Multiple sequence alignment - TraesCS5B01G509000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G509000 chr5B 100.000 2267 0 0 1 2267 674266259 674268525 0.000000e+00 4187.0
1 TraesCS5B01G509000 chr5B 87.879 165 20 0 2072 2236 65189716 65189552 6.390000e-46 195.0
2 TraesCS5B01G509000 chr5D 81.191 1276 102 53 830 2085 534003971 534005128 0.000000e+00 900.0
3 TraesCS5B01G509000 chr5D 86.513 304 13 12 372 650 534003429 534003729 2.190000e-80 309.0
4 TraesCS5B01G509000 chr5D 91.480 223 16 3 2044 2266 534005128 534005347 1.020000e-78 303.0
5 TraesCS5B01G509000 chr5D 86.061 165 23 0 2072 2236 65903865 65904029 6.430000e-41 178.0
6 TraesCS5B01G509000 chr5D 95.918 49 2 0 772 820 534003879 534003927 1.870000e-11 80.5
7 TraesCS5B01G509000 chr4A 88.592 561 45 7 1710 2265 637924316 637923770 0.000000e+00 664.0
8 TraesCS5B01G509000 chr4A 84.924 524 25 23 772 1275 637930106 637929617 4.380000e-132 481.0
9 TraesCS5B01G509000 chr4A 87.448 239 13 5 375 596 637930890 637930652 2.230000e-65 259.0
10 TraesCS5B01G509000 chr4A 94.048 168 10 0 211 378 517406632 517406465 2.890000e-64 255.0
11 TraesCS5B01G509000 chr4D 95.679 162 7 0 211 372 12520301 12520140 6.210000e-66 261.0
12 TraesCS5B01G509000 chr4D 95.181 166 7 1 211 375 437295926 437295761 6.210000e-66 261.0
13 TraesCS5B01G509000 chr4D 93.103 174 12 0 201 374 3590645 3590472 2.890000e-64 255.0
14 TraesCS5B01G509000 chr3D 94.545 165 9 0 209 373 6667274 6667438 2.890000e-64 255.0
15 TraesCS5B01G509000 chr3D 89.231 195 16 5 192 383 87926182 87925990 2.910000e-59 239.0
16 TraesCS5B01G509000 chrUn 93.529 170 9 2 211 380 141680746 141680913 3.740000e-63 252.0
17 TraesCS5B01G509000 chr4B 91.713 181 13 2 211 391 100321241 100321419 1.340000e-62 250.0
18 TraesCS5B01G509000 chr2D 93.491 169 10 1 208 376 624881783 624881950 1.340000e-62 250.0
19 TraesCS5B01G509000 chr5A 87.879 165 20 0 2072 2236 55161762 55161926 6.390000e-46 195.0
20 TraesCS5B01G509000 chr2B 83.636 165 27 0 2072 2236 116849088 116849252 3.010000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G509000 chr5B 674266259 674268525 2266 False 4187.000 4187 100.0000 1 2267 1 chr5B.!!$F1 2266
1 TraesCS5B01G509000 chr5D 534003429 534005347 1918 False 398.125 900 88.7755 372 2266 4 chr5D.!!$F2 1894
2 TraesCS5B01G509000 chr4A 637923770 637924316 546 True 664.000 664 88.5920 1710 2265 1 chr4A.!!$R2 555
3 TraesCS5B01G509000 chr4A 637929617 637930890 1273 True 370.000 481 86.1860 375 1275 2 chr4A.!!$R3 900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.191064 TGTCTTGGTCCTGGACTCCT 59.809 55.0 25.01 0.0 32.47 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 2082 0.105504 AACTTTGCCCTCCCAGCTTT 60.106 50.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 7.423844 TCTACATATATGTGATGGGCTTAGG 57.576 40.000 25.48 4.36 41.89 2.69
104 105 4.848357 ACATATATGTGATGGGCTTAGGC 58.152 43.478 17.60 0.00 40.03 3.93
117 118 2.019984 GCTTAGGCCATCTTGTCTTGG 58.980 52.381 5.01 0.00 36.03 3.61
118 119 2.619074 GCTTAGGCCATCTTGTCTTGGT 60.619 50.000 5.01 0.00 35.34 3.67
119 120 3.274288 CTTAGGCCATCTTGTCTTGGTC 58.726 50.000 5.01 0.00 37.91 4.02
120 121 0.329596 AGGCCATCTTGTCTTGGTCC 59.670 55.000 5.01 0.00 38.42 4.46
121 122 0.329596 GGCCATCTTGTCTTGGTCCT 59.670 55.000 0.00 0.00 35.34 3.85
122 123 1.457346 GCCATCTTGTCTTGGTCCTG 58.543 55.000 0.00 0.00 35.34 3.86
123 124 1.952367 GCCATCTTGTCTTGGTCCTGG 60.952 57.143 0.00 0.00 35.34 4.45
124 125 1.630369 CCATCTTGTCTTGGTCCTGGA 59.370 52.381 0.00 0.00 0.00 3.86
125 126 2.616510 CCATCTTGTCTTGGTCCTGGAC 60.617 54.545 18.65 18.65 0.00 4.02
126 127 2.103153 TCTTGTCTTGGTCCTGGACT 57.897 50.000 25.01 0.00 32.47 3.85
127 128 1.971357 TCTTGTCTTGGTCCTGGACTC 59.029 52.381 25.01 15.85 32.47 3.36
128 129 1.002544 CTTGTCTTGGTCCTGGACTCC 59.997 57.143 25.01 11.37 32.47 3.85
129 130 0.191064 TGTCTTGGTCCTGGACTCCT 59.809 55.000 25.01 0.00 32.47 3.69
130 131 0.610687 GTCTTGGTCCTGGACTCCTG 59.389 60.000 25.01 13.35 32.47 3.86
131 132 0.545309 TCTTGGTCCTGGACTCCTGG 60.545 60.000 25.01 13.77 42.93 4.45
132 133 1.538876 TTGGTCCTGGACTCCTGGG 60.539 63.158 25.01 10.35 42.03 4.45
133 134 3.403558 GGTCCTGGACTCCTGGGC 61.404 72.222 25.01 17.17 44.87 5.36
134 135 2.607750 GTCCTGGACTCCTGGGCA 60.608 66.667 19.53 0.14 44.94 5.36
135 136 2.607750 TCCTGGACTCCTGGGCAC 60.608 66.667 18.53 0.00 42.03 5.01
136 137 4.087892 CCTGGACTCCTGGGCACG 62.088 72.222 12.37 0.00 38.71 5.34
137 138 3.314331 CTGGACTCCTGGGCACGT 61.314 66.667 0.00 0.00 0.00 4.49
138 139 3.302347 CTGGACTCCTGGGCACGTC 62.302 68.421 0.00 0.00 0.00 4.34
139 140 4.083862 GGACTCCTGGGCACGTCC 62.084 72.222 8.74 8.74 39.14 4.79
140 141 3.311110 GACTCCTGGGCACGTCCA 61.311 66.667 6.41 1.45 36.21 4.02
141 142 3.591254 GACTCCTGGGCACGTCCAC 62.591 68.421 6.41 0.00 36.21 4.02
142 143 3.314331 CTCCTGGGCACGTCCACT 61.314 66.667 6.41 0.00 36.21 4.00
143 144 2.847234 TCCTGGGCACGTCCACTT 60.847 61.111 6.41 0.00 36.21 3.16
144 145 2.669569 CCTGGGCACGTCCACTTG 60.670 66.667 6.41 0.00 36.21 3.16
145 146 2.669569 CTGGGCACGTCCACTTGG 60.670 66.667 6.41 0.00 36.21 3.61
146 147 4.947147 TGGGCACGTCCACTTGGC 62.947 66.667 1.49 1.49 39.44 4.52
147 148 4.643387 GGGCACGTCCACTTGGCT 62.643 66.667 9.23 0.00 39.94 4.75
148 149 2.345991 GGCACGTCCACTTGGCTA 59.654 61.111 2.84 0.00 37.63 3.93
149 150 2.033194 GGCACGTCCACTTGGCTAC 61.033 63.158 2.84 0.00 37.63 3.58
150 151 1.301401 GCACGTCCACTTGGCTACA 60.301 57.895 0.00 0.00 34.44 2.74
151 152 1.291877 GCACGTCCACTTGGCTACAG 61.292 60.000 0.00 0.00 34.44 2.74
152 153 0.670546 CACGTCCACTTGGCTACAGG 60.671 60.000 0.00 0.00 34.44 4.00
153 154 1.119574 ACGTCCACTTGGCTACAGGT 61.120 55.000 0.00 0.00 37.40 4.00
154 155 0.892755 CGTCCACTTGGCTACAGGTA 59.107 55.000 0.00 0.00 34.86 3.08
155 156 1.274167 CGTCCACTTGGCTACAGGTAA 59.726 52.381 0.00 0.00 34.86 2.85
156 157 2.093658 CGTCCACTTGGCTACAGGTAAT 60.094 50.000 0.00 0.00 34.86 1.89
157 158 3.532542 GTCCACTTGGCTACAGGTAATC 58.467 50.000 0.00 0.00 34.86 1.75
158 159 3.197983 GTCCACTTGGCTACAGGTAATCT 59.802 47.826 0.00 0.00 34.86 2.40
159 160 3.844211 TCCACTTGGCTACAGGTAATCTT 59.156 43.478 0.00 0.00 34.86 2.40
160 161 3.941483 CCACTTGGCTACAGGTAATCTTG 59.059 47.826 0.00 0.00 34.86 3.02
161 162 4.565652 CCACTTGGCTACAGGTAATCTTGT 60.566 45.833 0.00 0.00 34.86 3.16
162 163 4.393062 CACTTGGCTACAGGTAATCTTGTG 59.607 45.833 0.00 0.00 34.86 3.33
