Multiple sequence alignment - TraesCS5B01G510000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G510000 chr5B 100.000 4050 0 0 1001 5050 675879845 675883894 0.000000e+00 7480.0
1 TraesCS5B01G510000 chr5B 100.000 629 0 0 1 629 675878845 675879473 0.000000e+00 1162.0
2 TraesCS5B01G510000 chr5B 96.078 102 4 0 4949 5050 655681058 655681159 3.130000e-37 167.0
3 TraesCS5B01G510000 chr5B 83.077 65 6 3 4289 4348 491439285 491439221 3.000000e-03 54.7
4 TraesCS5B01G510000 chr5D 94.381 3328 119 32 1001 4294 535127476 535130769 0.000000e+00 5048.0
5 TraesCS5B01G510000 chr5D 88.660 582 31 12 4479 5050 535130852 535131408 0.000000e+00 676.0
6 TraesCS5B01G510000 chr5D 76.457 446 31 28 210 629 535127040 535127437 1.870000e-39 174.0
7 TraesCS5B01G510000 chr5D 95.960 99 4 0 4949 5047 341436094 341436192 1.460000e-35 161.0
8 TraesCS5B01G510000 chr5D 97.619 42 1 0 4380 4421 535130809 535130850 7.010000e-09 73.1
9 TraesCS5B01G510000 chr5D 100.000 28 0 0 4289 4316 213216825 213216852 9.000000e-03 52.8
10 TraesCS5B01G510000 chr4A 93.679 1851 79 16 2462 4294 636657350 636655520 0.000000e+00 2736.0
11 TraesCS5B01G510000 chr4A 93.913 1380 51 15 1023 2388 636658742 636657382 0.000000e+00 2052.0
12 TraesCS5B01G510000 chr4A 94.550 422 19 2 4629 5050 636655086 636654669 0.000000e+00 649.0
13 TraesCS5B01G510000 chr4A 80.044 456 37 26 195 619 636659203 636658771 6.400000e-74 289.0
14 TraesCS5B01G510000 chr4A 91.275 149 12 1 4465 4612 636655223 636655075 8.570000e-48 202.0
15 TraesCS5B01G510000 chr2A 98.039 102 2 0 4949 5050 123337195 123337094 1.440000e-40 178.0
16 TraesCS5B01G510000 chr1A 97.059 102 3 0 4949 5050 428882259 428882360 6.720000e-39 172.0
17 TraesCS5B01G510000 chr3D 96.078 102 4 0 4949 5050 564092737 564092838 3.130000e-37 167.0
18 TraesCS5B01G510000 chr3D 92.105 38 3 0 4281 4318 8779660 8779697 3.000000e-03 54.7
19 TraesCS5B01G510000 chr3D 92.308 39 2 1 4290 4328 74857591 74857628 3.000000e-03 54.7
20 TraesCS5B01G510000 chr7B 96.970 33 1 0 4291 4323 598294234 598294266 7.060000e-04 56.5
21 TraesCS5B01G510000 chr6A 90.000 40 4 0 4289 4328 458217877 458217838 9.000000e-03 52.8
22 TraesCS5B01G510000 chr4D 90.000 40 4 0 4289 4328 362903202 362903163 9.000000e-03 52.8
23 TraesCS5B01G510000 chr3B 90.000 40 4 0 4289 4328 198263501 198263462 9.000000e-03 52.8
24 TraesCS5B01G510000 chr3A 90.000 40 4 0 4289 4328 83253870 83253831 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G510000 chr5B 675878845 675883894 5049 False 4321.000 7480 100.00000 1 5050 2 chr5B.!!$F2 5049
1 TraesCS5B01G510000 chr5D 535127040 535131408 4368 False 1492.775 5048 89.27925 210 5050 4 chr5D.!!$F3 4840
2 TraesCS5B01G510000 chr4A 636654669 636659203 4534 True 1185.600 2736 90.69220 195 5050 5 chr4A.!!$R1 4855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.030369 CTCGCCTACGCCGTTAGATT 59.970 55.000 0.00 0.00 39.84 2.40 F
1515 1620 0.179056 ATATTCTTCCACCCGCACGG 60.179 55.000 1.02 1.02 37.81 4.94 F
2257 2372 0.312102 GCCTTGAACCAAGTGACTGC 59.688 55.000 6.04 0.00 39.58 4.40 F
2354 2469 1.141881 CGCGCTGTAAGATCCCACT 59.858 57.895 5.56 0.00 34.07 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1649 0.178924 CCATCCCATCCATTTCCCCC 60.179 60.0 0.00 0.0 0.0 5.40 R
2882 3007 2.486548 GCCGGCAATACAGAAGGGAATA 60.487 50.0 24.80 0.0 0.0 1.75 R
3704 3836 0.040067 GCTGGTTGTTGAAGAAGCCG 60.040 55.0 1.77 0.0 0.0 5.52 R
4313 4451 0.028374 CGTTTTGTCGAAACCGGCTT 59.972 50.0 0.00 0.0 43.8 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.099267 GCGATTACATGGTAGACAGCT 57.901 47.619 0.00 0.00 0.00 4.24
21 22 2.797156 GCGATTACATGGTAGACAGCTG 59.203 50.000 13.48 13.48 0.00 4.24
22 23 3.384668 CGATTACATGGTAGACAGCTGG 58.615 50.000 19.93 0.00 0.00 4.85
23 24 3.733337 GATTACATGGTAGACAGCTGGG 58.267 50.000 19.93 0.00 0.00 4.45
24 25 1.496060 TACATGGTAGACAGCTGGGG 58.504 55.000 19.93 0.00 0.00 4.96
25 26 1.153086 CATGGTAGACAGCTGGGGC 60.153 63.158 19.93 7.03 39.06 5.80
26 27 2.735772 ATGGTAGACAGCTGGGGCG 61.736 63.158 19.93 0.00 44.37 6.13
27 28 4.162690 GGTAGACAGCTGGGGCGG 62.163 72.222 19.93 0.00 44.37 6.13
28 29 4.162690 GTAGACAGCTGGGGCGGG 62.163 72.222 19.93 0.00 44.37 6.13
44 45 4.228567 GGGCCAGCTCTCGCCTAC 62.229 72.222 4.39 0.00 45.01 3.18
45 46 4.577246 GGCCAGCTCTCGCCTACG 62.577 72.222 0.00 0.00 42.21 3.51
47 48 4.577246 CCAGCTCTCGCCTACGCC 62.577 72.222 0.00 0.00 39.84 5.68
48 49 4.914420 CAGCTCTCGCCTACGCCG 62.914 72.222 0.00 0.00 39.84 6.46
50 51 4.493747 GCTCTCGCCTACGCCGTT 62.494 66.667 0.00 0.00 39.84 4.44
51 52 3.104766 CTCTCGCCTACGCCGTTA 58.895 61.111 0.00 0.00 39.84 3.18
52 53 1.009900 CTCTCGCCTACGCCGTTAG 60.010 63.158 0.00 0.00 39.84 2.34
53 54 1.434622 CTCTCGCCTACGCCGTTAGA 61.435 60.000 0.00 0.00 39.84 2.10
54 55 0.816825 TCTCGCCTACGCCGTTAGAT 60.817 55.000 0.00 0.00 39.84 1.98
55 56 0.030369 CTCGCCTACGCCGTTAGATT 59.970 55.000 0.00 0.00 39.84 2.40
56 57 0.457035 TCGCCTACGCCGTTAGATTT 59.543 50.000 0.00 0.00 39.84 2.17
57 58 1.135024 TCGCCTACGCCGTTAGATTTT 60.135 47.619 0.00 0.00 39.84 1.82
58 59 2.098934 TCGCCTACGCCGTTAGATTTTA 59.901 45.455 0.00 0.00 39.84 1.52
59 60 2.217167 CGCCTACGCCGTTAGATTTTAC 59.783 50.000 0.00 0.00 0.00 2.01
60 61 3.189285 GCCTACGCCGTTAGATTTTACA 58.811 45.455 0.00 0.00 0.00 2.41
61 62 3.244579 GCCTACGCCGTTAGATTTTACAG 59.755 47.826 0.00 0.00 0.00 2.74
62 63 4.427312 CCTACGCCGTTAGATTTTACAGT 58.573 43.478 0.00 0.00 0.00 3.55
