Multiple sequence alignment - TraesCS5B01G509500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G509500 chr5B 100.000 7321 0 0 1 7321 674888789 674896109 0.000000e+00 13520.0
1 TraesCS5B01G509500 chr5B 93.916 3057 126 22 3433 6443 675080189 675083231 0.000000e+00 4560.0
2 TraesCS5B01G509500 chr5B 95.048 2484 120 3 3430 5910 675423371 675425854 0.000000e+00 3903.0
3 TraesCS5B01G509500 chr5B 83.094 278 32 10 2522 2797 675079085 675079349 9.490000e-59 239.0
4 TraesCS5B01G509500 chr5B 79.643 280 51 5 6797 7074 566962289 566962014 5.790000e-46 196.0
5 TraesCS5B01G509500 chr5D 95.736 5769 168 32 948 6691 534634545 534640260 0.000000e+00 9219.0
6 TraesCS5B01G509500 chr5D 96.662 2636 60 9 3451 6065 534856915 534859543 0.000000e+00 4355.0
7 TraesCS5B01G509500 chr5D 94.688 2485 129 3 3430 5912 534865016 534867499 0.000000e+00 3855.0
8 TraesCS5B01G509500 chr5D 86.895 496 40 4 6827 7321 534640339 534640810 3.890000e-147 532.0
9 TraesCS5B01G509500 chr5D 82.734 278 33 10 2522 2797 534856097 534856361 4.420000e-57 233.0
10 TraesCS5B01G509500 chr5D 87.417 151 16 2 1641 1789 25522466 25522615 3.510000e-38 171.0
11 TraesCS5B01G509500 chr4A 95.664 2629 93 9 3451 6065 636687176 636684555 0.000000e+00 4204.0
12 TraesCS5B01G509500 chr4A 85.190 2154 210 63 807 2923 636967659 636965578 0.000000e+00 2109.0
13 TraesCS5B01G509500 chr4A 91.593 452 27 4 372 821 636968153 636967711 1.350000e-171 614.0
14 TraesCS5B01G509500 chr4A 82.796 279 39 8 2522 2797 636687967 636687695 2.640000e-59 241.0
15 TraesCS5B01G509500 chr4A 84.507 213 29 4 6793 7002 705244788 705244577 2.680000e-49 207.0
16 TraesCS5B01G509500 chr4A 83.654 208 34 0 6795 7002 705435751 705435958 5.790000e-46 196.0
17 TraesCS5B01G509500 chr4A 86.395 147 17 2 1648 1792 519261031 519260886 2.730000e-34 158.0
18 TraesCS5B01G509500 chr4A 92.683 41 2 1 3020 3059 577983085 577983125 2.850000e-04 58.4
19 TraesCS5B01G509500 chr7A 94.947 2474 125 0 3451 5924 657353214 657355687 0.000000e+00 3877.0
20 TraesCS5B01G509500 chr7A 85.470 117 9 3 6530 6638 255344458 255344574 1.670000e-21 115.0
21 TraesCS5B01G509500 chr7A 94.444 36 1 1 3027 3061 261705556 261705521 4.000000e-03 54.7
22 TraesCS5B01G509500 chr7D 94.584 2474 134 0 3451 5924 568598492 568600965 0.000000e+00 3827.0
23 TraesCS5B01G509500 chr7B 94.543 2474 135 0 3451 5924 624351116 624353589 0.000000e+00 3821.0
24 TraesCS5B01G509500 chr7B 87.292 480 53 2 6780 7259 601266379 601265908 6.460000e-150 542.0
25 TraesCS5B01G509500 chr7B 87.069 116 7 3 6531 6638 396779822 396779707 2.770000e-24 124.0
26 TraesCS5B01G509500 chr7B 86.325 117 8 3 6530 6638 175497126 175497010 3.590000e-23 121.0
27 TraesCS5B01G509500 chr7B 97.222 36 0 1 3027 3061 626062100 626062065 7.930000e-05 60.2
28 TraesCS5B01G509500 chr7B 100.000 30 0 0 6751 6780 601266436 601266407 1.000000e-03 56.5
29 TraesCS5B01G509500 chr1B 87.242 533 59 3 6781 7312 561547004 561546480 3.780000e-167 599.0
30 TraesCS5B01G509500 chr1B 88.155 439 44 2 6781 7219 561548078 561547648 3.920000e-142 516.0
31 TraesCS5B01G509500 chr1B 81.102 508 62 15 370 852 24489280 24489778 6.930000e-100 375.0
32 TraesCS5B01G509500 chr1B 77.007 274 41 15 2527 2797 197788455 197788709 3.560000e-28 137.0
33 TraesCS5B01G509500 chr3A 84.881 377 36 8 542 900 631339539 631339912 1.940000e-95 361.0
34 TraesCS5B01G509500 chr3A 86.932 176 22 1 372 546 631308540 631308715 5.790000e-46 196.0
35 TraesCS5B01G509500 chr3A 86.325 117 8 3 6530 6638 457173298 457173414 3.590000e-23 121.0
36 TraesCS5B01G509500 chr3A 85.841 113 16 0 6890 7002 726519884 726519772 3.590000e-23 121.0
37 TraesCS5B01G509500 chr3A 85.470 117 9 4 6530 6638 97752435 97752319 1.670000e-21 115.0
38 TraesCS5B01G509500 chr6B 84.043 376 46 5 1416 1789 272620975 272620612 4.200000e-92 350.0
39 TraesCS5B01G509500 chr6B 85.714 119 8 4 6528 6638 398083533 398083650 4.640000e-22 117.0
40 TraesCS5B01G509500 chr2A 89.453 256 18 8 653 901 47900167 47899914 1.530000e-81 315.0
41 TraesCS5B01G509500 chr2A 88.800 250 27 1 373 621 744064768 744065017 9.230000e-79 305.0
42 TraesCS5B01G509500 chr2A 88.446 251 28 1 372 621 47900411 47900161 1.190000e-77 302.0
43 TraesCS5B01G509500 chr2A 86.800 250 21 9 653 892 744065011 744065258 1.210000e-67 268.0
44 TraesCS5B01G509500 chr2A 81.356 177 28 4 727 899 47901119 47901294 9.900000e-29 139.0
45 TraesCS5B01G509500 chr2A 87.850 107 13 0 6530 6636 435271539 435271645 7.710000e-25 126.0
46 TraesCS5B01G509500 chr2A 86.325 117 8 3 6530 6638 230221785 230221901 3.590000e-23 121.0
47 TraesCS5B01G509500 chr2A 97.297 37 0 1 3025 3060 507692103 507692139 2.210000e-05 62.1
48 TraesCS5B01G509500 chr2B 84.861 251 33 4 6779 7028 732640591 732640345 1.580000e-61 248.0
49 TraesCS5B01G509500 chr2B 100.000 33 0 0 6748 6780 27942446 27942478 2.210000e-05 62.1
50 TraesCS5B01G509500 chr2B 100.000 32 0 0 6748 6779 732640649 732640618 7.930000e-05 60.2
51 TraesCS5B01G509500 chr4D 83.889 180 22 4 1619 1792 295252026 295251848 1.630000e-36 165.0
52 TraesCS5B01G509500 chr4B 85.430 151 19 2 1641 1789 144286637 144286786 3.540000e-33 154.0
53 TraesCS5B01G509500 chr4B 83.041 171 21 5 1619 1788 88707407 88707244 1.650000e-31 148.0
54 TraesCS5B01G509500 chr4B 90.164 61 6 0 6627 6687 95267363 95267303 6.090000e-11 80.5
55 TraesCS5B01G509500 chr4B 100.000 34 0 0 6645 6678 5242850 5242817 6.130000e-06 63.9
56 TraesCS5B01G509500 chr3B 83.735 166 19 5 1629 1793 442044806 442044964 4.580000e-32 150.0
57 TraesCS5B01G509500 chr3B 78.829 222 35 7 2577 2797 631814028 631813818 9.900000e-29 139.0
58 TraesCS5B01G509500 chr3B 76.838 272 46 12 2527 2797 631921178 631920923 3.560000e-28 137.0
59 TraesCS5B01G509500 chr6D 77.206 272 45 11 2527 2797 248585096 248585351 7.660000e-30 143.0
60 TraesCS5B01G509500 chr6D 96.875 32 1 0 3030 3061 464987724 464987755 4.000000e-03 54.7
61 TraesCS5B01G509500 chr2D 85.470 117 9 3 6530 6638 61400233 61400349 1.670000e-21 115.0
62 TraesCS5B01G509500 chr2D 89.130 46 4 1 6627 6672 152997950 152997906 1.000000e-03 56.5
63 TraesCS5B01G509500 chr1A 95.000 40 1 1 3023 3061 259202267 259202228 2.210000e-05 62.1
64 TraesCS5B01G509500 chr3D 97.222 36 0 1 3027 3061 604262605 604262570 7.930000e-05 60.2
65 TraesCS5B01G509500 chr3D 97.143 35 0 1 3028 3061 465762251 465762285 2.850000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G509500 chr5B 674888789 674896109 7320 False 13520.00 13520 100.0000 1 7321 1 chr5B.!!$F1 7320
1 TraesCS5B01G509500 chr5B 675423371 675425854 2483 False 3903.00 3903 95.0480 3430 5910 1 chr5B.!!$F2 2480
2 TraesCS5B01G509500 chr5B 675079085 675083231 4146 False 2399.50 4560 88.5050 2522 6443 2 chr5B.!!$F3 3921
3 TraesCS5B01G509500 chr5D 534634545 534640810 6265 False 4875.50 9219 91.3155 948 7321 2 chr5D.!!$F3 6373
4 TraesCS5B01G509500 chr5D 534865016 534867499 2483 False 3855.00 3855 94.6880 3430 5912 1 chr5D.!!$F2 2482
5 TraesCS5B01G509500 chr5D 534856097 534859543 3446 False 2294.00 4355 89.6980 2522 6065 2 chr5D.!!$F4 3543
6 TraesCS5B01G509500 chr4A 636684555 636687967 3412 True 2222.50 4204 89.2300 2522 6065 2 chr4A.!!$R3 3543
7 TraesCS5B01G509500 chr4A 636965578 636968153 2575 True 1361.50 2109 88.3915 372 2923 2 chr4A.!!$R4 2551
8 TraesCS5B01G509500 chr7A 657353214 657355687 2473 False 3877.00 3877 94.9470 3451 5924 1 chr7A.!!$F2 2473
9 TraesCS5B01G509500 chr7D 568598492 568600965 2473 False 3827.00 3827 94.5840 3451 5924 1 chr7D.!!$F1 2473
10 TraesCS5B01G509500 chr7B 624351116 624353589 2473 False 3821.00 3821 94.5430 3451 5924 1 chr7B.!!$F1 2473
11 TraesCS5B01G509500 chr7B 601265908 601266436 528 True 299.25 542 93.6460 6751 7259 2 chr7B.!!$R4 508
12 TraesCS5B01G509500 chr1B 561546480 561548078 1598 True 557.50 599 87.6985 6781 7312 2 chr1B.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 756 0.030101 GAGAAGGACGCCTCATCTCG 59.970 60.000 10.06 0.00 30.89 4.04 F
1447 1520 0.035439 ATGGATGCCCGTCGTTTCTT 60.035 50.000 0.00 0.00 34.29 2.52 F
1540 1621 0.307760 CCGACCTGTGTTTCTTGTGC 59.692 55.000 0.00 0.00 0.00 4.57 F
2035 2124 0.542467 ATGCATTGGTTGGCCACTCA 60.542 50.000 3.88 3.49 46.01 3.41 F
2037 2126 0.609662 GCATTGGTTGGCCACTCAAT 59.390 50.000 20.90 20.90 46.01 2.57 F
2391 2481 1.089920 CCATGCCTGTTTCTTCCTCG 58.910 55.000 0.00 0.00 0.00 4.63 F
2467 2557 2.229792 TGGTCGATTGCTTTTCTTGCT 58.770 42.857 0.00 0.00 0.00 3.91 F
5302 5723 1.185618 TTGGACCTGAGACGACTGGG 61.186 60.000 0.00 0.00 34.01 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1798 0.107643 TTGTCCCACGCTGAACATGA 59.892 50.000 0.00 0.00 0.00 3.07 R
2403 2493 1.075536 GGTCCTCCACAATTGAAGGGT 59.924 52.381 13.59 0.00 0.00 4.34 R
2467 2557 4.319405 CGTAATGCAGAAACACACATCACA 60.319 41.667 0.00 0.00 0.00 3.58 R
