1522 655681452 655681673 2.360000e-50 211.0
5 TraesCS5B01G510100 chr5B 95.200 125 6 0 1185 1309 655681058 655681182 1.840000e-46 198.0
6 TraesCS5B01G510100 chr5B 91.525 118 9 1 3157 3273 675885651 675885768 2.410000e-35 161.0
7 TraesCS5B01G510100 chr5B 91.525 118 9 1 3043 3160 675885765 675885881 2.410000e-35 161.0
8 TraesCS5B01G510100 chr5B 90.291 103 7 2 5483 5585 509469597 509469696 1.890000e-26 132.0
9 TraesCS5B01G510100 chr5B 94.286 70 4 0 1306 1375 655681316 655681385 3.180000e-19 108.0
10 TraesCS5B01G510100 chr5B 83.077 65 6 3 525 584 491439285 491439221 4.000000e-03 54.7
11 TraesCS5B01G510100 chr4A 93.817 3477 137 21 1536 4977 636654065 636650632 0.000000e+00 5158.0
12 TraesCS5B01G510100 chr4A 94.914 1455 60 8 4962 6411 636648831 636647386 0.000000e+00 2265.0
13 TraesCS5B01G510100 chr4A 86.136 779 64 22 6452 7197 636647387 636646620 0.000000e+00 800.0
14 TraesCS5B01G510100 chr4A 90.672 536 29 8 1 530 636656040 636655520 0.000000e+00 693.0
15 TraesCS5B01G510100 chr4A 93.736 447 19 5 865 1311 636655086 636654649 0.000000e+00 662.0
16 TraesCS5B01G510100 chr4A 91.275 149 12 1 701 848 636655223 636655075 1.420000e-47 202.0
17 TraesCS5B01G510100 chr4A 93.023 129 8 1 8150 8277 636644846 636644718 3.970000e-43 187.0
18 TraesCS5B01G510100 chr4A 95.789 95 4 0 3066 3160 636652433 636652339 4.030000e-33 154.0
19 TraesCS5B01G510100 chr4A 91.071 56 2 3 4958 5010 636648794 636648739 1.160000e-08 73.1
20 TraesCS5B01G510100 chr5D 97.739 2167 47 2 1374 3539 535131779 535133944 0.000000e+00 3729.0
21 TraesCS5B01G510100 chr5D 95.441 1316 46 6 5139 6450 535134909 535136214 0.000000e+00 2085.0
22 TraesCS5B01G510100 chr5D 97.626 969 21 2 3942 4910 535133944 535134910 0.000000e+00 1661.0
23 TraesCS5B01G510100 chr5D 91.000 800 48 12 6452 7240 535136259 535137045 0.000000e+00 1057.0
24 TraesCS5B01G510100 chr5D 91.698 530 32 2 1 530 535130252 535130769 0.000000e+00 725.0
25 TraesCS5B01G510100 chr5D 89.127 607 31 12 715 1311 535130852 535131433 0.000000e+00 723.0
26 TraesCS5B01G510100 chr5D 91.770 243 18 2 3938 4180 127881826 127882066 3.730000e-88 337.0
27 TraesCS5B01G510100 chr5D 85.202 223 26 5 1306 1522 341436488 341436709 1.090000e-53 222.0
28 TraesCS5B01G510100 chr5D 95.868 121 5 0 1185 1305 341436094 341436214 6.600000e-46 196.0
29 TraesCS5B01G510100 chr5D 92.683 123 9 0 3038 3160 535133556 535133678 2.390000e-40 178.0
30 TraesCS5B01G510100 chr5D 89.831 118 11 1 3157 3273 535133447 535133564 5.210000e-32 150.0
31 TraesCS5B01G510100 chr5D 98.571 70 1 0 1306 1375 535131586 535131655 3.160000e-24 124.0
32 TraesCS5B01G510100 chr5D 91.954 87 6 1 5485 5571 127882607 127882692 4.090000e-23 121.0
33 TraesCS5B01G510100 chr5D 97.619 42 1 0 616 657 535130809 535130850 1.160000e-08 73.1
34 TraesCS5B01G510100 chr5D 100.000 28 0 0 525 552 213216825 213216852 1.500000e-02 52.8
35 TraesCS5B01G510100 chr7D 84.262 718 65 18 4040 4754 7729942 7730614 0.000000e+00 656.0
36 TraesCS5B01G510100 chr7D 94.340 53 3 0 7434 7486 501847898 501847950 1.930000e-11 82.4
37 TraesCS5B01G510100 chr3D 85.484 372 38 9 4640 5003 380383744 380383381 2.840000e-99 374.0
38 TraesCS5B01G510100 chr3D 86.806 288 25 7 3901 4180 380384056 380383774 8.130000e-80 309.0
39 TraesCS5B01G510100 chr3D 85.202 223 26 5 1306 1522 564093131 564093352 1.090000e-53 222.0
40 TraesCS5B01G510100 chr3D 96.694 121 4 0 1185 1305 564092737 564092857 1.420000e-47 202.0
41 TraesCS5B01G510100 chr3D 93.137 102 5 1 5483 5584 380383295 380383196 1.880000e-31 148.0
42 TraesCS5B01G510100 chr3D 94.286 70 4 0 1306 1375 564092995 564093064 3.180000e-19 108.0
43 TraesCS5B01G510100 chr3D 89.831 59 4 2 8278 8336 66404244 66404188 3.230000e-09 75.0
44 TraesCS5B01G510100 chr3D 92.105 38 3 0 517 554 8779660 8779697 4.000000e-03 54.7
45 TraesCS5B01G510100 chr3D 92.308 39 2 1 526 564 74857591 74857628 4.000000e-03 54.7
46 TraesCS5B01G510100 chr3B 84.267 375 43 9 4641 5006 545009973 545009606 1.330000e-92 351.0
47 TraesCS5B01G510100 chr3B 84.211 361 35 9 3828 4180 770095349 770095695 1.730000e-86 331.0
48 TraesCS5B01G510100 chr3B 79.245 371 37 25 4638 5003 770095725 770096060 1.090000e-53 222.0
49 TraesCS5B01G510100 chr3B 87.432 183 12 5 4822 5003 598032764 598032936 5.100000e-47 200.0
50 TraesCS5B01G510100 chr3B 89.109 101 8 2 5485 5585 598033044 598033141 1.140000e-23 122.0
51 TraesCS5B01G510100 chr3B 87.379 103 5 5 5481 5581 545009474 545009378 2.460000e-20 111.0
52 TraesCS5B01G510100 chr3B 90.000 40 4 0 525 564 198263501 198263462 1.500000e-02 52.8
53 TraesCS5B01G510100 chr1A 85.083 362 34 7 3828 4180 50705890 50706240 1.330000e-92 351.0
54 TraesCS5B01G510100 chr1A 96.000 125 5 0 1185 1309 428882259 428882383 3.950000e-48 204.0
55 TraesCS5B01G510100 chr1A 83.111 225 27 8 1306 1522 428882652 428882873 2.370000e-45 195.0
56 TraesCS5B01G510100 chr1A 86.364 154 11 4 4641 4788 50706273 50706422 8.660000e-35 159.0
57 TraesCS5B01G510100 chr1A 94.286 70 4 0 1306 1375 428882517 428882586 3.180000e-19 108.0
58 TraesCS5B01G510100 chr7B 83.978 362 47 4 3828 4180 374424001 374423642 3.730000e-88 337.0
59 TraesCS5B01G510100 chr7B 83.502 297 31 9 4040 4328 169271449 169271735 2.310000e-65 261.0
60 TraesCS5B01G510100 chr7B 88.462 156 10 4 4641 4788 374423609 374423454 1.850000e-41 182.0
61 TraesCS5B01G510100 chr7B 85.075 67 9 1 7432 7498 49236096 49236161 5.400000e-07 67.6
62 TraesCS5B01G510100 chr7B 96.970 33 1 0 527 559 598294234 598294266 1.000000e-03 56.5
63 TraesCS5B01G510100 chr4B 92.308 234 17 1 3938 4171 502994011 502994243 1.730000e-86 331.0
64 TraesCS5B01G510100 chr4B 83.446 296 32 8 4040 4328 81211306 81211021 8.300000e-65 259.0
65 TraesCS5B01G510100 chr4B 81.000 200 14 10 4808 5003 502994479 502994658 4.060000e-28 137.0
66 TraesCS5B01G510100 chr4B 90.805 87 7 1 5485 5571 502994792 502994877 1.900000e-21 115.0
67 TraesCS5B01G510100 chr6B 90.535 243 21 2 3938 4180 683645834 683646074 3.750000e-83 320.0
68 TraesCS5B01G510100 chr6B 93.333 45 3 0 6407 6451 675195024 675195068 5.400000e-07 67.6
69 TraesCS5B01G510100 chr6A 86.102 295 22 6 4042 4328 596596683 596596400 4.890000e-77 300.0
70 TraesCS5B01G510100 chr6A 90.000 40 4 0 525 564 458217877 458217838 1.500000e-02 52.8
71 TraesCS5B01G510100 chr2A 85.185 297 26 6 4040 4328 429139913 429140199 1.060000e-73 289.0
72 TraesCS5B01G510100 chr2A 79.730 370 36 22 4641 5006 618983771 618983437 1.810000e-56 231.0
73 TraesCS5B01G510100 chr2A 83.898 236 29 7 1306 1535 123336801 123336569 5.070000e-52 217.0
74 TraesCS5B01G510100 chr2A 98.347 121 2 0 1185 1305 123337195 123337075 6.560000e-51 213.0
75 TraesCS5B01G510100 chr1B 87.179 156 15 4 4638 4788 524273557 524273712 1.110000e-38 172.0
76 TraesCS5B01G510100 chr1B 92.405 79 6 0 4839 4917 524273734 524273812 6.840000e-21 113.0
77 TraesCS5B01G510100 chr6D 89.109 101 8 2 5485 5585 121625414 121625317 1.140000e-23 122.0
78 TraesCS5B01G510100 chr7A 95.714 70 3 0 4933 5002 48912087 48912156 6.840000e-21 113.0
79 TraesCS5B01G510100 chr7A 89.362 47 3 2 6406 6451 517579113 517579158 3.250000e-04 58.4
80 TraesCS5B01G510100 chr4D 91.803 61 2 2 8278 8336 281303866 281303925 1.930000e-11 82.4
81 TraesCS5B01G510100 chr4D 90.000 40 4 0 525 564 362903202 362903163 1.500000e-02 52.8
82 TraesCS5B01G510100 chr2B 97.059 34 1 0 6410 6443 800089387 800089354 3.250000e-04 58.4
83 TraesCS5B01G510100 chr3A 90.000 40 4 0 525 564 83253870 83253831 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G510100 chr5B 675882609 675890946 8337 False 15398.000000 15398 100.000000 1 8338 1 chr5B.!!$F2 8337
1 TraesCS5B01G510100 chr5B 509469123 509469696 573 False 239.000000 346 87.076500 4638 5585 2 chr5B.!!$F3 947
2 TraesCS5B01G510100 chr4A 636644718 636656040 11322 True 1132.677778 5158 92.270333 1 8277 9 chr4A.!!$R1 8276
3 TraesCS5B01G510100 chr5D 535130252 535137045 6793 False 1050.510000 3729 94.133500 1 7240 10 chr5D.!!$F4 7239
4 TraesCS5B01G510100 chr5D 127881826 127882692 866 False 229.000000 337 91.862000 3938 5571 2 chr5D.!!$F2 1633
5 TraesCS5B01G510100 chr5D 341436094 341436709 615 False 209.000000 222 90.535000 1185 1522 2 chr5D.!!$F3 337
6 TraesCS5B01G510100 chr7D 7729942 7730614 672 False 656.000000 656 84.262000 4040 4754 1 chr7D.!!$F1 714
7 TraesCS5B01G510100 chr3D 380383196 380384056 860 True 277.000000 374 88.475667 3901 5584 3 chr3D.!!$R2 1683
8 TraesCS5B01G510100 chr3B 770095349 770096060 711 False 276.500000 331 81.728000 3828 5003 2 chr3B.!!$F2 1175
9 TraesCS5B01G510100 chr3B 545009378 545009973 595 True 231.000000 351 85.823000 4641 5581 2 chr3B.!!$R2 940