63 64 4.266976 CCTACGCCGTTAGATTTTACAGTG 59.733 45.833 0.00 0.00 0.00 3.66
64 65 3.916761 ACGCCGTTAGATTTTACAGTGA 58.083 40.909 0.00 0.00 0.00 3.41
65 66 3.924686 ACGCCGTTAGATTTTACAGTGAG 59.075 43.478 0.00 0.00 0.00 3.51
66 67 4.171005 CGCCGTTAGATTTTACAGTGAGA 58.829 43.478 0.00 0.00 0.00 3.27
67 68 4.804139 CGCCGTTAGATTTTACAGTGAGAT 59.196 41.667 0.00 0.00 0.00 2.75
68 69 5.291128 CGCCGTTAGATTTTACAGTGAGATT 59.709 40.000 0.00 0.00 0.00 2.40
69 70 6.508088 CGCCGTTAGATTTTACAGTGAGATTC 60.508 42.308 0.00 0.00 0.00 2.52
70 71 6.508088 GCCGTTAGATTTTACAGTGAGATTCG 60.508 42.308 0.00 0.00 0.00 3.34
71 72 6.530534 CCGTTAGATTTTACAGTGAGATTCGT 59.469 38.462 0.00 0.00 0.00 3.85
72 73 7.384124 CGTTAGATTTTACAGTGAGATTCGTG 58.616 38.462 0.00 0.00 0.00 4.35
73 74 7.462856 CGTTAGATTTTACAGTGAGATTCGTGG 60.463 40.741 0.00 0.00 0.00 4.94
74 75 6.037786 AGATTTTACAGTGAGATTCGTGGA 57.962 37.500 0.00 0.00 0.00 4.02
75 76 6.102663 AGATTTTACAGTGAGATTCGTGGAG 58.897 40.000 0.00 0.00 0.00 3.86
76 77 5.462530 TTTTACAGTGAGATTCGTGGAGA 57.537 39.130 0.00 0.00 0.00 3.71
77 78 5.661056 TTTACAGTGAGATTCGTGGAGAT 57.339 39.130 0.00 0.00 0.00 2.75
78 79 5.661056 TTACAGTGAGATTCGTGGAGATT 57.339 39.130 0.00 0.00 0.00 2.40
79 80 6.769134 TTACAGTGAGATTCGTGGAGATTA 57.231 37.500 0.00 0.00 0.00 1.75
80 81 5.255710 ACAGTGAGATTCGTGGAGATTAG 57.744 43.478 0.00 0.00 0.00 1.73
81 82 4.707448 ACAGTGAGATTCGTGGAGATTAGT 59.293 41.667 0.00 0.00 0.00 2.24
82 83 5.886474 ACAGTGAGATTCGTGGAGATTAGTA 59.114 40.000 0.00 0.00 0.00 1.82
83 84 6.377429 ACAGTGAGATTCGTGGAGATTAGTAA 59.623 38.462 0.00 0.00 0.00 2.24
84 85 7.093902 ACAGTGAGATTCGTGGAGATTAGTAAA 60.094 37.037 0.00 0.00 0.00 2.01
85 86 7.759886 CAGTGAGATTCGTGGAGATTAGTAAAA 59.240 37.037 0.00 0.00 0.00 1.52
86 87 8.478877 AGTGAGATTCGTGGAGATTAGTAAAAT 58.521 33.333 0.00 0.00 0.00 1.82
87 88 8.756864 GTGAGATTCGTGGAGATTAGTAAAATC 58.243 37.037 0.00 0.00 0.00 2.17
88 89 7.926555 TGAGATTCGTGGAGATTAGTAAAATCC 59.073 37.037 8.98 8.98 0.00 3.01
89 90 6.924060 AGATTCGTGGAGATTAGTAAAATCCG 59.076 38.462 10.55 2.84 32.47 4.18
90 91 4.940463 TCGTGGAGATTAGTAAAATCCGG 58.060 43.478 0.00 0.00 32.47 5.14
91 92 4.646040 TCGTGGAGATTAGTAAAATCCGGA 59.354 41.667 6.61 6.61 32.47 5.14
92 93 5.127519 TCGTGGAGATTAGTAAAATCCGGAA 59.872 40.000 9.01 0.00 32.47 4.30
93 94 5.813672 CGTGGAGATTAGTAAAATCCGGAAA 59.186 40.000 9.01 0.00 32.47 3.13
94 95 6.314400 CGTGGAGATTAGTAAAATCCGGAAAA 59.686 38.462 9.01 0.00 32.47 2.29
95 96 7.465513 CGTGGAGATTAGTAAAATCCGGAAAAG 60.466 40.741 9.01 0.00 32.47 2.27
96 97 6.826741 TGGAGATTAGTAAAATCCGGAAAAGG 59.173 38.462 9.01 0.00 32.47 3.11
97 98 6.827251 GGAGATTAGTAAAATCCGGAAAAGGT 59.173 38.462 9.01 0.00 0.00 3.50
98 99 7.338703 GGAGATTAGTAAAATCCGGAAAAGGTT 59.661 37.037 9.01 0.00 0.00 3.50
99 100 8.645814 AGATTAGTAAAATCCGGAAAAGGTTT 57.354 30.769 9.01 0.05 0.00 3.27
100 101 9.085645 AGATTAGTAAAATCCGGAAAAGGTTTT 57.914 29.630 9.01 13.05 35.39 2.43
103 104 7.223260 AGTAAAATCCGGAAAAGGTTTTAGG 57.777 36.000 9.01 3.85 33.44 2.69
104 105 7.005902 AGTAAAATCCGGAAAAGGTTTTAGGA 58.994 34.615 9.01 11.85 39.61 2.94
105 106 6.734502 AAAATCCGGAAAAGGTTTTAGGAA 57.265 33.333 9.01 0.00 39.13 3.36
106 107 6.734502 AAATCCGGAAAAGGTTTTAGGAAA 57.265 33.333 9.01 0.00 39.13 3.13
107 108 6.734502 AATCCGGAAAAGGTTTTAGGAAAA 57.265 33.333 9.01 0.00 39.13 2.29
117 118 3.294102 GTTTTAGGAAAACGGTGCTTCG 58.706 45.455 0.00 0.00 41.04 3.79
118 119 1.515081 TTAGGAAAACGGTGCTTCGG 58.485 50.000 4.51 0.00 0.00 4.30
119 120 0.320946 TAGGAAAACGGTGCTTCGGG 60.321 55.000 4.51 0.00 0.00 5.14
120 121 1.895231 GGAAAACGGTGCTTCGGGT 60.895 57.895 4.51 0.00 0.00 5.28
121 122 1.281656 GAAAACGGTGCTTCGGGTG 59.718 57.895 4.51 0.00 0.00 4.61
122 123 1.153127 AAAACGGTGCTTCGGGTGA 60.153 52.632 4.51 0.00 0.00 4.02
123 124 1.441732 AAAACGGTGCTTCGGGTGAC 61.442 55.000 4.51 0.00 0.00 3.67
134 135 3.384532 GGGTGACCGACGGCCTAA 61.385 66.667 15.39 0.00 43.64 2.69
135 136 2.658422 GGTGACCGACGGCCTAAA 59.342 61.111 15.39 0.00 0.00 1.85
136 137 1.447314 GGTGACCGACGGCCTAAAG 60.447 63.158 15.39 0.00 0.00 1.85
137 138 1.447314 GTGACCGACGGCCTAAAGG 60.447 63.158 15.39 1.03 38.53 3.11
147 148 3.090532 CCTAAAGGCCGCCCTCCT 61.091 66.667 5.55 0.00 41.90 3.69
148 149 2.680370 CCTAAAGGCCGCCCTCCTT 61.680 63.158 5.55 0.00 45.31 3.36
149 150 1.153147 CTAAAGGCCGCCCTCCTTC 60.153 63.158 5.55 0.00 42.75 3.46
150 151 2.925162 CTAAAGGCCGCCCTCCTTCG 62.925 65.000 5.55 0.00 42.75 3.79
153 154 4.717313 GGCCGCCCTCCTTCGTTT 62.717 66.667 0.00 0.00 0.00 3.60
154 155 2.671963 GCCGCCCTCCTTCGTTTT 60.672 61.111 0.00 0.00 0.00 2.43
155 156 2.687805 GCCGCCCTCCTTCGTTTTC 61.688 63.158 0.00 0.00 0.00 2.29
156 157 1.302192 CCGCCCTCCTTCGTTTTCA 60.302 57.895 0.00 0.00 0.00 2.69
157 158 0.676782 CCGCCCTCCTTCGTTTTCAT 60.677 55.000 0.00 0.00 0.00 2.57
158 159 1.165270 CGCCCTCCTTCGTTTTCATT 58.835 50.000 0.00 0.00 0.00 2.57
159 160 1.130561 CGCCCTCCTTCGTTTTCATTC 59.869 52.381 0.00 0.00 0.00 2.67
160 161 2.437413 GCCCTCCTTCGTTTTCATTCT 58.563 47.619 0.00 0.00 0.00 2.40
161 162 2.420372 GCCCTCCTTCGTTTTCATTCTC 59.580 50.000 0.00 0.00 0.00 2.87
162 163 3.674997 CCCTCCTTCGTTTTCATTCTCA 58.325 45.455 0.00 0.00 0.00 3.27
163 164 4.072131 CCCTCCTTCGTTTTCATTCTCAA 58.928 43.478 0.00 0.00 0.00 3.02
164 165 4.083271 CCCTCCTTCGTTTTCATTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
165 166 4.515191 CCTCCTTCGTTTTCATTCTCAACA 59.485 41.667 0.00 0.00 0.00 3.33