3135 3253 6.757947 TGCCAATTTCTGAGCTTATAAATTGC 59.242 34.615 24.76 21.18 43.24 3.56 R
4714 5135 3.119316 CCAAAGCAACAGTGTTACCACAA 60.119 43.478 8.49 0.00 44.39 3.33 R
5302 5723 1.169661 TGTCGACAACCATGTTGGGC 61.170 55.000 17.62 2.78 43.37 5.36 R
5504 5925 3.134458 GAGAAGCATAAATGACCCTCCG 58.866 50.000 0.00 0.00 0.00 4.63 R
6776 7256 0.032678 CAGGCATACAGTAGCTCGGG 59.967 60.000 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.993424 ACATATTAACTCTATCCAAGTCCAAGT 58.007 33.333 0.00 0.00 0.00 3.16
28 29 9.838339 CATATTAACTCTATCCAAGTCCAAGTT 57.162 33.333 0.00 0.00 0.00 2.66
29 30 9.838339 ATATTAACTCTATCCAAGTCCAAGTTG 57.162 33.333 0.00 0.00 0.00 3.16
31 32 3.264450 ACTCTATCCAAGTCCAAGTTGGG 59.736 47.826 21.85 5.43 46.31 4.12
32 33 3.519510 CTCTATCCAAGTCCAAGTTGGGA 59.480 47.826 21.85 10.87 46.31 4.37
33 34 2.887151 ATCCAAGTCCAAGTTGGGAG 57.113 50.000 21.85 9.06 46.31 4.30
34 35 0.110486 TCCAAGTCCAAGTTGGGAGC 59.890 55.000 21.85 12.12 46.31 4.70
35 36 0.895559 CCAAGTCCAAGTTGGGAGCC 60.896 60.000 21.85 7.72 43.38 4.70
36 37 0.178992 CAAGTCCAAGTTGGGAGCCA 60.179 55.000 21.85 0.00 38.32 4.75
37 38 0.555769 AAGTCCAAGTTGGGAGCCAA 59.444 50.000 21.85 0.00 41.69 4.52
48 49 3.435186 GAGCCAACTCCAAGCGCC 61.435 66.667 2.29 0.00 36.90 6.53
49 50 4.269523 AGCCAACTCCAAGCGCCA 62.270 61.111 2.29 0.00 0.00 5.69
50 51 3.294493 GCCAACTCCAAGCGCCAA 61.294 61.111 2.29 0.00 0.00 4.52
51 52 2.956987 CCAACTCCAAGCGCCAAG 59.043 61.111 2.29 0.00 0.00 3.61
52 53 1.600636 CCAACTCCAAGCGCCAAGA 60.601 57.895 2.29 0.00 0.00 3.02
53 54 0.962356 CCAACTCCAAGCGCCAAGAT 60.962 55.000 2.29 0.00 0.00 2.40
54 55 0.169672 CAACTCCAAGCGCCAAGATG 59.830 55.000 2.29 0.00 0.00 2.90
55 56 0.036732 AACTCCAAGCGCCAAGATGA 59.963 50.000 2.29 0.00 0.00 2.92
56 57 0.674895 ACTCCAAGCGCCAAGATGAC 60.675 55.000 2.29 0.00 0.00 3.06
57 58 0.674581 CTCCAAGCGCCAAGATGACA 60.675 55.000 2.29 0.00 0.00 3.58
58 59 0.674581 TCCAAGCGCCAAGATGACAG 60.675 55.000 2.29 0.00 0.00 3.51
59 60 0.957395 CCAAGCGCCAAGATGACAGT 60.957 55.000 2.29 0.00 0.00 3.55
60 61 0.877071 CAAGCGCCAAGATGACAGTT 59.123 50.000 2.29 0.00 0.00 3.16
61 62 0.877071 AAGCGCCAAGATGACAGTTG 59.123 50.000 2.29 0.00 0.00 3.16
62 63 0.957395 AGCGCCAAGATGACAGTTGG 60.957 55.000 2.29 12.99 45.30 3.77
63 64 0.955428 GCGCCAAGATGACAGTTGGA 60.955 55.000 19.18 0.00 45.35 3.53
64 65 1.081892 CGCCAAGATGACAGTTGGAG 58.918 55.000 19.18 13.74 45.35 3.86
65 66 1.457346 GCCAAGATGACAGTTGGAGG 58.543 55.000 19.18 1.36 45.35 4.30
66 67 1.457346 CCAAGATGACAGTTGGAGGC 58.543 55.000 12.23 0.00 45.35 4.70
67 68 1.081892 CAAGATGACAGTTGGAGGCG 58.918 55.000 0.00 0.00 0.00 5.52
68 69 0.976641 AAGATGACAGTTGGAGGCGA 59.023 50.000 0.00 0.00 0.00 5.54
69 70 0.534412 AGATGACAGTTGGAGGCGAG 59.466 55.000 0.00 0.00 0.00 5.03
70 71 0.532573 GATGACAGTTGGAGGCGAGA 59.467 55.000 0.00 0.00 0.00 4.04
71 72 0.534412 ATGACAGTTGGAGGCGAGAG 59.466 55.000 0.00 0.00 0.00 3.20
72 73 1.216710 GACAGTTGGAGGCGAGAGG 59.783 63.158 0.00 0.00 0.00 3.69
73 74 2.232298 GACAGTTGGAGGCGAGAGGG 62.232 65.000 0.00 0.00 0.00 4.30
74 75 3.394836 AGTTGGAGGCGAGAGGGC 61.395 66.667 0.00 0.00 42.69 5.19
83 84 3.721625 GCGAGAGGGCCAAAAATTC 57.278 52.632 6.18 0.00 0.00 2.17
84 85 1.177401 GCGAGAGGGCCAAAAATTCT 58.823 50.000 6.18 0.00 0.00 2.40
85 86 1.133216 GCGAGAGGGCCAAAAATTCTC 59.867 52.381 6.18 7.25 0.00 2.87
86 87 2.716217 CGAGAGGGCCAAAAATTCTCT 58.284 47.619 6.18 4.92 37.50 3.10
87 88 2.421424 CGAGAGGGCCAAAAATTCTCTG 59.579 50.000 6.18 1.41 35.25 3.35
88 89 2.757314 GAGAGGGCCAAAAATTCTCTGG 59.243 50.000 6.18 0.00 35.25 3.86
91 92 3.423848 GCCAAAAATTCTCTGGCGG 57.576 52.632 9.01 0.00 45.72 6.13
92 93 0.737367 GCCAAAAATTCTCTGGCGGC 60.737 55.000 0.00 0.00 45.72 6.53
93 94 0.456653 CCAAAAATTCTCTGGCGGCG 60.457 55.000 0.51 0.51 0.00 6.46
94 95 0.456653 CAAAAATTCTCTGGCGGCGG 60.457 55.000 12.43 12.43 0.00 6.13
95 96 2.212900 AAAAATTCTCTGGCGGCGGC 62.213 55.000 27.76 27.76 38.90 6.53
96 97 3.918253 AAATTCTCTGGCGGCGGCA 62.918 57.895 33.97 33.97 42.47 5.69
106 107 4.760047 CGGCGGCAGTAGCACCTT 62.760 66.667 10.53 0.00 44.61 3.50
107 108 2.582436 GGCGGCAGTAGCACCTTA 59.418 61.111 3.07 0.00 44.61 2.69
108 109 1.078708 GGCGGCAGTAGCACCTTAA 60.079 57.895 3.07 0.00 44.61 1.85
109 110 1.366854 GGCGGCAGTAGCACCTTAAC 61.367 60.000 3.07 0.00 44.61 2.01
110 111 1.693083 GCGGCAGTAGCACCTTAACG 61.693 60.000 0.00 0.00 44.61 3.18
111 112 0.108992 CGGCAGTAGCACCTTAACGA 60.109 55.000 0.00 0.00 44.61 3.85
112 113 1.670674 CGGCAGTAGCACCTTAACGAA 60.671 52.381 0.00 0.00 44.61 3.85
113 114 2.419667 GGCAGTAGCACCTTAACGAAA 58.580 47.619 0.00 0.00 44.61 3.46
114 115 2.159037 GGCAGTAGCACCTTAACGAAAC 59.841 50.000 0.00 0.00 44.61 2.78
115 116 2.159037 GCAGTAGCACCTTAACGAAACC 59.841 50.000 0.00 0.00 41.58 3.27
116 117 2.740447 CAGTAGCACCTTAACGAAACCC 59.260 50.000 0.00 0.00 0.00 4.11
117 118 2.079158 GTAGCACCTTAACGAAACCCC 58.921 52.381 0.00 0.00 0.00 4.95
118 119 0.251033 AGCACCTTAACGAAACCCCC 60.251 55.000 0.00 0.00 0.00 5.40
119 120 1.579964 GCACCTTAACGAAACCCCCG 61.580 60.000 0.00 0.00 0.00 5.73
120 121 1.302752 ACCTTAACGAAACCCCCGC 60.303 57.895 0.00 0.00 0.00 6.13
121 122 1.002990 CCTTAACGAAACCCCCGCT 60.003 57.895 0.00 0.00 0.00 5.52
122 123 1.022982 CCTTAACGAAACCCCCGCTC 61.023 60.000 0.00 0.00 0.00 5.03
123 124 0.036671 CTTAACGAAACCCCCGCTCT 60.037 55.000 0.00 0.00 0.00 4.09
124 125 1.205417 CTTAACGAAACCCCCGCTCTA 59.795 52.381 0.00 0.00 0.00 2.43
125 126 1.265236 TAACGAAACCCCCGCTCTAA 58.735 50.000 0.00 0.00 0.00 2.10
126 127 0.321034 AACGAAACCCCCGCTCTAAC 60.321 55.000 0.00 0.00 0.00 2.34
127 128 1.294138 CGAAACCCCCGCTCTAACA 59.706 57.895 0.00 0.00 0.00 2.41
128 129 0.320946 CGAAACCCCCGCTCTAACAA 60.321 55.000 0.00 0.00 0.00 2.83
129 130 1.677820 CGAAACCCCCGCTCTAACAAT 60.678 52.381 0.00 0.00 0.00 2.71
130 131 1.743394 GAAACCCCCGCTCTAACAATG 59.257 52.381 0.00 0.00 0.00 2.82
131 132 0.696501 AACCCCCGCTCTAACAATGT 59.303 50.000 0.00 0.00 0.00 2.71
132 133 0.035439 ACCCCCGCTCTAACAATGTG 60.035 55.000 0.00 0.00 0.00 3.21
133 134 1.376609 CCCCCGCTCTAACAATGTGC 61.377 60.000 0.00 0.00 0.00 4.57
134 135 0.676466 CCCCGCTCTAACAATGTGCA 60.676 55.000 0.00 0.00 0.00 4.57
135 136 1.164411 CCCGCTCTAACAATGTGCAA 58.836 50.000 0.00 0.00 0.00 4.08
136 137 1.135689 CCCGCTCTAACAATGTGCAAC 60.136 52.381 0.00 0.00 37.35 4.17
212 213 6.358974 TCTTGAGACACACCAAGAATATCA 57.641 37.500 0.00 0.00 43.84 2.15
213 214 6.950842 TCTTGAGACACACCAAGAATATCAT 58.049 36.000 0.00 0.00 43.84 2.45
214 215 8.078060 TCTTGAGACACACCAAGAATATCATA 57.922 34.615 0.00 0.00 43.84 2.15
215 216 8.708378 TCTTGAGACACACCAAGAATATCATAT 58.292 33.333 0.00 0.00 43.84 1.78
216 217 8.667076 TTGAGACACACCAAGAATATCATATG 57.333 34.615 0.00 0.00 0.00 1.78
217 218 6.707608 TGAGACACACCAAGAATATCATATGC 59.292 38.462 0.00 0.00 0.00 3.14
218 219 6.594744 AGACACACCAAGAATATCATATGCA 58.405 36.000 0.00 0.00 0.00 3.96
219 220 7.056006 AGACACACCAAGAATATCATATGCAA 58.944 34.615 0.00 0.00 0.00 4.08
220 221 7.228108 AGACACACCAAGAATATCATATGCAAG 59.772 37.037 0.00 0.00 0.00 4.01
221 222 6.263842 ACACACCAAGAATATCATATGCAAGG 59.736 38.462 0.00 0.00 0.00 3.61
222 223 5.771666 ACACCAAGAATATCATATGCAAGGG 59.228 40.000 0.00 0.00 0.00 3.95
223 224 4.768968 ACCAAGAATATCATATGCAAGGGC 59.231 41.667 0.00 0.00 41.68 5.19
224 225 4.159135 CCAAGAATATCATATGCAAGGGCC 59.841 45.833 0.00 0.00 40.13 5.80
225 226 4.662966 AGAATATCATATGCAAGGGCCA 57.337 40.909 6.18 0.00 40.13 5.36
226 227 5.001833 AGAATATCATATGCAAGGGCCAA 57.998 39.130 6.18 0.00 40.13 4.52
227 228 4.768968 AGAATATCATATGCAAGGGCCAAC 59.231 41.667 6.18 0.00 40.13 3.77
228 229 1.321474 ATCATATGCAAGGGCCAACG 58.679 50.000 6.18 0.00 40.13 4.10
229 230 1.066257 CATATGCAAGGGCCAACGC 59.934 57.895 6.18 5.48 40.13 4.84
230 231 1.076777 ATATGCAAGGGCCAACGCT 60.077 52.632 6.18 0.00 41.64 5.07
232 233 1.312371 TATGCAAGGGCCAACGCTTC 61.312 55.000 6.18 0.00 46.46 3.86
233 234 3.294493 GCAAGGGCCAACGCTTCA 61.294 61.111 6.18 0.00 46.46 3.02
234 235 2.639327 GCAAGGGCCAACGCTTCAT 61.639 57.895 6.18 0.00 46.46 2.57
235 236 1.508088 CAAGGGCCAACGCTTCATC 59.492 57.895 6.18 0.00 46.46 2.92
236 237 1.074775 AAGGGCCAACGCTTCATCA 59.925 52.632 6.18 0.00 45.19 3.07
237 238 1.244019 AAGGGCCAACGCTTCATCAC 61.244 55.000 6.18 0.00 45.19 3.06
238 239 1.675641 GGGCCAACGCTTCATCACT 60.676 57.895 4.39 0.00 34.44 3.41
239 240 1.503542 GGCCAACGCTTCATCACTG 59.496 57.895 0.00 0.00 34.44 3.66
240 241 1.503542 GCCAACGCTTCATCACTGG 59.496 57.895 0.00 0.00 0.00 4.00
241 242 1.926511 GCCAACGCTTCATCACTGGG 61.927 60.000 0.00 0.00 0.00 4.45
242 243 1.503542 CAACGCTTCATCACTGGGC 59.496 57.895 0.00 0.00 0.00 5.36
243 244 1.675641 AACGCTTCATCACTGGGCC 60.676 57.895 0.00 0.00 0.00 5.80
244 245 2.825836 CGCTTCATCACTGGGCCC 60.826 66.667 17.59 17.59 0.00 5.80
245 246 2.825836 GCTTCATCACTGGGCCCG 60.826 66.667 19.37 14.85 0.00 6.13