10 TraesCS5B01G510100 chr1A 50705890 50706422 532 False 255.000000 351 85.723500 3828 4788 2 chr1A.!!$F1 960
11 TraesCS5B01G510100 chr7B 374423454 374424001 547 True 259.500000 337 86.220000 3828 4788 2 chr7B.!!$R1 960
12 TraesCS5B01G510100 chr2A 123336569 123337195 626 True 215.000000 217 91.122500 1185 1535 2 chr2A.!!$R2 350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 516 0.250124 TGTACCTGCCGAACCAGTTG 60.250 55.000 0.00 0.00 0.00 3.16 F
1308 1817 1.272147 GCCAACTGACTCCCCATTTCT 60.272 52.381 0.00 0.00 0.00 2.52 F
2200 3041 0.313672 TGCAGAAACAACGCAATCCC 59.686 50.000 0.00 0.00 31.46 3.85 F
3718 4613 1.348366 TGCTTGTAAAGGCGAGGGTAA 59.652 47.619 0.00 0.00 46.35 2.85 F
3808 4703 1.071385 ACAGGACTCAACAGCTGAAGG 59.929 52.381 23.35 9.21 32.17 3.46 F
4688 5606 1.071071 AGCCATTGTGTTGCTTGCAAT 59.929 42.857 11.32 0.00 33.64 3.56 F
5681 8469 1.962807 TGCAAAGTTCTGGTTGATGGG 59.037 47.619 0.00 0.00 0.00 4.00 F
6697 9548 0.590195 GCCTCATTTGCCATCTAGCG 59.410 55.000 0.00 0.00 34.65 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 2279 3.010138 ACAGCCAAAAGGCAGGACTTATA 59.990 43.478 9.42 0.00 37.35 0.98 R
2728 3581 3.065371 GCAAAATCGATCCTCGTCCATTT 59.935 43.478 0.00 0.00 41.35 2.32 R
3782 4677 1.808945 GCTGTTGAGTCCTGTTCATGG 59.191 52.381 0.00 0.00 0.00 3.66 R
4519 5436 1.000843 TCGACTGGAACACATGACAGG 59.999 52.381 0.00 0.00 35.34 4.00 R
5457 8245 2.083774 GCAGAACCAATGGAATCGACA 58.916 47.619 6.16 0.00 0.00 4.35 R
5701 8489 2.235650 CTCCATGAGACTTCAAGGCTGA 59.764 50.000 0.00 0.00 41.03 4.26 R
7200 10068 0.105039 GTGGGTGCCTCGAGGAATAG 59.895 60.000 35.69 8.57 37.39 1.73 R
8140 11759 0.037590 AAATGAAGTGGCGCTGGGTA 59.962 50.000 7.64 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 2.101640 AGTTGCCAGTTTTCCCCAAT 57.898 45.000 0.00 0.00 0.00 3.16
82 84 0.388907 CAGTTTTCCCCAATGCTGCG 60.389 55.000 0.00 0.00 0.00 5.18
166 168 2.408565 TGCCTAGAGTTTATGGGGGAG 58.591 52.381 0.00 0.00 0.00 4.30
188 195 4.846940 AGCCTCTTCTTCCTTCCTAGAAAA 59.153 41.667 0.00 0.00 30.55 2.29
238 245 7.535139 AGGATGTTGTAACCGTAAATTGATTG 58.465 34.615 0.00 0.00 0.00 2.67
287 294 4.729918 CTCTGCCCACTGCCCCAC 62.730 72.222 0.00 0.00 40.16 4.61
339 346 2.929641 TGTCTCATCTGGTTGTTGCAA 58.070 42.857 0.00 0.00 0.00 4.08
351 358 4.037446 TGGTTGTTGCAATTAACTGGAGAC 59.963 41.667 21.34 10.00 0.00 3.36
411 419 5.982516 GTCTGTCACTGATATGTTCATCCTC 59.017 44.000 0.00 0.00 32.72 3.71
416 424 3.072184 ACTGATATGTTCATCCTCTGGGC 59.928 47.826 0.00 0.00 32.72 5.36
452 460 1.807142 GCTAGCCGCTTGAAAAAGAGT 59.193 47.619 2.29 0.00 35.14 3.24
459 467 3.004734 CCGCTTGAAAAAGAGTGGAACAT 59.995 43.478 0.00 0.00 44.45 2.71
470 478 1.134580 AGTGGAACATGATCAGCGGAG 60.135 52.381 0.00 0.00 44.52 4.63
474 482 2.350522 GAACATGATCAGCGGAGTTGT 58.649 47.619 0.00 0.00 40.49 3.32
508 516 0.250124 TGTACCTGCCGAACCAGTTG 60.250 55.000 0.00 0.00 0.00 3.16
518 526 3.638484 CCGAACCAGTTGGAATTTGAAC 58.362 45.455 4.92 0.00 38.94 3.18
530 538 7.775561 AGTTGGAATTTGAACTTCTGAACTACT 59.224 33.333 9.65 0.00 30.44 2.57
531 539 7.730364 TGGAATTTGAACTTCTGAACTACTC 57.270 36.000 0.00 0.00 0.00 2.59
532 540 6.710744 TGGAATTTGAACTTCTGAACTACTCC 59.289 38.462 0.00 0.00 0.00 3.85
533 541 6.149640 GGAATTTGAACTTCTGAACTACTCCC 59.850 42.308 0.00 0.00 0.00 4.30
535 543 5.470047 TTGAACTTCTGAACTACTCCCTC 57.530 43.478 0.00 0.00 0.00 4.30
536 544 4.742012 TGAACTTCTGAACTACTCCCTCT 58.258 43.478 0.00 0.00 0.00 3.69
538 546 4.120946 ACTTCTGAACTACTCCCTCTGT 57.879 45.455 0.00 0.00 0.00 3.41
539 547 4.484912 ACTTCTGAACTACTCCCTCTGTT 58.515 43.478 0.00 0.00 0.00 3.16
540 548 4.525100 ACTTCTGAACTACTCCCTCTGTTC 59.475 45.833 0.00 0.00 39.18 3.18
541 549 3.432378 TCTGAACTACTCCCTCTGTTCC 58.568 50.000 0.00 0.00 38.29 3.62
542 550 3.076182 TCTGAACTACTCCCTCTGTTCCT 59.924 47.826 0.00 0.00 38.29 3.36
543 551 4.291513 TCTGAACTACTCCCTCTGTTCCTA 59.708 45.833 0.00 0.00 38.29 2.94
544 552 5.006896 TGAACTACTCCCTCTGTTCCTAA 57.993 43.478 0.00 0.00 38.29 2.69
545 553 5.399991 TGAACTACTCCCTCTGTTCCTAAA 58.600 41.667 0.00 0.00 38.29 1.85
546 554 6.023603 TGAACTACTCCCTCTGTTCCTAAAT 58.976 40.000 0.00 0.00 38.29 1.40
547 555 7.186972 TGAACTACTCCCTCTGTTCCTAAATA 58.813 38.462 0.00 0.00 38.29 1.40
548 556 7.844779 TGAACTACTCCCTCTGTTCCTAAATAT 59.155 37.037 0.00 0.00 38.29 1.28
549 557 9.364653 GAACTACTCCCTCTGTTCCTAAATATA 57.635 37.037 0.00 0.00 34.47 0.86
550 558 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
551 559 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
552 560 7.068686 ACTCCCTCTGTTCCTAAATATAAGC 57.931 40.000 0.00 0.00 0.00 3.09
553 561 6.043358 ACTCCCTCTGTTCCTAAATATAAGCC 59.957 42.308 0.00 0.00 0.00 4.35
554 562 5.011738 TCCCTCTGTTCCTAAATATAAGCCG 59.988 44.000 0.00 0.00 0.00 5.52
555 563 5.238583 CCTCTGTTCCTAAATATAAGCCGG 58.761 45.833 0.00 0.00 0.00 6.13
556 564 5.221661 CCTCTGTTCCTAAATATAAGCCGGT 60.222 44.000 1.90 0.00 0.00 5.28
557 565 6.243216 TCTGTTCCTAAATATAAGCCGGTT 57.757 37.500 1.90 0.00 0.00 4.44
558 566 6.655930 TCTGTTCCTAAATATAAGCCGGTTT 58.344 36.000 9.08 9.08 0.00 3.27
559 567 6.764560 TCTGTTCCTAAATATAAGCCGGTTTC 59.235 38.462 6.88 0.00 0.00 2.78
560 568 5.524646 TGTTCCTAAATATAAGCCGGTTTCG 59.475 40.000 6.88 0.00 0.00 3.46
561 569 5.534207 TCCTAAATATAAGCCGGTTTCGA 57.466 39.130 6.88 0.00 39.00 3.71
562 570 5.291971 TCCTAAATATAAGCCGGTTTCGAC 58.708 41.667 6.88 0.00 39.00 4.20
563 571 5.051816 CCTAAATATAAGCCGGTTTCGACA 58.948 41.667 6.88 0.00 39.00 4.35
564 572 5.524646 CCTAAATATAAGCCGGTTTCGACAA 59.475 40.000 6.88 0.00 39.00 3.18
565 573 5.883503 AAATATAAGCCGGTTTCGACAAA 57.116 34.783 6.88 0.00 39.00 2.83
566 574 5.883503 AATATAAGCCGGTTTCGACAAAA 57.116 34.783 6.88 0.00 39.00 2.44
567 575 3.547649 ATAAGCCGGTTTCGACAAAAC 57.452 42.857 6.88 0.00 45.46 2.43
580 588 9.469239 GGTTTCGACAAAACGACTTATATTTAG 57.531 33.333 0.00 0.00 46.85 1.85
581 589 9.469239 GTTTCGACAAAACGACTTATATTTAGG 57.531 33.333 0.00 0.00 41.97 2.69
582 590 8.984891 TTCGACAAAACGACTTATATTTAGGA 57.015 30.769 0.00 0.00 41.97 2.94
583 591 8.984891 TCGACAAAACGACTTATATTTAGGAA 57.015 30.769 0.00 0.00 37.37 3.36
584 592 8.863049 TCGACAAAACGACTTATATTTAGGAAC 58.137 33.333 0.00 0.00 37.37 3.62
585 593 7.837923 CGACAAAACGACTTATATTTAGGAACG 59.162 37.037 0.00 0.00 35.09 3.95
586 594 7.967178 ACAAAACGACTTATATTTAGGAACGG 58.033 34.615 0.00 0.00 0.00 4.44
587 595 7.818930 ACAAAACGACTTATATTTAGGAACGGA 59.181 33.333 0.00 0.00 0.00 4.69
588 596 8.658609 CAAAACGACTTATATTTAGGAACGGAA 58.341 33.333 0.00 0.00 0.00 4.30
589 597 8.953368 AAACGACTTATATTTAGGAACGGAAT 57.047 30.769 0.00 0.00 0.00 3.01
590 598 7.941795 ACGACTTATATTTAGGAACGGAATG 57.058 36.000 0.00 0.00 0.00 2.67
591 599 7.719483 ACGACTTATATTTAGGAACGGAATGA 58.281 34.615 0.00 0.00 0.00 2.57
592 600 7.866393 ACGACTTATATTTAGGAACGGAATGAG 59.134 37.037 0.00 0.00 0.00 2.90
593 601 8.080417 CGACTTATATTTAGGAACGGAATGAGA 58.920 37.037 0.00 0.00 0.00 3.27
594 602 9.413048 GACTTATATTTAGGAACGGAATGAGAG 57.587 37.037 0.00 0.00 0.00 3.20
603 611 6.481643 AGGAACGGAATGAGAGGAAAATTTA 58.518 36.000 0.00 0.00 0.00 1.40
644 660 6.042638 TGGTGAAAACCAATTGAAAACTGA 57.957 33.333 7.12 0.00 36.74 3.41
663 686 6.210287 ACTGAAGTACTATGTTACTGCCTC 57.790 41.667 0.00 0.00 0.00 4.70
665 688 7.117397 ACTGAAGTACTATGTTACTGCCTCTA 58.883 38.462 0.00 0.00 0.00 2.43
666 689 7.283580 ACTGAAGTACTATGTTACTGCCTCTAG 59.716 40.741 0.00 0.00 0.00 2.43
673 879 7.291566 ACTATGTTACTGCCTCTAGTAGTGAT 58.708 38.462 0.69 0.00 42.03 3.06
680 886 7.906199 ACTGCCTCTAGTAGTGATCTAAAAT 57.094 36.000 0.69 0.00 40.31 1.82
830 1041 7.554476 AGGAGAAGCTCTTAACAATTTATCACC 59.446 37.037 0.00 0.00 0.00 4.02
997 1212 3.003763 GGAGTCTTCCCGCCCACT 61.004 66.667 0.00 0.00 37.53 4.00
1010 1225 2.692741 CCACTTCCCCTCCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
1013 1228 3.711782 CTTCCCCTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
1014 1229 3.707189 TTCCCCTCCCCTCCCCTC 61.707 72.222 0.00 0.00 0.00 4.30
1021 1236 4.371231 CCCCTCCCCTCCCTTGGT 62.371 72.222 0.00 0.00 0.00 3.67
1127 1342 2.348888 GGTCATCACCTCGTCCGGT 61.349 63.158 0.00 0.00 40.00 5.28
1308 1817 1.272147 GCCAACTGACTCCCCATTTCT 60.272 52.381 0.00 0.00 0.00 2.52
1375 1884 9.139174 GGATTTGAACAATGTGTTGGTAATTAG 57.861 33.333 0.00 0.00 41.28 1.73
1385 2019 9.569122 AATGTGTTGGTAATTAGTACTCAACTT 57.431 29.630 18.30 7.02 40.66 2.66
1539 2279 8.863086 TGGTTACTTAGTTACTTGATGTACTGT 58.137 33.333 1.56 0.00 0.00 3.55
1809 2649 0.988063 AAGAGAAGGAGGCTTCCCAC 59.012 55.000 11.97 6.02 45.24 4.61
1929 2769 4.572795 GCTTAAGCACCTTGTAATCTCCTC 59.427 45.833 22.59 0.00 41.59 3.71
1960 2800 7.899178 ATGAACGAAATATGTGTGTGTTAGA 57.101 32.000 0.00 0.00 0.00 2.10