166 167 5.008613 CCTCCTTCGTTTTCATTCTCAACAA 59.991 40.000 0.00 0.00 0.00 2.83
167 168 5.816919 TCCTTCGTTTTCATTCTCAACAAC 58.183 37.500 0.00 0.00 0.00 3.32
168 169 5.355630 TCCTTCGTTTTCATTCTCAACAACA 59.644 36.000 0.00 0.00 0.00 3.33
169 170 6.033341 CCTTCGTTTTCATTCTCAACAACAA 58.967 36.000 0.00 0.00 0.00 2.83
170 171 6.529829 CCTTCGTTTTCATTCTCAACAACAAA 59.470 34.615 0.00 0.00 0.00 2.83
171 172 7.062839 CCTTCGTTTTCATTCTCAACAACAAAA 59.937 33.333 0.00 0.00 0.00 2.44
172 173 7.875316 TCGTTTTCATTCTCAACAACAAAAA 57.125 28.000 0.00 0.00 0.00 1.94
214 215 9.113838 CCTTACGTACTATACTCCTGTAGAAAA 57.886 37.037 0.00 0.00 31.51 2.29
215 216 9.928236 CTTACGTACTATACTCCTGTAGAAAAC 57.072 37.037 0.00 0.00 31.51 2.43
216 217 7.928307 ACGTACTATACTCCTGTAGAAAACA 57.072 36.000 0.00 0.00 36.42 2.83
217 218 8.517062 ACGTACTATACTCCTGTAGAAAACAT 57.483 34.615 0.00 0.00 37.50 2.71
218 219 8.404000 ACGTACTATACTCCTGTAGAAAACATG 58.596 37.037 0.00 0.00 37.50 3.21
219 220 7.378995 CGTACTATACTCCTGTAGAAAACATGC 59.621 40.741 0.00 0.00 37.50 4.06
220 221 6.273825 ACTATACTCCTGTAGAAAACATGCG 58.726 40.000 0.00 0.00 37.50 4.73
259 263 0.388520 TCCACGCGACAACTCTGATG 60.389 55.000 15.93 0.00 0.00 3.07
260 264 1.417592 CACGCGACAACTCTGATGC 59.582 57.895 15.93 0.00 0.00 3.91
261 265 2.691522 CGCGACAACTCTGATGCG 59.308 61.111 0.00 0.00 40.93 4.73
262 266 2.397252 GCGACAACTCTGATGCGC 59.603 61.111 0.00 0.00 35.40 6.09
294 298 1.136305 TCCACGAAATCGGATCCAGAC 59.864 52.381 13.41 0.00 44.95 3.51
408 412 2.671177 CGCGCAACAGTCCAAGGAG 61.671 63.158 8.75 0.00 0.00 3.69
409 413 2.328099 GCGCAACAGTCCAAGGAGG 61.328 63.158 0.30 0.00 39.47 4.30
410 414 1.371183 CGCAACAGTCCAAGGAGGA 59.629 57.895 0.00 0.00 46.75 3.71
467 480 2.391389 GGACCGAAAAGGCGCAGAG 61.391 63.158 10.83 0.00 46.52 3.35
496 509 2.900337 GCCCAATTACTCCGCCCG 60.900 66.667 0.00 0.00 0.00 6.13
582 638 2.041405 CCCCCACTCTCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
589 645 3.036959 TCTCTCCCCTCCCTCCCC 61.037 72.222 0.00 0.00 0.00 4.81
591 647 2.543637 TCTCCCCTCCCTCCCCTT 60.544 66.667 0.00 0.00 0.00 3.95
595 651 4.845307 CCCTCCCTCCCCTTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
596 652 4.038804 CCTCCCTCCCCTTCCCCA 62.039 72.222 0.00 0.00 0.00 4.96
1309 1397 2.358737 CTCGTCCAGGCCAACCAC 60.359 66.667 5.01 0.00 39.06 4.16
1312 1400 2.597510 GTCCAGGCCAACCACACC 60.598 66.667 5.01 0.00 39.06 4.16
1489 1588 2.764572 CCCCCTTCTGTTACATACGAGT 59.235 50.000 0.00 0.00 0.00 4.18
1490 1589 3.956199 CCCCCTTCTGTTACATACGAGTA 59.044 47.826 0.00 0.00 0.00 2.59
1491 1590 4.037684 CCCCCTTCTGTTACATACGAGTAG 59.962 50.000 0.00 0.00 0.00 2.57
1515 1620 0.179056 ATATTCTTCCACCCGCACGG 60.179 55.000 1.02 1.02 37.81 4.94
1516 1625 2.862674 TATTCTTCCACCCGCACGGC 62.863 60.000 2.83 0.00 33.26 5.68
1540 1649 2.625906 CGCGCACGGATTGGTATG 59.374 61.111 8.75 0.00 34.97 2.39
1606 1716 6.811170 GCTAGCTAGCTAGGTTTGATCTAATG 59.189 42.308 39.60 19.46 45.62 1.90
1619 1729 2.293677 TCTAATGATCTGCGTGCGTT 57.706 45.000 0.00 0.00 0.00 4.84
1620 1730 2.193447 TCTAATGATCTGCGTGCGTTC 58.807 47.619 0.00 0.00 0.00 3.95
1621 1731 1.258982 CTAATGATCTGCGTGCGTTCC 59.741 52.381 0.00 0.00 0.00 3.62
1622 1732 1.369091 AATGATCTGCGTGCGTTCCC 61.369 55.000 0.00 0.00 0.00 3.97
1623 1733 3.554692 GATCTGCGTGCGTTCCCG 61.555 66.667 0.00 0.00 37.07 5.14
1624 1734 4.373116 ATCTGCGTGCGTTCCCGT 62.373 61.111 0.00 0.00 36.15 5.28
1898 2008 2.325082 ACCGAGCACAACGCCAATC 61.325 57.895 0.00 0.00 44.04 2.67
1981 2091 0.980231 AGCATGGGGTCTGGAGAGTC 60.980 60.000 0.00 0.00 0.00 3.36
2128 2243 2.261361 CGGTCACTCGGTGATGCA 59.739 61.111 9.47 0.00 44.63 3.96
2257 2372 0.312102 GCCTTGAACCAAGTGACTGC 59.688 55.000 6.04 0.00 39.58 4.40
2272 2387 3.372206 GTGACTGCTTCGTCATATTTGCT 59.628 43.478 7.20 0.00 44.84 3.91
2311 2426 2.551071 GCACTTGACTAACCAGGAAGCT 60.551 50.000 0.00 0.00 0.00 3.74
2314 2429 2.839486 TGACTAACCAGGAAGCTGTG 57.161 50.000 0.00 0.00 0.00 3.66
2354 2469 1.141881 CGCGCTGTAAGATCCCACT 59.858 57.895 5.56 0.00 34.07 4.00
2369 2485 2.026822 TCCCACTCAGCATTTTCCTCTC 60.027 50.000 0.00 0.00 0.00 3.20
2401 2517 8.268850 TCTTTTAGCTTTCTGTTATTGCCTAG 57.731 34.615 0.00 0.00 0.00 3.02
2422 2538 6.870965 CCTAGGATGATCTTAAATCGACCAAG 59.129 42.308 1.05 0.00 0.00 3.61
2539 2657 6.494059 ACTTCCATTTACCTAAGCAAAGGAT 58.506 36.000 11.07 0.00 39.15 3.24
2574 2692 8.251750 TCTGAATTTTGTGTACTAGAAATCCG 57.748 34.615 0.00 0.00 0.00 4.18
2703 2826 4.636206 GGATGTGGAGTATTTTCTGGTGTC 59.364 45.833 0.00 0.00 0.00 3.67
2734 2857 4.338118 GTCAGTGGTTTTGGATTCTCACAA 59.662 41.667 0.00 0.00 0.00 3.33
2751 2876 5.010922 TCTCACAATTACAAGCTGGCAAAAT 59.989 36.000 0.00 0.00 0.00 1.82
2798 2923 6.240894 TGAATGCTTTGAGTTAGAACCATCT 58.759 36.000 0.00 0.00 39.82 2.90
3069 3195 5.992217 GGGGATTCATAACTTGCTGTAGTAG 59.008 44.000 0.00 0.00 0.00 2.57
3130 3258 9.062524 GGCTGTATATATTTGTGTTTGATACCA 57.937 33.333 0.00 0.00 0.00 3.25
3193 3322 5.939447 TCCAGACATAATGTGGATGCATAA 58.061 37.500 0.00 0.00 45.75 1.90
3223 3353 6.463897 GCCATGGGTGAAGCTACTAAGTAATA 60.464 42.308 15.13 0.00 0.00 0.98
3224 3354 7.680730 CCATGGGTGAAGCTACTAAGTAATAT 58.319 38.462 2.85 0.00 0.00 1.28
3293 3423 3.563808 TGTTGACAGTTTGACATGGTAGC 59.436 43.478 0.00 0.00 0.00 3.58
3350 3481 2.232941 AGCTGCAAGGGTGATTTTGATG 59.767 45.455 1.02 0.00 0.00 3.07
3439 3571 1.172180 TTTGTTCAGGGGAGCGCAAG 61.172 55.000 11.47 0.00 43.44 4.01