246 247 2.124570 CTTCATCACTGGGCCCGG 60.125 66.667 30.26 30.26 0.00 5.73
247 248 3.704231 CTTCATCACTGGGCCCGGG 62.704 68.421 34.33 23.00 0.00 5.73
257 258 2.847715 GGCCCGGGCAGTAGGTAT 60.848 66.667 44.46 0.00 44.11 2.73
258 259 2.449450 GGCCCGGGCAGTAGGTATT 61.449 63.158 44.46 0.00 44.11 1.89
259 260 1.530283 GCCCGGGCAGTAGGTATTT 59.470 57.895 40.73 0.00 41.49 1.40
260 261 0.106868 GCCCGGGCAGTAGGTATTTT 60.107 55.000 40.73 0.00 41.49 1.82
261 262 1.683938 GCCCGGGCAGTAGGTATTTTT 60.684 52.381 40.73 0.00 41.49 1.94
276 277 2.843669 TTTTTAGCCGTGCGTAGGG 58.156 52.632 7.97 7.97 34.94 3.53
286 287 4.217159 GCGTAGGGCGGTAGGTGG 62.217 72.222 0.00 0.00 41.69 4.61
287 288 3.534056 CGTAGGGCGGTAGGTGGG 61.534 72.222 0.00 0.00 36.85 4.61
288 289 2.364710 GTAGGGCGGTAGGTGGGT 60.365 66.667 0.00 0.00 0.00 4.51
289 290 2.364579 TAGGGCGGTAGGTGGGTG 60.365 66.667 0.00 0.00 0.00 4.61
290 291 3.988050 TAGGGCGGTAGGTGGGTGG 62.988 68.421 0.00 0.00 0.00 4.61
292 293 2.684655 GGCGGTAGGTGGGTGGTA 60.685 66.667 0.00 0.00 0.00 3.25
293 294 2.292559 GGCGGTAGGTGGGTGGTAA 61.293 63.158 0.00 0.00 0.00 2.85
294 295 1.629181 GGCGGTAGGTGGGTGGTAAT 61.629 60.000 0.00 0.00 0.00 1.89
295 296 1.122227 GCGGTAGGTGGGTGGTAATA 58.878 55.000 0.00 0.00 0.00 0.98
296 297 1.485895 GCGGTAGGTGGGTGGTAATAA 59.514 52.381 0.00 0.00 0.00 1.40
297 298 2.105306 GCGGTAGGTGGGTGGTAATAAT 59.895 50.000 0.00 0.00 0.00 1.28
298 299 3.434024 GCGGTAGGTGGGTGGTAATAATT 60.434 47.826 0.00 0.00 0.00 1.40
299 300 4.784177 CGGTAGGTGGGTGGTAATAATTT 58.216 43.478 0.00 0.00 0.00 1.82
300 301 5.195185 CGGTAGGTGGGTGGTAATAATTTT 58.805 41.667 0.00 0.00 0.00 1.82
301 302 5.653330 CGGTAGGTGGGTGGTAATAATTTTT 59.347 40.000 0.00 0.00 0.00 1.94
321 322 3.515071 TTTCTTAGAAGAACAACGCGC 57.485 42.857 5.73 0.00 44.18 6.86
322 323 2.433868 TCTTAGAAGAACAACGCGCT 57.566 45.000 5.73 0.00 30.73 5.92
323 324 2.750948 TCTTAGAAGAACAACGCGCTT 58.249 42.857 5.73 0.00 30.73 4.68
324 325 3.128349 TCTTAGAAGAACAACGCGCTTT 58.872 40.909 5.73 0.00 30.73 3.51
325 326 4.300803 TCTTAGAAGAACAACGCGCTTTA 58.699 39.130 5.73 0.00 30.73 1.85
326 327 4.927425 TCTTAGAAGAACAACGCGCTTTAT 59.073 37.500 5.73 0.00 30.73 1.40
327 328 5.407387 TCTTAGAAGAACAACGCGCTTTATT 59.593 36.000 5.73 0.00 30.73 1.40
328 329 4.483476 AGAAGAACAACGCGCTTTATTT 57.517 36.364 5.73 0.00 0.00 1.40
329 330 4.464112 AGAAGAACAACGCGCTTTATTTC 58.536 39.130 5.73 8.80 0.00 2.17
330 331 3.889196 AGAACAACGCGCTTTATTTCA 57.111 38.095 5.73 0.00 0.00 2.69
331 332 4.419522 AGAACAACGCGCTTTATTTCAT 57.580 36.364 5.73 5.31 0.00 2.57
332 333 4.794169 AGAACAACGCGCTTTATTTCATT 58.206 34.783 5.73 0.00 0.00 2.57
333 334 5.219633 AGAACAACGCGCTTTATTTCATTT 58.780 33.333 5.73 0.00 0.00 2.32
334 335 6.375377 AGAACAACGCGCTTTATTTCATTTA 58.625 32.000 5.73 0.00 0.00 1.40
335 336 5.985526 ACAACGCGCTTTATTTCATTTAC 57.014 34.783 5.73 0.00 0.00 2.01
336 337 5.695818 ACAACGCGCTTTATTTCATTTACT 58.304 33.333 5.73 0.00 0.00 2.24
337 338 5.793457 ACAACGCGCTTTATTTCATTTACTC 59.207 36.000 5.73 0.00 0.00 2.59
338 339 5.539582 ACGCGCTTTATTTCATTTACTCA 57.460 34.783 5.73 0.00 0.00 3.41
339 340 5.933790 ACGCGCTTTATTTCATTTACTCAA 58.066 33.333 5.73 0.00 0.00 3.02
340 341 6.021596 ACGCGCTTTATTTCATTTACTCAAG 58.978 36.000 5.73 0.00 0.00 3.02
341 342 6.021596 CGCGCTTTATTTCATTTACTCAAGT 58.978 36.000 5.56 0.00 0.00 3.16
342 343 6.523201 CGCGCTTTATTTCATTTACTCAAGTT 59.477 34.615 5.56 0.00 0.00 2.66
343 344 7.060633 CGCGCTTTATTTCATTTACTCAAGTTT 59.939 33.333 5.56 0.00 0.00 2.66
344 345 9.337091 GCGCTTTATTTCATTTACTCAAGTTTA 57.663 29.630 0.00 0.00 0.00 2.01
349 350 7.718334 ATTTCATTTACTCAAGTTTAGGGGG 57.282 36.000 0.00 0.00 0.00 5.40
350 351 6.457159 TTCATTTACTCAAGTTTAGGGGGA 57.543 37.500 0.00 0.00 0.00 4.81
351 352 6.652205 TCATTTACTCAAGTTTAGGGGGAT 57.348 37.500 0.00 0.00 0.00 3.85
352 353 7.758820 TCATTTACTCAAGTTTAGGGGGATA 57.241 36.000 0.00 0.00 0.00 2.59
353 354 7.571025 TCATTTACTCAAGTTTAGGGGGATAC 58.429 38.462 0.00 0.00 0.00 2.24
354 355 6.956102 TTTACTCAAGTTTAGGGGGATACA 57.044 37.500 0.00 0.00 39.74 2.29
355 356 6.956102 TTACTCAAGTTTAGGGGGATACAA 57.044 37.500 0.00 0.00 39.74 2.41
356 357 5.853572 ACTCAAGTTTAGGGGGATACAAA 57.146 39.130 0.00 0.00 39.74 2.83
357 358 5.816682 ACTCAAGTTTAGGGGGATACAAAG 58.183 41.667 0.00 0.00 39.74 2.77
358 359 5.550403 ACTCAAGTTTAGGGGGATACAAAGA 59.450 40.000 0.00 0.00 39.74 2.52
359 360 6.217693 ACTCAAGTTTAGGGGGATACAAAGAT 59.782 38.462 0.00 0.00 39.74 2.40
360 361 7.404980 ACTCAAGTTTAGGGGGATACAAAGATA 59.595 37.037 0.00 0.00 39.74 1.98
361 362 8.165267 TCAAGTTTAGGGGGATACAAAGATAA 57.835 34.615 0.00 0.00 39.74 1.75
362 363 8.787818 TCAAGTTTAGGGGGATACAAAGATAAT 58.212 33.333 0.00 0.00 39.74 1.28
363 364 9.067986 CAAGTTTAGGGGGATACAAAGATAATC 57.932 37.037 0.00 0.00 39.74 1.75
364 365 7.756614 AGTTTAGGGGGATACAAAGATAATCC 58.243 38.462 0.00 0.00 38.79 3.01
365 366 4.910458 AGGGGGATACAAAGATAATCCG 57.090 45.455 0.00 0.00 40.15 4.18
366 367 3.587506 AGGGGGATACAAAGATAATCCGG 59.412 47.826 0.00 0.00 40.15 5.14
367 368 3.585732 GGGGGATACAAAGATAATCCGGA 59.414 47.826 6.61 6.61 40.15 5.14
368 369 4.323562 GGGGGATACAAAGATAATCCGGAG 60.324 50.000 11.34 0.00 40.15 4.63
403 404 1.068753 CCGCCTCTCGCTGATGAAT 59.931 57.895 0.00 0.00 36.73 2.57
444 445 1.065410 TGGCCACCCAAGAGGAAGAA 61.065 55.000 0.00 0.00 38.46 2.52
454 455 2.235898 CAAGAGGAAGAAGGGTCAGAGG 59.764 54.545 0.00 0.00 0.00 3.69
462 463 3.083997 GGGTCAGAGGGGATGCGT 61.084 66.667 0.00 0.00 0.00 5.24
490 491 2.738521 CGTCGGGTTGGCACTCAG 60.739 66.667 0.00 0.00 0.00 3.35
505 506 2.597217 CAGCCGCTCCAAACCCAA 60.597 61.111 0.00 0.00 0.00 4.12
507 508 4.038080 GCCGCTCCAAACCCAACG 62.038 66.667 0.00 0.00 0.00 4.10
548 549 3.374058 CGTTCACCAATTTCGCTAAGGAT 59.626 43.478 0.00 0.00 0.00 3.24
551 552 2.024414 ACCAATTTCGCTAAGGATGCC 58.976 47.619 0.00 0.00 0.00 4.40
557 558 1.324383 TCGCTAAGGATGCCGACATA 58.676 50.000 0.00 0.00 36.35 2.29
563 564 3.036084 GATGCCGACATACCCGCG 61.036 66.667 0.00 0.00 36.35 6.46
579 580 2.815647 CGACTCCCGCCTTCAAGC 60.816 66.667 0.00 0.00 0.00 4.01
597 598 1.213926 AGCTCATCCATTTCCTCACCC 59.786 52.381 0.00 0.00 0.00 4.61
598 599 1.752084 GCTCATCCATTTCCTCACCCC 60.752 57.143 0.00 0.00 0.00 4.95
599 600 0.546122 TCATCCATTTCCTCACCCCG 59.454 55.000 0.00 0.00 0.00 5.73
600 601 0.466189 CATCCATTTCCTCACCCCGG 60.466 60.000 0.00 0.00 0.00 5.73
601 602 0.919289 ATCCATTTCCTCACCCCGGT 60.919 55.000 0.00 0.00 0.00 5.28
602 603 1.077716 CCATTTCCTCACCCCGGTC 60.078 63.158 0.00 0.00 0.00 4.79
687 688 2.224161 GCTTTCGGGAGATGCTCACTAT 60.224 50.000 0.00 0.00 39.57 2.12
689 690 2.073252 TCGGGAGATGCTCACTATGT 57.927 50.000 0.00 0.00 30.58 2.29
723 725 0.740149 TTATGCATGGCTTGGCTTCG 59.260 50.000 10.16 0.00 0.00 3.79
730 732 2.347490 GCTTGGCTTCGGTGGAGA 59.653 61.111 0.00 0.00 0.00 3.71
737 739 0.681564 GCTTCGGTGGAGAGAGGAGA 60.682 60.000 0.00 0.00 0.00 3.71
739 741 1.748493 CTTCGGTGGAGAGAGGAGAAG 59.252 57.143 0.00 0.00 0.00 2.85
753 756 0.030101 GAGAAGGACGCCTCATCTCG 59.970 60.000 10.06 0.00 30.89 4.04
769 772 4.764823 TCATCTCGCAAAACCACCTAAATT 59.235 37.500 0.00 0.00 0.00 1.82
770 773 5.941058 TCATCTCGCAAAACCACCTAAATTA 59.059 36.000 0.00 0.00 0.00 1.40
771 774 6.431543 TCATCTCGCAAAACCACCTAAATTAA 59.568 34.615 0.00 0.00 0.00 1.40
839 908 6.588373 CAGGGTTAAAATTGTACCAAAATCGG 59.412 38.462 6.31 0.00 33.51 4.18
848 917 0.112412 ACCAAAATCGGCTTCAGGGT 59.888 50.000 0.00 0.00 0.00 4.34
862 931 4.860022 CTTCAGGGTGGGATTTGTCTATT 58.140 43.478 0.00 0.00 0.00 1.73
867 936 2.243736 GGTGGGATTTGTCTATTGGGGA 59.756 50.000 0.00 0.00 0.00 4.81
874 943 6.070251 GGGATTTGTCTATTGGGGAACATTTT 60.070 38.462 0.00 0.00 0.00 1.82
878 947 5.640147 TGTCTATTGGGGAACATTTTGAGT 58.360 37.500 0.00 0.00 0.00 3.41
892 961 6.638610 ACATTTTGAGTGTGAAAAATGGACA 58.361 32.000 19.38 0.00 31.20 4.02
897 966 7.769272 TTGAGTGTGAAAAATGGACATTTTC 57.231 32.000 19.74 14.40 46.76 2.29
901 970 8.791327 AGTGTGAAAAATGGACATTTTCTTTT 57.209 26.923 19.74 7.57 46.76 2.27
902 971 8.667463 AGTGTGAAAAATGGACATTTTCTTTTG 58.333 29.630 19.74 0.00 46.76 2.44
918 987 6.469782 TTCTTTTGAGCAAGAAATGGACTT 57.530 33.333 0.00 0.00 39.37 3.01
946 1015 6.391227 TTGAGGTGAAAATGGACTTCTTTC 57.609 37.500 0.00 0.00 0.00 2.62
983 1052 2.104967 ACACATCTGGGCCATTCATTG 58.895 47.619 6.72 3.60 0.00 2.82
1013 1082 4.626081 AGTCCACGCAGCCGCTTT 62.626 61.111 0.00 0.00 38.22 3.51
1054 1123 2.997897 AGTCCACGCAGTCTCCCC 60.998 66.667 0.00 0.00 41.61 4.81
1055 1124 4.083862 GTCCACGCAGTCTCCCCC 62.084 72.222 0.00 0.00 41.61 5.40
1192 1264 2.203684 AAGCCAAGCCCCAAGGTG 60.204 61.111 0.00 0.00 34.57 4.00
1193 1265 2.713531 GAAGCCAAGCCCCAAGGTGA 62.714 60.000 0.00 0.00 34.57 4.02
1346 1418 0.453390 GGATTCGTCGTCGTTAGGGT 59.547 55.000 1.33 0.00 38.33 4.34