1971 2811 6.371809 TGTGTGTGTTAGAAATTCCTTGAC 57.628 37.500 0.00 0.00 0.00 3.18
2200 3041 0.313672 TGCAGAAACAACGCAATCCC 59.686 50.000 0.00 0.00 31.46 3.85
2727 3580 9.976255 CATTAACAAATGCATAAAGGAAATGTG 57.024 29.630 0.00 0.00 0.00 3.21
2728 3581 9.941325 ATTAACAAATGCATAAAGGAAATGTGA 57.059 25.926 0.00 0.00 0.00 3.58
2982 3864 9.626045 CAAAGCTTTTAGGTTGTATAAAGGAAG 57.374 33.333 9.53 0.00 35.89 3.46
2983 3865 8.935614 AAGCTTTTAGGTTGTATAAAGGAAGT 57.064 30.769 0.00 0.00 34.21 3.01
2985 3867 9.445878 AGCTTTTAGGTTGTATAAAGGAAGTAC 57.554 33.333 0.00 0.00 0.00 2.73
2986 3868 9.445878 GCTTTTAGGTTGTATAAAGGAAGTACT 57.554 33.333 0.00 0.00 0.00 2.73
2990 3872 9.933723 TTAGGTTGTATAAAGGAAGTACTGTTC 57.066 33.333 0.00 0.00 0.00 3.18
2991 3873 7.970102 AGGTTGTATAAAGGAAGTACTGTTCA 58.030 34.615 0.00 0.00 0.00 3.18
2992 3874 8.434392 AGGTTGTATAAAGGAAGTACTGTTCAA 58.566 33.333 0.00 0.00 0.00 2.69
2993 3875 9.059260 GGTTGTATAAAGGAAGTACTGTTCAAA 57.941 33.333 0.00 0.00 0.00 2.69
3000 3882 8.608844 AAAGGAAGTACTGTTCAAAGATACAG 57.391 34.615 0.00 0.00 45.61 2.74
3155 4037 8.554528 CACTTATGAGATCAACTGCGATATTTT 58.445 33.333 0.00 0.00 0.00 1.82
3232 4123 8.582433 AAAAAGTTTACCATAATGTGAAACCG 57.418 30.769 0.00 0.00 34.36 4.44
3392 4283 9.338622 GAGCTTACCTTTGCTTTATATAGGAAA 57.661 33.333 9.00 9.00 39.91 3.13
3566 4457 4.508662 AGTGCTTGCTGGTATAGTTTCTC 58.491 43.478 0.00 0.00 0.00 2.87
3596 4487 5.633830 TGATCAGGTTTGATTGAAGCTTC 57.366 39.130 19.89 19.89 44.01 3.86
3598 4489 5.182570 TGATCAGGTTTGATTGAAGCTTCTG 59.817 40.000 26.09 13.13 44.01 3.02
3718 4613 1.348366 TGCTTGTAAAGGCGAGGGTAA 59.652 47.619 0.00 0.00 46.35 2.85
3728 4623 2.103263 AGGCGAGGGTAAAAGATAGCAG 59.897 50.000 0.00 0.00 0.00 4.24
3730 4625 2.741878 GCGAGGGTAAAAGATAGCAGCA 60.742 50.000 0.00 0.00 0.00 4.41
3782 4677 1.134580 TGCTCAGCTCTCCACTATTGC 60.135 52.381 0.00 0.00 0.00 3.56
3808 4703 1.071385 ACAGGACTCAACAGCTGAAGG 59.929 52.381 23.35 9.21 32.17 3.46
3817 4712 2.551459 CAACAGCTGAAGGTTCCTTCTG 59.449 50.000 23.35 24.96 41.97 3.02
3872 4767 3.988819 GCCAATTGCTTTACTGGTGAAA 58.011 40.909 0.00 0.00 36.87 2.69
3944 4859 2.201921 TCGCTCTGTGGTAGACTCTT 57.798 50.000 0.00 0.00 0.00 2.85
4024 4939 6.995686 TGGATGAACTGTAAAAGCTGACTTTA 59.004 34.615 0.00 0.00 45.48 1.85
4209 5124 7.830099 AATCTTTTCAGGTTCATTTCACTCT 57.170 32.000 0.00 0.00 0.00 3.24
4219 5134 9.003658 CAGGTTCATTTCACTCTATACAAGTTT 57.996 33.333 0.00 0.00 0.00 2.66
4346 5263 1.280421 GAGGAGCCTCAGGAATTGTGT 59.720 52.381 11.58 0.00 42.31 3.72
4519 5436 1.614241 TAAGGAGCCAAGGACCTCGC 61.614 60.000 0.00 0.00 33.16 5.03
4688 5606 1.071071 AGCCATTGTGTTGCTTGCAAT 59.929 42.857 11.32 0.00 33.64 3.56
4886 5840 4.518970 TCCTGTGAGTTCTGTTTATTTGCC 59.481 41.667 0.00 0.00 0.00 4.52
4995 7764 7.752695 AGAACCTGCTTTGAGAAAATAATACG 58.247 34.615 0.00 0.00 0.00 3.06
5021 7790 3.146847 GTTTCACCTTGGTAGAACCTGG 58.853 50.000 0.00 0.00 39.58 4.45
5172 7958 5.867174 TCATACAGTTCGATACAACTTGTGG 59.133 40.000 4.57 0.00 34.17 4.17
5214 8000 2.290641 GTGTGGTGTAAGTTCCTGCAAG 59.709 50.000 0.00 0.00 0.00 4.01
5215 8001 2.092646 TGTGGTGTAAGTTCCTGCAAGT 60.093 45.455 0.00 0.00 0.00 3.16
5216 8002 3.134985 TGTGGTGTAAGTTCCTGCAAGTA 59.865 43.478 0.00 0.00 0.00 2.24
5217 8003 3.497262 GTGGTGTAAGTTCCTGCAAGTAC 59.503 47.826 0.00 0.00 0.00 2.73
5343 8131 2.161855 TGCAAAGTAAGCACATCTGGG 58.838 47.619 0.00 0.00 37.02 4.45
5558 8346 5.045213 TGGAGTTGGTCATATGGTGTACATT 60.045 40.000 0.00 0.00 41.03 2.71
5603 8391 6.362016 TGAATAAAACAAACATGTAAGCAGCG 59.638 34.615 0.00 0.00 0.00 5.18
5681 8469 1.962807 TGCAAAGTTCTGGTTGATGGG 59.037 47.619 0.00 0.00 0.00 4.00
5682 8470 1.963515 GCAAAGTTCTGGTTGATGGGT 59.036 47.619 0.00 0.00 0.00 4.51
5683 8471 2.365293 GCAAAGTTCTGGTTGATGGGTT 59.635 45.455 0.00 0.00 0.00 4.11
5684 8472 3.572255 GCAAAGTTCTGGTTGATGGGTTA 59.428 43.478 0.00 0.00 0.00 2.85
5685 8473 4.220602 GCAAAGTTCTGGTTGATGGGTTAT 59.779 41.667 0.00 0.00 0.00 1.89
5686 8474 5.279456 GCAAAGTTCTGGTTGATGGGTTATT 60.279 40.000 0.00 0.00 0.00 1.40
5854 8642 6.414987 GCAAACAGAACACATGTAACTCTTTC 59.585 38.462 0.00 0.00 0.00 2.62
5870 8660 6.681729 ACTCTTTCCCACTAGACAATTACA 57.318 37.500 0.00 0.00 0.00 2.41
5962 8752 5.666969 TCAGGTTGAAATCTGTAAACGTG 57.333 39.130 3.35 0.00 38.88 4.49
5978 8768 3.619233 ACGTGCAATAAAACCAGTCAC 57.381 42.857 0.00 0.00 0.00 3.67
5988 8778 4.657814 AAAACCAGTCACCAGATACCAT 57.342 40.909 0.00 0.00 0.00 3.55
5989 8779 3.634397 AACCAGTCACCAGATACCATG 57.366 47.619 0.00 0.00 0.00 3.66
6153 8944 5.862924 AGTTGTCGTTATTCCACAATCTG 57.137 39.130 0.00 0.00 32.80 2.90
6326 9117 5.817816 CGGCTGTAGAGTTCCTTCAAATATT 59.182 40.000 0.00 0.00 0.00 1.28
6397 9189 6.442564 TGTCCCACCACTCATATAATATACCC 59.557 42.308 0.00 0.00 0.00 3.69
6413 9205 6.824958 ATATACCCAACATGTGAGGTACTT 57.175 37.500 22.97 14.25 41.55 2.24
6425 9217 0.614134 AGGTACTTCCTCCGTCCCAC 60.614 60.000 0.00 0.00 44.42 4.61
6444 9236 5.007234 TCCCACAATATAAGACGATTTTGCG 59.993 40.000 0.00 0.00 37.29 4.85
6450 9242 7.223971 ACAATATAAGACGATTTTGCGAGCTAA 59.776 33.333 0.00 0.00 34.83 3.09
6473 9308 4.112634 AGTGCTTTTCAACATCCCCTTA 57.887 40.909 0.00 0.00 0.00 2.69
6524 9363 4.380867 GGAAAGGTGGTAGCATTTCATGTG 60.381 45.833 17.99 0.00 34.15 3.21
6566 9417 6.819284 AGTGCTTCTGATTTTTCCAAAATGA 58.181 32.000 0.00 0.00 0.00 2.57
6615 9466 7.441760 TGAGCAAAAGCATGTTTTGTTAATCAT 59.558 29.630 22.78 2.08 0.00 2.45
6619 9470 9.890085 CAAAAGCATGTTTTGTTAATCATATCG 57.110 29.630 8.40 0.00 0.00 2.92
6663 9514 5.835113 AAACATCATTCCCGTAATTGGAG 57.165 39.130 0.00 0.00 32.37 3.86
6674 9525 3.368323 CCGTAATTGGAGCATTGCCTTTT 60.368 43.478 4.70 0.00 0.00 2.27
6697 9548 0.590195 GCCTCATTTGCCATCTAGCG 59.410 55.000 0.00 0.00 34.65 4.26
6700 9551 2.141517 CTCATTTGCCATCTAGCGGAG 58.858 52.381 2.40 0.00 34.65 4.63
6865 9732 4.125695 GGGTACGCCGAGAACGCT 62.126 66.667 0.00 0.00 38.29 5.07
6907 9774 2.121291 TCGTGAGAGCTCAGAGATGT 57.879 50.000 17.77 0.00 40.75 3.06
6963 9830 6.325919 CAAAGTTTGCCATAGAACCTGTTA 57.674 37.500 1.96 0.00 0.00 2.41
6964 9831 6.924111 CAAAGTTTGCCATAGAACCTGTTAT 58.076 36.000 1.96 0.00 0.00 1.89
6965 9832 8.050778 CAAAGTTTGCCATAGAACCTGTTATA 57.949 34.615 1.96 0.00 0.00 0.98
6966 9833 7.625828 AAGTTTGCCATAGAACCTGTTATAC 57.374 36.000 0.00 0.00 0.00 1.47
6986 9853 3.607661 GGCTCGGGAGTCGGGATC 61.608 72.222 0.00 0.00 43.26 3.36
7018 9886 2.260434 CCGTCGTGGTCATCCGTT 59.740 61.111 0.00 0.00 36.30 4.44
7136 10004 1.298859 GATGGCGTGTGGTTCAGTCC 61.299 60.000 0.00 0.00 0.00 3.85
7147 10015 1.200020 GGTTCAGTCCGGCAAAAGATG 59.800 52.381 0.00 0.00 0.00 2.90
7197 10065 1.003696 GGCTGTGGCTTCTACTTCCTT 59.996 52.381 0.00 0.00 38.73 3.36
7199 10067 2.744741 GCTGTGGCTTCTACTTCCTTTC 59.255 50.000 0.00 0.00 35.22 2.62
7200 10068 3.339141 CTGTGGCTTCTACTTCCTTTCC 58.661 50.000 0.00 0.00 0.00 3.13
7201 10069 2.979678 TGTGGCTTCTACTTCCTTTCCT 59.020 45.455 0.00 0.00 0.00 3.36
7208 10541 6.285224 GCTTCTACTTCCTTTCCTATTCCTC 58.715 44.000 0.00 0.00 0.00 3.71
7212 10545 3.707102 ACTTCCTTTCCTATTCCTCGAGG 59.293 47.826 26.32 26.32 0.00 4.63
7226 10559 3.373226 GAGGCACCCACTCGTGTA 58.627 61.111 0.00 0.00 36.08 2.90
7241 10574 0.109226 GTGTAGTCGAGTGACCAGCC 60.109 60.000 2.10 0.00 46.74 4.85
7258 10591 1.966451 CCGGGATCCTATTTGGCGC 60.966 63.158 12.58 0.00 35.26 6.53
7260 10593 1.227853 GGGATCCTATTTGGCGCGT 60.228 57.895 12.58 0.00 35.26 6.01
7263 10596 1.507141 GATCCTATTTGGCGCGTGGG 61.507 60.000 8.43 0.00 35.26 4.61
7264 10597 3.887868 CCTATTTGGCGCGTGGGC 61.888 66.667 8.43 0.00 42.69 5.36
7311 10644 1.078497 TGGGTTCCTGCTGCATACG 60.078 57.895 1.31 0.00 0.00 3.06
7319 10652 1.361668 CTGCTGCATACGTTTCGGCT 61.362 55.000 1.31 0.00 33.50 5.52
7320 10653 1.060937 GCTGCATACGTTTCGGCTG 59.939 57.895 0.00 0.00 0.00 4.85
7323 10656 3.098555 CATACGTTTCGGCTGGCC 58.901 61.111 0.00 0.00 0.00 5.36
7331 10664 0.039035 TTTCGGCTGGCCCAACTAAT 59.961 50.000 0.00 0.00 0.00 1.73
7335 10668 1.780503 GGCTGGCCCAACTAATTCAT 58.219 50.000 0.00 0.00 0.00 2.57
7337 10670 2.159057 GGCTGGCCCAACTAATTCATTG 60.159 50.000 0.00 0.00 0.00 2.82
7338 10671 2.159057 GCTGGCCCAACTAATTCATTGG 60.159 50.000 0.00 11.94 44.31 3.16
7340 10673 3.515104 CTGGCCCAACTAATTCATTGGTT 59.485 43.478 15.87 0.00 43.36 3.67
7341 10674 3.906846 TGGCCCAACTAATTCATTGGTTT 59.093 39.130 15.87 0.00 43.36 3.27
7342 10675 4.349342 TGGCCCAACTAATTCATTGGTTTT 59.651 37.500 15.87 0.00 43.36 2.43
7460 10834 8.602328 TCATGAACATGTTTCAAATTTGTGAAC 58.398 29.630 22.07 22.07 39.72 3.18
7649 11025 8.872845 ACTTTTGTGAACATTTCTTGAATTCAC 58.127 29.630 7.89 15.66 36.60 3.18