3704 3836 4.047822 CAGAAATCGCCTGTGAGATAGAC 58.952 47.826 0.00 0.00 30.17 2.59
3723 3855 0.040067 CGGCTTCTTCAACAACCAGC 60.040 55.000 0.00 0.00 0.00 4.85
3725 3857 0.315251 GCTTCTTCAACAACCAGCCC 59.685 55.000 0.00 0.00 0.00 5.19
3775 3907 2.654987 CAGCAGTTTTCTTTTCCTCGC 58.345 47.619 0.00 0.00 0.00 5.03
3840 3973 2.101640 AGTTGCCAGTTTTCCCCAAT 57.898 45.000 0.00 0.00 0.00 3.16
3846 3979 0.388907 CAGTTTTCCCCAATGCTGCG 60.389 55.000 0.00 0.00 0.00 5.18
3930 4063 2.408565 TGCCTAGAGTTTATGGGGGAG 58.591 52.381 0.00 0.00 0.00 4.30
4002 4139 7.535139 AGGATGTTGTAACCGTAAATTGATTG 58.465 34.615 0.00 0.00 0.00 2.67
4051 4188 4.729918 CTCTGCCCACTGCCCCAC 62.730 72.222 0.00 0.00 40.16 4.61
4103 4240 2.929641 TGTCTCATCTGGTTGTTGCAA 58.070 42.857 0.00 0.00 0.00 4.08
4115 4252 4.037446 TGGTTGTTGCAATTAACTGGAGAC 59.963 41.667 21.34 10.00 0.00 3.36
4175 4313 5.982516 GTCTGTCACTGATATGTTCATCCTC 59.017 44.000 0.00 0.00 32.72 3.71
4180 4318 3.072184 ACTGATATGTTCATCCTCTGGGC 59.928 47.826 0.00 0.00 32.72 5.36
4216 4354 1.807142 GCTAGCCGCTTGAAAAAGAGT 59.193 47.619 2.29 0.00 35.14 3.24
4223 4361 3.004734 CCGCTTGAAAAAGAGTGGAACAT 59.995 43.478 0.00 0.00 44.45 2.71
4234 4372 1.134580 AGTGGAACATGATCAGCGGAG 60.135 52.381 0.00 0.00 44.52 4.63
4238 4376 2.350522 GAACATGATCAGCGGAGTTGT 58.649 47.619 0.00 0.00 40.49 3.32
4272 4410 0.250124 TGTACCTGCCGAACCAGTTG 60.250 55.000 0.00 0.00 0.00 3.16
4282 4420 3.638484 CCGAACCAGTTGGAATTTGAAC 58.362 45.455 4.92 0.00 38.94 3.18
4294 4432 7.775561 AGTTGGAATTTGAACTTCTGAACTACT 59.224 33.333 9.65 0.00 30.44 2.57
4295 4433 7.730364 TGGAATTTGAACTTCTGAACTACTC 57.270 36.000 0.00 0.00 0.00 2.59
4296 4434 6.710744 TGGAATTTGAACTTCTGAACTACTCC 59.289 38.462 0.00 0.00 0.00 3.85
4297 4435 6.149640 GGAATTTGAACTTCTGAACTACTCCC 59.850 42.308 0.00 0.00 0.00 4.30
4299 4437 5.470047 TTGAACTTCTGAACTACTCCCTC 57.530 43.478 0.00 0.00 0.00 4.30
4300 4438 4.742012 TGAACTTCTGAACTACTCCCTCT 58.258 43.478 0.00 0.00 0.00 3.69
4302 4440 4.120946 ACTTCTGAACTACTCCCTCTGT 57.879 45.455 0.00 0.00 0.00 3.41
4303 4441 4.484912 ACTTCTGAACTACTCCCTCTGTT 58.515 43.478 0.00 0.00 0.00 3.16
4304 4442 4.525100 ACTTCTGAACTACTCCCTCTGTTC 59.475 45.833 0.00 0.00 39.18 3.18
4305 4443 3.432378 TCTGAACTACTCCCTCTGTTCC 58.568 50.000 0.00 0.00 38.29 3.62
4306 4444 3.076182 TCTGAACTACTCCCTCTGTTCCT 59.924 47.826 0.00 0.00 38.29 3.36
4307 4445 4.291513 TCTGAACTACTCCCTCTGTTCCTA 59.708 45.833 0.00 0.00 38.29 2.94
4308 4446 5.006896 TGAACTACTCCCTCTGTTCCTAA 57.993 43.478 0.00 0.00 38.29 2.69
4309 4447 5.399991 TGAACTACTCCCTCTGTTCCTAAA 58.600 41.667 0.00 0.00 38.29 1.85
4310 4448 6.023603 TGAACTACTCCCTCTGTTCCTAAAT 58.976 40.000 0.00 0.00 38.29 1.40
4311 4449 7.186972 TGAACTACTCCCTCTGTTCCTAAATA 58.813 38.462 0.00 0.00 38.29 1.40
4312 4450 7.844779 TGAACTACTCCCTCTGTTCCTAAATAT 59.155 37.037 0.00 0.00 38.29 1.28
4313 4451 9.364653 GAACTACTCCCTCTGTTCCTAAATATA 57.635 37.037 0.00 0.00 34.47 0.86
4314 4452 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
4315 4453 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
4316 4454 7.068686 ACTCCCTCTGTTCCTAAATATAAGC 57.931 40.000 0.00 0.00 0.00 3.09
4317 4455 6.043358 ACTCCCTCTGTTCCTAAATATAAGCC 59.957 42.308 0.00 0.00 0.00 4.35
4318 4456 5.011738 TCCCTCTGTTCCTAAATATAAGCCG 59.988 44.000 0.00 0.00 0.00 5.52
4319 4457 5.238583 CCTCTGTTCCTAAATATAAGCCGG 58.761 45.833 0.00 0.00 0.00 6.13
4320 4458 5.221661 CCTCTGTTCCTAAATATAAGCCGGT 60.222 44.000 1.90 0.00 0.00 5.28
4321 4459 6.243216 TCTGTTCCTAAATATAAGCCGGTT 57.757 37.500 1.90 0.00 0.00 4.44
4322 4460 6.655930 TCTGTTCCTAAATATAAGCCGGTTT 58.344 36.000 9.08 9.08 0.00 3.27
4323 4461 6.764560 TCTGTTCCTAAATATAAGCCGGTTTC 59.235 38.462 6.88 0.00 0.00 2.78
4324 4462 5.524646 TGTTCCTAAATATAAGCCGGTTTCG 59.475 40.000 6.88 0.00 0.00 3.46
4325 4463 5.534207 TCCTAAATATAAGCCGGTTTCGA 57.466 39.130 6.88 0.00 39.00 3.71
4326 4464 5.291971 TCCTAAATATAAGCCGGTTTCGAC 58.708 41.667 6.88 0.00 39.00 4.20
4327 4465 5.051816 CCTAAATATAAGCCGGTTTCGACA 58.948 41.667 6.88 0.00 39.00 4.35
4328 4466 5.524646 CCTAAATATAAGCCGGTTTCGACAA 59.475 40.000 6.88 0.00 39.00 3.18
4329 4467 5.883503 AAATATAAGCCGGTTTCGACAAA 57.116 34.783 6.88 0.00 39.00 2.83
4330 4468 5.883503 AATATAAGCCGGTTTCGACAAAA 57.116 34.783 6.88 0.00 39.00 2.44
4331 4469 3.547649 ATAAGCCGGTTTCGACAAAAC 57.452 42.857 6.88 0.00 45.46 2.43
4344 4482 9.469239 GGTTTCGACAAAACGACTTATATTTAG 57.531 33.333 0.00 0.00 46.85 1.85
4345 4483 9.469239 GTTTCGACAAAACGACTTATATTTAGG 57.531 33.333 0.00 0.00 41.97 2.69
4346 4484 8.984891 TTCGACAAAACGACTTATATTTAGGA 57.015 30.769 0.00 0.00 41.97 2.94
4347 4485 8.984891 TCGACAAAACGACTTATATTTAGGAA 57.015 30.769 0.00 0.00 37.37 3.36
4348 4486 8.863049 TCGACAAAACGACTTATATTTAGGAAC 58.137 33.333 0.00 0.00 37.37 3.62
4349 4487 7.837923 CGACAAAACGACTTATATTTAGGAACG 59.162 37.037 0.00 0.00 35.09 3.95
4350 4488 7.967178 ACAAAACGACTTATATTTAGGAACGG 58.033 34.615 0.00 0.00 0.00 4.44
4351 4489 7.818930 ACAAAACGACTTATATTTAGGAACGGA 59.181 33.333 0.00 0.00 0.00 4.69
4352 4490 8.658609 CAAAACGACTTATATTTAGGAACGGAA 58.341 33.333 0.00 0.00 0.00 4.30
4353 4491 8.953368 AAACGACTTATATTTAGGAACGGAAT 57.047 30.769 0.00 0.00 0.00 3.01
4354 4492 7.941795 ACGACTTATATTTAGGAACGGAATG 57.058 36.000 0.00 0.00 0.00 2.67
4355 4493 7.719483 ACGACTTATATTTAGGAACGGAATGA 58.281 34.615 0.00 0.00 0.00 2.57
4356 4494 7.866393 ACGACTTATATTTAGGAACGGAATGAG 59.134 37.037 0.00 0.00 0.00 2.90