163 164 3.627395 TGGCTACAGGTAATCTTGTGG 57.373 47.619 0.00 0.00 35.54 4.17
164 165 3.178046 TGGCTACAGGTAATCTTGTGGA 58.822 45.455 0.00 0.00 34.95 4.02
165 166 3.780294 TGGCTACAGGTAATCTTGTGGAT 59.220 43.478 0.00 0.00 34.95 3.41
166 167 4.227300 TGGCTACAGGTAATCTTGTGGATT 59.773 41.667 0.00 0.00 45.53 3.01
167 168 5.193679 GGCTACAGGTAATCTTGTGGATTT 58.806 41.667 0.00 0.00 41.42 2.17
168 169 5.652452 GGCTACAGGTAATCTTGTGGATTTT 59.348 40.000 0.00 0.00 41.42 1.82
169 170 6.404734 GGCTACAGGTAATCTTGTGGATTTTG 60.405 42.308 0.00 0.00 41.42 2.44
170 171 6.151144 GCTACAGGTAATCTTGTGGATTTTGT 59.849 38.462 0.00 0.00 41.42 2.83
171 172 7.335924 GCTACAGGTAATCTTGTGGATTTTGTA 59.664 37.037 0.00 0.00 41.42 2.41
172 173 9.396022 CTACAGGTAATCTTGTGGATTTTGTAT 57.604 33.333 0.00 0.00 41.42 2.29
173 174 8.055279 ACAGGTAATCTTGTGGATTTTGTATG 57.945 34.615 0.00 0.00 41.42 2.39
174 175 7.888021 ACAGGTAATCTTGTGGATTTTGTATGA 59.112 33.333 0.00 0.00 41.42 2.15
175 176 8.184192 CAGGTAATCTTGTGGATTTTGTATGAC 58.816 37.037 0.00 0.00 41.42 3.06
176 177 7.888021 AGGTAATCTTGTGGATTTTGTATGACA 59.112 33.333 0.00 0.00 41.42 3.58
177 178 8.184192 GGTAATCTTGTGGATTTTGTATGACAG 58.816 37.037 0.00 0.00 41.42 3.51
178 179 8.946085 GTAATCTTGTGGATTTTGTATGACAGA 58.054 33.333 0.00 0.00 41.42 3.41
179 180 8.408043 AATCTTGTGGATTTTGTATGACAGAA 57.592 30.769 0.00 0.00 41.42 3.02
180 181 8.585471 ATCTTGTGGATTTTGTATGACAGAAT 57.415 30.769 0.00 0.00 35.88 2.40
181 182 8.408043 TCTTGTGGATTTTGTATGACAGAATT 57.592 30.769 0.00 0.00 33.70 2.17
182 183 8.298854 TCTTGTGGATTTTGTATGACAGAATTG 58.701 33.333 0.00 0.00 33.70 2.32
183 184 6.389091 TGTGGATTTTGTATGACAGAATTGC 58.611 36.000 0.00 0.00 33.70 3.56
184 185 5.807011 GTGGATTTTGTATGACAGAATTGCC 59.193 40.000 0.00 0.00 33.70 4.52
185 186 5.479724 TGGATTTTGTATGACAGAATTGCCA 59.520 36.000 0.00 0.00 33.70 4.92
186 187 6.038356 GGATTTTGTATGACAGAATTGCCAG 58.962 40.000 0.00 0.00 33.70 4.85
187 188 6.127647 GGATTTTGTATGACAGAATTGCCAGA 60.128 38.462 0.00 0.00 33.70 3.86
188 189 5.885230 TTTGTATGACAGAATTGCCAGAG 57.115 39.130 0.00 0.00 0.00 3.35
189 190 3.273434 TGTATGACAGAATTGCCAGAGC 58.727 45.455 0.00 0.00 40.48 4.09
198 199 2.679092 TGCCAGAGCATTGGGGAG 59.321 61.111 8.39 0.00 46.52 4.30
199 200 2.233566 TGCCAGAGCATTGGGGAGT 61.234 57.895 8.39 0.00 46.52 3.85
200 201 1.000396 GCCAGAGCATTGGGGAGTT 60.000 57.895 8.39 0.00 38.72 3.01
201 202 1.034292 GCCAGAGCATTGGGGAGTTC 61.034 60.000 8.39 0.00 38.72 3.01
202 203 0.329261 CCAGAGCATTGGGGAGTTCA 59.671 55.000 0.00 0.00 34.46 3.18
203 204 1.064166 CCAGAGCATTGGGGAGTTCAT 60.064 52.381 0.00 0.00 34.46 2.57
204 205 2.173356 CCAGAGCATTGGGGAGTTCATA 59.827 50.000 0.00 0.00 34.46 2.15
205 206 3.181436 CCAGAGCATTGGGGAGTTCATAT 60.181 47.826 0.00 0.00 34.46 1.78
206 207 4.467769 CAGAGCATTGGGGAGTTCATATT 58.532 43.478 0.00 0.00 0.00 1.28
207 208 4.891756 CAGAGCATTGGGGAGTTCATATTT 59.108 41.667 0.00 0.00 0.00 1.40
208 209 5.361857 CAGAGCATTGGGGAGTTCATATTTT 59.638 40.000 0.00 0.00 0.00 1.82
209 210 6.547141 CAGAGCATTGGGGAGTTCATATTTTA 59.453 38.462 0.00 0.00 0.00 1.52
210 211 7.232127 CAGAGCATTGGGGAGTTCATATTTTAT 59.768 37.037 0.00 0.00 0.00 1.40
211 212 8.448008 AGAGCATTGGGGAGTTCATATTTTATA 58.552 33.333 0.00 0.00 0.00 0.98
212 213 8.409358 AGCATTGGGGAGTTCATATTTTATAC 57.591 34.615 0.00 0.00 0.00 1.47
213 214 8.227507 AGCATTGGGGAGTTCATATTTTATACT 58.772 33.333 0.00 0.00 0.00 2.12
214 215 8.515414 GCATTGGGGAGTTCATATTTTATACTC 58.485 37.037 0.00 0.00 35.61 2.59
221 222 8.652290 GGAGTTCATATTTTATACTCCCTCTGT 58.348 37.037 8.10 0.00 45.84 3.41
224 225 9.274206 GTTCATATTTTATACTCCCTCTGTTCC 57.726 37.037 0.00 0.00 0.00 3.62
225 226 8.798975 TCATATTTTATACTCCCTCTGTTCCT 57.201 34.615 0.00 0.00 0.00 3.36
226 227 9.892444 TCATATTTTATACTCCCTCTGTTCCTA 57.108 33.333 0.00 0.00 0.00 2.94
230 231 9.853177 ATTTTATACTCCCTCTGTTCCTAAATG 57.147 33.333 0.00 0.00 0.00 2.32
231 232 7.989947 TTATACTCCCTCTGTTCCTAAATGT 57.010 36.000 0.00 0.00 0.00 2.71
232 233 9.496710 TTTATACTCCCTCTGTTCCTAAATGTA 57.503 33.333 0.00 0.00 0.00 2.29
233 234 7.989947 ATACTCCCTCTGTTCCTAAATGTAA 57.010 36.000 0.00 0.00 0.00 2.41
234 235 6.301169 ACTCCCTCTGTTCCTAAATGTAAG 57.699 41.667 0.00 0.00 0.00 2.34
235 236 5.785940 ACTCCCTCTGTTCCTAAATGTAAGT 59.214 40.000 0.00 0.00 0.00 2.24
236 237 6.070710 ACTCCCTCTGTTCCTAAATGTAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
237 238 6.023603 TCCCTCTGTTCCTAAATGTAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
238 239 6.500751 TCCCTCTGTTCCTAAATGTAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
239 240 7.017254 TCCCTCTGTTCCTAAATGTAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
240 241 7.665974 CCCTCTGTTCCTAAATGTAAGTCTTTT 59.334 37.037 0.00 0.00 0.00 2.27
241 242 9.067986 CCTCTGTTCCTAAATGTAAGTCTTTTT 57.932 33.333 0.00 0.00 0.00 1.94
255 256 9.924650 TGTAAGTCTTTTTAGAGATTCCACTAC 57.075 33.333 0.00 0.00 0.00 2.73
256 257 9.924650 GTAAGTCTTTTTAGAGATTCCACTACA 57.075 33.333 0.00 0.00 0.00 2.74
258 259 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
259 260 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
260 261 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
267 268 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
268 269 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
269 270 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
270 271 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
271 272 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
273 274 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
274 275 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
275 276 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
302 303 8.635877 AGACATATTTTCGAGTGTAGATTCAC 57.364 34.615 0.00 0.00 38.46 3.18
313 314 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
314 315 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
315 316 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
316 317 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
317 318 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
318 319 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
319 320 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
320 321 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
321 322 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
322 323 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
323 324 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