7650 11026 7.448588 TTTGTGAACATTTCTTGAATTCACG 57.551 32.000 7.89 6.62 37.90 4.35
7651 11027 4.975502 TGTGAACATTTCTTGAATTCACGC 59.024 37.500 7.89 0.71 37.90 5.34
7652 11028 4.975502 GTGAACATTTCTTGAATTCACGCA 59.024 37.500 7.89 0.00 30.20 5.24
7653 11029 5.630680 GTGAACATTTCTTGAATTCACGCAT 59.369 36.000 7.89 0.00 30.20 4.73
7654 11030 5.630264 TGAACATTTCTTGAATTCACGCATG 59.370 36.000 7.89 13.44 0.00 4.06
7655 11031 5.125100 ACATTTCTTGAATTCACGCATGT 57.875 34.783 7.89 14.02 0.00 3.21
7656 11032 5.531634 ACATTTCTTGAATTCACGCATGTT 58.468 33.333 7.89 1.78 0.00 2.71
7657 11033 5.984926 ACATTTCTTGAATTCACGCATGTTT 59.015 32.000 7.89 0.00 0.00 2.83
7658 11034 6.479660 ACATTTCTTGAATTCACGCATGTTTT 59.520 30.769 7.89 0.00 0.00 2.43
7659 11035 6.900568 TTTCTTGAATTCACGCATGTTTTT 57.099 29.167 7.89 0.00 0.00 1.94
7660 11036 6.509317 TTCTTGAATTCACGCATGTTTTTC 57.491 33.333 7.89 0.00 0.00 2.29
7661 11037 5.586339 TCTTGAATTCACGCATGTTTTTCA 58.414 33.333 7.89 0.00 0.00 2.69
7662 11038 6.038985 TCTTGAATTCACGCATGTTTTTCAA 58.961 32.000 7.89 7.10 32.92 2.69
7663 11039 6.533012 TCTTGAATTCACGCATGTTTTTCAAA 59.467 30.769 7.89 0.00 33.22 2.69
7664 11040 6.030379 TGAATTCACGCATGTTTTTCAAAC 57.970 33.333 3.38 0.00 0.00 2.93
7665 11041 5.809562 TGAATTCACGCATGTTTTTCAAACT 59.190 32.000 3.38 0.00 0.00 2.66
7666 11042 6.975197 TGAATTCACGCATGTTTTTCAAACTA 59.025 30.769 3.38 0.00 0.00 2.24
7667 11043 6.747659 ATTCACGCATGTTTTTCAAACTAC 57.252 33.333 0.00 0.00 0.00 2.73
7668 11044 4.275662 TCACGCATGTTTTTCAAACTACG 58.724 39.130 0.00 4.85 0.00 3.51
7669 11045 4.032355 CACGCATGTTTTTCAAACTACGT 58.968 39.130 0.00 0.00 0.00 3.57
7670 11046 4.032355 ACGCATGTTTTTCAAACTACGTG 58.968 39.130 0.00 0.00 0.00 4.49
7671 11047 4.201832 ACGCATGTTTTTCAAACTACGTGA 60.202 37.500 0.00 0.00 30.88 4.35
7672 11048 4.909305 CGCATGTTTTTCAAACTACGTGAT 59.091 37.500 0.00 0.00 30.88 3.06
7673 11049 5.398122 CGCATGTTTTTCAAACTACGTGATT 59.602 36.000 0.00 0.00 30.88 2.57
7674 11050 6.075099 CGCATGTTTTTCAAACTACGTGATTT 60.075 34.615 0.00 0.00 30.88 2.17
7675 11051 7.514435 CGCATGTTTTTCAAACTACGTGATTTT 60.514 33.333 0.00 0.00 30.88 1.82
7676 11052 8.113675 GCATGTTTTTCAAACTACGTGATTTTT 58.886 29.630 0.00 0.00 30.88 1.94
7712 11088 7.133513 ACACTTTTTGAATACGCGAACATTTA 58.866 30.769 15.93 3.09 0.00 1.40
7713 11089 7.322699 ACACTTTTTGAATACGCGAACATTTAG 59.677 33.333 15.93 1.93 0.00 1.85
7714 11090 7.322699 CACTTTTTGAATACGCGAACATTTAGT 59.677 33.333 15.93 2.61 0.00 2.24
7761 11169 8.647143 ACATTTTGTAAAAGTTCATGACCTTG 57.353 30.769 6.24 0.00 0.00 3.61
7762 11170 8.257306 ACATTTTGTAAAAGTTCATGACCTTGT 58.743 29.630 6.24 3.46 0.00 3.16
7763 11171 8.542132 CATTTTGTAAAAGTTCATGACCTTGTG 58.458 33.333 6.24 0.00 0.00 3.33
7764 11172 7.397892 TTTGTAAAAGTTCATGACCTTGTGA 57.602 32.000 6.24 0.00 0.00 3.58
7765 11173 7.397892 TTGTAAAAGTTCATGACCTTGTGAA 57.602 32.000 6.24 0.00 32.31 3.18
7775 11183 6.272318 TCATGACCTTGTGAACATTGTTTTC 58.728 36.000 3.08 1.32 0.00 2.29
7776 11184 5.651387 TGACCTTGTGAACATTGTTTTCA 57.349 34.783 3.08 3.84 0.00 2.69
7779 11187 6.589523 TGACCTTGTGAACATTGTTTTCAAAG 59.410 34.615 3.08 8.51 43.39 2.77
7857 11266 9.658799 TTTGTGTCCTTGAACATTTTATTTTCA 57.341 25.926 0.00 0.00 0.00 2.69
7859 11268 9.658799 TGTGTCCTTGAACATTTTATTTTCAAA 57.341 25.926 0.00 0.00 38.45 2.69
7894 11303 8.628630 TTTTTGAATTTCTGGAACCTTTTTGT 57.371 26.923 0.00 0.00 0.00 2.83
7896 11305 9.726438 TTTTGAATTTCTGGAACCTTTTTGTAA 57.274 25.926 0.00 0.00 0.00 2.41
7897 11306 9.898152 TTTGAATTTCTGGAACCTTTTTGTAAT 57.102 25.926 0.00 0.00 0.00 1.89
7898 11307 9.541143 TTGAATTTCTGGAACCTTTTTGTAATC 57.459 29.630 0.00 0.00 0.00 1.75
7899 11308 8.147704 TGAATTTCTGGAACCTTTTTGTAATCC 58.852 33.333 0.00 0.00 0.00 3.01
7900 11309 6.413783 TTTCTGGAACCTTTTTGTAATCCC 57.586 37.500 0.00 0.00 0.00 3.85
7901 11310 5.068215 TCTGGAACCTTTTTGTAATCCCA 57.932 39.130 0.00 0.00 0.00 4.37
7902 11311 5.459505 TCTGGAACCTTTTTGTAATCCCAA 58.540 37.500 0.00 0.00 0.00 4.12
7903 11312 5.900123 TCTGGAACCTTTTTGTAATCCCAAA 59.100 36.000 0.00 0.00 32.70 3.28
7904 11313 6.556874 TCTGGAACCTTTTTGTAATCCCAAAT 59.443 34.615 0.00 0.00 34.50 2.32
7905 11314 7.071824 TCTGGAACCTTTTTGTAATCCCAAATT 59.928 33.333 0.00 0.00 34.50 1.82
7907 11316 8.885346 TGGAACCTTTTTGTAATCCCAAATTAT 58.115 29.630 0.00 0.00 34.50 1.28
7908 11317 9.733556 GGAACCTTTTTGTAATCCCAAATTATT 57.266 29.630 0.00 0.00 34.50 1.40
7958 11577 9.467796 AGGAAATAGGTAAGAGAAGGAAAAATG 57.532 33.333 0.00 0.00 0.00 2.32
7959 11578 9.462606 GGAAATAGGTAAGAGAAGGAAAAATGA 57.537 33.333 0.00 0.00 0.00 2.57
7979 11598 2.653557 AAAAATGGCGTCCAGTCCC 58.346 52.632 4.90 0.00 36.75 4.46
7980 11599 1.241315 AAAAATGGCGTCCAGTCCCG 61.241 55.000 4.90 0.00 36.75 5.14
7981 11600 2.406002 AAAATGGCGTCCAGTCCCGT 62.406 55.000 4.90 0.00 36.75 5.28
7982 11601 1.546589 AAATGGCGTCCAGTCCCGTA 61.547 55.000 4.90 0.00 36.75 4.02
7983 11602 1.546589 AATGGCGTCCAGTCCCGTAA 61.547 55.000 4.90 0.00 36.75 3.18
7984 11603 1.546589 ATGGCGTCCAGTCCCGTAAA 61.547 55.000 4.90 0.00 36.75 2.01
7985 11604 1.219935 GGCGTCCAGTCCCGTAAAT 59.780 57.895 0.00 0.00 0.00 1.40
7986 11605 1.087771 GGCGTCCAGTCCCGTAAATG 61.088 60.000 0.00 0.00 0.00 2.32
8029 11648 4.699522 GAAGGGAGGGCGTGCGTT 62.700 66.667 6.35 6.35 0.00 4.84
8042 11661 2.807895 GCGTTGGCTCGTTCGCTA 60.808 61.111 0.00 0.00 44.28 4.26
8043 11662 2.789203 GCGTTGGCTCGTTCGCTAG 61.789 63.158 0.00 0.00 44.28 3.42
8045 11664 1.736645 GTTGGCTCGTTCGCTAGCA 60.737 57.895 16.45 0.00 40.61 3.49
8046 11665 1.084370 GTTGGCTCGTTCGCTAGCAT 61.084 55.000 16.45 0.00 40.61 3.79
8047 11666 1.083806 TTGGCTCGTTCGCTAGCATG 61.084 55.000 16.45 1.39 40.61 4.06
8048 11667 2.623173 GCTCGTTCGCTAGCATGC 59.377 61.111 16.45 10.51 38.63 4.06
8050 11669 1.633171 CTCGTTCGCTAGCATGCAC 59.367 57.895 21.98 7.01 0.00 4.57
8052 11671 2.703409 GTTCGCTAGCATGCACCG 59.297 61.111 21.98 18.17 0.00 4.94
8053 11672 3.195002 TTCGCTAGCATGCACCGC 61.195 61.111 21.98 17.11 0.00 5.68
8055 11674 4.228097 CGCTAGCATGCACCGCAC 62.228 66.667 21.98 1.76 43.04 5.34
8056 11675 2.821366 GCTAGCATGCACCGCACT 60.821 61.111 21.98 0.00 43.04 4.40
8059 11678 1.368641 CTAGCATGCACCGCACTAAA 58.631 50.000 21.98 0.00 43.04 1.85
8061 11680 1.176527 AGCATGCACCGCACTAAAAT 58.823 45.000 21.98 0.00 43.04 1.82
8062 11681 2.364632 AGCATGCACCGCACTAAAATA 58.635 42.857 21.98 0.00 43.04 1.40
8065 11684 2.772077 TGCACCGCACTAAAATAGGA 57.228 45.000 0.00 0.00 31.71 2.94
8067 11686 1.330829 GCACCGCACTAAAATAGGAGC 59.669 52.381 0.00 0.00 0.00 4.70
8068 11687 2.906354 CACCGCACTAAAATAGGAGCT 58.094 47.619 0.00 0.00 0.00 4.09
8069 11688 2.866762 CACCGCACTAAAATAGGAGCTC 59.133 50.000 4.71 4.71 0.00 4.09
8070 11689 2.158943 ACCGCACTAAAATAGGAGCTCC 60.159 50.000 26.22 26.22 0.00 4.70
8071 11690 2.484889 CGCACTAAAATAGGAGCTCCC 58.515 52.381 29.54 11.59 36.42 4.30
8072 11691 2.484889 GCACTAAAATAGGAGCTCCCG 58.515 52.381 29.54 11.12 40.87 5.14
8073 11692 2.807108 GCACTAAAATAGGAGCTCCCGG 60.807 54.545 29.54 13.22 40.87 5.73
8074 11693 2.434702 CACTAAAATAGGAGCTCCCGGT 59.565 50.000 29.54 13.83 40.87 5.28
8075 11694 2.434702 ACTAAAATAGGAGCTCCCGGTG 59.565 50.000 29.54 14.80 40.87 4.94
8077 11696 0.831307 AAATAGGAGCTCCCGGTGAC 59.169 55.000 29.54 2.09 40.87 3.67
8079 11698 2.238319 ATAGGAGCTCCCGGTGACCA 62.238 60.000 29.54 4.86 40.87 4.02
8080 11699 2.449967 TAGGAGCTCCCGGTGACCAA 62.450 60.000 29.54 0.90 40.87 3.67
8082 11701 1.376037 GAGCTCCCGGTGACCAAAG 60.376 63.158 0.87 0.00 0.00 2.77
8083 11702 3.056328 GCTCCCGGTGACCAAAGC 61.056 66.667 1.11 3.12 0.00 3.51
8084 11703 2.750350 CTCCCGGTGACCAAAGCT 59.250 61.111 1.11 0.00 0.00 3.74
8086 11705 0.391263 CTCCCGGTGACCAAAGCTAC 60.391 60.000 1.11 0.00 0.00 3.58
8087 11706 1.376812 CCCGGTGACCAAAGCTACC 60.377 63.158 1.11 0.00 0.00 3.18
8088 11707 1.677552 CCGGTGACCAAAGCTACCT 59.322 57.895 1.11 0.00 0.00 3.08
8089 11708 0.899720 CCGGTGACCAAAGCTACCTA 59.100 55.000 1.11 0.00 0.00 3.08
8090 11709 1.485066 CCGGTGACCAAAGCTACCTAT 59.515 52.381 1.11 0.00 0.00 2.57
8091 11710 2.093128 CCGGTGACCAAAGCTACCTATT 60.093 50.000 1.11 0.00 0.00 1.73
8092 11711 2.936498 CGGTGACCAAAGCTACCTATTG 59.064 50.000 1.11 0.00 0.00 1.90
8093 11712 3.618997 CGGTGACCAAAGCTACCTATTGT 60.619 47.826 1.11 0.00 0.00 2.71
8094 11713 4.332828 GGTGACCAAAGCTACCTATTGTT 58.667 43.478 0.00 0.00 0.00 2.83
8095 11714 4.156008 GGTGACCAAAGCTACCTATTGTTG 59.844 45.833 0.00 0.00 0.00 3.33
8099 11718 5.381757 ACCAAAGCTACCTATTGTTGAACA 58.618 37.500 0.00 0.00 0.00 3.18
8101 11720 5.473504 CCAAAGCTACCTATTGTTGAACACT 59.526 40.000 0.00 0.00 0.00 3.55
8103 11722 6.803154 AAGCTACCTATTGTTGAACACTTC 57.197 37.500 0.00 0.00 0.00 3.01