1347 1419 1.135286 GGATTCGTCGTCGTTAGGGTT 60.135 52.381 1.33 0.00 38.33 4.11
1348 1420 2.180397 GATTCGTCGTCGTTAGGGTTC 58.820 52.381 1.33 0.00 38.33 3.62
1350 1422 2.093306 TCGTCGTCGTTAGGGTTCTA 57.907 50.000 1.33 0.00 38.33 2.10
1352 1424 3.792401 TCGTCGTCGTTAGGGTTCTATA 58.208 45.455 1.33 0.00 38.33 1.31
1354 1426 3.303395 CGTCGTCGTTAGGGTTCTATACC 60.303 52.174 0.00 0.00 46.99 2.73
1377 1449 2.747177 TCAATCCCGTGGTAGATCTGT 58.253 47.619 5.18 0.00 0.00 3.41
1379 1451 3.132289 TCAATCCCGTGGTAGATCTGTTC 59.868 47.826 5.18 0.00 0.00 3.18
1383 1455 2.379972 CCGTGGTAGATCTGTTCCTCT 58.620 52.381 5.18 0.00 0.00 3.69
1384 1456 2.359531 CCGTGGTAGATCTGTTCCTCTC 59.640 54.545 5.18 1.10 0.00 3.20
1399 1471 4.856607 CTCTTCGCCCCGCTCGTC 62.857 72.222 0.00 0.00 0.00 4.20
1421 1494 2.107141 CGGGGCCGATCTGTTCTC 59.893 66.667 0.00 0.00 42.83 2.87
1447 1520 0.035439 ATGGATGCCCGTCGTTTCTT 60.035 50.000 0.00 0.00 34.29 2.52
1460 1533 1.667830 TTTCTTCTCCTGCGTGCGG 60.668 57.895 0.00 0.00 0.00 5.69
1475 1548 1.954651 GCGGCCACTAGTTATCGGC 60.955 63.158 12.46 12.46 44.10 5.54
1509 1582 4.397832 GGCGCCCGTGGTTTCCTA 62.398 66.667 18.11 0.00 0.00 2.94
1534 1615 2.654912 CGACGCCGACCTGTGTTTC 61.655 63.158 0.00 0.00 38.22 2.78
1540 1621 0.307760 CCGACCTGTGTTTCTTGTGC 59.692 55.000 0.00 0.00 0.00 4.57
1578 1659 4.754372 TCGTGTTCTGTTATCGTGTACT 57.246 40.909 0.00 0.00 0.00 2.73
1579 1660 5.112220 TCGTGTTCTGTTATCGTGTACTT 57.888 39.130 0.00 0.00 0.00 2.24
1580 1661 5.522456 TCGTGTTCTGTTATCGTGTACTTT 58.478 37.500 0.00 0.00 0.00 2.66
1581 1662 5.978919 TCGTGTTCTGTTATCGTGTACTTTT 59.021 36.000 0.00 0.00 0.00 2.27
1582 1663 6.062646 CGTGTTCTGTTATCGTGTACTTTTG 58.937 40.000 0.00 0.00 0.00 2.44
1583 1664 6.360329 GTGTTCTGTTATCGTGTACTTTTGG 58.640 40.000 0.00 0.00 0.00 3.28
1584 1665 5.467399 TGTTCTGTTATCGTGTACTTTTGGG 59.533 40.000 0.00 0.00 0.00 4.12
1646 1727 1.134694 GAAATCGTTCGGGCTGCAC 59.865 57.895 0.50 0.00 0.00 4.57
1713 1798 5.106157 CCTGGTCGATTTTGTTTTCTGCTAT 60.106 40.000 0.00 0.00 0.00 2.97
1728 1813 0.940126 GCTATCATGTTCAGCGTGGG 59.060 55.000 0.00 0.00 34.91 4.61
1729 1814 1.473257 GCTATCATGTTCAGCGTGGGA 60.473 52.381 0.00 0.00 34.91 4.37
1730 1815 2.205074 CTATCATGTTCAGCGTGGGAC 58.795 52.381 0.00 0.00 34.91 4.46
1742 1827 2.238646 AGCGTGGGACAAAATGGAGATA 59.761 45.455 0.00 0.00 44.16 1.98
1743 1828 3.013921 GCGTGGGACAAAATGGAGATAA 58.986 45.455 0.00 0.00 44.16 1.75
1774 1861 4.214119 TGCCTCGCATGCTTAATCTAATTC 59.786 41.667 17.13 0.00 31.71 2.17
1819 1906 2.634600 TGTCGGTGTGTTTTGCTACTT 58.365 42.857 0.00 0.00 0.00 2.24
1872 1961 6.657966 TGCATGAATTTTTCTCTGATCTGACT 59.342 34.615 0.00 0.00 0.00 3.41
1941 2030 4.503741 GTGCTCACCATGTACAATTTGT 57.496 40.909 7.30 7.30 0.00 2.83
1942 2031 4.229096 GTGCTCACCATGTACAATTTGTG 58.771 43.478 12.30 5.43 0.00 3.33
1947 2036 6.292274 GCTCACCATGTACAATTTGTGTTTTG 60.292 38.462 12.30 4.85 41.98 2.44
1974 2063 5.044846 AGTGCTCCCCATGTATTAGTTTCTT 60.045 40.000 0.00 0.00 0.00 2.52
1996 2085 9.557061 TTCTTTCTGATCTGATCATTTATCTGG 57.443 33.333 19.84 6.83 38.85 3.86
2010 2099 1.260544 ATCTGGCTTGTTTTGGGCTC 58.739 50.000 0.00 0.00 0.00 4.70
2021 2110 4.599041 TGTTTTGGGCTCTACTTATGCAT 58.401 39.130 3.79 3.79 0.00 3.96
2024 2113 3.213206 TGGGCTCTACTTATGCATTGG 57.787 47.619 3.54 0.22 0.00 3.16
2027 2116 3.316308 GGGCTCTACTTATGCATTGGTTG 59.684 47.826 3.54 5.73 0.00 3.77
2031 2120 1.935799 ACTTATGCATTGGTTGGCCA 58.064 45.000 3.54 0.00 44.38 5.36
2032 2121 1.550072 ACTTATGCATTGGTTGGCCAC 59.450 47.619 3.88 0.00 46.01 5.01
2033 2122 1.826720 CTTATGCATTGGTTGGCCACT 59.173 47.619 3.88 0.00 46.01 4.00
2034 2123 1.473258 TATGCATTGGTTGGCCACTC 58.527 50.000 3.88 0.74 46.01 3.51
2035 2124 0.542467 ATGCATTGGTTGGCCACTCA 60.542 50.000 3.88 3.49 46.01 3.41
2036 2125 0.758310 TGCATTGGTTGGCCACTCAA 60.758 50.000 18.69 18.69 46.01 3.02
2037 2126 0.609662 GCATTGGTTGGCCACTCAAT 59.390 50.000 20.90 20.90 46.01 2.57
2049 2138 5.368145 TGGCCACTCAATACTCATACATTC 58.632 41.667 0.00 0.00 0.00 2.67
2062 2151 6.917533 ACTCATACATTCCTTGCAAAAGAAG 58.082 36.000 14.75 10.31 0.00 2.85
2248 2338 8.565896 TTGCTTATTCATGTACAGATCACTTT 57.434 30.769 0.33 0.00 0.00 2.66
2249 2339 8.565896 TGCTTATTCATGTACAGATCACTTTT 57.434 30.769 0.33 0.00 0.00 2.27
2357 2447 6.985188 TGTACAGATCTGGAAGTATTTTGC 57.015 37.500 26.08 6.51 33.76 3.68
2391 2481 1.089920 CCATGCCTGTTTCTTCCTCG 58.910 55.000 0.00 0.00 0.00 4.63
2403 2493 6.808829 TGTTTCTTCCTCGTAGTTTTACAGA 58.191 36.000 0.00 0.00 0.00 3.41
2467 2557 2.229792 TGGTCGATTGCTTTTCTTGCT 58.770 42.857 0.00 0.00 0.00 3.91
2481 2571 3.969117 TCTTGCTGTGATGTGTGTTTC 57.031 42.857 0.00 0.00 0.00 2.78
2490 2580 4.151070 GTGATGTGTGTTTCTGCATTACG 58.849 43.478 0.00 0.00 0.00 3.18
2660 2764 2.816087 GCTTTGCCATTCTCTGAACAGA 59.184 45.455 4.45 4.45 35.85 3.41
5302 5723 1.185618 TTGGACCTGAGACGACTGGG 61.186 60.000 0.00 0.00 34.01 4.45
5504 5925 1.379044 CAGGTCATCCCAACAGCCC 60.379 63.158 0.00 0.00 34.66 5.19
5548 5969 4.633294 GCTCACTGCTAAGCCAAGGCTA 62.633 54.545 15.00 0.00 44.34 3.93
5912 6333 6.092955 TCGAGGACAAGCTCTAAACTTTTA 57.907 37.500 0.00 0.00 0.00 1.52
5924 6345 9.998106 AGCTCTAAACTTTTAGTTCTGTTATCA 57.002 29.630 8.29 0.00 37.47 2.15
5979 6402 6.538021 AGAGCTGCACTATTATTTTCTGTCTG 59.462 38.462 1.02 0.00 0.00 3.51
6222 6702 7.071698 TCTCCCTGCTCTTATCATCATTTTACT 59.928 37.037 0.00 0.00 0.00 2.24
6276 6756 1.341852 TCGAAATGTGTTCCCTCGTCA 59.658 47.619 0.00 0.00 0.00 4.35
6277 6757 2.028476 TCGAAATGTGTTCCCTCGTCAT 60.028 45.455 0.00 0.00 0.00 3.06
6420 6900 5.028549 TGATGAGAAATTACTCCCTCTGC 57.971 43.478 0.00 0.00 36.22 4.26
6429 6909 4.487714 TTACTCCCTCTGCAACTAATGG 57.512 45.455 0.00 0.00 0.00 3.16
6502 6982 3.614092 CCTGTTGGTGCTGACAATATCT 58.386 45.455 0.00 0.00 0.00 1.98
6514 6994 5.505324 GCTGACAATATCTGAACTTGGCATC 60.505 44.000 10.41 4.64 37.29 3.91
6539 7019 5.659440 TTCTTTGGAATAATGAAGGGTGC 57.341 39.130 0.00 0.00 0.00 5.01
6540 7020 4.671831 TCTTTGGAATAATGAAGGGTGCA 58.328 39.130 0.00 0.00 0.00 4.57
6557 7037 0.238553 GCACGAGAGCAAAAGTTCCC 59.761 55.000 0.00 0.00 0.00 3.97
6565 7045 3.008485 AGAGCAAAAGTTCCCTTCTCGAT 59.992 43.478 0.00 0.00 29.05 3.59
6573 7053 3.328050 AGTTCCCTTCTCGATCCACTTTT 59.672 43.478 0.00 0.00 0.00 2.27
6575 7055 2.903784 TCCCTTCTCGATCCACTTTTGA 59.096 45.455 0.00 0.00 0.00 2.69
6587 7067 5.105567 TCCACTTTTGAGTGTTTGGTAGA 57.894 39.130 5.89 0.00 38.07 2.59
6588 7068 5.123227 TCCACTTTTGAGTGTTTGGTAGAG 58.877 41.667 5.89 0.00 38.07 2.43
6594 7074 8.426489 ACTTTTGAGTGTTTGGTAGAGTGTATA 58.574 33.333 0.00 0.00 0.00 1.47
6599 7079 6.708285 AGTGTTTGGTAGAGTGTATAAAGGG 58.292 40.000 0.00 0.00 0.00 3.95
6603 7083 4.098155 TGGTAGAGTGTATAAAGGGTGCA 58.902 43.478 0.00 0.00 0.00 4.57
6612 7092 3.959495 ATAAAGGGTGCATGAGTCCAT 57.041 42.857 0.00 0.00 0.00 3.41
6616 7096 1.487976 AGGGTGCATGAGTCCATACTG 59.512 52.381 0.00 0.00 35.56 2.74
6630 7110 8.158132 TGAGTCCATACTGGTTTAACACAAATA 58.842 33.333 0.00 0.00 39.03 1.40
6631 7111 8.331730 AGTCCATACTGGTTTAACACAAATAC 57.668 34.615 0.00 0.00 39.03 1.89
6632 7112 7.940137 AGTCCATACTGGTTTAACACAAATACA 59.060 33.333 0.00 0.00 39.03 2.29
6633 7113 8.019094 GTCCATACTGGTTTAACACAAATACAC 58.981 37.037 0.00 0.00 39.03 2.90
6634 7114 7.940137 TCCATACTGGTTTAACACAAATACACT 59.060 33.333 0.00 0.00 39.03 3.55
6635 7115 9.221933 CCATACTGGTTTAACACAAATACACTA 57.778 33.333 0.00 0.00 31.35 2.74
6672 7152 0.034186 CTGCATTAGGCCCAACCAGA 60.034 55.000 0.00 0.00 43.89 3.86
6691 7171 3.725819 CCGCGCGGGATGAAAATA 58.274 55.556 40.50 0.00 38.47 1.40
6694 7174 1.157870 CGCGCGGGATGAAAATAGGT 61.158 55.000 24.84 0.00 0.00 3.08
6695 7175 1.021968 GCGCGGGATGAAAATAGGTT 58.978 50.000 8.83 0.00 0.00 3.50
6696 7176 1.268539 GCGCGGGATGAAAATAGGTTG 60.269 52.381 8.83 0.00 0.00 3.77
6697 7177 2.014128 CGCGGGATGAAAATAGGTTGT 58.986 47.619 0.00 0.00 0.00 3.32
6698 7178 2.422127 CGCGGGATGAAAATAGGTTGTT 59.578 45.455 0.00 0.00 0.00 2.83
6699 7179 3.119637 CGCGGGATGAAAATAGGTTGTTT 60.120 43.478 0.00 0.00 0.00 2.83
6700 7180 4.173256 GCGGGATGAAAATAGGTTGTTTG 58.827 43.478 0.00 0.00 0.00 2.93
6701 7181 4.743493 CGGGATGAAAATAGGTTGTTTGG 58.257 43.478 0.00 0.00 0.00 3.28
6702 7182 4.219725 CGGGATGAAAATAGGTTGTTTGGT 59.780 41.667 0.00 0.00 0.00 3.67
6703 7183 5.416326 CGGGATGAAAATAGGTTGTTTGGTA 59.584 40.000 0.00 0.00 0.00 3.25
6704 7184 6.404293 CGGGATGAAAATAGGTTGTTTGGTAG 60.404 42.308 0.00 0.00 0.00 3.18
6705 7185 6.330278 GGATGAAAATAGGTTGTTTGGTAGC 58.670 40.000 0.00 0.00 0.00 3.58
6706 7186 5.715434 TGAAAATAGGTTGTTTGGTAGCC 57.285 39.130 0.00 0.00 0.00 3.93
6707 7187 5.390387 TGAAAATAGGTTGTTTGGTAGCCT 58.610 37.500 0.00 0.00 33.11 4.58
6708 7188 5.242838 TGAAAATAGGTTGTTTGGTAGCCTG 59.757 40.000 0.00 0.00 30.88 4.85
6709 7189 2.194201 TAGGTTGTTTGGTAGCCTGC 57.806 50.000 0.00 0.00 30.88 4.85