324 325 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
325 326 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
326 327 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
327 328 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
328 329 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
329 330 7.879677 TCATTTTGCTCCATATGTAGTCCATAG 59.120 37.037 1.24 0.00 39.36 2.23
330 331 6.747414 TTTGCTCCATATGTAGTCCATAGT 57.253 37.500 1.24 0.00 39.36 2.12
331 332 7.849322 TTTGCTCCATATGTAGTCCATAGTA 57.151 36.000 1.24 0.00 39.36 1.82
332 333 7.468141 TTGCTCCATATGTAGTCCATAGTAG 57.532 40.000 1.24 0.00 39.36 2.57
333 334 6.790319 TGCTCCATATGTAGTCCATAGTAGA 58.210 40.000 1.24 0.00 39.36 2.59
334 335 7.238710 TGCTCCATATGTAGTCCATAGTAGAA 58.761 38.462 1.24 0.00 39.36 2.10
335 336 7.895962 TGCTCCATATGTAGTCCATAGTAGAAT 59.104 37.037 1.24 0.00 39.36 2.40
336 337 8.410141 GCTCCATATGTAGTCCATAGTAGAATC 58.590 40.741 1.24 0.00 39.36 2.52
337 338 9.693739 CTCCATATGTAGTCCATAGTAGAATCT 57.306 37.037 1.24 0.00 39.36 2.40
338 339 9.688091 TCCATATGTAGTCCATAGTAGAATCTC 57.312 37.037 1.24 0.00 39.36 2.75
339 340 9.693739 CCATATGTAGTCCATAGTAGAATCTCT 57.306 37.037 1.24 0.00 39.36 3.10
367 368 8.507524 AAAGACTTAAATTTAGGAATCGAGGG 57.492 34.615 13.73 0.00 0.00 4.30
368 369 7.433537 AGACTTAAATTTAGGAATCGAGGGA 57.566 36.000 13.73 0.00 0.00 4.20
369 370 7.501844 AGACTTAAATTTAGGAATCGAGGGAG 58.498 38.462 13.73 0.00 0.00 4.30
370 371 7.125963 AGACTTAAATTTAGGAATCGAGGGAGT 59.874 37.037 13.73 2.90 0.00 3.85
371 372 8.315220 ACTTAAATTTAGGAATCGAGGGAGTA 57.685 34.615 13.73 0.00 0.00 2.59
372 373 8.935741 ACTTAAATTTAGGAATCGAGGGAGTAT 58.064 33.333 13.73 0.00 0.00 2.12
455 461 1.289276 GCCACTTGTTTTGCCTTGTG 58.711 50.000 0.00 0.00 0.00 3.33
522 531 3.909574 ACGACCGAAAAATAACATTTGCG 59.090 39.130 0.00 0.00 40.32 4.85
523 532 4.152526 CGACCGAAAAATAACATTTGCGA 58.847 39.130 1.88 0.00 42.69 5.10
569 595 2.785713 TTTTACCTCGTGCCAAAAGC 57.214 45.000 0.00 0.00 44.14 3.51
589 615 3.995048 AGCGCTGTGATAATCTCATGATG 59.005 43.478 10.39 0.00 35.97 3.07
621 681 5.688348 GACATTACTCGTTCATGTCAGTC 57.312 43.478 13.19 0.00 44.24 3.51
632 692 3.361786 TCATGTCAGTCGGTTATCCTCA 58.638 45.455 0.00 0.00 0.00 3.86
654 714 5.899120 ACAACTAGTGTGATCTATCGTGT 57.101 39.130 0.00 0.00 39.72 4.49
656 716 5.414765 ACAACTAGTGTGATCTATCGTGTCA 59.585 40.000 0.00 0.00 39.72 3.58
657 717 6.072119 ACAACTAGTGTGATCTATCGTGTCAA 60.072 38.462 0.00 0.00 39.72 3.18
679 739 3.653539 AAACGTCTTACATTTTGGGGC 57.346 42.857 0.00 0.00 0.00 5.80
680 740 1.541379 ACGTCTTACATTTTGGGGCC 58.459 50.000 0.00 0.00 0.00 5.80
681 741 0.450184 CGTCTTACATTTTGGGGCCG 59.550 55.000 0.00 0.00 0.00 6.13
682 742 1.828979 GTCTTACATTTTGGGGCCGA 58.171 50.000 0.00 0.00 0.00 5.54
683 743 1.743394 GTCTTACATTTTGGGGCCGAG 59.257 52.381 0.00 0.00 0.00 4.63
684 744 1.102978 CTTACATTTTGGGGCCGAGG 58.897 55.000 0.00 0.00 0.00 4.63
685 745 0.323908 TTACATTTTGGGGCCGAGGG 60.324 55.000 0.00 0.00 0.00 4.30
687 747 1.754234 CATTTTGGGGCCGAGGGAG 60.754 63.158 0.00 0.00 0.00 4.30
690 750 0.917333 TTTTGGGGCCGAGGGAGTAT 60.917 55.000 0.00 0.00 0.00 2.12
691 751 1.342672 TTTGGGGCCGAGGGAGTATC 61.343 60.000 0.00 0.00 0.00 2.24
692 752 3.303928 GGGGCCGAGGGAGTATCG 61.304 72.222 0.00 0.00 39.86 2.92
710 813 8.470002 GGAGTATCGGGTAAAAGAAAACTAGTA 58.530 37.037 0.00 0.00 34.37 1.82
711 814 9.513727 GAGTATCGGGTAAAAGAAAACTAGTAG 57.486 37.037 0.00 0.00 0.00 2.57
712 815 9.029368 AGTATCGGGTAAAAGAAAACTAGTAGT 57.971 33.333 0.00 0.00 0.00 2.73
713 816 9.080915 GTATCGGGTAAAAGAAAACTAGTAGTG 57.919 37.037 2.90 0.00 0.00 2.74
715 818 6.925165 TCGGGTAAAAGAAAACTAGTAGTGTG 59.075 38.462 2.90 0.00 0.00 3.82
718 825 9.933723 GGGTAAAAGAAAACTAGTAGTGTGATA 57.066 33.333 2.90 0.00 0.00 2.15
771 1146 1.792757 ATGGTCTCAGCTGGCCCAAA 61.793 55.000 15.13 0.00 0.00 3.28
774 1149 0.250901 GTCTCAGCTGGCCCAAAGAA 60.251 55.000 15.13 0.00 0.00 2.52
822 1219 2.600731 CCAAGCACTACTGACGAAGAG 58.399 52.381 0.00 0.00 0.00 2.85
823 1220 2.229062 CCAAGCACTACTGACGAAGAGA 59.771 50.000 0.00 0.00 0.00 3.10
965 1414 2.543587 GCACGTTGCATTTCGATCG 58.456 52.632 9.36 9.36 44.26 3.69
966 1415 1.455908 GCACGTTGCATTTCGATCGC 61.456 55.000 11.09 0.00 44.26 4.58
967 1416 1.058748 ACGTTGCATTTCGATCGCG 59.941 52.632 11.09 8.10 39.35 5.87
968 1417 1.648165 CGTTGCATTTCGATCGCGG 60.648 57.895 11.09 0.40 38.28 6.46
969 1418 1.934476 GTTGCATTTCGATCGCGGC 60.934 57.895 11.09 11.30 38.28 6.53
970 1419 2.394563 TTGCATTTCGATCGCGGCA 61.395 52.632 11.09 13.77 38.28 5.69
971 1420 2.351210 GCATTTCGATCGCGGCAC 60.351 61.111 11.09 0.00 38.28 5.01
972 1421 3.088914 CATTTCGATCGCGGCACA 58.911 55.556 11.09 0.00 38.28 4.57
973 1422 1.296867 CATTTCGATCGCGGCACAC 60.297 57.895 11.09 0.00 38.28 3.82
974 1423 2.461110 ATTTCGATCGCGGCACACC 61.461 57.895 11.09 0.00 38.28 4.16
988 1437 0.246635 CACACCGAGGTAACAGAGGG 59.753 60.000 0.00 0.00 41.41 4.30
990 1439 0.818296 CACCGAGGTAACAGAGGGAG 59.182 60.000 0.00 0.00 41.41 4.30
999 1448 0.787084 AACAGAGGGAGGGAGAGACA 59.213 55.000 0.00 0.00 0.00 3.41
1300 1749 4.492160 GATCGACTCGTGCCGCCA 62.492 66.667 0.00 0.00 0.00 5.69
1301 1750 4.796231 ATCGACTCGTGCCGCCAC 62.796 66.667 0.00 0.00 38.62 5.01
1309 1758 4.322385 GTGCCGCCACGAACCAAC 62.322 66.667 0.00 0.00 31.34 3.77
1315 1764 3.708734 CCACGAACCAACGCCGTC 61.709 66.667 0.00 0.00 33.96 4.79
1316 1765 2.962786 CACGAACCAACGCCGTCA 60.963 61.111 0.00 0.00 33.96 4.35
1339 1788 2.324477 GCGTATCACATGGCGTGC 59.676 61.111 6.62 0.00 45.92 5.34
1344 1793 1.024046 TATCACATGGCGTGCGCTTT 61.024 50.000 16.21 1.53 45.92 3.51
1357 1806 3.353836 GCTTTGACCGCTTCGCCA 61.354 61.111 0.00 0.00 0.00 5.69
1358 1807 2.690778 GCTTTGACCGCTTCGCCAT 61.691 57.895 0.00 0.00 0.00 4.40
1360 1809 1.003839 TTTGACCGCTTCGCCATCT 60.004 52.632 0.00 0.00 0.00 2.90
1361 1810 0.605319 TTTGACCGCTTCGCCATCTT 60.605 50.000 0.00 0.00 0.00 2.40
1362 1811 1.298157 TTGACCGCTTCGCCATCTTG 61.298 55.000 0.00 0.00 0.00 3.02
1363 1812 1.447838 GACCGCTTCGCCATCTTGA 60.448 57.895 0.00 0.00 0.00 3.02
1364 1813 1.424493 GACCGCTTCGCCATCTTGAG 61.424 60.000 0.00 0.00 0.00 3.02
1389 1838 8.902806 AGTGTTCATAATGTTTCTGTTTTCTCA 58.097 29.630 0.00 0.00 0.00 3.27
1391 1840 9.897744 TGTTCATAATGTTTCTGTTTTCTCATC 57.102 29.630 0.00 0.00 0.00 2.92
1398 1847 9.741647 AATGTTTCTGTTTTCTCATCTCTTTTC 57.258 29.630 0.00 0.00 0.00 2.29