4357 4495 8.080417 CGACTTATATTTAGGAACGGAATGAGA 58.920 37.037 0.00 0.00 0.00 3.27
4358 4496 9.413048 GACTTATATTTAGGAACGGAATGAGAG 57.587 37.037 0.00 0.00 0.00 3.20
4367 4505 6.481643 AGGAACGGAATGAGAGGAAAATTTA 58.518 36.000 0.00 0.00 0.00 1.40
4408 4554 6.042638 TGGTGAAAACCAATTGAAAACTGA 57.957 33.333 7.12 0.00 36.74 3.41
4427 4580 6.210287 ACTGAAGTACTATGTTACTGCCTC 57.790 41.667 0.00 0.00 0.00 4.70
4429 4582 7.117397 ACTGAAGTACTATGTTACTGCCTCTA 58.883 38.462 0.00 0.00 0.00 2.43
4430 4583 7.283580 ACTGAAGTACTATGTTACTGCCTCTAG 59.716 40.741 0.00 0.00 0.00 2.43
4437 4773 7.291566 ACTATGTTACTGCCTCTAGTAGTGAT 58.708 38.462 0.69 0.00 42.03 3.06
4444 4780 7.906199 ACTGCCTCTAGTAGTGATCTAAAAT 57.094 36.000 0.69 0.00 40.31 1.82
4594 4935 7.554476 AGGAGAAGCTCTTAACAATTTATCACC 59.446 37.037 0.00 0.00 0.00 4.02
4761 5106 3.003763 GGAGTCTTCCCGCCCACT 61.004 66.667 0.00 0.00 37.53 4.00
4774 5119 2.692741 CCACTTCCCCTCCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
4777 5122 3.711782 CTTCCCCTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
4782 5127 3.711782 CCTCCCCTCCCCTCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
4783 5128 2.367512 CTCCCCTCCCCTCCCTTG 60.368 72.222 0.00 0.00 0.00 3.61
4784 5129 4.038804 TCCCCTCCCCTCCCTTGG 62.039 72.222 0.00 0.00 0.00 3.61
4785 5130 4.371231 CCCCTCCCCTCCCTTGGT 62.371 72.222 0.00 0.00 0.00 3.67
4891 5236 2.348888 GGTCATCACCTCGTCCGGT 61.349 63.158 0.00 0.00 40.00 5.28
5045 5390 3.262915 CCTCTTCCAGGTCTGTCTGATTT 59.737 47.826 0.00 0.00 37.53 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.797156 CAGCTGTCTACCATGTAATCGC 59.203 50.000 5.25 0.00 0.00 4.58
1 2 3.384668 CCAGCTGTCTACCATGTAATCG 58.615 50.000 13.81 0.00 0.00 3.34
2 3 3.495100 CCCCAGCTGTCTACCATGTAATC 60.495 52.174 13.81 0.00 0.00 1.75
4 5 1.837439 CCCCAGCTGTCTACCATGTAA 59.163 52.381 13.81 0.00 0.00 2.41
5 6 1.496060 CCCCAGCTGTCTACCATGTA 58.504 55.000 13.81 0.00 0.00 2.29
6 7 1.915078 GCCCCAGCTGTCTACCATGT 61.915 60.000 13.81 0.00 35.50 3.21
7 8 1.153086 GCCCCAGCTGTCTACCATG 60.153 63.158 13.81 0.00 35.50 3.66
8 9 2.735772 CGCCCCAGCTGTCTACCAT 61.736 63.158 13.81 0.00 36.60 3.55
9 10 3.390521 CGCCCCAGCTGTCTACCA 61.391 66.667 13.81 0.00 36.60 3.25
10 11 4.162690 CCGCCCCAGCTGTCTACC 62.163 72.222 13.81 0.00 36.60 3.18
11 12 4.162690 CCCGCCCCAGCTGTCTAC 62.163 72.222 13.81 0.00 36.60 2.59
40 41 4.266976 CACTGTAAAATCTAACGGCGTAGG 59.733 45.833 15.20 9.55 0.00 3.18
41 42 5.097529 TCACTGTAAAATCTAACGGCGTAG 58.902 41.667 15.20 11.43 0.00 3.51
42 43 5.058149 TCACTGTAAAATCTAACGGCGTA 57.942 39.130 15.20 0.00 0.00 4.42
43 44 3.916761 TCACTGTAAAATCTAACGGCGT 58.083 40.909 6.77 6.77 0.00 5.68
44 45 4.171005 TCTCACTGTAAAATCTAACGGCG 58.829 43.478 4.80 4.80 0.00 6.46
45 46 6.508088 CGAATCTCACTGTAAAATCTAACGGC 60.508 42.308 0.00 0.00 0.00 5.68
46 47 6.530534 ACGAATCTCACTGTAAAATCTAACGG 59.469 38.462 0.00 0.00 0.00 4.44
47 48 7.384124 CACGAATCTCACTGTAAAATCTAACG 58.616 38.462 0.00 0.00 0.00 3.18
48 49 7.544566 TCCACGAATCTCACTGTAAAATCTAAC 59.455 37.037 0.00 0.00 0.00 2.34
49 50 7.608153 TCCACGAATCTCACTGTAAAATCTAA 58.392 34.615 0.00 0.00 0.00 2.10
50 51 7.122204 TCTCCACGAATCTCACTGTAAAATCTA 59.878 37.037 0.00 0.00 0.00 1.98
51 52 6.037786 TCCACGAATCTCACTGTAAAATCT 57.962 37.500 0.00 0.00 0.00 2.40
52 53 6.100004 TCTCCACGAATCTCACTGTAAAATC 58.900 40.000 0.00 0.00 0.00 2.17
53 54 6.037786 TCTCCACGAATCTCACTGTAAAAT 57.962 37.500 0.00 0.00 0.00 1.82
54 55 5.462530 TCTCCACGAATCTCACTGTAAAA 57.537 39.130 0.00 0.00 0.00 1.52
55 56 5.661056 ATCTCCACGAATCTCACTGTAAA 57.339 39.130 0.00 0.00 0.00 2.01
56 57 5.661056 AATCTCCACGAATCTCACTGTAA 57.339 39.130 0.00 0.00 0.00 2.41
57 58 5.886474 ACTAATCTCCACGAATCTCACTGTA 59.114 40.000 0.00 0.00 0.00 2.74
58 59 4.707448 ACTAATCTCCACGAATCTCACTGT 59.293 41.667 0.00 0.00 0.00 3.55
59 60 5.255710 ACTAATCTCCACGAATCTCACTG 57.744 43.478 0.00 0.00 0.00 3.66
60 61 7.406031 TTTACTAATCTCCACGAATCTCACT 57.594 36.000 0.00 0.00 0.00 3.41
61 62 8.649973 ATTTTACTAATCTCCACGAATCTCAC 57.350 34.615 0.00 0.00 0.00 3.51
62 63 7.926555 GGATTTTACTAATCTCCACGAATCTCA 59.073 37.037 0.00 0.00 0.00 3.27
63 64 7.115095 CGGATTTTACTAATCTCCACGAATCTC 59.885 40.741 0.00 0.00 0.00 2.75
64 65 6.924060 CGGATTTTACTAATCTCCACGAATCT 59.076 38.462 0.00 0.00 0.00 2.40
65 66 6.145696 CCGGATTTTACTAATCTCCACGAATC 59.854 42.308 0.00 0.00 0.00 2.52
66 67 5.989777 CCGGATTTTACTAATCTCCACGAAT 59.010 40.000 0.00 0.00 0.00 3.34
67 68 5.127519 TCCGGATTTTACTAATCTCCACGAA 59.872 40.000 0.00 0.00 0.00 3.85
68 69 4.646040 TCCGGATTTTACTAATCTCCACGA 59.354 41.667 0.00 0.00 0.00 4.35
69 70 4.940463 TCCGGATTTTACTAATCTCCACG 58.060 43.478 0.00 0.00 0.00 4.94
70 71 7.201705 CCTTTTCCGGATTTTACTAATCTCCAC 60.202 40.741 4.15 0.00 0.00 4.02
71 72 6.826741 CCTTTTCCGGATTTTACTAATCTCCA 59.173 38.462 4.15 0.00 0.00 3.86
72 73 6.827251 ACCTTTTCCGGATTTTACTAATCTCC 59.173 38.462 4.15 0.00 0.00 3.71
73 74 7.860918 ACCTTTTCCGGATTTTACTAATCTC 57.139 36.000 4.15 0.00 0.00 2.75
74 75 8.645814 AAACCTTTTCCGGATTTTACTAATCT 57.354 30.769 4.15 0.00 0.00 2.40
77 78 8.795513 CCTAAAACCTTTTCCGGATTTTACTAA 58.204 33.333 4.15 0.00 32.26 2.24
78 79 8.162746 TCCTAAAACCTTTTCCGGATTTTACTA 58.837 33.333 4.15 0.00 32.26 1.82
79 80 7.005902 TCCTAAAACCTTTTCCGGATTTTACT 58.994 34.615 4.15 0.00 32.26 2.24
80 81 7.218228 TCCTAAAACCTTTTCCGGATTTTAC 57.782 36.000 4.15 0.00 32.26 2.01