8104 11723 5.246307 AGCTACCTATTGTTGAACACTTCC 58.754 41.667 0.00 0.00 0.00 3.46
8106 11725 5.648092 GCTACCTATTGTTGAACACTTCCAT 59.352 40.000 0.00 0.00 0.00 3.41
8107 11726 5.964958 ACCTATTGTTGAACACTTCCATG 57.035 39.130 0.00 0.00 0.00 3.66
8108 11727 4.766891 ACCTATTGTTGAACACTTCCATGG 59.233 41.667 4.97 4.97 0.00 3.66
8109 11728 4.158394 CCTATTGTTGAACACTTCCATGGG 59.842 45.833 13.02 0.00 0.00 4.00
8110 11729 1.327303 TGTTGAACACTTCCATGGGC 58.673 50.000 13.02 0.00 0.00 5.36
8113 11732 1.076549 GAACACTTCCATGGGCCCA 59.923 57.895 30.92 30.92 0.00 5.36
8115 11734 0.542702 AACACTTCCATGGGCCCAAG 60.543 55.000 32.58 26.17 0.00 3.61
8116 11735 1.077265 CACTTCCATGGGCCCAAGT 59.923 57.895 32.58 25.05 0.00 3.16
8117 11736 0.967380 CACTTCCATGGGCCCAAGTC 60.967 60.000 32.58 0.00 0.00 3.01
8118 11737 1.750399 CTTCCATGGGCCCAAGTCG 60.750 63.158 32.58 17.52 0.00 4.18
8119 11738 2.196997 CTTCCATGGGCCCAAGTCGA 62.197 60.000 32.58 18.59 0.00 4.20
8120 11739 1.570857 TTCCATGGGCCCAAGTCGAT 61.571 55.000 32.58 8.38 0.00 3.59
8121 11740 1.526917 CCATGGGCCCAAGTCGATC 60.527 63.158 32.58 0.00 0.00 3.69
8123 11742 0.107017 CATGGGCCCAAGTCGATCTT 60.107 55.000 32.58 5.53 36.75 2.40
8124 11743 0.181350 ATGGGCCCAAGTCGATCTTC 59.819 55.000 32.58 0.00 33.63 2.87
8125 11744 0.909610 TGGGCCCAAGTCGATCTTCT 60.910 55.000 26.33 0.00 33.63 2.85
8127 11746 1.202545 GGGCCCAAGTCGATCTTCTAC 60.203 57.143 19.95 0.00 33.63 2.59
8128 11747 1.757699 GGCCCAAGTCGATCTTCTACT 59.242 52.381 0.00 0.00 33.63 2.57
8129 11748 2.168728 GGCCCAAGTCGATCTTCTACTT 59.831 50.000 0.00 0.00 33.37 2.24
8130 11749 3.369576 GGCCCAAGTCGATCTTCTACTTT 60.370 47.826 0.00 0.00 31.12 2.66
8133 11752 5.291371 GCCCAAGTCGATCTTCTACTTTTAC 59.709 44.000 0.00 0.00 31.12 2.01
8134 11753 6.631962 CCCAAGTCGATCTTCTACTTTTACT 58.368 40.000 0.00 0.00 31.12 2.24
8135 11754 6.752815 CCCAAGTCGATCTTCTACTTTTACTC 59.247 42.308 0.00 0.00 31.12 2.59
8136 11755 6.752815 CCAAGTCGATCTTCTACTTTTACTCC 59.247 42.308 0.00 0.00 31.12 3.85
8137 11756 7.313646 CAAGTCGATCTTCTACTTTTACTCCA 58.686 38.462 0.00 0.00 31.12 3.86
8138 11757 6.854778 AGTCGATCTTCTACTTTTACTCCAC 58.145 40.000 0.00 0.00 0.00 4.02
8140 11759 7.122948 AGTCGATCTTCTACTTTTACTCCACAT 59.877 37.037 0.00 0.00 0.00 3.21
8141 11760 8.404000 GTCGATCTTCTACTTTTACTCCACATA 58.596 37.037 0.00 0.00 0.00 2.29
8144 11763 7.179076 TCTTCTACTTTTACTCCACATACCC 57.821 40.000 0.00 0.00 0.00 3.69
8145 11764 6.727231 TCTTCTACTTTTACTCCACATACCCA 59.273 38.462 0.00 0.00 0.00 4.51
8146 11765 6.540438 TCTACTTTTACTCCACATACCCAG 57.460 41.667 0.00 0.00 0.00 4.45
8147 11766 3.951663 ACTTTTACTCCACATACCCAGC 58.048 45.455 0.00 0.00 0.00 4.85
8186 11923 6.851330 AGCTTAATAATTGCGTCGAAATAAGC 59.149 34.615 17.87 17.87 41.67 3.09
8192 11929 6.604735 AATTGCGTCGAAATAAGCTCTAAT 57.395 33.333 0.00 0.00 0.00 1.73
8206 11943 4.036518 AGCTCTAATGAGGGAAGTGATGT 58.963 43.478 0.00 0.00 40.53 3.06
8220 11957 4.744795 AGTGATGTGGTTATCTCTCACC 57.255 45.455 0.00 0.00 34.88 4.02
8221 11958 3.131223 AGTGATGTGGTTATCTCTCACCG 59.869 47.826 0.00 0.00 35.60 4.94
8243 11980 0.956633 TAGGCCCATAGCGACGTAAG 59.043 55.000 0.00 0.00 45.17 2.34
8244 11981 1.954651 GGCCCATAGCGACGTAAGC 60.955 63.158 7.34 7.34 45.17 3.09
8277 12015 3.672503 GGAGGCCCAACCCCACAT 61.673 66.667 0.00 0.00 40.58 3.21
8278 12016 2.445155 GAGGCCCAACCCCACATT 59.555 61.111 0.00 0.00 40.58 2.71
8279 12017 1.229177 GAGGCCCAACCCCACATTT 60.229 57.895 0.00 0.00 40.58 2.32
8280 12018 0.040499 GAGGCCCAACCCCACATTTA 59.960 55.000 0.00 0.00 40.58 1.40
8281 12019 0.715987 AGGCCCAACCCCACATTTAT 59.284 50.000 0.00 0.00 40.58 1.40
8282 12020 1.080329 AGGCCCAACCCCACATTTATT 59.920 47.619 0.00 0.00 40.58 1.40
8283 12021 1.912731 GGCCCAACCCCACATTTATTT 59.087 47.619 0.00 0.00 0.00 1.40
8284 12022 2.307392 GGCCCAACCCCACATTTATTTT 59.693 45.455 0.00 0.00 0.00 1.82
8285 12023 3.245087 GGCCCAACCCCACATTTATTTTT 60.245 43.478 0.00 0.00 0.00 1.94
8286 12024 4.019231 GGCCCAACCCCACATTTATTTTTA 60.019 41.667 0.00 0.00 0.00 1.52
8287 12025 5.339612 GGCCCAACCCCACATTTATTTTTAT 60.340 40.000 0.00 0.00 0.00 1.40
8288 12026 5.588246 GCCCAACCCCACATTTATTTTTATG 59.412 40.000 0.00 0.00 0.00 1.90
8289 12027 6.118852 CCCAACCCCACATTTATTTTTATGG 58.881 40.000 0.00 0.00 0.00 2.74
8290 12028 6.118852 CCAACCCCACATTTATTTTTATGGG 58.881 40.000 0.00 0.00 45.48 4.00
8298 12036 9.777297 CCACATTTATTTTTATGGGATAAAGGG 57.223 33.333 0.00 0.00 36.23 3.95
8310 12048 6.538945 TGGGATAAAGGGAGTTTTTATTGC 57.461 37.500 0.00 0.00 32.42 3.56
8311 12049 6.019748 TGGGATAAAGGGAGTTTTTATTGCA 58.980 36.000 0.00 0.00 32.42 4.08
8312 12050 6.498651 TGGGATAAAGGGAGTTTTTATTGCAA 59.501 34.615 0.00 0.00 32.42 4.08
8313 12051 7.016661 TGGGATAAAGGGAGTTTTTATTGCAAA 59.983 33.333 1.71 0.00 32.42 3.68
8314 12052 8.046708 GGGATAAAGGGAGTTTTTATTGCAAAT 58.953 33.333 1.71 0.00 32.42 2.32
8315 12053 9.448438 GGATAAAGGGAGTTTTTATTGCAAATT 57.552 29.630 1.71 0.00 32.42 1.82
8330 12068 9.991388 TTATTGCAAATTTATAGTGTTACGGTC 57.009 29.630 1.71 0.00 0.00 4.79
8331 12069 6.097156 TGCAAATTTATAGTGTTACGGTCG 57.903 37.500 0.00 0.00 0.00 4.79
8332 12070 5.868258 TGCAAATTTATAGTGTTACGGTCGA 59.132 36.000 0.00 0.00 0.00 4.20
8333 12071 6.035220 TGCAAATTTATAGTGTTACGGTCGAG 59.965 38.462 0.00 0.00 0.00 4.04
8334 12072 6.254157 GCAAATTTATAGTGTTACGGTCGAGA 59.746 38.462 0.00 0.00 0.00 4.04
8335 12073 7.514747 GCAAATTTATAGTGTTACGGTCGAGAG 60.515 40.741 0.00 0.00 0.00 3.20
8336 12074 6.932356 ATTTATAGTGTTACGGTCGAGAGA 57.068 37.500 0.00 0.00 38.16 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.748630 GTGCAAAACCAAGAGAAAAGTAAGG 59.251 40.000 0.00 0.00 0.00 2.69
166 168 4.828072 TTTCTAGGAAGGAAGAAGAGGC 57.172 45.455 0.00 0.00 33.49 4.70
188 195 1.890552 AGGCTCCCTCATCAACATCT 58.109 50.000 0.00 0.00 0.00 2.90
238 245 4.811557 AGATTATTGTAAGCTGCGAGAACC 59.188 41.667 0.00 0.00 0.00 3.62
320 327 4.510038 AATTGCAACAACCAGATGAGAC 57.490 40.909 0.00 0.00 0.00 3.36
339 346 1.840635 GCTCCCCAGTCTCCAGTTAAT 59.159 52.381 0.00 0.00 0.00 1.40
373 381 5.065218 CAGTGACAGACATAATTTAGGGCAC 59.935 44.000 0.00 0.00 0.00 5.01
380 388 9.671279 TGAACATATCAGTGACAGACATAATTT 57.329 29.630 0.00 0.00 33.04 1.82
411 419 1.736645 CGTTACCTGACACGCCCAG 60.737 63.158 0.00 0.00 0.00 4.45
416 424 2.531927 TAGCGGCGTTACCTGACACG 62.532 60.000 9.37 0.00 39.49 4.49
452 460 0.904649 ACTCCGCTGATCATGTTCCA 59.095 50.000 0.00 0.00 0.00 3.53
459 467 2.289631 ACATCAACAACTCCGCTGATCA 60.290 45.455 0.00 0.00 0.00 2.92
470 478 6.017109 AGGTACATCTCAAACACATCAACAAC 60.017 38.462 0.00 0.00 0.00 3.32
474 482 4.455533 GCAGGTACATCTCAAACACATCAA 59.544 41.667 0.00 0.00 0.00 2.57
508 516 6.149640 GGGAGTAGTTCAGAAGTTCAAATTCC 59.850 42.308 5.50 5.76 0.00 3.01
518 526 4.081917 GGAACAGAGGGAGTAGTTCAGAAG 60.082 50.000 0.00 0.00 41.49 2.85
530 538 5.011738 CGGCTTATATTTAGGAACAGAGGGA 59.988 44.000 0.00 0.00 0.00 4.20
531 539 5.238583 CGGCTTATATTTAGGAACAGAGGG 58.761 45.833 0.00 0.00 0.00 4.30
532 540 5.221661 ACCGGCTTATATTTAGGAACAGAGG 60.222 44.000 0.00 0.00 0.00 3.69
533 541 5.855045 ACCGGCTTATATTTAGGAACAGAG 58.145 41.667 0.00 0.00 0.00 3.35
535 543 6.292703 CGAAACCGGCTTATATTTAGGAACAG 60.293 42.308 0.00 0.00 0.00 3.16
536 544 5.524646 CGAAACCGGCTTATATTTAGGAACA 59.475 40.000 0.00 0.00 0.00 3.18
538 546 5.754890 GTCGAAACCGGCTTATATTTAGGAA 59.245 40.000 0.00 0.00 0.00 3.36
539 547 5.163426 TGTCGAAACCGGCTTATATTTAGGA 60.163 40.000 0.00 0.00 32.05 2.94
540 548 5.051816 TGTCGAAACCGGCTTATATTTAGG 58.948 41.667 0.00 0.00 32.05 2.69
541 549 6.592798 TTGTCGAAACCGGCTTATATTTAG 57.407 37.500 0.00 0.00 32.05 1.85
542 550 6.981762 TTTGTCGAAACCGGCTTATATTTA 57.018 33.333 0.00 0.00 32.05 1.40
543 551 5.883503 TTTGTCGAAACCGGCTTATATTT 57.116 34.783 0.00 0.00 32.05 1.40
544 552 5.633927 GTTTTGTCGAAACCGGCTTATATT 58.366 37.500 0.00 0.00 41.43 1.28
545 553 4.201744 CGTTTTGTCGAAACCGGCTTATAT 60.202 41.667 0.00 0.00 43.80 0.86
546 554 3.123284 CGTTTTGTCGAAACCGGCTTATA 59.877 43.478 0.00 0.00 43.80 0.98
547 555 2.096119 CGTTTTGTCGAAACCGGCTTAT 60.096 45.455 0.00 0.00 43.80 1.73
548 556 1.261089 CGTTTTGTCGAAACCGGCTTA 59.739 47.619 0.00 0.00 43.80 3.09
549 557 0.028374 CGTTTTGTCGAAACCGGCTT 59.972 50.000 0.00 0.00 43.80 4.35
550 558 0.810823 TCGTTTTGTCGAAACCGGCT 60.811 50.000 0.00 0.00 43.80 5.52
551 559 0.655337 GTCGTTTTGTCGAAACCGGC 60.655 55.000 0.00 3.92 43.80 6.13
552 560 0.932399 AGTCGTTTTGTCGAAACCGG 59.068 50.000 0.00 0.00 43.80 5.28
553 561 2.724744 AAGTCGTTTTGTCGAAACCG 57.275 45.000 9.66 5.87 43.80 4.44
554 562 9.469239 CTAAATATAAGTCGTTTTGTCGAAACC 57.531 33.333 9.66 0.00 43.80 3.27
555 563 9.469239 CCTAAATATAAGTCGTTTTGTCGAAAC 57.531 33.333 5.70 5.70 43.36 2.78