1399 1848 8.511604 TGTTTCTGTTTTCTCATCTCTTTTCT 57.488 30.769 0.00 0.00 0.00 2.52
1400 1849 8.960591 TGTTTCTGTTTTCTCATCTCTTTTCTT 58.039 29.630 0.00 0.00 0.00 2.52
1401 1850 9.444534 GTTTCTGTTTTCTCATCTCTTTTCTTC 57.555 33.333 0.00 0.00 0.00 2.87
1402 1851 8.970859 TTCTGTTTTCTCATCTCTTTTCTTCT 57.029 30.769 0.00 0.00 0.00 2.85
1403 1852 8.970859 TCTGTTTTCTCATCTCTTTTCTTCTT 57.029 30.769 0.00 0.00 0.00 2.52
1404 1853 9.050601 TCTGTTTTCTCATCTCTTTTCTTCTTC 57.949 33.333 0.00 0.00 0.00 2.87
1405 1854 8.970859 TGTTTTCTCATCTCTTTTCTTCTTCT 57.029 30.769 0.00 0.00 0.00 2.85
1406 1855 9.401058 TGTTTTCTCATCTCTTTTCTTCTTCTT 57.599 29.630 0.00 0.00 0.00 2.52
1407 1856 9.877137 GTTTTCTCATCTCTTTTCTTCTTCTTC 57.123 33.333 0.00 0.00 0.00 2.87
1408 1857 9.844257 TTTTCTCATCTCTTTTCTTCTTCTTCT 57.156 29.630 0.00 0.00 0.00 2.85
1409 1858 9.844257 TTTCTCATCTCTTTTCTTCTTCTTCTT 57.156 29.630 0.00 0.00 0.00 2.52
1410 1859 9.844257 TTCTCATCTCTTTTCTTCTTCTTCTTT 57.156 29.630 0.00 0.00 0.00 2.52
1411 1860 9.844257 TCTCATCTCTTTTCTTCTTCTTCTTTT 57.156 29.630 0.00 0.00 0.00 2.27
1413 1862 9.844257 TCATCTCTTTTCTTCTTCTTCTTTTCT 57.156 29.630 0.00 0.00 0.00 2.52
1416 1865 9.114952 TCTCTTTTCTTCTTCTTCTTTTCTTCC 57.885 33.333 0.00 0.00 0.00 3.46
1419 1868 5.646692 TCTTCTTCTTCTTTTCTTCCCCA 57.353 39.130 0.00 0.00 0.00 4.96
1425 1874 4.324267 TCTTCTTTTCTTCCCCATCGTTC 58.676 43.478 0.00 0.00 0.00 3.95
1432 1881 4.417426 TCTTCCCCATCGTTCCTTATTC 57.583 45.455 0.00 0.00 0.00 1.75
1438 1887 5.955355 TCCCCATCGTTCCTTATTCATTTTT 59.045 36.000 0.00 0.00 0.00 1.94
1476 1925 2.745102 CAATCATGCAAGCAACACACA 58.255 42.857 0.00 0.00 0.00 3.72
1477 1926 2.717580 ATCATGCAAGCAACACACAG 57.282 45.000 0.00 0.00 0.00 3.66
1478 1927 1.677942 TCATGCAAGCAACACACAGA 58.322 45.000 0.00 0.00 0.00 3.41
1479 1928 2.022934 TCATGCAAGCAACACACAGAA 58.977 42.857 0.00 0.00 0.00 3.02
1480 1929 2.426381 TCATGCAAGCAACACACAGAAA 59.574 40.909 0.00 0.00 0.00 2.52
1481 1930 3.119209 TCATGCAAGCAACACACAGAAAA 60.119 39.130 0.00 0.00 0.00 2.29
1482 1931 2.878580 TGCAAGCAACACACAGAAAAG 58.121 42.857 0.00 0.00 0.00 2.27
1483 1932 2.491298 TGCAAGCAACACACAGAAAAGA 59.509 40.909 0.00 0.00 0.00 2.52
1487 1936 5.668621 GCAAGCAACACACAGAAAAGAAAAC 60.669 40.000 0.00 0.00 0.00 2.43
1489 1938 3.303229 GCAACACACAGAAAAGAAAACCG 59.697 43.478 0.00 0.00 0.00 4.44
1493 1942 4.102649 CACACAGAAAAGAAAACCGTTCC 58.897 43.478 0.00 0.00 0.00 3.62
1500 1949 6.419710 CAGAAAAGAAAACCGTTCCAATAACC 59.580 38.462 0.00 0.00 0.00 2.85
1523 1972 2.787259 TTTTTCCTCGACGACGACG 58.213 52.632 13.39 13.39 43.81 5.12
1524 1973 0.307453 TTTTTCCTCGACGACGACGA 59.693 50.000 20.18 20.18 43.81 4.20
1525 1974 0.384725 TTTTCCTCGACGACGACGAC 60.385 55.000 17.84 7.02 43.81 4.34
1537 1986 2.536329 CGACGACGACGACATCATACTT 60.536 50.000 15.32 0.00 42.66 2.24
1540 1989 4.232221 ACGACGACGACATCATACTTTTT 58.768 39.130 15.32 0.00 42.66 1.94
1565 2014 4.786507 TCTTTTGATTGATGAGTTGCGTG 58.213 39.130 0.00 0.00 0.00 5.34
1595 2044 1.940883 AACTCTGCGGCAATGCATGG 61.941 55.000 7.79 0.00 45.26 3.66
1605 2054 1.069091 GCAATGCATGGCCACAAAAAC 60.069 47.619 15.73 0.00 0.00 2.43
1606 2055 1.536331 CAATGCATGGCCACAAAAACC 59.464 47.619 8.16 0.00 0.00 3.27
1607 2056 1.058284 ATGCATGGCCACAAAAACCT 58.942 45.000 8.16 0.00 0.00 3.50
1608 2057 0.106335 TGCATGGCCACAAAAACCTG 59.894 50.000 8.16 0.00 0.00 4.00
1631 2080 1.287425 GTAGTCCATGCGCTTGGTAC 58.713 55.000 33.70 28.48 38.01 3.34
1632 2081 0.177141 TAGTCCATGCGCTTGGTACC 59.823 55.000 33.70 24.09 38.01 3.34
1633 2082 1.376683 GTCCATGCGCTTGGTACCA 60.377 57.895 33.70 11.60 38.01 3.25
1634 2083 0.958382 GTCCATGCGCTTGGTACCAA 60.958 55.000 33.70 25.58 38.01 3.67
1650 2099 1.538687 CCAAAGCTGGGAGGGCAAAG 61.539 60.000 0.00 0.00 39.30 2.77
1659 2108 2.714250 TGGGAGGGCAAAGTTTCTAGAA 59.286 45.455 0.00 0.00 0.00 2.10
1660 2109 3.333680 TGGGAGGGCAAAGTTTCTAGAAT 59.666 43.478 5.89 0.00 0.00 2.40
1661 2110 3.948473 GGGAGGGCAAAGTTTCTAGAATC 59.052 47.826 5.89 5.69 0.00 2.52
1662 2111 4.324641 GGGAGGGCAAAGTTTCTAGAATCT 60.325 45.833 5.89 8.14 0.00 2.40
1663 2112 5.104485 GGGAGGGCAAAGTTTCTAGAATCTA 60.104 44.000 14.92 0.00 0.00 1.98
1664 2113 6.052360 GGAGGGCAAAGTTTCTAGAATCTAG 58.948 44.000 14.92 10.93 0.00 2.43
1665 2114 6.127026 GGAGGGCAAAGTTTCTAGAATCTAGA 60.127 42.308 15.47 15.47 0.00 2.43
1669 2118 6.292596 GGCAAAGTTTCTAGAATCTAGATGCG 60.293 42.308 24.58 12.54 31.89 4.73
1678 2127 3.577848 AGAATCTAGATGCGCCTCATTCT 59.422 43.478 15.26 15.72 35.05 2.40
1684 2133 1.651240 ATGCGCCTCATTCTGCACAC 61.651 55.000 4.18 0.00 40.61 3.82
1685 2134 2.780643 CGCCTCATTCTGCACACG 59.219 61.111 0.00 0.00 0.00 4.49
1686 2135 2.482374 GCCTCATTCTGCACACGC 59.518 61.111 0.00 0.00 39.24 5.34
1688 2137 1.499056 CCTCATTCTGCACACGCAC 59.501 57.895 0.00 0.00 45.36 5.34
1693 2142 2.774044 TTCTGCACACGCACAGAAA 58.226 47.368 3.10 0.00 46.89 2.52
1700 2149 1.008538 CACGCACAGAAACAAGCCC 60.009 57.895 0.00 0.00 0.00 5.19
1707 2156 1.963515 ACAGAAACAAGCCCCAATGTC 59.036 47.619 0.00 0.00 0.00 3.06
1828 2278 4.880120 CACACTAGAGGCATTCACATCAAT 59.120 41.667 0.00 0.00 0.00 2.57
1831 2281 3.795623 AGAGGCATTCACATCAATTGC 57.204 42.857 0.00 0.00 0.00 3.56
1832 2282 2.429610 AGAGGCATTCACATCAATTGCC 59.570 45.455 0.00 4.10 40.90 4.52
1857 2307 4.002982 GTGATGTTCAGGATAGCAACACA 58.997 43.478 0.00 0.00 35.60 3.72
1893 2343 4.719916 AGTTGTCGCGAACCGAGAAGTT 62.720 50.000 12.06 0.00 46.79 2.66
1894 2344 4.546637 TCGCGAACCGAGAAGTTC 57.453 55.556 6.20 0.00 41.89 3.01
1912 2362 2.989166 GTTCGAGAAACGTTATTCCCGT 59.011 45.455 0.00 0.00 43.13 5.28
1949 2399 8.088981 TCAAATCTCACTGGAGTAAACTACTTC 58.911 37.037 0.00 0.00 42.05 3.01
1980 2433 2.633481 ACTTGGCCCCGTAAGATAGATC 59.367 50.000 7.51 0.00 43.02 2.75
1992 2445 3.219176 AGATAGATCACGGGGTTACGA 57.781 47.619 0.00 0.00 37.61 3.43
2027 2480 1.600957 CGTTGCCCATCATCAGCTAAG 59.399 52.381 0.00 0.00 0.00 2.18
2030 2483 1.236628 GCCCATCATCAGCTAAGCAG 58.763 55.000 0.00 0.00 0.00 4.24
2051 2504 6.547510 AGCAGTTCTCAACCATTAGAAGTTTT 59.452 34.615 0.00 0.00 33.99 2.43
2052 2505 6.638468 GCAGTTCTCAACCATTAGAAGTTTTG 59.362 38.462 0.00 0.00 33.99 2.44
2053 2506 7.468631 GCAGTTCTCAACCATTAGAAGTTTTGA 60.469 37.037 0.00 0.00 33.99 2.69
2054 2507 8.072567 CAGTTCTCAACCATTAGAAGTTTTGAG 58.927 37.037 5.28 5.28 40.78 3.02
2055 2508 7.993183 AGTTCTCAACCATTAGAAGTTTTGAGA 59.007 33.333 8.99 8.99 44.42 3.27
2056 2509 7.730364 TCTCAACCATTAGAAGTTTTGAGAC 57.270 36.000 8.99 0.00 42.39 3.36