81 82 7.836479 TTCCTAAAACCTTTTCCGGATTTTA 57.164 32.000 4.15 12.04 33.06 1.52
82 83 6.734502 TTCCTAAAACCTTTTCCGGATTTT 57.265 33.333 4.15 11.48 33.06 1.82
83 84 6.734502 TTTCCTAAAACCTTTTCCGGATTT 57.265 33.333 4.15 4.10 33.06 2.17
84 85 6.518493 GTTTTCCTAAAACCTTTTCCGGATT 58.482 36.000 4.15 0.00 43.78 3.01
85 86 5.278610 CGTTTTCCTAAAACCTTTTCCGGAT 60.279 40.000 4.15 0.00 46.12 4.18
86 87 4.036616 CGTTTTCCTAAAACCTTTTCCGGA 59.963 41.667 0.00 0.00 46.12 5.14
87 88 4.292599 CGTTTTCCTAAAACCTTTTCCGG 58.707 43.478 0.00 0.00 46.12 5.14
88 89 4.202040 ACCGTTTTCCTAAAACCTTTTCCG 60.202 41.667 9.10 0.00 46.12 4.30
89 90 5.045215 CACCGTTTTCCTAAAACCTTTTCC 58.955 41.667 9.10 0.00 46.12 3.13
90 91 4.505191 GCACCGTTTTCCTAAAACCTTTTC 59.495 41.667 9.10 0.00 46.12 2.29
91 92 4.160814 AGCACCGTTTTCCTAAAACCTTTT 59.839 37.500 9.10 0.00 46.12 2.27
92 93 3.702548 AGCACCGTTTTCCTAAAACCTTT 59.297 39.130 9.10 0.00 46.12 3.11
93 94 3.293337 AGCACCGTTTTCCTAAAACCTT 58.707 40.909 9.10 0.00 46.12 3.50
94 95 2.940158 AGCACCGTTTTCCTAAAACCT 58.060 42.857 9.10 0.00 46.12 3.50
95 96 3.635331 GAAGCACCGTTTTCCTAAAACC 58.365 45.455 9.10 0.00 46.12 3.27
96 97 3.294102 CGAAGCACCGTTTTCCTAAAAC 58.706 45.455 5.40 5.40 45.56 2.43
97 98 2.291190 CCGAAGCACCGTTTTCCTAAAA 59.709 45.455 0.00 0.00 0.00 1.52
98 99 1.874872 CCGAAGCACCGTTTTCCTAAA 59.125 47.619 0.00 0.00 0.00 1.85
99 100 1.515081 CCGAAGCACCGTTTTCCTAA 58.485 50.000 0.00 0.00 0.00 2.69
100 101 0.320946 CCCGAAGCACCGTTTTCCTA 60.321 55.000 0.00 0.00 0.00 2.94
101 102 1.599797 CCCGAAGCACCGTTTTCCT 60.600 57.895 0.00 0.00 0.00 3.36
102 103 1.895231 ACCCGAAGCACCGTTTTCC 60.895 57.895 0.00 0.00 0.00 3.13
103 104 1.161563 TCACCCGAAGCACCGTTTTC 61.162 55.000 0.00 0.00 0.00 2.29
104 105 1.153127 TCACCCGAAGCACCGTTTT 60.153 52.632 0.00 0.00 0.00 2.43
105 106 1.890510 GTCACCCGAAGCACCGTTT 60.891 57.895 0.00 0.00 0.00 3.60
106 107 2.280592 GTCACCCGAAGCACCGTT 60.281 61.111 0.00 0.00 0.00 4.44
107 108 4.309950 GGTCACCCGAAGCACCGT 62.310 66.667 0.00 0.00 0.00 4.83
117 118 2.847435 CTTTAGGCCGTCGGTCACCC 62.847 65.000 19.87 8.16 0.00 4.61
118 119 1.447314 CTTTAGGCCGTCGGTCACC 60.447 63.158 19.87 8.56 0.00 4.02
119 120 1.447314 CCTTTAGGCCGTCGGTCAC 60.447 63.158 19.87 6.65 0.00 3.67
120 121 2.975536 CCTTTAGGCCGTCGGTCA 59.024 61.111 19.87 0.82 0.00 4.02
130 131 2.610532 GAAGGAGGGCGGCCTTTAGG 62.611 65.000 33.28 0.00 45.43 2.69
131 132 1.153147 GAAGGAGGGCGGCCTTTAG 60.153 63.158 33.28 0.00 45.43 1.85
132 133 2.995547 GAAGGAGGGCGGCCTTTA 59.004 61.111 33.28 0.00 45.43 1.85
133 134 4.410400 CGAAGGAGGGCGGCCTTT 62.410 66.667 33.28 23.36 45.43 3.11
136 137 4.717313 AAACGAAGGAGGGCGGCC 62.717 66.667 22.67 22.67 0.00 6.13
137 138 2.671963 AAAACGAAGGAGGGCGGC 60.672 61.111 0.00 0.00 0.00 6.53
138 139 0.676782 ATGAAAACGAAGGAGGGCGG 60.677 55.000 0.00 0.00 0.00 6.13
139 140 1.130561 GAATGAAAACGAAGGAGGGCG 59.869 52.381 0.00 0.00 0.00 6.13
140 141 2.420372 GAGAATGAAAACGAAGGAGGGC 59.580 50.000 0.00 0.00 0.00 5.19
141 142 3.674997 TGAGAATGAAAACGAAGGAGGG 58.325 45.455 0.00 0.00 0.00 4.30
142 143 4.515191 TGTTGAGAATGAAAACGAAGGAGG 59.485 41.667 0.00 0.00 0.00 4.30
143 144 5.673337 TGTTGAGAATGAAAACGAAGGAG 57.327 39.130 0.00 0.00 0.00 3.69
144 145 5.355630 TGTTGTTGAGAATGAAAACGAAGGA 59.644 36.000 0.00 0.00 0.00 3.36
145 146 5.577835 TGTTGTTGAGAATGAAAACGAAGG 58.422 37.500 0.00 0.00 0.00 3.46
146 147 7.504922 TTTGTTGTTGAGAATGAAAACGAAG 57.495 32.000 0.00 0.00 0.00 3.79
147 148 7.875316 TTTTGTTGTTGAGAATGAAAACGAA 57.125 28.000 0.00 0.00 0.00 3.85
148 149 7.875316 TTTTTGTTGTTGAGAATGAAAACGA 57.125 28.000 0.00 0.00 0.00 3.85
185 186 9.094578 TCTACAGGAGTATAGTACGTAAGGTAT 57.905 37.037 0.00 0.00 46.39 2.73
186 187 8.478775 TCTACAGGAGTATAGTACGTAAGGTA 57.521 38.462 0.00 0.00 46.39 3.08
187 188 7.366847 TCTACAGGAGTATAGTACGTAAGGT 57.633 40.000 0.00 0.00 46.39 3.50
188 189 8.668510 TTTCTACAGGAGTATAGTACGTAAGG 57.331 38.462 0.00 0.00 46.39 2.69
190 191 9.448438 TGTTTTCTACAGGAGTATAGTACGTAA 57.552 33.333 0.00 0.00 31.68 3.18
191 192 9.618890 ATGTTTTCTACAGGAGTATAGTACGTA 57.381 33.333 0.00 0.00 40.83 3.57
192 193 7.928307 TGTTTTCTACAGGAGTATAGTACGT 57.072 36.000 0.00 0.00 31.68 3.57
193 194 7.378995 GCATGTTTTCTACAGGAGTATAGTACG 59.621 40.741 0.00 0.00 40.94 3.67
204 205 2.333926 TCGTCGCATGTTTTCTACAGG 58.666 47.619 0.00 0.00 40.83 4.00
208 209 4.142988 GGTTTCATCGTCGCATGTTTTCTA 60.143 41.667 0.00 0.00 0.00 2.10
209 210 3.364964 GGTTTCATCGTCGCATGTTTTCT 60.365 43.478 0.00 0.00 0.00 2.52
214 215 1.518325 TTGGTTTCATCGTCGCATGT 58.482 45.000 0.00 0.00 0.00 3.21
215 216 2.508867 CTTTGGTTTCATCGTCGCATG 58.491 47.619 0.00 0.00 0.00 4.06
216 217 1.135689 GCTTTGGTTTCATCGTCGCAT 60.136 47.619 0.00 0.00 0.00 4.73
217 218 0.237235 GCTTTGGTTTCATCGTCGCA 59.763 50.000 0.00 0.00 0.00 5.10
218 219 0.789383 CGCTTTGGTTTCATCGTCGC 60.789 55.000 0.00 0.00 0.00 5.19
219 220 0.179225 CCGCTTTGGTTTCATCGTCG 60.179 55.000 0.00 0.00 0.00 5.12
220 221 3.676091 CCGCTTTGGTTTCATCGTC 57.324 52.632 0.00 0.00 0.00 4.20
239 243 0.317160 ATCAGAGTTGTCGCGTGGAA 59.683 50.000 5.77 0.00 0.00 3.53
261 265 4.090057 GTGGAGCTTTCACCGCGC 62.090 66.667 0.00 0.00 0.00 6.86
464 477 4.736896 GGCGGCCGTCGTTTCTCT 62.737 66.667 28.70 0.00 41.72 3.10
532 581 2.613506 CGTCGGGCTGGTTTGGTTC 61.614 63.158 0.00 0.00 0.00 3.62
581 637 4.364686 GGTGGGGAAGGGGAGGGA 62.365 72.222 0.00 0.00 0.00 4.20
1207 1289 2.043852 TCAGAGGCGGAGGAGTCC 60.044 66.667 0.00 0.00 39.88 3.85