6710 7190 0.184933 AGGTTGTTTGGTAGCCTGCA 59.815 50.000 0.00 0.00 0.00 4.41
6711 7191 1.203050 AGGTTGTTTGGTAGCCTGCAT 60.203 47.619 0.00 0.00 0.00 3.96
6712 7192 1.618343 GGTTGTTTGGTAGCCTGCATT 59.382 47.619 0.00 0.00 0.00 3.56
6713 7193 2.352715 GGTTGTTTGGTAGCCTGCATTC 60.353 50.000 0.00 0.00 0.00 2.67
6714 7194 2.284754 TGTTTGGTAGCCTGCATTCA 57.715 45.000 0.00 0.00 0.00 2.57
6715 7195 1.885887 TGTTTGGTAGCCTGCATTCAC 59.114 47.619 0.00 0.00 0.00 3.18
6716 7196 2.162681 GTTTGGTAGCCTGCATTCACT 58.837 47.619 0.00 0.00 0.00 3.41
6717 7197 2.558359 GTTTGGTAGCCTGCATTCACTT 59.442 45.455 0.00 0.00 0.00 3.16
6718 7198 1.825090 TGGTAGCCTGCATTCACTTG 58.175 50.000 0.00 0.00 0.00 3.16
6719 7199 0.453390 GGTAGCCTGCATTCACTTGC 59.547 55.000 0.00 0.00 43.07 4.01
6720 7200 1.457346 GTAGCCTGCATTCACTTGCT 58.543 50.000 0.00 0.00 43.18 3.91
6721 7201 1.131883 GTAGCCTGCATTCACTTGCTG 59.868 52.381 0.00 0.00 43.18 4.41
6724 7204 2.951269 CTGCATTCACTTGCTGGGA 58.049 52.632 0.00 0.00 43.18 4.37
6725 7205 1.250328 CTGCATTCACTTGCTGGGAA 58.750 50.000 0.00 0.00 42.98 3.97
6726 7206 0.961019 TGCATTCACTTGCTGGGAAC 59.039 50.000 0.00 0.00 41.42 3.62
6727 7207 0.961019 GCATTCACTTGCTGGGAACA 59.039 50.000 0.00 0.00 41.42 3.18
6762 7242 1.922570 TTTTACGAGCCAGATCGAGC 58.077 50.000 12.80 0.00 45.56 5.03
6763 7243 0.248498 TTTACGAGCCAGATCGAGCG 60.248 55.000 12.80 0.00 45.56 5.03
6764 7244 2.663630 TTACGAGCCAGATCGAGCGC 62.664 60.000 12.80 0.00 45.56 5.92
6765 7245 4.559229 CGAGCCAGATCGAGCGCA 62.559 66.667 11.47 0.00 45.56 6.09
6766 7246 2.202797 GAGCCAGATCGAGCGCAA 60.203 61.111 11.47 0.00 0.00 4.85
6767 7247 2.202851 AGCCAGATCGAGCGCAAG 60.203 61.111 11.47 2.24 43.44 4.01
6768 7248 3.267860 GCCAGATCGAGCGCAAGG 61.268 66.667 11.47 0.00 38.28 3.61
6769 7249 2.496341 CCAGATCGAGCGCAAGGA 59.504 61.111 11.47 3.42 38.28 3.36
6770 7250 1.591059 CCAGATCGAGCGCAAGGAG 60.591 63.158 11.47 0.00 38.28 3.69
6771 7251 1.140589 CAGATCGAGCGCAAGGAGT 59.859 57.895 11.47 0.00 38.28 3.85
6772 7252 1.140589 AGATCGAGCGCAAGGAGTG 59.859 57.895 11.47 0.00 38.28 3.51
6773 7253 1.880340 GATCGAGCGCAAGGAGTGG 60.880 63.158 11.47 0.00 38.28 4.00
6774 7254 3.376935 ATCGAGCGCAAGGAGTGGG 62.377 63.158 11.47 0.00 43.00 4.61
6785 7265 3.851128 GAGTGGGCCCCGAGCTAC 61.851 72.222 22.27 9.82 43.05 3.58
6796 7276 0.747255 CCGAGCTACTGTATGCCTGT 59.253 55.000 0.00 0.00 0.00 4.00
6799 7279 2.357952 CGAGCTACTGTATGCCTGTACA 59.642 50.000 0.00 0.00 33.75 2.90
6810 7290 6.701340 TGTATGCCTGTACATGATATCTTCC 58.299 40.000 0.00 0.00 30.00 3.46
6818 7298 6.390504 TGTACATGATATCTTCCCCTACCTT 58.609 40.000 0.00 0.00 0.00 3.50
6821 8375 5.308237 ACATGATATCTTCCCCTACCTTCAC 59.692 44.000 0.00 0.00 0.00 3.18
6827 8381 2.259014 TCCCCTACCTTCACTAACCC 57.741 55.000 0.00 0.00 0.00 4.11
6832 8386 2.117051 CTACCTTCACTAACCCCCTCC 58.883 57.143 0.00 0.00 0.00 4.30
6866 8420 5.975113 TCTTCCTCCTCCATTCAGATCTAT 58.025 41.667 0.00 0.00 0.00 1.98
6868 8422 7.717451 TCTTCCTCCTCCATTCAGATCTATAT 58.283 38.462 0.00 0.00 0.00 0.86
6930 8484 5.824624 AGATGCACATCGATCTTATGGTTTT 59.175 36.000 0.00 0.00 42.48 2.43
6949 8503 4.593597 TTTATTCAGACGATCGGTTTGC 57.406 40.909 20.98 3.19 31.07 3.68
6992 8546 9.532697 GATGATTAATTTTGTGTTCATGTTTGC 57.467 29.630 0.00 0.00 0.00 3.68
6994 8548 9.053840 TGATTAATTTTGTGTTCATGTTTGCAT 57.946 25.926 0.00 0.00 35.32 3.96
7046 8600 2.154798 TTGAGGAACGTGAGGGAGCG 62.155 60.000 0.00 0.00 0.00 5.03
7049 8603 4.415332 GAACGTGAGGGAGCGCGA 62.415 66.667 12.10 0.00 43.93 5.87
7084 8638 3.876198 GGCGCAATAGGCCGTGTG 61.876 66.667 10.83 11.88 41.39 3.82
7085 8639 4.536687 GCGCAATAGGCCGTGTGC 62.537 66.667 21.47 21.47 43.31 4.57
7124 8678 2.123033 GGTGTTTGGTTGGGGGCT 60.123 61.111 0.00 0.00 0.00 5.19
7153 8707 2.434185 GGAGGCGCAACATGTCGA 60.434 61.111 10.83 0.00 0.00 4.20
7159 8713 1.610715 GCGCAACATGTCGACGTACA 61.611 55.000 10.54 0.00 0.00 2.90
7160 8714 0.989164 CGCAACATGTCGACGTACAT 59.011 50.000 10.54 0.00 40.75 2.29
7176 8730 3.608241 CGTACATGAGGAGATCGAGCTTC 60.608 52.174 3.92 1.41 0.00 3.86
7194 8748 0.827925 TCCTGAGGAGTGCTCGTTGT 60.828 55.000 7.20 0.00 0.00 3.32
7213 8767 3.148279 GATCCGTCTCCTGCCCGT 61.148 66.667 0.00 0.00 0.00 5.28
7244 8799 0.108804 CGTACTCGTGATGGGTGCTT 60.109 55.000 0.00 0.00 0.00 3.91
7289 8844 1.291877 GAGTGGCGTGCATCGAGTTT 61.292 55.000 11.94 0.00 42.86 2.66
7298 8853 0.389948 GCATCGAGTTTGACCCGAGT 60.390 55.000 0.00 0.00 35.70 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.993424 ACTTGGACTTGGATAGAGTTAATATGT 58.007 33.333 0.00 0.00 0.00 2.29
3 4 9.838339 CAACTTGGACTTGGATAGAGTTAATAT 57.162 33.333 0.00 0.00 0.00 1.28
4 5 8.265055 CCAACTTGGACTTGGATAGAGTTAATA 58.735 37.037 0.92 0.00 40.96 0.98
5 6 7.112779 CCAACTTGGACTTGGATAGAGTTAAT 58.887 38.462 0.92 0.00 40.96 1.40
6 7 6.472887 CCAACTTGGACTTGGATAGAGTTAA 58.527 40.000 0.92 0.00 40.96 2.01
7 8 5.045869 CCCAACTTGGACTTGGATAGAGTTA 60.046 44.000 9.61 0.00 40.96 2.24
8 9 4.263506 CCCAACTTGGACTTGGATAGAGTT 60.264 45.833 9.61 0.00 40.96 3.01
9 10 3.264450 CCCAACTTGGACTTGGATAGAGT 59.736 47.826 9.61 0.00 40.96 3.24
10 11 3.519510 TCCCAACTTGGACTTGGATAGAG 59.480 47.826 9.61 0.00 40.96 2.43
11 12 3.519510 CTCCCAACTTGGACTTGGATAGA 59.480 47.826 9.61 0.00 40.96 1.98
12 13 3.878778 CTCCCAACTTGGACTTGGATAG 58.121 50.000 9.61 0.00 40.96 2.08
13 14 2.026262 GCTCCCAACTTGGACTTGGATA 60.026 50.000 9.61 0.00 40.96 2.59
14 15 1.272147 GCTCCCAACTTGGACTTGGAT 60.272 52.381 9.61 0.00 40.96 3.41
15 16 0.110486 GCTCCCAACTTGGACTTGGA 59.890 55.000 9.61 0.00 40.96 3.53
16 17 0.895559 GGCTCCCAACTTGGACTTGG 60.896 60.000 9.61 0.00 40.96 3.61
17 18 0.178992 TGGCTCCCAACTTGGACTTG 60.179 55.000 9.61 0.00 40.96 3.16
18 19 0.555769 TTGGCTCCCAACTTGGACTT 59.444 50.000 9.61 0.00 40.96 3.01
19 20 2.240510 TTGGCTCCCAACTTGGACT 58.759 52.632 9.61 0.00 40.96 3.85
20 21 4.920828 TTGGCTCCCAACTTGGAC 57.079 55.556 9.61 0.00 40.96 4.02
31 32 3.435186 GGCGCTTGGAGTTGGCTC 61.435 66.667 7.64 0.00 40.93 4.70
32 33 3.790416 TTGGCGCTTGGAGTTGGCT 62.790 57.895 7.64 0.00 0.00 4.75
33 34 3.273080 CTTGGCGCTTGGAGTTGGC 62.273 63.158 7.64 0.00 0.00 4.52
34 35 0.962356 ATCTTGGCGCTTGGAGTTGG 60.962 55.000 7.64 0.00 0.00 3.77
35 36 0.169672 CATCTTGGCGCTTGGAGTTG 59.830 55.000 7.64 2.31 0.00 3.16
36 37 0.036732 TCATCTTGGCGCTTGGAGTT 59.963 50.000 7.64 0.00 0.00 3.01
37 38 0.674895 GTCATCTTGGCGCTTGGAGT 60.675 55.000 7.64 0.00 0.00 3.85
38 39 0.674581 TGTCATCTTGGCGCTTGGAG 60.675 55.000 7.64 0.10 0.00 3.86
39 40 0.674581 CTGTCATCTTGGCGCTTGGA 60.675 55.000 7.64 3.06 0.00 3.53
40 41 0.957395 ACTGTCATCTTGGCGCTTGG 60.957 55.000 7.64 0.00 0.00 3.61
41 42 0.877071 AACTGTCATCTTGGCGCTTG 59.123 50.000 7.64 0.00 0.00 4.01
42 43 0.877071 CAACTGTCATCTTGGCGCTT 59.123 50.000 7.64 0.00 0.00 4.68
43 44 0.957395 CCAACTGTCATCTTGGCGCT 60.957 55.000 7.64 0.00 30.82 5.92
44 45 0.955428 TCCAACTGTCATCTTGGCGC 60.955 55.000 0.00 0.00 37.45 6.53
45 46 1.081892 CTCCAACTGTCATCTTGGCG 58.918 55.000 5.01 0.00 37.45 5.69
46 47 1.457346 CCTCCAACTGTCATCTTGGC 58.543 55.000 5.01 0.00 37.45 4.52
47 48 1.457346 GCCTCCAACTGTCATCTTGG 58.543 55.000 3.83 3.83 38.70 3.61
48 49 1.081892 CGCCTCCAACTGTCATCTTG 58.918 55.000 0.00 0.00 0.00 3.02
49 50 0.976641 TCGCCTCCAACTGTCATCTT 59.023 50.000 0.00 0.00 0.00 2.40
50 51 0.534412 CTCGCCTCCAACTGTCATCT 59.466 55.000 0.00 0.00 0.00 2.90
51 52 0.532573 TCTCGCCTCCAACTGTCATC 59.467 55.000 0.00 0.00 0.00 2.92
52 53 0.534412 CTCTCGCCTCCAACTGTCAT 59.466 55.000 0.00 0.00 0.00 3.06
53 54 1.536073 CCTCTCGCCTCCAACTGTCA 61.536 60.000 0.00 0.00 0.00 3.58
54 55 1.216710 CCTCTCGCCTCCAACTGTC 59.783 63.158 0.00 0.00 0.00 3.51
55 56 2.286523 CCCTCTCGCCTCCAACTGT 61.287 63.158 0.00 0.00 0.00 3.55
56 57 2.581354 CCCTCTCGCCTCCAACTG 59.419 66.667 0.00 0.00 0.00 3.16
57 58 3.394836 GCCCTCTCGCCTCCAACT 61.395 66.667 0.00 0.00 0.00 3.16
58 59 4.475135 GGCCCTCTCGCCTCCAAC 62.475 72.222 0.00 0.00 46.10 3.77
65 66 1.133216 GAGAATTTTTGGCCCTCTCGC 59.867 52.381 0.00 0.00 0.00 5.03
66 67 2.421424 CAGAGAATTTTTGGCCCTCTCG 59.579 50.000 0.00 0.00 32.42 4.04
67 68 2.757314 CCAGAGAATTTTTGGCCCTCTC 59.243 50.000 0.00 2.18 32.42 3.20
68 69 2.812658 CCAGAGAATTTTTGGCCCTCT 58.187 47.619 0.00 0.00 34.83 3.69
74 75 0.456653 CGCCGCCAGAGAATTTTTGG 60.457 55.000 0.80 0.80 35.06 3.28
75 76 0.456653 CCGCCGCCAGAGAATTTTTG 60.457 55.000 0.00 0.00 0.00 2.44
76 77 1.883021 CCGCCGCCAGAGAATTTTT 59.117 52.632 0.00 0.00 0.00 1.94
77 78 2.700773 GCCGCCGCCAGAGAATTTT 61.701 57.895 0.00 0.00 0.00 1.82
78 79 3.134127 GCCGCCGCCAGAGAATTT 61.134 61.111 0.00 0.00 0.00 1.82
79 80 4.408821 TGCCGCCGCCAGAGAATT 62.409 61.111 0.00 0.00 0.00 2.17
80 81 4.845580 CTGCCGCCGCCAGAGAAT 62.846 66.667 0.00 0.00 0.00 2.40
83 84 4.880537 CTACTGCCGCCGCCAGAG 62.881 72.222 0.62 0.00 0.00 3.35