2057 2510 6.423905 TCTCAACCATTAGAAGTTTTGAGACG 59.576 38.462 8.99 0.00 42.39 4.18
2058 2511 5.049680 TCAACCATTAGAAGTTTTGAGACGC 60.050 40.000 0.00 0.00 0.00 5.19
2062 2553 5.049405 CCATTAGAAGTTTTGAGACGCTTGT 60.049 40.000 0.00 0.00 0.00 3.16
2066 2557 4.508124 AGAAGTTTTGAGACGCTTGTGTAG 59.492 41.667 0.00 0.00 0.00 2.74
2076 2567 1.734047 CGCTTGTGTAGGCTCTCAGAC 60.734 57.143 0.00 0.00 0.00 3.51
2164 2655 2.738521 TCCGCTGCGTCTTTGCTC 60.739 61.111 21.59 0.00 35.36 4.26
2212 2703 1.014044 TGAACGTTCGCAGCATCTCC 61.014 55.000 22.48 0.00 0.00 3.71
2238 2729 3.751175 TCTTCGATTTTGCCAACCTACAG 59.249 43.478 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.147732 CCTAAGCCCATCACATATATGTAGATA 57.852 37.037 17.86 5.15 39.39 1.98
78 79 7.419518 GCCTAAGCCCATCACATATATGTAGAT 60.420 40.741 17.86 17.80 39.39 1.98
79 80 6.127054 GCCTAAGCCCATCACATATATGTAGA 60.127 42.308 17.86 16.53 39.39 2.59
80 81 6.051717 GCCTAAGCCCATCACATATATGTAG 58.948 44.000 17.86 12.26 39.39 2.74
81 82 5.989477 GCCTAAGCCCATCACATATATGTA 58.011 41.667 17.86 7.59 39.39 2.29
82 83 4.848357 GCCTAAGCCCATCACATATATGT 58.152 43.478 12.75 12.75 42.84 2.29
97 98 2.019984 CCAAGACAAGATGGCCTAAGC 58.980 52.381 3.32 0.00 38.76 3.09
98 99 3.274288 GACCAAGACAAGATGGCCTAAG 58.726 50.000 3.32 0.00 40.51 2.18
99 100 2.026262 GGACCAAGACAAGATGGCCTAA 60.026 50.000 3.32 0.00 40.51 2.69
100 101 1.559682 GGACCAAGACAAGATGGCCTA 59.440 52.381 3.32 0.00 40.51 3.93
101 102 0.329596 GGACCAAGACAAGATGGCCT 59.670 55.000 3.32 0.00 40.51 5.19
102 103 0.329596 AGGACCAAGACAAGATGGCC 59.670 55.000 0.00 0.00 40.51 5.36
103 104 1.457346 CAGGACCAAGACAAGATGGC 58.543 55.000 0.00 0.00 40.51 4.40
104 105 1.630369 TCCAGGACCAAGACAAGATGG 59.370 52.381 0.00 0.00 42.60 3.51
105 106 2.304180 AGTCCAGGACCAAGACAAGATG 59.696 50.000 16.72 0.00 32.18 2.90
106 107 2.569404 GAGTCCAGGACCAAGACAAGAT 59.431 50.000 16.72 0.00 32.18 2.40
107 108 1.971357 GAGTCCAGGACCAAGACAAGA 59.029 52.381 16.72 0.00 32.18 3.02
108 109 1.002544 GGAGTCCAGGACCAAGACAAG 59.997 57.143 16.72 0.00 32.18 3.16
109 110 1.056660 GGAGTCCAGGACCAAGACAA 58.943 55.000 16.72 0.00 32.18 3.18
110 111 0.191064 AGGAGTCCAGGACCAAGACA 59.809 55.000 16.72 0.00 32.18 3.41
111 112 0.610687 CAGGAGTCCAGGACCAAGAC 59.389 60.000 16.72 5.92 32.18 3.01
112 113 0.545309 CCAGGAGTCCAGGACCAAGA 60.545 60.000 15.54 0.00 31.24 3.02
113 114 1.557269 CCCAGGAGTCCAGGACCAAG 61.557 65.000 21.88 0.78 31.24 3.61
114 115 1.538876 CCCAGGAGTCCAGGACCAA 60.539 63.158 21.88 0.00 31.24 3.67
115 116 2.122729 CCCAGGAGTCCAGGACCA 59.877 66.667 21.88 0.00 31.24 4.02
116 117 3.403558 GCCCAGGAGTCCAGGACC 61.404 72.222 21.88 8.62 31.24 4.46
117 118 2.607750 TGCCCAGGAGTCCAGGAC 60.608 66.667 21.88 12.25 31.24 3.85
118 119 2.607750 GTGCCCAGGAGTCCAGGA 60.608 66.667 21.88 3.01 31.24 3.86
119 120 4.087892 CGTGCCCAGGAGTCCAGG 62.088 72.222 13.73 13.73 0.00 4.45
120 121 3.302347 GACGTGCCCAGGAGTCCAG 62.302 68.421 12.86 2.60 0.00 3.86
121 122 3.311110 GACGTGCCCAGGAGTCCA 61.311 66.667 12.86 0.00 0.00 4.02
122 123 4.083862 GGACGTGCCCAGGAGTCC 62.084 72.222 0.00 0.00 45.07 3.85
123 124 3.311110 TGGACGTGCCCAGGAGTC 61.311 66.667 4.04 0.00 34.97 3.36
124 125 3.626924 GTGGACGTGCCCAGGAGT 61.627 66.667 4.04 0.00 36.78 3.85
125 126 2.883828 AAGTGGACGTGCCCAGGAG 61.884 63.158 4.04 0.00 36.78 3.69
126 127 2.847234 AAGTGGACGTGCCCAGGA 60.847 61.111 4.04 0.00 36.78 3.86
127 128 2.669569 CAAGTGGACGTGCCCAGG 60.670 66.667 4.04 0.00 36.78 4.45
128 129 2.669569 CCAAGTGGACGTGCCCAG 60.670 66.667 4.04 0.00 36.78 4.45
129 130 4.947147 GCCAAGTGGACGTGCCCA 62.947 66.667 4.04 0.00 37.39 5.36
130 131 3.248446 TAGCCAAGTGGACGTGCCC 62.248 63.158 4.04 0.00 37.39 5.36
131 132 2.033194 GTAGCCAAGTGGACGTGCC 61.033 63.158 4.04 0.43 37.39 5.01
132 133 1.291877 CTGTAGCCAAGTGGACGTGC 61.292 60.000 0.00 0.00 37.39 5.34
133 134 0.670546 CCTGTAGCCAAGTGGACGTG 60.671 60.000 0.18 0.00 37.39 4.49
134 135 1.119574 ACCTGTAGCCAAGTGGACGT 61.120 55.000 0.18 0.00 37.39 4.34
135 136 0.892755 TACCTGTAGCCAAGTGGACG 59.107 55.000 0.18 0.00 37.39 4.79
136 137 3.197983 AGATTACCTGTAGCCAAGTGGAC 59.802 47.826 0.18 0.00 37.39 4.02
137 138 3.450904 AGATTACCTGTAGCCAAGTGGA 58.549 45.455 0.18 0.00 37.39 4.02
138 139 3.914426 AGATTACCTGTAGCCAAGTGG 57.086 47.619 0.00 0.00 38.53 4.00
139 140 4.393062 CACAAGATTACCTGTAGCCAAGTG 59.607 45.833 0.00 0.00 0.00 3.16
140 141 4.565652 CCACAAGATTACCTGTAGCCAAGT 60.566 45.833 0.00 0.00 0.00 3.16
141 142 3.941483 CCACAAGATTACCTGTAGCCAAG 59.059 47.826 0.00 0.00 0.00 3.61
142 143 3.585289 TCCACAAGATTACCTGTAGCCAA 59.415 43.478 0.00 0.00 0.00 4.52
143 144 3.178046 TCCACAAGATTACCTGTAGCCA 58.822 45.455 0.00 0.00 0.00 4.75
144 145 3.906720 TCCACAAGATTACCTGTAGCC 57.093 47.619 0.00 0.00 0.00 3.93
145 146 6.151144 ACAAAATCCACAAGATTACCTGTAGC 59.849 38.462 0.00 0.00 44.75 3.58
146 147 7.687941 ACAAAATCCACAAGATTACCTGTAG 57.312 36.000 0.00 0.00 44.75 2.74
147 148 9.173021 CATACAAAATCCACAAGATTACCTGTA 57.827 33.333 0.00 0.00 44.75 2.74
148 149 7.888021 TCATACAAAATCCACAAGATTACCTGT 59.112 33.333 0.00 0.00 44.75 4.00
149 150 8.184192 GTCATACAAAATCCACAAGATTACCTG 58.816 37.037 0.00 0.00 44.75 4.00
150 151 7.888021 TGTCATACAAAATCCACAAGATTACCT 59.112 33.333 0.00 0.00 44.75 3.08
151 152 8.050778 TGTCATACAAAATCCACAAGATTACC 57.949 34.615 0.00 0.00 44.75 2.85
152 153 8.946085 TCTGTCATACAAAATCCACAAGATTAC 58.054 33.333 0.00 0.00 44.75 1.89
153 154 9.513906 TTCTGTCATACAAAATCCACAAGATTA 57.486 29.630 0.00 0.00 44.75 1.75
155 156 8.585471 ATTCTGTCATACAAAATCCACAAGAT 57.415 30.769 0.00 0.00 36.48 2.40
156 157 8.298854 CAATTCTGTCATACAAAATCCACAAGA 58.701 33.333 0.00 0.00 0.00 3.02
157 158 7.062605 GCAATTCTGTCATACAAAATCCACAAG 59.937 37.037 0.00 0.00 0.00 3.16
158 159 6.867816 GCAATTCTGTCATACAAAATCCACAA 59.132 34.615 0.00 0.00 0.00 3.33
159 160 6.389091 GCAATTCTGTCATACAAAATCCACA 58.611 36.000 0.00 0.00 0.00 4.17
160 161 5.807011 GGCAATTCTGTCATACAAAATCCAC 59.193 40.000 0.00 0.00 0.00 4.02
161 162 5.479724 TGGCAATTCTGTCATACAAAATCCA 59.520 36.000 0.00 0.00 30.26 3.41
162 163 5.964758 TGGCAATTCTGTCATACAAAATCC 58.035 37.500 0.00 0.00 30.26 3.01
163 164 6.855836 TCTGGCAATTCTGTCATACAAAATC 58.144 36.000 0.00 0.00 36.34 2.17
164 165 6.626623 GCTCTGGCAATTCTGTCATACAAAAT 60.627 38.462 0.00 0.00 36.34 1.82
165 166 5.335897 GCTCTGGCAATTCTGTCATACAAAA 60.336 40.000 0.00 0.00 36.34 2.44