556 564 9.421806 TCCTAAATATAAGTCGTTTTGTCGAAA 57.578 29.630 0.00 0.00 41.47 3.46
557 565 8.984891 TCCTAAATATAAGTCGTTTTGTCGAA 57.015 30.769 0.00 0.00 41.47 3.71
558 566 8.863049 GTTCCTAAATATAAGTCGTTTTGTCGA 58.137 33.333 0.00 0.00 37.51 4.20
559 567 7.837923 CGTTCCTAAATATAAGTCGTTTTGTCG 59.162 37.037 0.00 0.00 0.00 4.35
560 568 8.112449 CCGTTCCTAAATATAAGTCGTTTTGTC 58.888 37.037 0.00 0.00 0.00 3.18
561 569 7.818930 TCCGTTCCTAAATATAAGTCGTTTTGT 59.181 33.333 0.00 0.00 0.00 2.83
562 570 8.188531 TCCGTTCCTAAATATAAGTCGTTTTG 57.811 34.615 0.00 0.00 0.00 2.44
563 571 8.776376 TTCCGTTCCTAAATATAAGTCGTTTT 57.224 30.769 0.00 0.00 0.00 2.43
564 572 8.823818 CATTCCGTTCCTAAATATAAGTCGTTT 58.176 33.333 0.00 0.00 0.00 3.60
565 573 8.199449 TCATTCCGTTCCTAAATATAAGTCGTT 58.801 33.333 0.00 0.00 0.00 3.85
566 574 7.719483 TCATTCCGTTCCTAAATATAAGTCGT 58.281 34.615 0.00 0.00 0.00 4.34
567 575 8.080417 TCTCATTCCGTTCCTAAATATAAGTCG 58.920 37.037 0.00 0.00 0.00 4.18
568 576 9.413048 CTCTCATTCCGTTCCTAAATATAAGTC 57.587 37.037 0.00 0.00 0.00 3.01
569 577 8.368668 CCTCTCATTCCGTTCCTAAATATAAGT 58.631 37.037 0.00 0.00 0.00 2.24
570 578 8.585881 TCCTCTCATTCCGTTCCTAAATATAAG 58.414 37.037 0.00 0.00 0.00 1.73
571 579 8.486942 TCCTCTCATTCCGTTCCTAAATATAA 57.513 34.615 0.00 0.00 0.00 0.98
572 580 8.486942 TTCCTCTCATTCCGTTCCTAAATATA 57.513 34.615 0.00 0.00 0.00 0.86
573 581 6.996180 TCCTCTCATTCCGTTCCTAAATAT 57.004 37.500 0.00 0.00 0.00 1.28
574 582 6.801718 TTCCTCTCATTCCGTTCCTAAATA 57.198 37.500 0.00 0.00 0.00 1.40
575 583 5.693769 TTCCTCTCATTCCGTTCCTAAAT 57.306 39.130 0.00 0.00 0.00 1.40
576 584 5.492855 TTTCCTCTCATTCCGTTCCTAAA 57.507 39.130 0.00 0.00 0.00 1.85
577 585 5.492855 TTTTCCTCTCATTCCGTTCCTAA 57.507 39.130 0.00 0.00 0.00 2.69
578 586 5.693769 ATTTTCCTCTCATTCCGTTCCTA 57.306 39.130 0.00 0.00 0.00 2.94
579 587 4.576330 ATTTTCCTCTCATTCCGTTCCT 57.424 40.909 0.00 0.00 0.00 3.36
580 588 5.644977 AAATTTTCCTCTCATTCCGTTCC 57.355 39.130 0.00 0.00 0.00 3.62
581 589 6.248631 CGTAAATTTTCCTCTCATTCCGTTC 58.751 40.000 0.00 0.00 0.00 3.95
582 590 5.123344 CCGTAAATTTTCCTCTCATTCCGTT 59.877 40.000 0.00 0.00 0.00 4.44
583 591 4.634443 CCGTAAATTTTCCTCTCATTCCGT 59.366 41.667 0.00 0.00 0.00 4.69
584 592 4.495844 GCCGTAAATTTTCCTCTCATTCCG 60.496 45.833 0.00 0.00 0.00 4.30
585 593 4.398044 TGCCGTAAATTTTCCTCTCATTCC 59.602 41.667 0.00 0.00 0.00 3.01
586 594 5.354234 TCTGCCGTAAATTTTCCTCTCATTC 59.646 40.000 0.00 0.00 0.00 2.67
587 595 5.253330 TCTGCCGTAAATTTTCCTCTCATT 58.747 37.500 0.00 0.00 0.00 2.57
588 596 4.843728 TCTGCCGTAAATTTTCCTCTCAT 58.156 39.130 0.00 0.00 0.00 2.90
589 597 4.280436 TCTGCCGTAAATTTTCCTCTCA 57.720 40.909 0.00 0.00 0.00 3.27
590 598 4.142665 GGTTCTGCCGTAAATTTTCCTCTC 60.143 45.833 0.00 0.00 0.00 3.20
591 599 3.756963 GGTTCTGCCGTAAATTTTCCTCT 59.243 43.478 0.00 0.00 0.00 3.69
592 600 3.119602 GGGTTCTGCCGTAAATTTTCCTC 60.120 47.826 0.00 0.00 38.44 3.71
593 601 2.823747 GGGTTCTGCCGTAAATTTTCCT 59.176 45.455 0.00 0.00 38.44 3.36
594 602 2.559231 TGGGTTCTGCCGTAAATTTTCC 59.441 45.455 0.00 0.00 38.44 3.13
603 611 0.392998 CATAGCTTGGGTTCTGCCGT 60.393 55.000 0.00 0.00 38.44 5.68
644 660 8.273605 ACTACTAGAGGCAGTAACATAGTACTT 58.726 37.037 0.00 0.00 31.78 2.24
659 682 7.493367 ACACATTTTAGATCACTACTAGAGGC 58.507 38.462 0.00 0.00 0.00 4.70
718 924 9.995003 ATGCTCCATGTTTTCATAAACTTTTTA 57.005 25.926 0.00 0.00 43.25 1.52
735 945 0.533491 CCAACCCAACATGCTCCATG 59.467 55.000 3.80 3.80 46.18 3.66
737 947 0.827089 CACCAACCCAACATGCTCCA 60.827 55.000 0.00 0.00 0.00 3.86
742 952 1.068434 GGACAACACCAACCCAACATG 59.932 52.381 0.00 0.00 0.00 3.21
853 1064 9.020731 ACTTTTTCAGTAAGAACCTCTCAAAAA 57.979 29.630 0.00 0.00 35.56 1.94
855 1066 8.458843 CAACTTTTTCAGTAAGAACCTCTCAAA 58.541 33.333 0.00 0.00 35.56 2.69
856 1067 7.610305 ACAACTTTTTCAGTAAGAACCTCTCAA 59.390 33.333 0.00 0.00 35.56 3.02
857 1068 7.065803 CACAACTTTTTCAGTAAGAACCTCTCA 59.934 37.037 0.00 0.00 35.56 3.27
859 1070 6.318900 CCACAACTTTTTCAGTAAGAACCTCT 59.681 38.462 0.00 0.00 35.56 3.69
860 1071 6.317893 TCCACAACTTTTTCAGTAAGAACCTC 59.682 38.462 0.00 0.00 35.56 3.85
862 1073 6.445357 TCCACAACTTTTTCAGTAAGAACC 57.555 37.500 0.00 0.00 35.56 3.62
863 1074 8.807581 CATTTCCACAACTTTTTCAGTAAGAAC 58.192 33.333 0.00 0.00 35.56 3.01
896 1110 1.265236 CCAGCACCATTTTGGGCTAA 58.735 50.000 8.55 0.00 43.37 3.09
997 1212 3.707189 GAGGGGAGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
1015 1230 1.212935 CCATGGAACCCTAGACCAAGG 59.787 57.143 5.56 0.00 36.47 3.61
1016 1231 2.171448 CTCCATGGAACCCTAGACCAAG 59.829 54.545 17.00 0.00 37.24 3.61
1017 1232 2.196595 CTCCATGGAACCCTAGACCAA 58.803 52.381 17.00 0.00 37.24 3.67
1021 1236 0.044092 TGGCTCCATGGAACCCTAGA 59.956 55.000 27.80 9.54 29.74 2.43
1308 1817 6.258160 GCTTGCTTTCAAATTCGAGCTAATA 58.742 36.000 0.00 0.00 36.16 0.98
1375 1884 5.634020 GTGTATGTCCTGTGAAGTTGAGTAC 59.366 44.000 0.00 0.00 0.00 2.73
1539 2279 3.010138 ACAGCCAAAAGGCAGGACTTATA 59.990 43.478 9.42 0.00 37.35 0.98
1697 2537 4.159135 CCAGGACTATCAAAAGCAGCAAAT 59.841 41.667 0.00 0.00 0.00 2.32
1809 2649 4.677378 GGATAGAATCGATTGTGACAGTCG 59.323 45.833 22.08 22.08 43.22 4.18
1929 2769 5.972973 CACACATATTTCGTTCATTGGATGG 59.027 40.000 0.00 0.00 0.00 3.51
1960 2800 7.654022 TGTTCTAAAACCAGTCAAGGAATTT 57.346 32.000 0.00 0.00 34.28 1.82
2486 3339 8.370940 TCATGTAACAAAATGGCCTTTCAAATA 58.629 29.630 3.32 0.00 0.00 1.40
2703 3556 9.770097 TTCACATTTCCTTTATGCATTTGTTAA 57.230 25.926 3.54 0.00 0.00 2.01
2727 3580 4.786609 GCAAAATCGATCCTCGTCCATTTC 60.787 45.833 0.00 0.00 41.35 2.17
2728 3581 3.065371 GCAAAATCGATCCTCGTCCATTT 59.935 43.478 0.00 0.00 41.35 2.32
2985 3867 8.905702 GTTGCATAAAACTGTATCTTTGAACAG 58.094 33.333 1.10 1.10 46.84 3.16
2986 3868 8.629158 AGTTGCATAAAACTGTATCTTTGAACA 58.371 29.630 0.00 0.00 38.95 3.18
2987 3869 9.463443 AAGTTGCATAAAACTGTATCTTTGAAC 57.537 29.630 0.00 0.00 40.28 3.18
2988 3870 9.462174 CAAGTTGCATAAAACTGTATCTTTGAA 57.538 29.630 0.00 0.00 40.28 2.69
2989 3871 8.629158 ACAAGTTGCATAAAACTGTATCTTTGA 58.371 29.630 1.81 0.00 40.28 2.69
2990 3872 8.801715 ACAAGTTGCATAAAACTGTATCTTTG 57.198 30.769 1.81 0.00 40.28 2.77
2991 3873 8.629158 TGACAAGTTGCATAAAACTGTATCTTT 58.371 29.630 1.81 0.00 40.28 2.52
2992 3874 8.165239 TGACAAGTTGCATAAAACTGTATCTT 57.835 30.769 1.81 0.00 40.28 2.40
2993 3875 7.661437 TCTGACAAGTTGCATAAAACTGTATCT 59.339 33.333 1.81 0.00 40.28 1.98
2994 3876 7.806690 TCTGACAAGTTGCATAAAACTGTATC 58.193 34.615 1.81 0.00 40.28 2.24
2995 3877 7.744087 TCTGACAAGTTGCATAAAACTGTAT 57.256 32.000 1.81 0.00 40.28 2.29
2996 3878 7.744087 ATCTGACAAGTTGCATAAAACTGTA 57.256 32.000 1.81 0.00 40.28 2.74
2997 3879 6.639632 ATCTGACAAGTTGCATAAAACTGT 57.360 33.333 1.81 0.00 40.28 3.55
3001 3883 9.734620 GCATATAATCTGACAAGTTGCATAAAA 57.265 29.630 1.81 0.00 0.00 1.52
3002 3884 9.123902 AGCATATAATCTGACAAGTTGCATAAA 57.876 29.630 1.81 0.00 0.00 1.40
3003 3885 8.562052 CAGCATATAATCTGACAAGTTGCATAA 58.438 33.333 1.81 0.00 32.26 1.90
3004 3886 7.308169 GCAGCATATAATCTGACAAGTTGCATA 60.308 37.037 1.81 0.00 32.26 3.14
3005 3887 6.514541 GCAGCATATAATCTGACAAGTTGCAT 60.515 38.462 1.81 0.00 32.26 3.96
3006 3888 5.220912 GCAGCATATAATCTGACAAGTTGCA 60.221 40.000 1.81 1.35 32.26 4.08
3007 3889 5.008415 AGCAGCATATAATCTGACAAGTTGC 59.992 40.000 1.81 0.00 32.26 4.17
3008 3890 6.037940 ACAGCAGCATATAATCTGACAAGTTG 59.962 38.462 0.00 0.00 32.26 3.16
3009 3891 6.118170 ACAGCAGCATATAATCTGACAAGTT 58.882 36.000 8.32 0.00 32.26 2.66
3010 3892 5.678583 ACAGCAGCATATAATCTGACAAGT 58.321 37.500 8.32 0.00 32.26 3.16
3057 3939 6.096987 TCAACTATCAGGGTATGAAGAGTCAC 59.903 42.308 0.00 0.00 42.53 3.67
3232 4123 3.717400 TCTCATAAGTGGAGATGACGC 57.283 47.619 0.00 0.00 36.52 5.19
3392 4283 4.789807 AGTAGCATGGCATCTTCATCTTT 58.210 39.130 0.00 0.00 0.00 2.52
3530 4421 6.279123 CAGCAAGCACTATCTAAAGAGATCA 58.721 40.000 0.00 0.00 41.75 2.92
3566 4457 5.869344 TCAATCAAACCTGATCAAGTCTACG 59.131 40.000 0.00 0.00 41.66 3.51
3683 4574 4.882671 ACAAGCAGAGCATATTTTACCG 57.117 40.909 0.00 0.00 0.00 4.02
3718 4613 7.928307 TCAGATTAAGTTTGCTGCTATCTTT 57.072 32.000 11.51 0.00 0.00 2.52
3728 4623 3.788163 GCGAGCATTCAGATTAAGTTTGC 59.212 43.478 0.00 0.00 0.00 3.68
3730 4625 6.595772 CTAGCGAGCATTCAGATTAAGTTT 57.404 37.500 0.00 0.00 0.00 2.66
3782 4677 1.808945 GCTGTTGAGTCCTGTTCATGG 59.191 52.381 0.00 0.00 0.00 3.66
3926 4832 2.088423 AGAAGAGTCTACCACAGAGCG 58.912 52.381 0.00 0.00 32.51 5.03
3944 4859 8.704849 TTCCTTTTTATTCTCACCATCAAAGA 57.295 30.769 0.00 0.00 0.00 2.52
4219 5134 7.158697 TGCTATAGCTTGACTTAAACAGTTGA 58.841 34.615 24.61 0.00 42.66 3.18