89 90 2.845752 TTAAGGTGCTACTGCCGCCG 62.846 60.000 0.00 0.00 37.97 6.46
90 91 1.078708 TTAAGGTGCTACTGCCGCC 60.079 57.895 0.00 0.00 38.71 6.13
91 92 1.693083 CGTTAAGGTGCTACTGCCGC 61.693 60.000 0.00 0.00 38.71 6.53
92 93 0.108992 TCGTTAAGGTGCTACTGCCG 60.109 55.000 0.00 0.00 38.71 5.69
93 94 2.088950 TTCGTTAAGGTGCTACTGCC 57.911 50.000 0.00 0.00 38.71 4.85
94 95 2.159037 GGTTTCGTTAAGGTGCTACTGC 59.841 50.000 0.00 0.00 40.20 4.40
95 96 2.740447 GGGTTTCGTTAAGGTGCTACTG 59.260 50.000 0.00 0.00 0.00 2.74
96 97 2.289882 GGGGTTTCGTTAAGGTGCTACT 60.290 50.000 0.00 0.00 0.00 2.57
97 98 2.079158 GGGGTTTCGTTAAGGTGCTAC 58.921 52.381 0.00 0.00 0.00 3.58
98 99 1.003464 GGGGGTTTCGTTAAGGTGCTA 59.997 52.381 0.00 0.00 0.00 3.49
99 100 0.251033 GGGGGTTTCGTTAAGGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
100 101 1.579964 CGGGGGTTTCGTTAAGGTGC 61.580 60.000 0.00 0.00 0.00 5.01
101 102 1.579964 GCGGGGGTTTCGTTAAGGTG 61.580 60.000 0.00 0.00 0.00 4.00
102 103 1.302752 GCGGGGGTTTCGTTAAGGT 60.303 57.895 0.00 0.00 0.00 3.50
103 104 1.002990 AGCGGGGGTTTCGTTAAGG 60.003 57.895 0.00 0.00 0.00 2.69
104 105 0.036671 AGAGCGGGGGTTTCGTTAAG 60.037 55.000 0.00 0.00 0.00 1.85
105 106 1.265236 TAGAGCGGGGGTTTCGTTAA 58.735 50.000 0.00 0.00 0.00 2.01
106 107 1.066929 GTTAGAGCGGGGGTTTCGTTA 60.067 52.381 0.00 0.00 0.00 3.18
107 108 0.321034 GTTAGAGCGGGGGTTTCGTT 60.321 55.000 0.00 0.00 0.00 3.85
108 109 1.294459 GTTAGAGCGGGGGTTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
109 110 0.320946 TTGTTAGAGCGGGGGTTTCG 60.321 55.000 0.00 0.00 0.00 3.46
110 111 1.743394 CATTGTTAGAGCGGGGGTTTC 59.257 52.381 0.00 0.00 0.00 2.78
111 112 1.074889 ACATTGTTAGAGCGGGGGTTT 59.925 47.619 0.00 0.00 0.00 3.27
112 113 0.696501 ACATTGTTAGAGCGGGGGTT 59.303 50.000 0.00 0.00 0.00 4.11
113 114 0.035439 CACATTGTTAGAGCGGGGGT 60.035 55.000 0.00 0.00 0.00 4.95
114 115 1.376609 GCACATTGTTAGAGCGGGGG 61.377 60.000 0.00 0.00 0.00 5.40
115 116 0.676466 TGCACATTGTTAGAGCGGGG 60.676 55.000 0.00 0.00 0.00 5.73
116 117 1.135689 GTTGCACATTGTTAGAGCGGG 60.136 52.381 0.00 0.00 0.00 6.13
117 118 1.535028 TGTTGCACATTGTTAGAGCGG 59.465 47.619 0.00 0.00 0.00 5.52
118 119 2.967459 TGTTGCACATTGTTAGAGCG 57.033 45.000 0.00 0.00 0.00 5.03
119 120 4.858935 TCTTTGTTGCACATTGTTAGAGC 58.141 39.130 0.00 0.00 0.00 4.09
120 121 9.282247 GATATTCTTTGTTGCACATTGTTAGAG 57.718 33.333 0.00 0.00 0.00 2.43
121 122 8.791675 TGATATTCTTTGTTGCACATTGTTAGA 58.208 29.630 0.00 0.00 0.00 2.10
122 123 8.969121 TGATATTCTTTGTTGCACATTGTTAG 57.031 30.769 0.00 0.00 0.00 2.34
123 124 8.791675 TCTGATATTCTTTGTTGCACATTGTTA 58.208 29.630 0.00 0.00 0.00 2.41
124 125 7.660112 TCTGATATTCTTTGTTGCACATTGTT 58.340 30.769 0.00 0.00 0.00 2.83
125 126 7.218228 TCTGATATTCTTTGTTGCACATTGT 57.782 32.000 0.00 0.00 0.00 2.71
126 127 9.961265 ATATCTGATATTCTTTGTTGCACATTG 57.039 29.630 4.33 0.00 0.00 2.82
189 190 6.358974 TGATATTCTTGGTGTGTCTCAAGA 57.641 37.500 0.00 0.00 45.03 3.02
190 191 8.771766 CATATGATATTCTTGGTGTGTCTCAAG 58.228 37.037 0.00 0.00 41.06 3.02
191 192 7.227314 GCATATGATATTCTTGGTGTGTCTCAA 59.773 37.037 6.97 0.00 0.00 3.02
192 193 6.707608 GCATATGATATTCTTGGTGTGTCTCA 59.292 38.462 6.97 0.00 0.00 3.27
193 194 6.707608 TGCATATGATATTCTTGGTGTGTCTC 59.292 38.462 6.97 0.00 0.00 3.36
194 195 6.594744 TGCATATGATATTCTTGGTGTGTCT 58.405 36.000 6.97 0.00 0.00 3.41
195 196 6.866010 TGCATATGATATTCTTGGTGTGTC 57.134 37.500 6.97 0.00 0.00 3.67
196 197 6.263842 CCTTGCATATGATATTCTTGGTGTGT 59.736 38.462 6.97 0.00 0.00 3.72
197 198 6.294342 CCCTTGCATATGATATTCTTGGTGTG 60.294 42.308 6.97 0.00 0.00 3.82
198 199 5.771666 CCCTTGCATATGATATTCTTGGTGT 59.228 40.000 6.97 0.00 0.00 4.16
199 200 5.336213 GCCCTTGCATATGATATTCTTGGTG 60.336 44.000 6.97 0.00 37.47 4.17
200 201 4.768968 GCCCTTGCATATGATATTCTTGGT 59.231 41.667 6.97 0.00 37.47 3.67
201 202 4.159135 GGCCCTTGCATATGATATTCTTGG 59.841 45.833 6.97 0.00 40.13 3.61
202 203 4.768448 TGGCCCTTGCATATGATATTCTTG 59.232 41.667 6.97 0.00 40.13 3.02
203 204 5.001833 TGGCCCTTGCATATGATATTCTT 57.998 39.130 6.97 0.00 40.13 2.52
204 205 4.662966 TGGCCCTTGCATATGATATTCT 57.337 40.909 6.97 0.00 40.13 2.40
205 206 4.379813 CGTTGGCCCTTGCATATGATATTC 60.380 45.833 6.97 0.00 40.13 1.75
206 207 3.507233 CGTTGGCCCTTGCATATGATATT 59.493 43.478 6.97 0.00 40.13 1.28
207 208 3.084039 CGTTGGCCCTTGCATATGATAT 58.916 45.455 6.97 0.00 40.13 1.63
208 209 2.503331 CGTTGGCCCTTGCATATGATA 58.497 47.619 6.97 0.00 40.13 2.15
209 210 1.321474 CGTTGGCCCTTGCATATGAT 58.679 50.000 6.97 0.00 40.13 2.45
210 211 1.383456 GCGTTGGCCCTTGCATATGA 61.383 55.000 6.97 0.00 40.13 2.15
211 212 1.066257 GCGTTGGCCCTTGCATATG 59.934 57.895 0.00 0.00 40.13 1.78
212 213 0.684153 AAGCGTTGGCCCTTGCATAT 60.684 50.000 12.06 0.00 41.24 1.78
213 214 1.304052 AAGCGTTGGCCCTTGCATA 60.304 52.632 12.06 0.00 41.24 3.14
214 215 2.601367 AAGCGTTGGCCCTTGCAT 60.601 55.556 12.06 0.00 41.24 3.96
215 216 3.294493 GAAGCGTTGGCCCTTGCA 61.294 61.111 12.06 0.00 41.24 4.08
216 217 2.548127 GATGAAGCGTTGGCCCTTGC 62.548 60.000 0.00 0.08 41.24 4.01
217 218 1.243342 TGATGAAGCGTTGGCCCTTG 61.243 55.000 0.00 0.00 41.24 3.61
218 219 1.074775 TGATGAAGCGTTGGCCCTT 59.925 52.632 0.00 0.00 41.24 3.95
219 220 1.675641 GTGATGAAGCGTTGGCCCT 60.676 57.895 0.00 0.00 41.24 5.19
220 221 1.675641 AGTGATGAAGCGTTGGCCC 60.676 57.895 0.00 0.00 41.24 5.80
221 222 1.503542 CAGTGATGAAGCGTTGGCC 59.496 57.895 0.00 0.00 41.24 5.36
222 223 1.503542 CCAGTGATGAAGCGTTGGC 59.496 57.895 0.00 0.00 40.37 4.52
223 224 1.926511 GCCCAGTGATGAAGCGTTGG 61.927 60.000 0.00 0.00 0.00 3.77
224 225 1.503542 GCCCAGTGATGAAGCGTTG 59.496 57.895 0.00 0.00 0.00 4.10
225 226 1.675641 GGCCCAGTGATGAAGCGTT 60.676 57.895 0.00 0.00 0.00 4.84
226 227 2.045926 GGCCCAGTGATGAAGCGT 60.046 61.111 0.00 0.00 0.00 5.07
227 228 2.825836 GGGCCCAGTGATGAAGCG 60.826 66.667 19.95 0.00 0.00 4.68
228 229 2.825836 CGGGCCCAGTGATGAAGC 60.826 66.667 24.92 0.00 0.00 3.86
229 230 2.124570 CCGGGCCCAGTGATGAAG 60.125 66.667 24.92 0.78 0.00 3.02
230 231 3.727258 CCCGGGCCCAGTGATGAA 61.727 66.667 24.92 0.00 0.00 2.57
240 241 1.991339 AAATACCTACTGCCCGGGCC 61.991 60.000 41.75 24.44 41.09 5.80
241 242 0.106868 AAAATACCTACTGCCCGGGC 60.107 55.000 39.40 39.40 42.35 6.13
242 243 2.430248 AAAAATACCTACTGCCCGGG 57.570 50.000 19.09 19.09 0.00 5.73
258 259 1.300266 GCCCTACGCACGGCTAAAAA 61.300 55.000 0.23 0.00 42.21 1.94
259 260 1.742510 GCCCTACGCACGGCTAAAA 60.743 57.895 0.23 0.00 42.21 1.52
260 261 2.125431 GCCCTACGCACGGCTAAA 60.125 61.111 0.23 0.00 42.21 1.85
261 262 4.501714 CGCCCTACGCACGGCTAA 62.502 66.667 5.78 0.00 43.38 3.09
266 267 4.564116 CCTACCGCCCTACGCACG 62.564 72.222 0.00 0.00 41.76 5.34
267 268 3.455469 ACCTACCGCCCTACGCAC 61.455 66.667 0.00 0.00 41.76 5.34
268 269 3.454573 CACCTACCGCCCTACGCA 61.455 66.667 0.00 0.00 41.76 5.24
269 270 4.217159 CCACCTACCGCCCTACGC 62.217 72.222 0.00 0.00 41.76 4.42
270 271 3.534056 CCCACCTACCGCCCTACG 61.534 72.222 0.00 0.00 43.15 3.51
271 272 2.364710 ACCCACCTACCGCCCTAC 60.365 66.667 0.00 0.00 0.00 3.18
272 273 2.364579 CACCCACCTACCGCCCTA 60.365 66.667 0.00 0.00 0.00 3.53
275 276 1.629181 ATTACCACCCACCTACCGCC 61.629 60.000 0.00 0.00 0.00 6.13
276 277 1.122227 TATTACCACCCACCTACCGC 58.878 55.000 0.00 0.00 0.00 5.68
277 278 4.426736 AATTATTACCACCCACCTACCG 57.573 45.455 0.00 0.00 0.00 4.02
299 300 4.034742 AGCGCGTTGTTCTTCTAAGAAAAA 59.965 37.500 8.43 5.45 45.77 1.94
300 301 3.558418 AGCGCGTTGTTCTTCTAAGAAAA 59.442 39.130 8.43 0.00 45.77 2.29
301 302 3.128349 AGCGCGTTGTTCTTCTAAGAAA 58.872 40.909 8.43 0.00 45.77 2.52
302 303 2.750948 AGCGCGTTGTTCTTCTAAGAA 58.249 42.857 8.43 1.00 42.41 2.52
303 304 2.433868 AGCGCGTTGTTCTTCTAAGA 57.566 45.000 8.43 0.00 0.00 2.10
304 305 3.521524 AAAGCGCGTTGTTCTTCTAAG 57.478 42.857 8.05 0.00 0.00 2.18
305 306 5.600908 AATAAAGCGCGTTGTTCTTCTAA 57.399 34.783 19.08 0.00 0.00 2.10
306 307 5.177881 TGAAATAAAGCGCGTTGTTCTTCTA 59.822 36.000 23.85 10.01 0.00 2.10
307 308 4.024387 TGAAATAAAGCGCGTTGTTCTTCT 60.024 37.500 23.85 10.19 0.00 2.85
308 309 4.215965 TGAAATAAAGCGCGTTGTTCTTC 58.784 39.130 23.85 17.25 0.00 2.87
309 310 4.217754 TGAAATAAAGCGCGTTGTTCTT 57.782 36.364 23.85 11.03 0.00 2.52
310 311 3.889196 TGAAATAAAGCGCGTTGTTCT 57.111 38.095 23.85 13.95 0.00 3.01
311 312 5.494863 AAATGAAATAAAGCGCGTTGTTC 57.505 34.783 19.08 19.54 0.00 3.18
312 313 6.146898 AGTAAATGAAATAAAGCGCGTTGTT 58.853 32.000 19.08 15.34 0.00 2.83
313 314 5.695818 AGTAAATGAAATAAAGCGCGTTGT 58.304 33.333 19.08 9.38 0.00 3.32
314 315 5.792962 TGAGTAAATGAAATAAAGCGCGTTG 59.207 36.000 19.08 0.00 0.00 4.10
315 316 5.933790 TGAGTAAATGAAATAAAGCGCGTT 58.066 33.333 14.19 14.19 0.00 4.84
316 317 5.539582 TGAGTAAATGAAATAAAGCGCGT 57.460 34.783 8.43 0.00 0.00 6.01
317 318 6.021596 ACTTGAGTAAATGAAATAAAGCGCG 58.978 36.000 0.00 0.00 0.00 6.86