166 167 4.156556 GCTCTGGCAATTCTGTCATACAAA 59.843 41.667 0.00 0.00 36.34 2.83
167 168 3.691118 GCTCTGGCAATTCTGTCATACAA 59.309 43.478 0.00 0.00 36.34 2.41
168 169 3.273434 GCTCTGGCAATTCTGTCATACA 58.727 45.455 0.00 0.00 36.34 2.29
169 170 3.273434 TGCTCTGGCAATTCTGTCATAC 58.727 45.455 0.00 0.00 46.36 2.39
170 171 3.632643 TGCTCTGGCAATTCTGTCATA 57.367 42.857 0.00 0.00 46.36 2.15
171 172 2.502142 TGCTCTGGCAATTCTGTCAT 57.498 45.000 0.00 0.00 46.36 3.06
182 183 1.000396 AACTCCCCAATGCTCTGGC 60.000 57.895 0.00 0.00 34.88 4.85
183 184 0.329261 TGAACTCCCCAATGCTCTGG 59.671 55.000 0.00 0.00 36.10 3.86
184 185 2.431954 ATGAACTCCCCAATGCTCTG 57.568 50.000 0.00 0.00 0.00 3.35
185 186 4.803329 AATATGAACTCCCCAATGCTCT 57.197 40.909 0.00 0.00 0.00 4.09
186 187 5.859205 AAAATATGAACTCCCCAATGCTC 57.141 39.130 0.00 0.00 0.00 4.26
187 188 8.227507 AGTATAAAATATGAACTCCCCAATGCT 58.772 33.333 0.00 0.00 0.00 3.79
188 189 8.409358 AGTATAAAATATGAACTCCCCAATGC 57.591 34.615 0.00 0.00 0.00 3.56
189 190 9.014297 GGAGTATAAAATATGAACTCCCCAATG 57.986 37.037 8.34 0.00 46.95 2.82
198 199 9.274206 GGAACAGAGGGAGTATAAAATATGAAC 57.726 37.037 0.00 0.00 0.00 3.18
199 200 9.225682 AGGAACAGAGGGAGTATAAAATATGAA 57.774 33.333 0.00 0.00 0.00 2.57
200 201 8.798975 AGGAACAGAGGGAGTATAAAATATGA 57.201 34.615 0.00 0.00 0.00 2.15
204 205 9.853177 CATTTAGGAACAGAGGGAGTATAAAAT 57.147 33.333 0.00 0.00 0.00 1.82
205 206 8.832735 ACATTTAGGAACAGAGGGAGTATAAAA 58.167 33.333 0.00 0.00 0.00 1.52
206 207 8.388656 ACATTTAGGAACAGAGGGAGTATAAA 57.611 34.615 0.00 0.00 0.00 1.40
207 208 7.989947 ACATTTAGGAACAGAGGGAGTATAA 57.010 36.000 0.00 0.00 0.00 0.98
208 209 9.144298 CTTACATTTAGGAACAGAGGGAGTATA 57.856 37.037 0.00 0.00 0.00 1.47
209 210 7.624077 ACTTACATTTAGGAACAGAGGGAGTAT 59.376 37.037 0.00 0.00 0.00 2.12
210 211 6.958192 ACTTACATTTAGGAACAGAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
211 212 5.785940 ACTTACATTTAGGAACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
212 213 6.155393 AGACTTACATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
213 214 6.023603 AGACTTACATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
214 215 6.301169 AGACTTACATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
215 216 8.622948 AAAAGACTTACATTTAGGAACAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
229 230 9.924650 GTAGTGGAATCTCTAAAAAGACTTACA 57.075 33.333 0.00 0.00 0.00 2.41
230 231 9.924650 TGTAGTGGAATCTCTAAAAAGACTTAC 57.075 33.333 0.00 0.00 0.00 2.34
232 233 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
233 234 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
234 235 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
241 242 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
242 243 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
243 244 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
244 245 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
245 246 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
246 247 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
247 248 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
248 249 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
249 250 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
276 277 9.731819 GTGAATCTACACTCGAAAATATGTCTA 57.268 33.333 0.00 0.00 37.73 2.59
277 278 8.470805 AGTGAATCTACACTCGAAAATATGTCT 58.529 33.333 0.00 0.00 46.36 3.41
278 279 8.635877 AGTGAATCTACACTCGAAAATATGTC 57.364 34.615 0.00 0.00 46.36 3.06
291 292 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
292 293 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
293 294 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
294 295 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
295 296 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
296 297 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
297 298 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
298 299 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
299 300 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
300 301 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
301 302 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
302 303 6.057533 TGGACTACATATGGAGCAAAATGAG 58.942 40.000 15.30 0.00 0.00 2.90
303 304 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
304 305 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
305 306 7.749666 ACTATGGACTACATATGGAGCAAAAT 58.250 34.615 15.30 6.56 41.07 1.82
306 307 7.136822 ACTATGGACTACATATGGAGCAAAA 57.863 36.000 15.30 0.00 41.07 2.44
307 308 6.747414 ACTATGGACTACATATGGAGCAAA 57.253 37.500 15.30 0.66 41.07 3.68
308 309 7.238710 TCTACTATGGACTACATATGGAGCAA 58.761 38.462 15.30 1.98 41.07 3.91
309 310 6.790319 TCTACTATGGACTACATATGGAGCA 58.210 40.000 15.30 6.30 41.07 4.26
310 311 7.704578 TTCTACTATGGACTACATATGGAGC 57.295 40.000 15.30 7.75 41.07 4.70
311 312 9.693739 AGATTCTACTATGGACTACATATGGAG 57.306 37.037 13.77 13.77 41.07 3.86
312 313 9.688091 GAGATTCTACTATGGACTACATATGGA 57.312 37.037 7.80 0.00 41.07 3.41
313 314 9.693739 AGAGATTCTACTATGGACTACATATGG 57.306 37.037 7.80 0.00 41.07 2.74
341 342 8.957466 CCCTCGATTCCTAAATTTAAGTCTTTT 58.043 33.333 0.00 0.00 0.00 2.27
342 343 8.326529 TCCCTCGATTCCTAAATTTAAGTCTTT 58.673 33.333 0.00 0.00 0.00 2.52
343 344 7.858498 TCCCTCGATTCCTAAATTTAAGTCTT 58.142 34.615 0.00 0.00 0.00 3.01
344 345 7.125963 ACTCCCTCGATTCCTAAATTTAAGTCT 59.874 37.037 0.00 0.00 0.00 3.24
345 346 7.273712 ACTCCCTCGATTCCTAAATTTAAGTC 58.726 38.462 0.00 0.00 0.00 3.01
346 347 7.196637 ACTCCCTCGATTCCTAAATTTAAGT 57.803 36.000 0.00 0.00 0.00 2.24
353 354 9.763837 TCATTATATACTCCCTCGATTCCTAAA 57.236 33.333 0.00 0.00 0.00 1.85
354 355 9.763837 TTCATTATATACTCCCTCGATTCCTAA 57.236 33.333 0.00 0.00 0.00 2.69
355 356 9.763837 TTTCATTATATACTCCCTCGATTCCTA 57.236 33.333 0.00 0.00 0.00 2.94
356 357 8.666129 TTTCATTATATACTCCCTCGATTCCT 57.334 34.615 0.00 0.00 0.00 3.36
357 358 9.720769 TTTTTCATTATATACTCCCTCGATTCC 57.279 33.333 0.00 0.00 0.00 3.01
366 367 9.827411 GCGGATTTCTTTTTCATTATATACTCC 57.173 33.333 0.00 0.00 0.00 3.85
369 370 9.612620 CCTGCGGATTTCTTTTTCATTATATAC 57.387 33.333 0.00 0.00 0.00 1.47
370 371 8.296713 GCCTGCGGATTTCTTTTTCATTATATA 58.703 33.333 0.00 0.00 0.00 0.86
371 372 7.014615 AGCCTGCGGATTTCTTTTTCATTATAT 59.985 33.333 0.00 0.00 0.00 0.86
372 373 6.321181 AGCCTGCGGATTTCTTTTTCATTATA 59.679 34.615 0.00 0.00 0.00 0.98