1309 1397 2.973899 CACTGGTCCTCGAGGGTG 59.026 66.667 30.80 24.60 36.25 4.61
1312 1400 4.135153 CGGCACTGGTCCTCGAGG 62.135 72.222 26.32 26.32 0.00 4.63
1489 1588 5.242393 GTGCGGGTGGAAGAATATACTACTA 59.758 44.000 0.00 0.00 0.00 1.82
1490 1589 4.038883 GTGCGGGTGGAAGAATATACTACT 59.961 45.833 0.00 0.00 0.00 2.57
1491 1590 4.304939 GTGCGGGTGGAAGAATATACTAC 58.695 47.826 0.00 0.00 0.00 2.73
1538 1647 1.150560 CATCCCATCCATTTCCCCCAT 59.849 52.381 0.00 0.00 0.00 4.00
1540 1649 0.178924 CCATCCCATCCATTTCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
1582 1692 8.116651 TCATTAGATCAAACCTAGCTAGCTAG 57.883 38.462 35.39 35.39 44.07 3.42
1786 1896 2.182030 GCGACGAAGAGGGTCTGG 59.818 66.667 0.00 0.00 32.24 3.86
1906 2016 2.685017 ATGAGCTCCTGCCGGACA 60.685 61.111 12.15 1.09 40.80 4.02
1981 2091 1.586422 CGACCTGTATGATGCCCTTG 58.414 55.000 0.00 0.00 0.00 3.61
2128 2243 7.064253 GTGTTATACTTTGCGTCTTTCAGGTAT 59.936 37.037 0.00 0.00 0.00 2.73
2257 2372 5.745514 CCATCTGAAGCAAATATGACGAAG 58.254 41.667 0.00 0.00 0.00 3.79
2272 2387 0.322816 GCTCCCACAAGCCATCTGAA 60.323 55.000 0.00 0.00 36.22 3.02
2354 2469 9.911788 AAAGAAATATAGAGAGGAAAATGCTGA 57.088 29.630 0.00 0.00 0.00 4.26
2393 2509 6.876257 GTCGATTTAAGATCATCCTAGGCAAT 59.124 38.462 2.96 0.00 0.00 3.56
2401 2517 5.817816 ACACTTGGTCGATTTAAGATCATCC 59.182 40.000 11.60 0.00 0.00 3.51
2422 2538 5.886960 AGGAAACTCATAGCATTTCACAC 57.113 39.130 0.00 0.00 32.90 3.82
2471 2587 8.942338 TGATACACATTTAGTCTGGTGAATAC 57.058 34.615 0.00 0.00 35.33 1.89
2574 2692 6.521133 GTCGACAAAACATGAGAACATCATTC 59.479 38.462 11.55 0.00 46.97 2.67
2675 2798 4.885907 CAGAAAATACTCCACATCCAGCAT 59.114 41.667 0.00 0.00 0.00 3.79
2734 2857 5.226194 TGGAAATTTTGCCAGCTTGTAAT 57.774 34.783 0.00 0.00 0.00 1.89
2798 2923 6.964464 TGCCTCAAACTTCCTATGGTAATAA 58.036 36.000 0.00 0.00 0.00 1.40
2882 3007 2.486548 GCCGGCAATACAGAAGGGAATA 60.487 50.000 24.80 0.00 0.00 1.75
3069 3195 3.258228 GCTAAAGAGACCTCAGTCAAGC 58.742 50.000 0.00 0.00 46.15 4.01
3130 3258 4.586001 GCTTGTGGGACATTCAATATCCAT 59.414 41.667 0.00 0.00 44.52 3.41
3253 3383 7.903145 TGTCAACAGTATCCAACAAGTACTAT 58.097 34.615 0.00 0.00 0.00 2.12
3293 3423 6.039382 AGCCAACTTCAACTAGTTTGGTAAAG 59.961 38.462 19.62 13.84 36.24 1.85
3308 3438 3.312404 GCTGAGTGAGCCAACTTCA 57.688 52.632 0.00 0.00 42.54 3.02
3350 3481 4.473477 ACCATTTACCTACAGCTGAGAC 57.527 45.455 23.35 0.00 0.00 3.36
3439 3571 2.751806 AGTGCTGCTTTTATGAGCCTTC 59.248 45.455 0.00 0.00 42.01 3.46
3704 3836 0.040067 GCTGGTTGTTGAAGAAGCCG 60.040 55.000 1.77 0.00 0.00 5.52
3775 3907 5.748630 GTGCAAAACCAAGAGAAAAGTAAGG 59.251 40.000 0.00 0.00 0.00 2.69
3930 4063 4.828072 TTTCTAGGAAGGAAGAAGAGGC 57.172 45.455 0.00 0.00 33.49 4.70
4002 4139 4.811557 AGATTATTGTAAGCTGCGAGAACC 59.188 41.667 0.00 0.00 0.00 3.62
4084 4221 4.510038 AATTGCAACAACCAGATGAGAC 57.490 40.909 0.00 0.00 0.00 3.36
4103 4240 1.840635 GCTCCCCAGTCTCCAGTTAAT 59.159 52.381 0.00 0.00 0.00 1.40
4137 4275 5.065218 CAGTGACAGACATAATTTAGGGCAC 59.935 44.000 0.00 0.00 0.00 5.01
4144 4282 9.671279 TGAACATATCAGTGACAGACATAATTT 57.329 29.630 0.00 0.00 33.04 1.82
4175 4313 1.736645 CGTTACCTGACACGCCCAG 60.737 63.158 0.00 0.00 0.00 4.45
4180 4318 2.531927 TAGCGGCGTTACCTGACACG 62.532 60.000 9.37 0.00 39.49 4.49
4216 4354 0.904649 ACTCCGCTGATCATGTTCCA 59.095 50.000 0.00 0.00 0.00 3.53
4223 4361 2.289631 ACATCAACAACTCCGCTGATCA 60.290 45.455 0.00 0.00 0.00 2.92
4234 4372 6.017109 AGGTACATCTCAAACACATCAACAAC 60.017 38.462 0.00 0.00 0.00 3.32
4238 4376 4.455533 GCAGGTACATCTCAAACACATCAA 59.544 41.667 0.00 0.00 0.00 2.57
4272 4410 6.149640 GGGAGTAGTTCAGAAGTTCAAATTCC 59.850 42.308 5.50 5.76 0.00 3.01
4282 4420 4.081917 GGAACAGAGGGAGTAGTTCAGAAG 60.082 50.000 0.00 0.00 41.49 2.85
4294 4432 5.011738 CGGCTTATATTTAGGAACAGAGGGA 59.988 44.000 0.00 0.00 0.00 4.20
4295 4433 5.238583 CGGCTTATATTTAGGAACAGAGGG 58.761 45.833 0.00 0.00 0.00 4.30
4296 4434 5.221661 ACCGGCTTATATTTAGGAACAGAGG 60.222 44.000 0.00 0.00 0.00 3.69
4297 4435 5.855045 ACCGGCTTATATTTAGGAACAGAG 58.145 41.667 0.00 0.00 0.00 3.35
4299 4437 6.292703 CGAAACCGGCTTATATTTAGGAACAG 60.293 42.308 0.00 0.00 0.00 3.16
4300 4438 5.524646 CGAAACCGGCTTATATTTAGGAACA 59.475 40.000 0.00 0.00 0.00 3.18
4302 4440 5.754890 GTCGAAACCGGCTTATATTTAGGAA 59.245 40.000 0.00 0.00 0.00 3.36
4303 4441 5.163426 TGTCGAAACCGGCTTATATTTAGGA 60.163 40.000 0.00 0.00 32.05 2.94
4304 4442 5.051816 TGTCGAAACCGGCTTATATTTAGG 58.948 41.667 0.00 0.00 32.05 2.69
4305 4443 6.592798 TTGTCGAAACCGGCTTATATTTAG 57.407 37.500 0.00 0.00 32.05 1.85
4306 4444 6.981762 TTTGTCGAAACCGGCTTATATTTA 57.018 33.333 0.00 0.00 32.05 1.40
4307 4445 5.883503 TTTGTCGAAACCGGCTTATATTT 57.116 34.783 0.00 0.00 32.05 1.40
4308 4446 5.633927 GTTTTGTCGAAACCGGCTTATATT 58.366 37.500 0.00 0.00 41.43 1.28
4309 4447 4.201744 CGTTTTGTCGAAACCGGCTTATAT 60.202 41.667 0.00 0.00 43.80 0.86
4310 4448 3.123284 CGTTTTGTCGAAACCGGCTTATA 59.877 43.478 0.00 0.00 43.80 0.98
4311 4449 2.096119 CGTTTTGTCGAAACCGGCTTAT 60.096 45.455 0.00 0.00 43.80 1.73
4312 4450 1.261089 CGTTTTGTCGAAACCGGCTTA 59.739 47.619 0.00 0.00 43.80 3.09
4313 4451 0.028374 CGTTTTGTCGAAACCGGCTT 59.972 50.000 0.00 0.00 43.80 4.35
4314 4452 0.810823 TCGTTTTGTCGAAACCGGCT 60.811 50.000 0.00 0.00 43.80 5.52
4315 4453 0.655337 GTCGTTTTGTCGAAACCGGC 60.655 55.000 0.00 3.92 43.80 6.13
4316 4454 0.932399 AGTCGTTTTGTCGAAACCGG 59.068 50.000 0.00 0.00 43.80 5.28