318 319 7.796958 AACTTGAGTAAATGAAATAAAGCGC 57.203 32.000 0.00 0.00 0.00 5.92
323 324 9.250246 CCCCCTAAACTTGAGTAAATGAAATAA 57.750 33.333 0.00 0.00 0.00 1.40
324 325 8.616598 TCCCCCTAAACTTGAGTAAATGAAATA 58.383 33.333 0.00 0.00 0.00 1.40
325 326 7.475299 TCCCCCTAAACTTGAGTAAATGAAAT 58.525 34.615 0.00 0.00 0.00 2.17
326 327 6.854578 TCCCCCTAAACTTGAGTAAATGAAA 58.145 36.000 0.00 0.00 0.00 2.69
327 328 6.457159 TCCCCCTAAACTTGAGTAAATGAA 57.543 37.500 0.00 0.00 0.00 2.57
328 329 6.652205 ATCCCCCTAAACTTGAGTAAATGA 57.348 37.500 0.00 0.00 0.00 2.57
329 330 7.343357 TGTATCCCCCTAAACTTGAGTAAATG 58.657 38.462 0.00 0.00 0.00 2.32
330 331 7.519347 TGTATCCCCCTAAACTTGAGTAAAT 57.481 36.000 0.00 0.00 0.00 1.40
331 332 6.956102 TGTATCCCCCTAAACTTGAGTAAA 57.044 37.500 0.00 0.00 0.00 2.01
332 333 6.956102 TTGTATCCCCCTAAACTTGAGTAA 57.044 37.500 0.00 0.00 0.00 2.24
333 334 6.731919 TCTTTGTATCCCCCTAAACTTGAGTA 59.268 38.462 0.00 0.00 0.00 2.59
334 335 5.550403 TCTTTGTATCCCCCTAAACTTGAGT 59.450 40.000 0.00 0.00 0.00 3.41
335 336 6.062258 TCTTTGTATCCCCCTAAACTTGAG 57.938 41.667 0.00 0.00 0.00 3.02
336 337 6.652205 ATCTTTGTATCCCCCTAAACTTGA 57.348 37.500 0.00 0.00 0.00 3.02
337 338 8.996651 ATTATCTTTGTATCCCCCTAAACTTG 57.003 34.615 0.00 0.00 0.00 3.16
338 339 8.225416 GGATTATCTTTGTATCCCCCTAAACTT 58.775 37.037 0.00 0.00 33.26 2.66
339 340 7.474364 CGGATTATCTTTGTATCCCCCTAAACT 60.474 40.741 0.00 0.00 35.46 2.66
340 341 6.653740 CGGATTATCTTTGTATCCCCCTAAAC 59.346 42.308 0.00 0.00 35.46 2.01
341 342 6.240060 CCGGATTATCTTTGTATCCCCCTAAA 60.240 42.308 0.00 0.00 35.46 1.85
342 343 5.249852 CCGGATTATCTTTGTATCCCCCTAA 59.750 44.000 0.00 0.00 35.46 2.69
343 344 4.781087 CCGGATTATCTTTGTATCCCCCTA 59.219 45.833 0.00 0.00 35.46 3.53
344 345 3.587506 CCGGATTATCTTTGTATCCCCCT 59.412 47.826 0.00 0.00 35.46 4.79
345 346 3.585732 TCCGGATTATCTTTGTATCCCCC 59.414 47.826 0.00 0.00 35.46 5.40
346 347 4.323562 CCTCCGGATTATCTTTGTATCCCC 60.324 50.000 3.57 0.00 35.46 4.81
347 348 4.530946 TCCTCCGGATTATCTTTGTATCCC 59.469 45.833 3.57 0.00 35.46 3.85
348 349 5.740290 TCCTCCGGATTATCTTTGTATCC 57.260 43.478 3.57 0.00 35.53 2.59
349 350 6.037098 CGATCCTCCGGATTATCTTTGTATC 58.963 44.000 18.82 2.67 43.27 2.24
350 351 5.715279 TCGATCCTCCGGATTATCTTTGTAT 59.285 40.000 18.82 0.00 43.27 2.29
351 352 5.074804 TCGATCCTCCGGATTATCTTTGTA 58.925 41.667 18.82 3.01 43.27 2.41
352 353 3.895656 TCGATCCTCCGGATTATCTTTGT 59.104 43.478 18.82 0.00 43.27 2.83
353 354 4.521130 TCGATCCTCCGGATTATCTTTG 57.479 45.455 18.82 8.19 43.27 2.77
354 355 5.337652 GGAATCGATCCTCCGGATTATCTTT 60.338 44.000 18.82 13.77 43.27 2.52
355 356 4.160626 GGAATCGATCCTCCGGATTATCTT 59.839 45.833 18.82 10.67 43.27 2.40
356 357 3.702045 GGAATCGATCCTCCGGATTATCT 59.298 47.826 18.82 5.69 43.27 1.98
357 358 4.048241 GGAATCGATCCTCCGGATTATC 57.952 50.000 3.57 10.35 43.27 1.75
369 370 0.875059 GCGGGGAAATGGAATCGATC 59.125 55.000 0.00 0.00 0.00 3.69
370 371 0.537371 GGCGGGGAAATGGAATCGAT 60.537 55.000 0.00 0.00 0.00 3.59
444 445 2.765807 CGCATCCCCTCTGACCCT 60.766 66.667 0.00 0.00 0.00 4.34
490 491 4.038080 CGTTGGGTTTGGAGCGGC 62.038 66.667 0.00 0.00 0.00 6.53
521 522 0.386731 CGAAATTGGTGAACGCCCAC 60.387 55.000 1.86 0.00 36.37 4.61
528 529 3.128589 GCATCCTTAGCGAAATTGGTGAA 59.871 43.478 0.00 0.00 0.00 3.18
529 530 2.682856 GCATCCTTAGCGAAATTGGTGA 59.317 45.455 0.00 0.00 0.00 4.02
548 549 4.501714 GTCGCGGGTATGTCGGCA 62.502 66.667 6.13 0.00 33.87 5.69
551 552 2.025727 GGAGTCGCGGGTATGTCG 59.974 66.667 6.13 0.00 0.00 4.35
563 564 1.448717 GAGCTTGAAGGCGGGAGTC 60.449 63.158 0.00 0.00 37.29 3.36
579 580 1.475751 CGGGGTGAGGAAATGGATGAG 60.476 57.143 0.00 0.00 0.00 2.90
597 598 4.446413 GTGGTACGCCCAGACCGG 62.446 72.222 0.00 0.00 46.45 5.28
598 599 3.687102 TGTGGTACGCCCAGACCG 61.687 66.667 0.00 0.00 46.45 4.79
610 611 0.970640 TGTAGCGTATGTGGTGTGGT 59.029 50.000 0.00 0.00 0.00 4.16
713 715 1.743252 CTCTCCACCGAAGCCAAGC 60.743 63.158 0.00 0.00 0.00 4.01
723 725 1.480789 GTCCTTCTCCTCTCTCCACC 58.519 60.000 0.00 0.00 0.00 4.61
730 732 0.032615 ATGAGGCGTCCTTCTCCTCT 60.033 55.000 3.56 0.00 45.42 3.69
737 739 1.888436 TTGCGAGATGAGGCGTCCTT 61.888 55.000 3.56 0.00 31.76 3.36
739 741 1.019278 TTTTGCGAGATGAGGCGTCC 61.019 55.000 3.56 0.00 0.00 4.79
753 756 9.274206 TGGTTTTATTAATTTAGGTGGTTTTGC 57.726 29.630 0.00 0.00 0.00 3.68
769 772 4.390129 TGCCCCTTGAGTGGTTTTATTA 57.610 40.909 0.00 0.00 0.00 0.98
770 773 3.252554 TGCCCCTTGAGTGGTTTTATT 57.747 42.857 0.00 0.00 0.00 1.40
771 774 2.990740 TGCCCCTTGAGTGGTTTTAT 57.009 45.000 0.00 0.00 0.00 1.40
839 908 1.177401 GACAAATCCCACCCTGAAGC 58.823 55.000 0.00 0.00 0.00 3.86
848 917 3.335183 TGTTCCCCAATAGACAAATCCCA 59.665 43.478 0.00 0.00 0.00 4.37
862 931 3.304911 TCACACTCAAAATGTTCCCCA 57.695 42.857 0.00 0.00 0.00 4.96
867 936 7.102346 TGTCCATTTTTCACACTCAAAATGTT 58.898 30.769 13.54 0.00 44.02 2.71
897 966 7.543947 AAAAAGTCCATTTCTTGCTCAAAAG 57.456 32.000 0.00 0.00 0.00 2.27
925 994 7.745620 TTAGAAAGAAGTCCATTTTCACCTC 57.254 36.000 0.00 0.00 34.18 3.85
946 1015 8.877779 CCAGATGTGTGAGAACTTTCTTATTAG 58.122 37.037 0.00 0.00 37.73 1.73
1013 1082 2.284625 ACGGCCCAGGAGTGATGA 60.285 61.111 0.00 0.00 0.00 2.92
1036 1105 2.574399 GGGAGACTGCGTGGACTC 59.426 66.667 0.00 0.00 0.00 3.36
1054 1123 2.741985 TGCGTGAGGTGCGAATGG 60.742 61.111 0.00 0.00 34.24 3.16
1055 1124 0.735978 TACTGCGTGAGGTGCGAATG 60.736 55.000 0.00 0.00 34.24 2.67
1346 1418 3.326588 CCACGGGATTGATGGGTATAGAA 59.673 47.826 0.00 0.00 0.00 2.10
1347 1419 2.903784 CCACGGGATTGATGGGTATAGA 59.096 50.000 0.00 0.00 0.00 1.98
1348 1420 2.637872 ACCACGGGATTGATGGGTATAG 59.362 50.000 0.00 0.00 37.86 1.31
1350 1422 1.518367 ACCACGGGATTGATGGGTAT 58.482 50.000 0.00 0.00 37.86 2.73
1352 1424 0.837272 CTACCACGGGATTGATGGGT 59.163 55.000 0.00 0.00 37.86 4.51
1354 1426 2.634940 AGATCTACCACGGGATTGATGG 59.365 50.000 0.00 0.00 39.57 3.51
1360 1432 2.040178 GGAACAGATCTACCACGGGAT 58.960 52.381 0.00 0.00 0.00 3.85
1377 1449 3.771160 GCGGGGCGAAGAGAGGAA 61.771 66.667 0.00 0.00 0.00 3.36
1379 1451 4.214327 GAGCGGGGCGAAGAGAGG 62.214 72.222 0.00 0.00 0.00 3.69
1402 1475 4.547367 GAACAGATCGGCCCCGGG 62.547 72.222 15.80 15.80 40.25 5.73
1409 1482 1.874019 CCACGCGAGAACAGATCGG 60.874 63.158 15.93 0.00 40.50 4.18
1418 1491 2.106938 GCATCCATCCACGCGAGA 59.893 61.111 15.93 9.99 0.00 4.04
1460 1533 0.596859 GACCGCCGATAACTAGTGGC 60.597 60.000 11.11 11.11 44.09 5.01
1475 1548 1.436336 CCTACCACCTAAGCGACCG 59.564 63.158 0.00 0.00 0.00 4.79
1525 1606 2.291741 GGAAGAGCACAAGAAACACAGG 59.708 50.000 0.00 0.00 0.00 4.00
1528 1609 3.206150 TCTGGAAGAGCACAAGAAACAC 58.794 45.455 0.00 0.00 38.67 3.32
1553 1634 3.734231 ACACGATAACAGAACACGAACTG 59.266 43.478 0.00 0.00 39.65 3.16
1578 1659 2.223852 GCGAAGTAGCCAAAACCCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
1579 1660 1.338655 GCGAAGTAGCCAAAACCCAAA 59.661 47.619 0.00 0.00 0.00 3.28
1580 1661 0.955905 GCGAAGTAGCCAAAACCCAA 59.044 50.000 0.00 0.00 0.00 4.12
1581 1662 0.109723 AGCGAAGTAGCCAAAACCCA 59.890 50.000 0.00 0.00 38.01 4.51
1582 1663 0.803117 GAGCGAAGTAGCCAAAACCC 59.197 55.000 0.00 0.00 38.01 4.11
1583 1664 0.442699 CGAGCGAAGTAGCCAAAACC 59.557 55.000 0.00 0.00 38.01 3.27
1584 1665 0.442699 CCGAGCGAAGTAGCCAAAAC 59.557 55.000 0.00 0.00 38.01 2.43
1646 1727 4.785512 AGCGAGCGAGCAGAACCG 62.786 66.667 9.01 0.00 40.15 4.44
1713 1798 0.107643 TTGTCCCACGCTGAACATGA 59.892 50.000 0.00 0.00 0.00 3.07
1728 1813 6.749118 GCAGTGACATTTATCTCCATTTTGTC 59.251 38.462 0.00 0.00 34.16 3.18
1729 1814 6.350445 GGCAGTGACATTTATCTCCATTTTGT 60.350 38.462 0.00 0.00 0.00 2.83
1730 1815 6.038356 GGCAGTGACATTTATCTCCATTTTG 58.962 40.000 0.00 0.00 0.00 2.44
1742 1827 0.806868 CATGCGAGGCAGTGACATTT 59.193 50.000 0.00 0.00 43.65 2.32
1743 1828 1.651240 GCATGCGAGGCAGTGACATT 61.651 55.000 0.00 0.00 43.65 2.71
1774 1861 4.685924 GGCATCTCCCATTTTACACATTG 58.314 43.478 0.00 0.00 0.00 2.82
1872 1961 9.537192 CCCACACATAATAGTTTAGACGAAATA 57.463 33.333 0.00 0.00 0.00 1.40
1934 2023 4.268405 GGAGCACTGACAAAACACAAATTG 59.732 41.667 0.00 0.00 0.00 2.32
1935 2024 4.432712 GGAGCACTGACAAAACACAAATT 58.567 39.130 0.00 0.00 0.00 1.82
1941 2030 0.257328 TGGGGAGCACTGACAAAACA 59.743 50.000 0.00 0.00 0.00 2.83
1942 2031 1.270550 CATGGGGAGCACTGACAAAAC 59.729 52.381 0.00 0.00 0.00 2.43
1947 2036 2.717639 AATACATGGGGAGCACTGAC 57.282 50.000 0.00 0.00 0.00 3.51
1974 2063 7.075851 AGCCAGATAAATGATCAGATCAGAA 57.924 36.000 18.13 6.87 43.53 3.02
1985 2074 4.322650 GCCCAAAACAAGCCAGATAAATGA 60.323 41.667 0.00 0.00 0.00 2.57
1992 2081 0.185901 AGAGCCCAAAACAAGCCAGA 59.814 50.000 0.00 0.00 0.00 3.86
1993 2082 1.541588 GTAGAGCCCAAAACAAGCCAG 59.458 52.381 0.00 0.00 0.00 4.85
1994 2083 1.144913 AGTAGAGCCCAAAACAAGCCA 59.855 47.619 0.00 0.00 0.00 4.75