373 374 5.127682 AGCCTGCGGATTTCTTTTTCATTAT 59.872 36.000 0.00 0.00 0.00 1.28
559 585 0.521291 TATCACAGCGCTTTTGGCAC 59.479 50.000 7.50 0.00 41.91 5.01
569 595 6.589139 ACATACATCATGAGATTATCACAGCG 59.411 38.462 0.09 0.00 41.91 5.18
599 658 4.263209 CGACTGACATGAACGAGTAATGTC 59.737 45.833 17.82 17.82 46.73 3.06
600 659 4.166523 CGACTGACATGAACGAGTAATGT 58.833 43.478 0.00 4.72 37.24 2.71
632 692 5.414765 TGACACGATAGATCACACTAGTTGT 59.585 40.000 0.00 0.00 38.55 3.32
657 717 4.373527 GCCCCAAAATGTAAGACGTTTTT 58.626 39.130 6.77 0.00 42.72 1.94
662 722 0.450184 CGGCCCCAAAATGTAAGACG 59.550 55.000 0.00 0.00 0.00 4.18
665 725 1.102978 CCTCGGCCCCAAAATGTAAG 58.897 55.000 0.00 0.00 0.00 2.34
666 726 0.323908 CCCTCGGCCCCAAAATGTAA 60.324 55.000 0.00 0.00 0.00 2.41
669 729 1.754234 CTCCCTCGGCCCCAAAATG 60.754 63.158 0.00 0.00 0.00 2.32
672 732 1.307517 ATACTCCCTCGGCCCCAAA 60.308 57.895 0.00 0.00 0.00 3.28
674 734 2.122989 GATACTCCCTCGGCCCCA 60.123 66.667 0.00 0.00 0.00 4.96
675 735 3.303928 CGATACTCCCTCGGCCCC 61.304 72.222 0.00 0.00 32.58 5.80
680 740 2.954318 TCTTTTACCCGATACTCCCTCG 59.046 50.000 0.00 0.00 35.92 4.63
681 741 5.349061 TTTCTTTTACCCGATACTCCCTC 57.651 43.478 0.00 0.00 0.00 4.30
682 742 5.250082 AGTTTTCTTTTACCCGATACTCCCT 59.750 40.000 0.00 0.00 0.00 4.20
683 743 5.494724 AGTTTTCTTTTACCCGATACTCCC 58.505 41.667 0.00 0.00 0.00 4.30
684 744 7.326454 ACTAGTTTTCTTTTACCCGATACTCC 58.674 38.462 0.00 0.00 0.00 3.85
685 745 9.513727 CTACTAGTTTTCTTTTACCCGATACTC 57.486 37.037 0.00 0.00 0.00 2.59
687 747 9.080915 CACTACTAGTTTTCTTTTACCCGATAC 57.919 37.037 0.00 0.00 0.00 2.24
690 750 6.925165 CACACTACTAGTTTTCTTTTACCCGA 59.075 38.462 0.00 0.00 0.00 5.14
691 751 6.925165 TCACACTACTAGTTTTCTTTTACCCG 59.075 38.462 0.00 0.00 0.00 5.28
692 752 8.843885 ATCACACTACTAGTTTTCTTTTACCC 57.156 34.615 0.00 0.00 0.00 3.69
718 825 8.827177 TCGCGAAAAATTACAAGGATAGATAT 57.173 30.769 6.20 0.00 0.00 1.63
771 1146 2.066262 CCGGACGCGCATTATTATTCT 58.934 47.619 5.73 0.00 0.00 2.40
774 1149 1.296056 GGCCGGACGCGCATTATTAT 61.296 55.000 5.05 0.00 38.94 1.28
822 1219 1.082886 GACGGACGGACGATCGATC 60.083 63.158 24.34 15.68 37.61 3.69
823 1220 2.541120 GGACGGACGGACGATCGAT 61.541 63.158 24.34 5.96 37.61 3.59
826 1223 3.446175 GACGGACGGACGGACGATC 62.446 68.421 15.02 7.04 38.39 3.69
827 1224 3.503363 GACGGACGGACGGACGAT 61.503 66.667 15.02 2.50 38.39 3.73
901 1350 4.200283 CCGCGAGAGACCTGGCTC 62.200 72.222 8.23 9.30 41.27 4.70
967 1416 0.389948 CTCTGTTACCTCGGTGTGCC 60.390 60.000 0.00 0.00 0.00 5.01
968 1417 0.389948 CCTCTGTTACCTCGGTGTGC 60.390 60.000 0.00 0.00 0.00 4.57
969 1418 0.246635 CCCTCTGTTACCTCGGTGTG 59.753 60.000 0.00 0.00 0.00 3.82
970 1419 0.113776 TCCCTCTGTTACCTCGGTGT 59.886 55.000 0.00 0.00 0.00 4.16
971 1420 0.818296 CTCCCTCTGTTACCTCGGTG 59.182 60.000 0.00 0.00 0.00 4.94
972 1421 0.324460 CCTCCCTCTGTTACCTCGGT 60.324 60.000 0.00 0.00 0.00 4.69
973 1422 1.043673 CCCTCCCTCTGTTACCTCGG 61.044 65.000 0.00 0.00 0.00 4.63
974 1423 0.033405 TCCCTCCCTCTGTTACCTCG 60.033 60.000 0.00 0.00 0.00 4.63
979 1428 2.000803 TGTCTCTCCCTCCCTCTGTTA 58.999 52.381 0.00 0.00 0.00 2.41
988 1437 2.166907 TCCCTCATTGTCTCTCCCTC 57.833 55.000 0.00 0.00 0.00 4.30
990 1439 2.368221 CAGATCCCTCATTGTCTCTCCC 59.632 54.545 0.00 0.00 0.00 4.30
999 1448 2.885388 ACTCCTCCAGATCCCTCATT 57.115 50.000 0.00 0.00 0.00 2.57
1292 1741 4.322385 GTTGGTTCGTGGCGGCAC 62.322 66.667 30.53 30.53 0.00 5.01
1298 1747 3.708734 GACGGCGTTGGTTCGTGG 61.709 66.667 16.19 0.00 37.25 4.94
1299 1748 2.962786 TGACGGCGTTGGTTCGTG 60.963 61.111 16.19 0.00 37.25 4.35
1300 1749 2.963320 GTGACGGCGTTGGTTCGT 60.963 61.111 16.19 0.00 39.99 3.85
1301 1750 4.054455 CGTGACGGCGTTGGTTCG 62.054 66.667 16.19 11.05 0.00 3.95
1302 1751 2.963320 ACGTGACGGCGTTGGTTC 60.963 61.111 16.19 0.32 43.04 3.62
1329 1778 2.977456 TCAAAGCGCACGCCATGT 60.977 55.556 11.47 0.00 43.17 3.21
1349 1798 4.724126 ATGAACACTCAAGATGGCGAAGC 61.724 47.826 0.00 0.00 45.12 3.86
1351 1800 2.542020 TGAACACTCAAGATGGCGAA 57.458 45.000 0.00 0.00 0.00 4.70
1357 1806 8.627208 ACAGAAACATTATGAACACTCAAGAT 57.373 30.769 0.00 0.00 34.49 2.40
1358 1807 8.450578 AACAGAAACATTATGAACACTCAAGA 57.549 30.769 0.00 0.00 34.49 3.02
1360 1809 9.515020 GAAAACAGAAACATTATGAACACTCAA 57.485 29.630 0.00 0.00 34.49 3.02
1361 1810 8.902806 AGAAAACAGAAACATTATGAACACTCA 58.097 29.630 0.00 0.00 35.56 3.41
1362 1811 9.387123 GAGAAAACAGAAACATTATGAACACTC 57.613 33.333 0.00 0.00 0.00 3.51
1363 1812 8.902806 TGAGAAAACAGAAACATTATGAACACT 58.097 29.630 0.00 0.00 0.00 3.55
1364 1813 9.683069 ATGAGAAAACAGAAACATTATGAACAC 57.317 29.630 0.00 0.00 0.00 3.32
1391 1840 8.349245 GGGAAGAAAAGAAGAAGAAGAAAAGAG 58.651 37.037 0.00 0.00 0.00 2.85
1392 1841 7.285629 GGGGAAGAAAAGAAGAAGAAGAAAAGA 59.714 37.037 0.00 0.00 0.00 2.52
1393 1842 7.068716 TGGGGAAGAAAAGAAGAAGAAGAAAAG 59.931 37.037 0.00 0.00 0.00 2.27
1395 1844 6.431722 TGGGGAAGAAAAGAAGAAGAAGAAA 58.568 36.000 0.00 0.00 0.00 2.52
1396 1845 6.013554 TGGGGAAGAAAAGAAGAAGAAGAA 57.986 37.500 0.00 0.00 0.00 2.52
1397 1846 5.646692 TGGGGAAGAAAAGAAGAAGAAGA 57.353 39.130 0.00 0.00 0.00 2.87
1398 1847 5.123027 CGATGGGGAAGAAAAGAAGAAGAAG 59.877 44.000 0.00 0.00 0.00 2.85
1399 1848 5.003804 CGATGGGGAAGAAAAGAAGAAGAA 58.996 41.667 0.00 0.00 0.00 2.52
1400 1849 4.041691 ACGATGGGGAAGAAAAGAAGAAGA 59.958 41.667 0.00 0.00 0.00 2.87
1401 1850 4.327680 ACGATGGGGAAGAAAAGAAGAAG 58.672 43.478 0.00 0.00 0.00 2.85
1402 1851 4.367039 ACGATGGGGAAGAAAAGAAGAA 57.633 40.909 0.00 0.00 0.00 2.52
1403 1852 4.324267 GAACGATGGGGAAGAAAAGAAGA 58.676 43.478 0.00 0.00 0.00 2.87
1404 1853 3.440522 GGAACGATGGGGAAGAAAAGAAG 59.559 47.826 0.00 0.00 0.00 2.85
1405 1854 3.073946 AGGAACGATGGGGAAGAAAAGAA 59.926 43.478 0.00 0.00 0.00 2.52
1406 1855 2.642807 AGGAACGATGGGGAAGAAAAGA 59.357 45.455 0.00 0.00 0.00 2.52
1407 1856 3.073274 AGGAACGATGGGGAAGAAAAG 57.927 47.619 0.00 0.00 0.00 2.27
1408 1857 3.518992 AAGGAACGATGGGGAAGAAAA 57.481 42.857 0.00 0.00 0.00 2.29
1409 1858 4.855298 ATAAGGAACGATGGGGAAGAAA 57.145 40.909 0.00 0.00 0.00 2.52
1410 1859 4.226394 TGAATAAGGAACGATGGGGAAGAA 59.774 41.667 0.00 0.00 0.00 2.52
1411 1860 3.778075 TGAATAAGGAACGATGGGGAAGA 59.222 43.478 0.00 0.00 0.00 2.87
1412 1861 4.150897 TGAATAAGGAACGATGGGGAAG 57.849 45.455 0.00 0.00 0.00 3.46
1413 1862 4.788925 ATGAATAAGGAACGATGGGGAA 57.211 40.909 0.00 0.00 0.00 3.97