4317 4455 2.724744 AAGTCGTTTTGTCGAAACCG 57.275 45.000 9.66 5.87 43.80 4.44
4318 4456 9.469239 CTAAATATAAGTCGTTTTGTCGAAACC 57.531 33.333 9.66 0.00 43.80 3.27
4319 4457 9.469239 CCTAAATATAAGTCGTTTTGTCGAAAC 57.531 33.333 5.70 5.70 43.36 2.78
4320 4458 9.421806 TCCTAAATATAAGTCGTTTTGTCGAAA 57.578 29.630 0.00 0.00 41.47 3.46
4321 4459 8.984891 TCCTAAATATAAGTCGTTTTGTCGAA 57.015 30.769 0.00 0.00 41.47 3.71
4322 4460 8.863049 GTTCCTAAATATAAGTCGTTTTGTCGA 58.137 33.333 0.00 0.00 37.51 4.20
4323 4461 7.837923 CGTTCCTAAATATAAGTCGTTTTGTCG 59.162 37.037 0.00 0.00 0.00 4.35
4324 4462 8.112449 CCGTTCCTAAATATAAGTCGTTTTGTC 58.888 37.037 0.00 0.00 0.00 3.18
4325 4463 7.818930 TCCGTTCCTAAATATAAGTCGTTTTGT 59.181 33.333 0.00 0.00 0.00 2.83
4326 4464 8.188531 TCCGTTCCTAAATATAAGTCGTTTTG 57.811 34.615 0.00 0.00 0.00 2.44
4327 4465 8.776376 TTCCGTTCCTAAATATAAGTCGTTTT 57.224 30.769 0.00 0.00 0.00 2.43
4328 4466 8.823818 CATTCCGTTCCTAAATATAAGTCGTTT 58.176 33.333 0.00 0.00 0.00 3.60
4329 4467 8.199449 TCATTCCGTTCCTAAATATAAGTCGTT 58.801 33.333 0.00 0.00 0.00 3.85
4330 4468 7.719483 TCATTCCGTTCCTAAATATAAGTCGT 58.281 34.615 0.00 0.00 0.00 4.34
4331 4469 8.080417 TCTCATTCCGTTCCTAAATATAAGTCG 58.920 37.037 0.00 0.00 0.00 4.18
4332 4470 9.413048 CTCTCATTCCGTTCCTAAATATAAGTC 57.587 37.037 0.00 0.00 0.00 3.01
4333 4471 8.368668 CCTCTCATTCCGTTCCTAAATATAAGT 58.631 37.037 0.00 0.00 0.00 2.24
4334 4472 8.585881 TCCTCTCATTCCGTTCCTAAATATAAG 58.414 37.037 0.00 0.00 0.00 1.73
4335 4473 8.486942 TCCTCTCATTCCGTTCCTAAATATAA 57.513 34.615 0.00 0.00 0.00 0.98
4336 4474 8.486942 TTCCTCTCATTCCGTTCCTAAATATA 57.513 34.615 0.00 0.00 0.00 0.86
4337 4475 6.996180 TCCTCTCATTCCGTTCCTAAATAT 57.004 37.500 0.00 0.00 0.00 1.28
4338 4476 6.801718 TTCCTCTCATTCCGTTCCTAAATA 57.198 37.500 0.00 0.00 0.00 1.40
4339 4477 5.693769 TTCCTCTCATTCCGTTCCTAAAT 57.306 39.130 0.00 0.00 0.00 1.40
4340 4478 5.492855 TTTCCTCTCATTCCGTTCCTAAA 57.507 39.130 0.00 0.00 0.00 1.85
4341 4479 5.492855 TTTTCCTCTCATTCCGTTCCTAA 57.507 39.130 0.00 0.00 0.00 2.69
4342 4480 5.693769 ATTTTCCTCTCATTCCGTTCCTA 57.306 39.130 0.00 0.00 0.00 2.94
4343 4481 4.576330 ATTTTCCTCTCATTCCGTTCCT 57.424 40.909 0.00 0.00 0.00 3.36
4344 4482 5.644977 AAATTTTCCTCTCATTCCGTTCC 57.355 39.130 0.00 0.00 0.00 3.62
4345 4483 6.248631 CGTAAATTTTCCTCTCATTCCGTTC 58.751 40.000 0.00 0.00 0.00 3.95
4346 4484 5.123344 CCGTAAATTTTCCTCTCATTCCGTT 59.877 40.000 0.00 0.00 0.00 4.44
4347 4485 4.634443 CCGTAAATTTTCCTCTCATTCCGT 59.366 41.667 0.00 0.00 0.00 4.69
4348 4486 4.495844 GCCGTAAATTTTCCTCTCATTCCG 60.496 45.833 0.00 0.00 0.00 4.30
4349 4487 4.398044 TGCCGTAAATTTTCCTCTCATTCC 59.602 41.667 0.00 0.00 0.00 3.01
4350 4488 5.354234 TCTGCCGTAAATTTTCCTCTCATTC 59.646 40.000 0.00 0.00 0.00 2.67
4351 4489 5.253330 TCTGCCGTAAATTTTCCTCTCATT 58.747 37.500 0.00 0.00 0.00 2.57
4352 4490 4.843728 TCTGCCGTAAATTTTCCTCTCAT 58.156 39.130 0.00 0.00 0.00 2.90
4353 4491 4.280436 TCTGCCGTAAATTTTCCTCTCA 57.720 40.909 0.00 0.00 0.00 3.27
4354 4492 4.142665 GGTTCTGCCGTAAATTTTCCTCTC 60.143 45.833 0.00 0.00 0.00 3.20
4355 4493 3.756963 GGTTCTGCCGTAAATTTTCCTCT 59.243 43.478 0.00 0.00 0.00 3.69
4356 4494 3.119602 GGGTTCTGCCGTAAATTTTCCTC 60.120 47.826 0.00 0.00 38.44 3.71
4357 4495 2.823747 GGGTTCTGCCGTAAATTTTCCT 59.176 45.455 0.00 0.00 38.44 3.36
4358 4496 2.559231 TGGGTTCTGCCGTAAATTTTCC 59.441 45.455 0.00 0.00 38.44 3.13
4367 4505 0.392998 CATAGCTTGGGTTCTGCCGT 60.393 55.000 0.00 0.00 38.44 5.68
4408 4554 8.273605 ACTACTAGAGGCAGTAACATAGTACTT 58.726 37.037 0.00 0.00 31.78 2.24
4423 4576 7.493367 ACACATTTTAGATCACTACTAGAGGC 58.507 38.462 0.00 0.00 0.00 4.70
4482 4818 9.995003 ATGCTCCATGTTTTCATAAACTTTTTA 57.005 25.926 0.00 0.00 43.25 1.52
4499 4839 0.533491 CCAACCCAACATGCTCCATG 59.467 55.000 3.80 3.80 46.18 3.66
4501 4841 0.827089 CACCAACCCAACATGCTCCA 60.827 55.000 0.00 0.00 0.00 3.86
4506 4846 1.068434 GGACAACACCAACCCAACATG 59.932 52.381 0.00 0.00 0.00 3.21
4617 4958 9.020731 ACTTTTTCAGTAAGAACCTCTCAAAAA 57.979 29.630 0.00 0.00 35.56 1.94
4619 4960 8.458843 CAACTTTTTCAGTAAGAACCTCTCAAA 58.541 33.333 0.00 0.00 35.56 2.69
4620 4961 7.610305 ACAACTTTTTCAGTAAGAACCTCTCAA 59.390 33.333 0.00 0.00 35.56 3.02
4621 4962 7.065803 CACAACTTTTTCAGTAAGAACCTCTCA 59.934 37.037 0.00 0.00 35.56 3.27
4623 4964 6.318900 CCACAACTTTTTCAGTAAGAACCTCT 59.681 38.462 0.00 0.00 35.56 3.69
4624 4965 6.317893 TCCACAACTTTTTCAGTAAGAACCTC 59.682 38.462 0.00 0.00 35.56 3.85
4626 4967 6.445357 TCCACAACTTTTTCAGTAAGAACC 57.555 37.500 0.00 0.00 35.56 3.62
4627 4968 8.807581 CATTTCCACAACTTTTTCAGTAAGAAC 58.192 33.333 0.00 0.00 35.56 3.01
4660 5004 1.265236 CCAGCACCATTTTGGGCTAA 58.735 50.000 8.55 0.00 43.37 3.09
4761 5106 3.707189 GAGGGGAGGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
4779 5124 1.212935 CCATGGAACCCTAGACCAAGG 59.787 57.143 5.56 0.00 36.47 3.61
4780 5125 2.171448 CTCCATGGAACCCTAGACCAAG 59.829 54.545 17.00 0.00 37.24 3.61
4781 5126 2.196595 CTCCATGGAACCCTAGACCAA 58.803 52.381 17.00 0.00 37.24 3.67
4782 5127 1.879575 CTCCATGGAACCCTAGACCA 58.120 55.000 17.00 0.00 38.09 4.02
4783 5128 0.470341 GCTCCATGGAACCCTAGACC 59.530 60.000 17.00 0.00 0.00 3.85
4784 5129 0.470341 GGCTCCATGGAACCCTAGAC 59.530 60.000 21.87 4.65 0.00 2.59
4785 5130 0.044092 TGGCTCCATGGAACCCTAGA 59.956 55.000 27.80 9.54 29.74 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.