4346 5263 4.039852 TGTGTTGCACTACCATACTCAAGA 59.960 41.667 0.00 0.00 35.11 3.02
4519 5436 1.000843 TCGACTGGAACACATGACAGG 59.999 52.381 0.00 0.00 35.34 4.00
4688 5606 8.750298 AGAGAACTAAATCAAGAAGTAATCGGA 58.250 33.333 0.00 0.00 0.00 4.55
4789 5715 6.774354 TTTTCATTACGGTAGACTCAACAC 57.226 37.500 0.00 0.00 0.00 3.32
4886 5840 4.096081 GTCCATGGATTGAAAGCAGAAGAG 59.904 45.833 19.62 0.00 0.00 2.85
4917 5871 6.435430 TGTGGTTCTACATAATGTTGCATC 57.565 37.500 0.00 0.00 0.00 3.91
5037 7806 3.007182 AGTGGAAAGCATGAAACATTGGG 59.993 43.478 0.00 0.00 0.00 4.12
5131 7917 2.319025 TGATGTAGGGAGTGTGGTGA 57.681 50.000 0.00 0.00 0.00 4.02
5172 7958 5.579511 ACACGTGCAAAGGTACAAGATATAC 59.420 40.000 17.22 0.00 0.00 1.47
5457 8245 2.083774 GCAGAACCAATGGAATCGACA 58.916 47.619 6.16 0.00 0.00 4.35
5558 8346 5.607939 TCAAACTACAAGTCAGACCAGAA 57.392 39.130 0.00 0.00 0.00 3.02
5587 8375 2.686558 ACACGCTGCTTACATGTTTG 57.313 45.000 2.30 0.00 0.00 2.93
5686 8474 9.859427 CTTCAAGGCTGATGATACAAAAATAAA 57.141 29.630 0.00 0.00 0.00 1.40
5701 8489 2.235650 CTCCATGAGACTTCAAGGCTGA 59.764 50.000 0.00 0.00 41.03 4.26
5854 8642 5.339008 TGTAGCTGTAATTGTCTAGTGGG 57.661 43.478 0.00 0.00 0.00 4.61
5870 8660 6.537453 TGCTTTAGAAGAGATCTTGTAGCT 57.463 37.500 12.85 0.00 39.71 3.32
5959 8749 2.292016 TGGTGACTGGTTTTATTGCACG 59.708 45.455 0.00 0.00 0.00 5.34
5962 8752 5.163652 GGTATCTGGTGACTGGTTTTATTGC 60.164 44.000 0.00 0.00 0.00 3.56
6153 8944 4.518970 AGTTCATCCACAACATAACCACAC 59.481 41.667 0.00 0.00 0.00 3.82
6326 9117 4.142790 GAGTTCCATATACTCGTCAGGGA 58.857 47.826 0.00 0.00 33.39 4.20
6413 9205 3.640029 GTCTTATATTGTGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
6425 9217 5.978878 AGCTCGCAAAATCGTCTTATATTG 58.021 37.500 0.00 0.00 0.00 1.90
6437 9229 5.567138 AAAGCACTATTAGCTCGCAAAAT 57.433 34.783 0.00 0.00 42.53 1.82
6444 9236 6.458888 GGGATGTTGAAAAGCACTATTAGCTC 60.459 42.308 0.00 0.00 42.53 4.09
6450 9242 4.322057 AGGGGATGTTGAAAAGCACTAT 57.678 40.909 0.00 0.00 0.00 2.12
6524 9363 4.542662 CACTCATGCAACCATAAGCTAC 57.457 45.455 0.00 0.00 0.00 3.58
6566 9417 5.171339 AGAAATGAGGACACTATTGCTGT 57.829 39.130 0.00 0.00 0.00 4.40
6643 9494 3.214328 GCTCCAATTACGGGAATGATGT 58.786 45.455 0.00 0.00 33.11 3.06
6709 9560 6.979238 AGTAAGAACAGTACTGAATATTCGCC 59.021 38.462 29.30 13.68 30.52 5.54
6890 9757 3.865011 TTCACATCTCTGAGCTCTCAC 57.135 47.619 16.19 0.00 35.46 3.51
6891 9758 4.021916 TCATTCACATCTCTGAGCTCTCA 58.978 43.478 16.19 0.00 38.06 3.27
6898 9765 1.137675 CGGGCTCATTCACATCTCTGA 59.862 52.381 0.00 0.00 0.00 3.27
6907 9774 1.218047 CGTCTTCCGGGCTCATTCA 59.782 57.895 0.00 0.00 0.00 2.57
6947 9814 4.038763 CCTCGTATAACAGGTTCTATGGCA 59.961 45.833 0.00 0.00 0.00 4.92
6963 9830 1.892862 CGACTCCCGAGCCTCGTAT 60.893 63.158 13.83 0.00 41.76 3.06
6964 9831 2.513204 CGACTCCCGAGCCTCGTA 60.513 66.667 13.83 0.00 41.76 3.43
7005 9872 0.740868 ATGCTCAACGGATGACCACG 60.741 55.000 0.00 0.00 33.47 4.94
7031 9899 0.870393 ATGCGTGAACACTCTGCTTG 59.130 50.000 3.51 0.00 0.00 4.01
7136 10004 2.684881 AGGCTAATCACATCTTTTGCCG 59.315 45.455 0.00 0.00 44.86 5.69
7147 10015 4.946784 ATGTCACGAAAAGGCTAATCAC 57.053 40.909 0.00 0.00 0.00 3.06
7197 10065 1.120530 GGTGCCTCGAGGAATAGGAA 58.879 55.000 35.69 7.52 37.39 3.36
7199 10067 1.048724 TGGGTGCCTCGAGGAATAGG 61.049 60.000 35.69 8.91 37.39 2.57
7200 10068 0.105039 GTGGGTGCCTCGAGGAATAG 59.895 60.000 35.69 8.57 37.39 1.73
7201 10069 0.325296 AGTGGGTGCCTCGAGGAATA 60.325 55.000 35.69 17.06 37.39 1.75
7212 10545 1.443872 CGACTACACGAGTGGGTGC 60.444 63.158 8.19 1.41 41.65 5.01
7226 10559 3.374402 CCGGCTGGTCACTCGACT 61.374 66.667 2.29 0.00 42.21 4.18
7241 10574 2.317609 CGCGCCAAATAGGATCCCG 61.318 63.158 8.55 3.87 41.22 5.14
7260 10593 3.627952 TCGCTAACCAACGGCCCA 61.628 61.111 0.00 0.00 0.00 5.36
7290 10623 2.556840 TATGCAGCAGGAACCCAGCC 62.557 60.000 0.00 0.00 36.67 4.85
7291 10624 1.077501 TATGCAGCAGGAACCCAGC 60.078 57.895 0.00 0.00 36.23 4.85
7296 10629 1.201921 CGAAACGTATGCAGCAGGAAC 60.202 52.381 0.00 0.00 0.00 3.62
7300 10633 1.060937 GCCGAAACGTATGCAGCAG 59.939 57.895 0.00 0.00 0.00 4.24
7301 10634 1.375396 AGCCGAAACGTATGCAGCA 60.375 52.632 0.00 0.00 0.00 4.41
7311 10644 0.891904 TTAGTTGGGCCAGCCGAAAC 60.892 55.000 17.45 11.89 35.64 2.78
7423 10797 9.993454 TGAAACATGTTCATGATTTCCAAATAA 57.007 25.926 12.39 6.20 0.00 1.40
7425 10799 8.905660 TTGAAACATGTTCATGATTTCCAAAT 57.094 26.923 12.39 0.00 0.00 2.32
7432 10806 9.327628 TCACAAATTTGAAACATGTTCATGATT 57.672 25.926 24.64 12.77 0.00 2.57
7435 10809 8.388853 TGTTCACAAATTTGAAACATGTTCATG 58.611 29.630 25.77 10.72 37.24 3.07
7620 10996 5.659463 TCAAGAAATGTTCACAAAAGTGGG 58.341 37.500 0.00 0.00 0.00 4.61
7621 10997 7.775397 ATTCAAGAAATGTTCACAAAAGTGG 57.225 32.000 0.00 0.00 0.00 4.00
7639 11015 5.886715 TGAAAAACATGCGTGAATTCAAG 57.113 34.783 14.17 16.00 0.00 3.02
7640 11016 6.312426 AGTTTGAAAAACATGCGTGAATTCAA 59.688 30.769 22.44 22.44 35.31 2.69
7641 11017 5.809562 AGTTTGAAAAACATGCGTGAATTCA 59.190 32.000 14.17 15.53 0.00 2.57
7642 11018 6.272698 AGTTTGAAAAACATGCGTGAATTC 57.727 33.333 14.17 13.28 0.00 2.17
7643 11019 6.075099 CGTAGTTTGAAAAACATGCGTGAATT 60.075 34.615 14.17 4.39 0.00 2.17
7644 11020 5.398122 CGTAGTTTGAAAAACATGCGTGAAT 59.602 36.000 14.17 0.00 0.00 2.57
7645 11021 4.731000 CGTAGTTTGAAAAACATGCGTGAA 59.269 37.500 14.17 0.00 0.00 3.18
7646 11022 4.201832 ACGTAGTTTGAAAAACATGCGTGA 60.202 37.500 14.17 0.00 37.78 4.35
7647 11023 4.032355 ACGTAGTTTGAAAAACATGCGTG 58.968 39.130 3.82 3.82 37.78 5.34
7648 11024 4.032355 CACGTAGTTTGAAAAACATGCGT 58.968 39.130 5.72 8.83 41.61 5.24
7649 11025 4.275662 TCACGTAGTTTGAAAAACATGCG 58.724 39.130 5.72 8.31 41.61 4.73
7650 11026 6.747659 AATCACGTAGTTTGAAAAACATGC 57.252 33.333 5.72 0.00 41.61 4.06
7677 11053 9.549509 GCGTATTCAAAAAGTGTTCACATATTA 57.450 29.630 5.74 0.00 0.00 0.98
7680 11056 6.073711 TCGCGTATTCAAAAAGTGTTCACATA 60.074 34.615 5.77 0.00 0.00 2.29
7683 11059 4.520078 TCGCGTATTCAAAAAGTGTTCAC 58.480 39.130 5.77 0.00 0.00 3.18
7690 11066 7.775729 ACTAAATGTTCGCGTATTCAAAAAG 57.224 32.000 5.77 0.00 0.00 2.27
7700 11076 7.781548 AGGAATATTTACTAAATGTTCGCGT 57.218 32.000 17.86 8.17 44.84 6.01
7757 11165 6.966435 ACTTTGAAAACAATGTTCACAAGG 57.034 33.333 17.84 17.84 34.78 3.61
7759 11167 7.439356 TCACAACTTTGAAAACAATGTTCACAA 59.561 29.630 0.00 6.47 34.78 3.33
7761 11169 7.344910 TCACAACTTTGAAAACAATGTTCAC 57.655 32.000 0.00 0.00 34.78 3.18
7762 11170 7.439356 TGTTCACAACTTTGAAAACAATGTTCA 59.561 29.630 0.00 0.00 37.24 3.18
7763 11171 7.791949 TGTTCACAACTTTGAAAACAATGTTC 58.208 30.769 0.00 0.00 37.24 3.18
7764 11172 7.721286 TGTTCACAACTTTGAAAACAATGTT 57.279 28.000 0.00 0.00 37.24 2.71
7765 11173 7.903995 ATGTTCACAACTTTGAAAACAATGT 57.096 28.000 13.77 0.00 38.51 2.71
7766 11174 9.609950 AAAATGTTCACAACTTTGAAAACAATG 57.390 25.926 13.77 0.00 38.51 2.82
7871 11280 9.898152 ATTACAAAAAGGTTCCAGAAATTCAAA 57.102 25.926 0.00 0.00 0.00 2.69
7872 11281 9.541143 GATTACAAAAAGGTTCCAGAAATTCAA 57.459 29.630 0.00 0.00 0.00 2.69
7873 11282 8.147704 GGATTACAAAAAGGTTCCAGAAATTCA 58.852 33.333 0.00 0.00 0.00 2.57
7874 11283 7.602644 GGGATTACAAAAAGGTTCCAGAAATTC 59.397 37.037 0.00 0.00 0.00 2.17
7875 11284 7.071824 TGGGATTACAAAAAGGTTCCAGAAATT 59.928 33.333 0.00 0.00 0.00 1.82
7877 11286 5.900123 TGGGATTACAAAAAGGTTCCAGAAA 59.100 36.000 0.00 0.00 0.00 2.52
7878 11287 5.459505 TGGGATTACAAAAAGGTTCCAGAA 58.540 37.500 0.00 0.00 0.00 3.02
7879 11288 5.068215 TGGGATTACAAAAAGGTTCCAGA 57.932 39.130 0.00 0.00 0.00 3.86
7880 11289 5.799827 TTGGGATTACAAAAAGGTTCCAG 57.200 39.130 0.00 0.00 0.00 3.86
7881 11290 6.755542 ATTTGGGATTACAAAAAGGTTCCA 57.244 33.333 0.00 0.00 42.91 3.53
7882 11291 9.733556 AATAATTTGGGATTACAAAAAGGTTCC 57.266 29.630 0.00 0.00 42.91 3.62
7961 11580 1.241315 CGGGACTGGACGCCATTTTT 61.241 55.000 0.00 0.00 30.82 1.94
7963 11582 1.546589 TACGGGACTGGACGCCATTT 61.547 55.000 0.00 0.00 30.82 2.32
7964 11583 1.546589 TTACGGGACTGGACGCCATT 61.547 55.000 0.00 0.00 30.82 3.16
7965 11584 1.546589 TTTACGGGACTGGACGCCAT 61.547 55.000 0.00 0.00 30.82 4.40
7966 11585 1.546589 ATTTACGGGACTGGACGCCA 61.547 55.000 0.00 0.00 0.00 5.69
7969 11588 3.059603 CCATTTACGGGACTGGACG 57.940 57.895 0.00 0.00 0.00 4.79
8012 11631 4.699522 AACGCACGCCCTCCCTTC 62.700 66.667 0.00 0.00 0.00 3.46
8026 11645 2.789203 GCTAGCGAACGAGCCAACG 61.789 63.158 0.00 0.00 38.49 4.10
8027 11646 1.084370 ATGCTAGCGAACGAGCCAAC 61.084 55.000 10.77 0.00 43.27 3.77
8029 11648 1.519234 CATGCTAGCGAACGAGCCA 60.519 57.895 10.77 0.00 43.27 4.75
8030 11649 2.875786 GCATGCTAGCGAACGAGCC 61.876 63.158 11.37 0.00 43.27 4.70