1438 1887 6.223351 TGATTGCATTGCATCCATAAGAAA 57.777 33.333 12.95 0.00 38.76 2.52
1456 1905 2.729360 CTGTGTGTTGCTTGCATGATTG 59.271 45.455 3.33 0.00 0.00 2.67
1459 1908 1.677942 TCTGTGTGTTGCTTGCATGA 58.322 45.000 3.33 0.00 0.00 3.07
1460 1909 2.495409 TTCTGTGTGTTGCTTGCATG 57.505 45.000 0.00 0.00 0.00 4.06
1462 1911 2.491298 TCTTTTCTGTGTGTTGCTTGCA 59.509 40.909 0.00 0.00 0.00 4.08
1464 1913 5.163963 GGTTTTCTTTTCTGTGTGTTGCTTG 60.164 40.000 0.00 0.00 0.00 4.01
1466 1915 4.494484 GGTTTTCTTTTCTGTGTGTTGCT 58.506 39.130 0.00 0.00 0.00 3.91
1467 1916 3.303229 CGGTTTTCTTTTCTGTGTGTTGC 59.697 43.478 0.00 0.00 0.00 4.17
1468 1917 4.481463 ACGGTTTTCTTTTCTGTGTGTTG 58.519 39.130 0.00 0.00 0.00 3.33
1469 1918 4.776795 ACGGTTTTCTTTTCTGTGTGTT 57.223 36.364 0.00 0.00 0.00 3.32
1470 1919 4.380128 GGAACGGTTTTCTTTTCTGTGTGT 60.380 41.667 0.00 0.00 0.00 3.72
1471 1920 4.102649 GGAACGGTTTTCTTTTCTGTGTG 58.897 43.478 0.00 0.00 0.00 3.82
1472 1921 3.759618 TGGAACGGTTTTCTTTTCTGTGT 59.240 39.130 0.00 0.00 0.00 3.72
1473 1922 4.364415 TGGAACGGTTTTCTTTTCTGTG 57.636 40.909 0.00 0.00 0.00 3.66
1474 1923 5.592104 ATTGGAACGGTTTTCTTTTCTGT 57.408 34.783 0.00 0.00 0.00 3.41
1475 1924 6.419710 GGTTATTGGAACGGTTTTCTTTTCTG 59.580 38.462 0.00 0.00 0.00 3.02
1476 1925 6.461927 GGGTTATTGGAACGGTTTTCTTTTCT 60.462 38.462 0.00 0.00 0.00 2.52
1477 1926 5.693104 GGGTTATTGGAACGGTTTTCTTTTC 59.307 40.000 0.00 0.00 0.00 2.29
1478 1927 5.603596 GGGTTATTGGAACGGTTTTCTTTT 58.396 37.500 0.00 0.00 0.00 2.27
1479 1928 4.261698 CGGGTTATTGGAACGGTTTTCTTT 60.262 41.667 0.00 0.00 0.00 2.52
1480 1929 3.253921 CGGGTTATTGGAACGGTTTTCTT 59.746 43.478 0.00 0.00 0.00 2.52
1481 1930 2.815503 CGGGTTATTGGAACGGTTTTCT 59.184 45.455 0.00 0.00 0.00 2.52
1482 1931 2.095110 CCGGGTTATTGGAACGGTTTTC 60.095 50.000 0.00 0.00 39.70 2.29
1483 1932 1.887854 CCGGGTTATTGGAACGGTTTT 59.112 47.619 0.00 0.00 39.70 2.43
1537 1986 8.914654 CGCAACTCATCAATCAAAAGATAAAAA 58.085 29.630 0.00 0.00 0.00 1.94
1540 1989 7.022979 CACGCAACTCATCAATCAAAAGATAA 58.977 34.615 0.00 0.00 0.00 1.75
1542 1991 5.396484 CACGCAACTCATCAATCAAAAGAT 58.604 37.500 0.00 0.00 0.00 2.40
1544 1993 3.916172 CCACGCAACTCATCAATCAAAAG 59.084 43.478 0.00 0.00 0.00 2.27
1546 1995 2.351641 GCCACGCAACTCATCAATCAAA 60.352 45.455 0.00 0.00 0.00 2.69
1549 1998 0.804364 TGCCACGCAACTCATCAATC 59.196 50.000 0.00 0.00 34.76 2.67
1550 1999 1.246649 TTGCCACGCAACTCATCAAT 58.753 45.000 0.00 0.00 43.99 2.57
1551 2000 2.712984 TTGCCACGCAACTCATCAA 58.287 47.368 0.00 0.00 43.99 2.57
1552 2001 4.471761 TTGCCACGCAACTCATCA 57.528 50.000 0.00 0.00 43.99 3.07
1575 2024 0.800683 CATGCATTGCCGCAGAGTTG 60.801 55.000 6.12 0.00 46.99 3.16
1595 2044 2.949644 ACTACAGACAGGTTTTTGTGGC 59.050 45.455 0.00 0.00 0.00 5.01
1600 2049 3.821033 GCATGGACTACAGACAGGTTTTT 59.179 43.478 0.00 0.00 0.00 1.94
1605 2054 0.807667 GCGCATGGACTACAGACAGG 60.808 60.000 0.30 0.00 0.00 4.00
1606 2055 0.174389 AGCGCATGGACTACAGACAG 59.826 55.000 11.47 0.00 0.00 3.51
1607 2056 0.608130 AAGCGCATGGACTACAGACA 59.392 50.000 11.47 0.00 0.00 3.41
1608 2057 1.002366 CAAGCGCATGGACTACAGAC 58.998 55.000 11.47 0.00 0.00 3.51
1631 2080 1.533753 TTTGCCCTCCCAGCTTTGG 60.534 57.895 0.00 0.00 0.00 3.28
1632 2081 0.829182 ACTTTGCCCTCCCAGCTTTG 60.829 55.000 0.00 0.00 0.00 2.77
1633 2082 0.105504 AACTTTGCCCTCCCAGCTTT 60.106 50.000 0.00 0.00 0.00 3.51
1634 2083 0.105504 AAACTTTGCCCTCCCAGCTT 60.106 50.000 0.00 0.00 0.00 3.74
1650 2099 4.877282 AGGCGCATCTAGATTCTAGAAAC 58.123 43.478 23.62 17.63 0.00 2.78
1659 2108 2.612471 GCAGAATGAGGCGCATCTAGAT 60.612 50.000 23.78 5.52 39.69 1.98
1660 2109 1.269988 GCAGAATGAGGCGCATCTAGA 60.270 52.381 23.78 2.91 39.69 2.43
1661 2110 1.146637 GCAGAATGAGGCGCATCTAG 58.853 55.000 23.78 9.20 39.69 2.43
1662 2111 0.465287 TGCAGAATGAGGCGCATCTA 59.535 50.000 23.78 10.05 39.69 1.98
1663 2112 1.094073 GTGCAGAATGAGGCGCATCT 61.094 55.000 23.78 4.45 39.69 2.90
1664 2113 1.354506 GTGCAGAATGAGGCGCATC 59.645 57.895 16.46 16.46 39.69 3.91
1665 2114 1.377594 TGTGCAGAATGAGGCGCAT 60.378 52.632 10.83 0.00 44.73 4.73
1669 2118 2.482374 GCGTGTGCAGAATGAGGC 59.518 61.111 0.00 0.00 39.69 4.70
1684 2133 1.733402 TTGGGGCTTGTTTCTGTGCG 61.733 55.000 0.00 0.00 0.00 5.34
1685 2134 0.681175 ATTGGGGCTTGTTTCTGTGC 59.319 50.000 0.00 0.00 0.00 4.57
1686 2135 1.688197 ACATTGGGGCTTGTTTCTGTG 59.312 47.619 0.00 0.00 0.00 3.66
1687 2136 1.963515 GACATTGGGGCTTGTTTCTGT 59.036 47.619 0.00 0.00 0.00 3.41
1688 2137 2.229784 GAGACATTGGGGCTTGTTTCTG 59.770 50.000 0.00 0.00 0.00 3.02
1693 2142 2.610438 AATGAGACATTGGGGCTTGT 57.390 45.000 0.00 0.00 0.00 3.16
1700 2149 4.340381 GGGGAGAATGAAATGAGACATTGG 59.660 45.833 0.00 0.00 36.94 3.16
1739 2189 3.564644 GCCTGTTCATCCATCTGAATGAG 59.435 47.826 0.00 0.00 37.47 2.90
1828 2278 2.655090 TCCTGAACATCACTTGGCAA 57.345 45.000 0.00 0.00 0.00 4.52
1831 2281 3.877559 TGCTATCCTGAACATCACTTGG 58.122 45.455 0.00 0.00 0.00 3.61
1832 2282 4.696877 TGTTGCTATCCTGAACATCACTTG 59.303 41.667 0.00 0.00 0.00 3.16
1886 2336 5.061933 GGGAATAACGTTTCTCGAACTTCTC 59.938 44.000 5.91 0.00 42.86 2.87
1949 2399 0.680061 GGGGCCAAGTATCGGAGTAG 59.320 60.000 4.39 0.00 0.00 2.57
2008 2461 1.336125 GCTTAGCTGATGATGGGCAAC 59.664 52.381 0.00 0.00 0.00 4.17
2027 2480 5.948992 AACTTCTAATGGTTGAGAACTGC 57.051 39.130 0.00 0.00 0.00 4.40
2030 2483 8.154649 TCTCAAAACTTCTAATGGTTGAGAAC 57.845 34.615 10.59 0.00 44.74 3.01
2051 2504 0.243907 GAGCCTACACAAGCGTCTCA 59.756 55.000 0.00 0.00 0.00 3.27
2052 2505 0.528470 AGAGCCTACACAAGCGTCTC 59.472 55.000 0.00 0.00 0.00 3.36
2053 2506 0.528470 GAGAGCCTACACAAGCGTCT 59.472 55.000 0.00 0.00 0.00 4.18
2054 2507 0.243907 TGAGAGCCTACACAAGCGTC 59.756 55.000 0.00 0.00 0.00 5.19
2055 2508 0.244994 CTGAGAGCCTACACAAGCGT 59.755 55.000 0.00 0.00 0.00 5.07
2056 2509 0.528017 TCTGAGAGCCTACACAAGCG 59.472 55.000 0.00 0.00 0.00 4.68
2057 2510 1.734047 CGTCTGAGAGCCTACACAAGC 60.734 57.143 0.00 0.00 0.00 4.01
2058 2511 1.542030 ACGTCTGAGAGCCTACACAAG 59.458 52.381 0.00 0.00 0.00 3.16
2062 2553 2.027469 TCAGTACGTCTGAGAGCCTACA 60.027 50.000 11.95 0.00 46.77 2.74
2076 2567 2.183555 GCGAGGGGGTTCAGTACG 59.816 66.667 0.00 0.00 0.00 3.67
2152 2643 2.135139 CTTGTAGTGAGCAAAGACGCA 58.865 47.619 0.00 0.00 0.00 5.24
2164 2655 1.134788 GTCGGGATGGTCCTTGTAGTG 60.135 57.143 0.00 0.00 36.57 2.74
2212 2703 1.913403 GTTGGCAAAATCGAAGATGCG 59.087 47.619 0.00 0.00 45.12 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.