1996 2085 4.675408 GCATAAGTAGAGCCCAAAACAAGC 60.675 45.833 0.00 0.00 0.00 4.01
2010 2099 3.023119 TGGCCAACCAATGCATAAGTAG 58.977 45.455 0.61 0.00 45.37 2.57
2024 2113 4.513442 TGTATGAGTATTGAGTGGCCAAC 58.487 43.478 7.24 5.48 0.00 3.77
2027 2116 4.757149 GGAATGTATGAGTATTGAGTGGCC 59.243 45.833 0.00 0.00 0.00 5.36
2031 2120 6.653020 TGCAAGGAATGTATGAGTATTGAGT 58.347 36.000 0.00 0.00 0.00 3.41
2032 2121 7.558161 TTGCAAGGAATGTATGAGTATTGAG 57.442 36.000 0.00 0.00 0.00 3.02
2033 2122 7.936496 TTTGCAAGGAATGTATGAGTATTGA 57.064 32.000 0.00 0.00 0.00 2.57
2034 2123 8.461222 TCTTTTGCAAGGAATGTATGAGTATTG 58.539 33.333 0.00 0.00 0.00 1.90
2035 2124 8.579850 TCTTTTGCAAGGAATGTATGAGTATT 57.420 30.769 0.00 0.00 0.00 1.89
2036 2125 8.579850 TTCTTTTGCAAGGAATGTATGAGTAT 57.420 30.769 11.26 0.00 0.00 2.12
2037 2126 7.665559 ACTTCTTTTGCAAGGAATGTATGAGTA 59.334 33.333 14.36 0.00 0.00 2.59
2049 2138 6.019640 CACATGTAACAACTTCTTTTGCAAGG 60.020 38.462 0.00 0.00 0.00 3.61
2062 2151 3.354089 AGCAAGCACACATGTAACAAC 57.646 42.857 0.00 0.00 0.00 3.32
2357 2447 4.019174 AGGCATGGATTTCACCAACTAAG 58.981 43.478 0.00 0.00 43.47 2.18
2391 2481 7.360361 CACAATTGAAGGGTCTGTAAAACTAC 58.640 38.462 13.59 0.00 0.00 2.73
2403 2493 1.075536 GGTCCTCCACAATTGAAGGGT 59.924 52.381 13.59 0.00 0.00 4.34
2467 2557 4.319405 CGTAATGCAGAAACACACATCACA 60.319 41.667 0.00 0.00 0.00 3.58
2481 2571 4.843147 TCAAGAACAAACACGTAATGCAG 58.157 39.130 0.00 0.00 0.00 4.41
2660 2764 9.226606 TGAATATCACACCGAGAATTTAAGTTT 57.773 29.630 0.00 0.00 0.00 2.66
3135 3253 6.757947 TGCCAATTTCTGAGCTTATAAATTGC 59.242 34.615 24.76 21.18 43.24 3.56
4714 5135 3.119316 CCAAAGCAACAGTGTTACCACAA 60.119 43.478 8.49 0.00 44.39 3.33
5302 5723 1.169661 TGTCGACAACCATGTTGGGC 61.170 55.000 17.62 2.78 43.37 5.36
5504 5925 3.134458 GAGAAGCATAAATGACCCTCCG 58.866 50.000 0.00 0.00 0.00 4.63
5548 5969 1.194781 CCAGGTACACAGGCTCCAGT 61.195 60.000 0.00 0.00 0.00 4.00
5912 6333 8.554490 AACTAGACCCATATGATAACAGAACT 57.446 34.615 3.65 0.00 0.00 3.01
5924 6345 5.126061 CAGCAAAAGCAAACTAGACCCATAT 59.874 40.000 0.00 0.00 0.00 1.78
5925 6346 4.458989 CAGCAAAAGCAAACTAGACCCATA 59.541 41.667 0.00 0.00 0.00 2.74
5926 6347 3.256631 CAGCAAAAGCAAACTAGACCCAT 59.743 43.478 0.00 0.00 0.00 4.00
5928 6349 2.608016 GCAGCAAAAGCAAACTAGACCC 60.608 50.000 0.00 0.00 0.00 4.46
5979 6402 1.128692 GCAATACAGCCACGACTCAAC 59.871 52.381 0.00 0.00 0.00 3.18
6222 6702 2.743664 CTGGACGAGTGCATCAATCAAA 59.256 45.455 0.00 0.00 0.00 2.69
6276 6756 9.193806 AGGATAAATTGAAAGATACAACTGCAT 57.806 29.630 0.00 0.00 0.00 3.96
6277 6757 8.579850 AGGATAAATTGAAAGATACAACTGCA 57.420 30.769 0.00 0.00 0.00 4.41
6310 6790 3.243643 CACAAACTGCAGCTTAAACAAGC 59.756 43.478 15.27 1.10 45.81 4.01
6383 6863 9.458727 AATTTCTCATCATCAGTTTGTGTCTAT 57.541 29.630 0.00 0.00 0.00 1.98
6475 6955 1.102809 TCAGCACCAACAGGCAACAG 61.103 55.000 0.00 0.00 41.41 3.16
6476 6956 1.077140 TCAGCACCAACAGGCAACA 60.077 52.632 0.00 0.00 41.41 3.33
6477 6957 1.360192 GTCAGCACCAACAGGCAAC 59.640 57.895 0.00 0.00 0.00 4.17
6478 6958 0.682532 TTGTCAGCACCAACAGGCAA 60.683 50.000 0.00 0.00 0.00 4.52
6479 6959 0.467844 ATTGTCAGCACCAACAGGCA 60.468 50.000 0.00 0.00 0.00 4.75
6480 6960 1.533625 TATTGTCAGCACCAACAGGC 58.466 50.000 0.00 0.00 0.00 4.85
6481 6961 3.376234 CAGATATTGTCAGCACCAACAGG 59.624 47.826 0.00 0.00 0.00 4.00
6502 6982 5.569355 TCCAAAGAATAGATGCCAAGTTCA 58.431 37.500 0.00 0.00 0.00 3.18
6514 6994 7.068593 TGCACCCTTCATTATTCCAAAGAATAG 59.931 37.037 0.00 0.00 43.98 1.73
6539 7019 1.884235 AGGGAACTTTTGCTCTCGTG 58.116 50.000 0.00 0.00 37.44 4.35
6552 7032 3.336138 AAAGTGGATCGAGAAGGGAAC 57.664 47.619 0.00 0.00 0.00 3.62
6573 7053 7.383687 CCTTTATACACTCTACCAAACACTCA 58.616 38.462 0.00 0.00 0.00 3.41
6575 7055 6.271624 ACCCTTTATACACTCTACCAAACACT 59.728 38.462 0.00 0.00 0.00 3.55
6587 7067 4.384208 GGACTCATGCACCCTTTATACACT 60.384 45.833 0.00 0.00 0.00 3.55
6588 7068 3.877508 GGACTCATGCACCCTTTATACAC 59.122 47.826 0.00 0.00 0.00 2.90
6594 7074 2.578021 AGTATGGACTCATGCACCCTTT 59.422 45.455 0.00 0.00 38.26 3.11
6612 7092 9.275398 CCTTAGTGTATTTGTGTTAAACCAGTA 57.725 33.333 0.00 0.00 0.00 2.74
6616 7096 7.293018 CGTCCTTAGTGTATTTGTGTTAAACC 58.707 38.462 0.00 0.00 0.00 3.27
6630 7110 0.105408 ACCAAACGCGTCCTTAGTGT 59.895 50.000 14.44 0.01 0.00 3.55
6631 7111 1.070175 CAACCAAACGCGTCCTTAGTG 60.070 52.381 14.44 3.09 0.00 2.74
6632 7112 1.223187 CAACCAAACGCGTCCTTAGT 58.777 50.000 14.44 0.00 0.00 2.24
6633 7113 0.110373 GCAACCAAACGCGTCCTTAG 60.110 55.000 14.44 0.00 0.00 2.18
6634 7114 1.508808 GGCAACCAAACGCGTCCTTA 61.509 55.000 14.44 0.00 0.00 2.69
6635 7115 2.719354 GCAACCAAACGCGTCCTT 59.281 55.556 14.44 0.00 0.00 3.36
6677 7157 2.014128 ACAACCTATTTTCATCCCGCG 58.986 47.619 0.00 0.00 0.00 6.46
6684 7164 5.242838 CAGGCTACCAAACAACCTATTTTCA 59.757 40.000 0.00 0.00 0.00 2.69
6691 7171 0.184933 TGCAGGCTACCAAACAACCT 59.815 50.000 0.00 0.00 0.00 3.50
6694 7174 2.295909 GTGAATGCAGGCTACCAAACAA 59.704 45.455 0.00 0.00 0.00 2.83
6695 7175 1.885887 GTGAATGCAGGCTACCAAACA 59.114 47.619 0.00 0.00 0.00 2.83
6696 7176 2.162681 AGTGAATGCAGGCTACCAAAC 58.837 47.619 0.00 0.00 0.00 2.93
6697 7177 2.557924 CAAGTGAATGCAGGCTACCAAA 59.442 45.455 0.00 0.00 0.00 3.28
6698 7178 2.161855 CAAGTGAATGCAGGCTACCAA 58.838 47.619 0.00 0.00 0.00 3.67
6699 7179 1.825090 CAAGTGAATGCAGGCTACCA 58.175 50.000 0.00 0.00 0.00 3.25
6700 7180 0.453390 GCAAGTGAATGCAGGCTACC 59.547 55.000 0.00 0.00 45.70 3.18
6708 7188 0.961019 TGTTCCCAGCAAGTGAATGC 59.039 50.000 0.00 0.00 46.78 3.56
6719 7199 2.183409 CCGATTTGGCTGTTCCCAG 58.817 57.895 0.00 0.00 41.91 4.45
6720 7200 4.413928 CCGATTTGGCTGTTCCCA 57.586 55.556 0.00 0.00 0.00 4.37
6747 7227 4.560856 GCGCTCGATCTGGCTCGT 62.561 66.667 0.00 0.00 39.62 4.18
6753 7233 1.140589 ACTCCTTGCGCTCGATCTG 59.859 57.895 9.73 0.00 0.00 2.90
6757 7237 4.069232 CCCACTCCTTGCGCTCGA 62.069 66.667 9.73 0.00 0.00 4.04
6764 7244 4.101448 CTCGGGGCCCACTCCTTG 62.101 72.222 26.86 3.89 0.00 3.61
6768 7248 3.851128 GTAGCTCGGGGCCCACTC 61.851 72.222 26.86 10.21 43.05 3.51
6769 7249 4.400251 AGTAGCTCGGGGCCCACT 62.400 66.667 26.86 18.64 43.05 4.00
6770 7250 4.162690 CAGTAGCTCGGGGCCCAC 62.163 72.222 26.86 12.36 43.05 4.61
6771 7251 2.599139 ATACAGTAGCTCGGGGCCCA 62.599 60.000 26.86 9.05 43.05 5.36
6772 7252 1.837499 ATACAGTAGCTCGGGGCCC 60.837 63.158 15.76 15.76 43.05 5.80
6773 7253 1.367840 CATACAGTAGCTCGGGGCC 59.632 63.158 0.00 0.00 43.05 5.80
6774 7254 1.301009 GCATACAGTAGCTCGGGGC 60.301 63.158 0.00 0.00 42.19 5.80
6775 7255 1.115930 AGGCATACAGTAGCTCGGGG 61.116 60.000 0.00 0.00 0.00 5.73
6776 7256 0.032678 CAGGCATACAGTAGCTCGGG 59.967 60.000 0.00 0.00 0.00 5.14
6777 7257 0.747255 ACAGGCATACAGTAGCTCGG 59.253 55.000 0.00 0.00 0.00 4.63
6778 7258 2.357952 TGTACAGGCATACAGTAGCTCG 59.642 50.000 0.00 0.00 31.38 5.03
6779 7259 4.038042 TCATGTACAGGCATACAGTAGCTC 59.962 45.833 1.79 0.00 38.43 4.09
6785 7265 6.815641 GGAAGATATCATGTACAGGCATACAG 59.184 42.308 1.79 1.72 38.43 2.74
6796 7276 6.497259 GTGAAGGTAGGGGAAGATATCATGTA 59.503 42.308 5.32 0.00 0.00 2.29
6799 7279 5.731924 AGTGAAGGTAGGGGAAGATATCAT 58.268 41.667 5.32 0.00 0.00 2.45
6810 7290 1.210538 GGGGGTTAGTGAAGGTAGGG 58.789 60.000 0.00 0.00 0.00 3.53
6818 7298 2.361070 GGATTAGGGAGGGGGTTAGTGA 60.361 54.545 0.00 0.00 0.00 3.41
6821 8375 1.743589 GGGATTAGGGAGGGGGTTAG 58.256 60.000 0.00 0.00 0.00 2.34
6827 8381 2.058705 GAAGAAGGGGATTAGGGAGGG 58.941 57.143 0.00 0.00 0.00 4.30
6832 8386 2.976185 GAGGAGGAAGAAGGGGATTAGG 59.024 54.545 0.00 0.00 0.00 2.69
6930 8484 3.186909 CTGCAAACCGATCGTCTGAATA 58.813 45.455 15.09 0.00 0.00 1.75
6992 8546 3.026630 TCCGAGCGCCTAAAATAGATG 57.973 47.619 2.29 0.00 0.00 2.90
6994 8548 2.691526 TCTTCCGAGCGCCTAAAATAGA 59.308 45.455 2.29 0.00 0.00 1.98
7104 8658 1.231641 CCCCCAACCAAACACCTGA 59.768 57.895 0.00 0.00 0.00 3.86
7110 8664 2.989253 CCGAGCCCCCAACCAAAC 60.989 66.667 0.00 0.00 0.00 2.93
7111 8665 3.179339 TCCGAGCCCCCAACCAAA 61.179 61.111 0.00 0.00 0.00 3.28
7150 8704 1.865340 CGATCTCCTCATGTACGTCGA 59.135 52.381 0.00 0.00 0.00 4.20
7153 8707 1.604755 GCTCGATCTCCTCATGTACGT 59.395 52.381 0.00 0.00 0.00 3.57
7159 8713 1.962807 CAGGAAGCTCGATCTCCTCAT 59.037 52.381 0.63 0.00 0.00 2.90
7160 8714 1.064389 TCAGGAAGCTCGATCTCCTCA 60.064 52.381 0.63 0.00 0.00 3.86
7176 8730 0.389166 GACAACGAGCACTCCTCAGG 60.389 60.000 0.00 0.00 40.78 3.86
7194 8748 2.833582 GGGCAGGAGACGGATCGA 60.834 66.667 0.00 0.00 0.00 3.59
7213 8767 1.667830 GAGTACGTGCTGCCTTGCA 60.668 57.895 12.07 0.00 41.05 4.08
7233 8787 4.100479 CTTGGCAAGCACCCATCA 57.900 55.556 15.25 0.00 31.26 3.07
7289 8844 2.276116 GGTGAGCTCACTCGGGTCA 61.276 63.158 38.17 4.56 46.69 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.