8031 11650 2.167219 TGCATGCTAGCGAACGAGC 61.167 57.895 20.33 7.94 44.10 5.03
8032 11651 1.633171 GTGCATGCTAGCGAACGAG 59.367 57.895 20.33 0.00 37.31 4.18
8034 11653 2.703409 GGTGCATGCTAGCGAACG 59.297 61.111 20.33 0.00 37.31 3.95
8035 11654 2.703409 CGGTGCATGCTAGCGAAC 59.297 61.111 26.48 13.75 41.14 3.95
8038 11657 4.228097 GTGCGGTGCATGCTAGCG 62.228 66.667 26.34 26.34 41.91 4.26
8039 11658 1.089481 TTAGTGCGGTGCATGCTAGC 61.089 55.000 20.33 20.24 41.91 3.42
8040 11659 1.368641 TTTAGTGCGGTGCATGCTAG 58.631 50.000 20.33 11.00 41.91 3.42
8041 11660 1.814793 TTTTAGTGCGGTGCATGCTA 58.185 45.000 20.33 2.15 41.91 3.49
8042 11661 1.176527 ATTTTAGTGCGGTGCATGCT 58.823 45.000 20.33 0.00 41.91 3.79
8043 11662 2.541588 CCTATTTTAGTGCGGTGCATGC 60.542 50.000 11.82 11.82 41.91 4.06
8045 11664 3.206150 CTCCTATTTTAGTGCGGTGCAT 58.794 45.455 0.00 0.00 41.91 3.96
8046 11665 2.627945 CTCCTATTTTAGTGCGGTGCA 58.372 47.619 0.00 0.00 35.60 4.57
8047 11666 1.330829 GCTCCTATTTTAGTGCGGTGC 59.669 52.381 0.00 0.00 0.00 5.01
8048 11667 2.866762 GAGCTCCTATTTTAGTGCGGTG 59.133 50.000 0.87 0.00 0.00 4.94
8050 11669 2.484889 GGAGCTCCTATTTTAGTGCGG 58.515 52.381 26.25 0.00 0.00 5.69
8052 11671 2.484889 CGGGAGCTCCTATTTTAGTGC 58.515 52.381 31.36 10.28 35.95 4.40
8053 11672 2.434702 ACCGGGAGCTCCTATTTTAGTG 59.565 50.000 31.36 11.86 35.95 2.74
8055 11674 2.698797 TCACCGGGAGCTCCTATTTTAG 59.301 50.000 31.36 15.04 35.95 1.85
8056 11675 2.433239 GTCACCGGGAGCTCCTATTTTA 59.567 50.000 31.36 11.00 35.95 1.52
8059 11678 1.049289 GGTCACCGGGAGCTCCTATT 61.049 60.000 31.36 13.28 40.87 1.73
8061 11680 2.043248 GGTCACCGGGAGCTCCTA 60.043 66.667 31.36 10.11 40.87 2.94
8062 11681 3.846405 TTGGTCACCGGGAGCTCCT 62.846 63.158 31.36 10.19 44.40 3.69
8065 11684 2.750350 CTTTGGTCACCGGGAGCT 59.250 61.111 18.71 0.00 44.40 4.09
8067 11686 0.391263 GTAGCTTTGGTCACCGGGAG 60.391 60.000 6.32 0.00 0.00 4.30
8068 11687 1.675219 GTAGCTTTGGTCACCGGGA 59.325 57.895 6.32 0.00 0.00 5.14
8069 11688 1.376812 GGTAGCTTTGGTCACCGGG 60.377 63.158 6.32 0.00 0.00 5.73
8070 11689 0.899720 TAGGTAGCTTTGGTCACCGG 59.100 55.000 0.00 0.00 36.14 5.28
8071 11690 2.936498 CAATAGGTAGCTTTGGTCACCG 59.064 50.000 0.00 0.00 36.14 4.94
8072 11691 3.951663 ACAATAGGTAGCTTTGGTCACC 58.048 45.455 0.00 0.00 0.00 4.02
8073 11692 5.001232 TCAACAATAGGTAGCTTTGGTCAC 58.999 41.667 0.00 0.00 0.00 3.67
8074 11693 5.235850 TCAACAATAGGTAGCTTTGGTCA 57.764 39.130 0.00 0.00 0.00 4.02
8075 11694 5.472137 TGTTCAACAATAGGTAGCTTTGGTC 59.528 40.000 0.00 0.00 0.00 4.02
8077 11696 5.473504 AGTGTTCAACAATAGGTAGCTTTGG 59.526 40.000 0.00 0.00 0.00 3.28
8079 11698 6.206829 GGAAGTGTTCAACAATAGGTAGCTTT 59.793 38.462 0.00 0.00 0.00 3.51
8080 11699 5.705905 GGAAGTGTTCAACAATAGGTAGCTT 59.294 40.000 0.00 0.00 0.00 3.74
8082 11701 5.001232 TGGAAGTGTTCAACAATAGGTAGC 58.999 41.667 0.00 0.00 0.00 3.58
8083 11702 6.094048 CCATGGAAGTGTTCAACAATAGGTAG 59.906 42.308 5.56 0.00 0.00 3.18
8084 11703 5.943416 CCATGGAAGTGTTCAACAATAGGTA 59.057 40.000 5.56 0.00 0.00 3.08
8086 11705 4.158394 CCCATGGAAGTGTTCAACAATAGG 59.842 45.833 15.22 0.00 0.00 2.57
8087 11706 4.380867 GCCCATGGAAGTGTTCAACAATAG 60.381 45.833 15.22 0.00 0.00 1.73
8088 11707 3.509575 GCCCATGGAAGTGTTCAACAATA 59.490 43.478 15.22 0.00 0.00 1.90
8089 11708 2.299867 GCCCATGGAAGTGTTCAACAAT 59.700 45.455 15.22 0.00 0.00 2.71
8090 11709 1.686052 GCCCATGGAAGTGTTCAACAA 59.314 47.619 15.22 0.00 0.00 2.83
8091 11710 1.327303 GCCCATGGAAGTGTTCAACA 58.673 50.000 15.22 0.00 0.00 3.33
8092 11711 0.603065 GGCCCATGGAAGTGTTCAAC 59.397 55.000 15.22 0.00 0.00 3.18
8093 11712 0.541764 GGGCCCATGGAAGTGTTCAA 60.542 55.000 19.95 0.00 0.00 2.69
8094 11713 1.076549 GGGCCCATGGAAGTGTTCA 59.923 57.895 19.95 0.00 0.00 3.18
8095 11714 0.541764 TTGGGCCCATGGAAGTGTTC 60.542 55.000 29.23 0.00 0.00 3.18
8099 11718 1.384191 GACTTGGGCCCATGGAAGT 59.616 57.895 34.29 29.53 0.00 3.01
8101 11720 1.570857 ATCGACTTGGGCCCATGGAA 61.571 55.000 34.29 22.01 0.00 3.53
8103 11722 1.526917 GATCGACTTGGGCCCATGG 60.527 63.158 34.29 27.11 0.00 3.66
8104 11723 0.107017 AAGATCGACTTGGGCCCATG 60.107 55.000 31.08 31.08 37.45 3.66
8106 11725 0.909610 AGAAGATCGACTTGGGCCCA 60.910 55.000 24.45 24.45 39.13 5.36
8107 11726 1.120530 TAGAAGATCGACTTGGGCCC 58.879 55.000 17.59 17.59 39.13 5.80
8108 11727 1.757699 AGTAGAAGATCGACTTGGGCC 59.242 52.381 0.00 0.00 39.13 5.80
8109 11728 3.528597 AAGTAGAAGATCGACTTGGGC 57.471 47.619 5.27 0.00 40.10 5.36
8110 11729 6.631962 AGTAAAAGTAGAAGATCGACTTGGG 58.368 40.000 6.63 0.00 40.59 4.12
8113 11732 7.039923 TGTGGAGTAAAAGTAGAAGATCGACTT 60.040 37.037 0.00 0.78 42.72 3.01
8115 11734 6.618811 TGTGGAGTAAAAGTAGAAGATCGAC 58.381 40.000 0.00 0.00 0.00 4.20
8116 11735 6.829229 TGTGGAGTAAAAGTAGAAGATCGA 57.171 37.500 0.00 0.00 0.00 3.59
8117 11736 7.648510 GGTATGTGGAGTAAAAGTAGAAGATCG 59.351 40.741 0.00 0.00 0.00 3.69
8118 11737 7.927092 GGGTATGTGGAGTAAAAGTAGAAGATC 59.073 40.741 0.00 0.00 0.00 2.75
8119 11738 7.402071 TGGGTATGTGGAGTAAAAGTAGAAGAT 59.598 37.037 0.00 0.00 0.00 2.40
8120 11739 6.727231 TGGGTATGTGGAGTAAAAGTAGAAGA 59.273 38.462 0.00 0.00 0.00 2.87
8121 11740 6.942976 TGGGTATGTGGAGTAAAAGTAGAAG 58.057 40.000 0.00 0.00 0.00 2.85
8123 11742 5.105064 GCTGGGTATGTGGAGTAAAAGTAGA 60.105 44.000 0.00 0.00 0.00 2.59
8124 11743 5.116882 GCTGGGTATGTGGAGTAAAAGTAG 58.883 45.833 0.00 0.00 0.00 2.57
8125 11744 4.382254 CGCTGGGTATGTGGAGTAAAAGTA 60.382 45.833 0.00 0.00 0.00 2.24
8127 11746 2.936498 CGCTGGGTATGTGGAGTAAAAG 59.064 50.000 0.00 0.00 0.00 2.27
8128 11747 2.937873 GCGCTGGGTATGTGGAGTAAAA 60.938 50.000 0.00 0.00 0.00 1.52
8129 11748 1.406341 GCGCTGGGTATGTGGAGTAAA 60.406 52.381 0.00 0.00 0.00 2.01
8130 11749 0.177141 GCGCTGGGTATGTGGAGTAA 59.823 55.000 0.00 0.00 0.00 2.24
8133 11752 2.203070 GGCGCTGGGTATGTGGAG 60.203 66.667 7.64 0.00 0.00 3.86
8134 11753 3.006133 TGGCGCTGGGTATGTGGA 61.006 61.111 7.64 0.00 0.00 4.02
8135 11754 2.819984 AAGTGGCGCTGGGTATGTGG 62.820 60.000 7.64 0.00 0.00 4.17
8136 11755 1.369091 GAAGTGGCGCTGGGTATGTG 61.369 60.000 7.64 0.00 0.00 3.21
8137 11756 1.078426 GAAGTGGCGCTGGGTATGT 60.078 57.895 7.64 0.00 0.00 2.29
8138 11757 0.464373 ATGAAGTGGCGCTGGGTATG 60.464 55.000 7.64 0.00 0.00 2.39
8140 11759 0.037590 AAATGAAGTGGCGCTGGGTA 59.962 50.000 7.64 0.00 0.00 3.69
8141 11760 1.228552 AAATGAAGTGGCGCTGGGT 60.229 52.632 7.64 0.00 0.00 4.51
8144 11763 0.455633 GCTCAAATGAAGTGGCGCTG 60.456 55.000 7.64 0.00 0.00 5.18
8145 11764 0.607489 AGCTCAAATGAAGTGGCGCT 60.607 50.000 7.64 0.00 0.00 5.92
8146 11765 0.242017 AAGCTCAAATGAAGTGGCGC 59.758 50.000 0.00 0.00 0.00 6.53
8147 11766 3.829886 TTAAGCTCAAATGAAGTGGCG 57.170 42.857 0.00 0.00 0.00 5.69
8186 11923 4.163078 ACCACATCACTTCCCTCATTAGAG 59.837 45.833 0.00 0.00 41.72 2.43
8192 11929 4.104086 AGATAACCACATCACTTCCCTCA 58.896 43.478 0.00 0.00 0.00 3.86
8206 11943 2.662866 CTACCCGGTGAGAGATAACCA 58.337 52.381 0.00 0.00 0.00 3.67
8233 11970 2.033550 CCTTATCTGAGCTTACGTCGCT 59.966 50.000 11.55 11.55 41.15 4.93
8243 11980 2.235898 CCTCCATAGGCCTTATCTGAGC 59.764 54.545 12.58 0.00 35.64 4.26
8284 12022 8.700973 GCAATAAAAACTCCCTTTATCCCATAA 58.299 33.333 0.00 0.00 30.41 1.90
8285 12023 7.841729 TGCAATAAAAACTCCCTTTATCCCATA 59.158 33.333 0.00 0.00 30.41 2.74
8286 12024 6.671779 TGCAATAAAAACTCCCTTTATCCCAT 59.328 34.615 0.00 0.00 30.41 4.00
8287 12025 6.019748 TGCAATAAAAACTCCCTTTATCCCA 58.980 36.000 0.00 0.00 30.41 4.37
8288 12026 6.538945 TGCAATAAAAACTCCCTTTATCCC 57.461 37.500 0.00 0.00 30.41 3.85
8289 12027 9.448438 AATTTGCAATAAAAACTCCCTTTATCC 57.552 29.630 0.00 0.00 30.41 2.59
8304 12042 9.991388 GACCGTAACACTATAAATTTGCAATAA 57.009 29.630 0.00 0.00 0.00 1.40
8305 12043 8.329583 CGACCGTAACACTATAAATTTGCAATA 58.670 33.333 0.00 0.00 0.00 1.90
8306 12044 7.064847 TCGACCGTAACACTATAAATTTGCAAT 59.935 33.333 0.00 0.00 0.00 3.56
8307 12045 6.368243 TCGACCGTAACACTATAAATTTGCAA 59.632 34.615 0.00 0.00 0.00 4.08
8308 12046 5.868258 TCGACCGTAACACTATAAATTTGCA 59.132 36.000 0.00 0.00 0.00 4.08
8309 12047 6.254157 TCTCGACCGTAACACTATAAATTTGC 59.746 38.462 0.00 0.00 0.00 3.68
8310 12048 7.699391 TCTCTCGACCGTAACACTATAAATTTG 59.301 37.037 0.00 0.00 0.00 2.32
8311 12049 7.699812 GTCTCTCGACCGTAACACTATAAATTT 59.300 37.037 0.00 0.00 33.98 1.82
8312 12050 7.192232 GTCTCTCGACCGTAACACTATAAATT 58.808 38.462 0.00 0.00 33.98 1.82
8313 12051 6.723282 GTCTCTCGACCGTAACACTATAAAT 58.277 40.000 0.00 0.00 33.98 1.40
8314 12052 6.111768 GTCTCTCGACCGTAACACTATAAA 57.888 41.667 0.00 0.00 33.98 1.40
8315 12053 5.725110 GTCTCTCGACCGTAACACTATAA 57.275 43.478 0.00 0.00 33.98 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.