Multiple sequence alignment - TraesCS5B01G508900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G508900 chr5B 100.000 5333 0 0 625 5957 674261962 674267294 0.000000e+00 9849.0
1 TraesCS5B01G508900 chr5B 100.000 372 0 0 1 372 674261338 674261709 0.000000e+00 688.0
2 TraesCS5B01G508900 chr5D 93.452 3940 182 27 1157 5045 533999382 534003296 0.000000e+00 5777.0
3 TraesCS5B01G508900 chr5D 86.513 304 13 12 5293 5571 534003429 534003729 5.800000e-80 309.0
4 TraesCS5B01G508900 chr5D 85.520 221 8 7 5751 5957 534003971 534004181 6.050000e-50 209.0
5 TraesCS5B01G508900 chr5D 95.918 49 2 0 5693 5741 534003879 534003927 4.950000e-11 80.5
6 TraesCS5B01G508900 chr4A 92.874 2063 75 30 2973 4973 637933154 637931102 0.000000e+00 2929.0
7 TraesCS5B01G508900 chr4A 90.833 1800 110 24 1199 2977 637934945 637933180 0.000000e+00 2359.0
8 TraesCS5B01G508900 chr4A 86.981 699 45 22 4159 4818 727041755 727042446 0.000000e+00 745.0
9 TraesCS5B01G508900 chr4A 86.409 699 49 25 4159 4818 10027520 10026829 0.000000e+00 723.0
10 TraesCS5B01G508900 chr4A 85.857 700 51 20 4159 4818 703790121 703790812 0.000000e+00 701.0
11 TraesCS5B01G508900 chr4A 83.791 401 23 20 625 1013 637935713 637935343 5.720000e-90 342.0
12 TraesCS5B01G508900 chr4A 80.628 382 58 6 1 372 637936688 637936313 1.260000e-71 281.0
13 TraesCS5B01G508900 chr4A 87.448 239 13 5 5296 5517 637930890 637930652 5.920000e-65 259.0
14 TraesCS5B01G508900 chr4A 94.048 168 10 0 5132 5299 517406632 517406465 7.660000e-64 255.0
15 TraesCS5B01G508900 chr4A 79.649 285 22 21 5693 5957 637930106 637929838 7.940000e-39 172.0
16 TraesCS5B01G508900 chr7B 86.409 699 49 23 4159 4818 660138109 660138800 0.000000e+00 723.0
17 TraesCS5B01G508900 chr1B 86.143 700 49 20 4159 4818 562248690 562249381 0.000000e+00 712.0
18 TraesCS5B01G508900 chr1A 85.429 700 49 24 4159 4818 417203649 417202963 0.000000e+00 678.0
19 TraesCS5B01G508900 chr6A 90.814 479 27 10 4350 4818 571221450 571220979 5.070000e-175 625.0
20 TraesCS5B01G508900 chr6A 90.556 180 15 2 4159 4336 571221670 571221491 2.780000e-58 237.0
21 TraesCS5B01G508900 chr4D 95.679 162 7 0 5132 5293 12520301 12520140 1.650000e-65 261.0
22 TraesCS5B01G508900 chr4D 95.181 166 7 1 5132 5296 437295926 437295761 1.650000e-65 261.0
23 TraesCS5B01G508900 chr4D 93.103 174 12 0 5122 5295 3590645 3590472 7.660000e-64 255.0
24 TraesCS5B01G508900 chr3D 94.545 165 9 0 5130 5294 6667274 6667438 7.660000e-64 255.0
25 TraesCS5B01G508900 chr3D 89.231 195 16 5 5113 5304 87926182 87925990 7.720000e-59 239.0
26 TraesCS5B01G508900 chrUn 93.529 170 9 2 5132 5301 141680746 141680913 9.910000e-63 252.0
27 TraesCS5B01G508900 chr4B 91.713 181 13 2 5132 5312 100321241 100321419 3.560000e-62 250.0
28 TraesCS5B01G508900 chr2D 93.491 169 10 1 5129 5297 624881783 624881950 3.560000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G508900 chr5B 674261338 674267294 5956 False 5268.500 9849 100.00000 1 5957 2 chr5B.!!$F1 5956
1 TraesCS5B01G508900 chr5D 533999382 534004181 4799 False 1593.875 5777 90.35075 1157 5957 4 chr5D.!!$F1 4800
2 TraesCS5B01G508900 chr4A 637929838 637936688 6850 True 1057.000 2929 85.87050 1 5957 6 chr4A.!!$R3 5956
3 TraesCS5B01G508900 chr4A 727041755 727042446 691 False 745.000 745 86.98100 4159 4818 1 chr4A.!!$F2 659
4 TraesCS5B01G508900 chr4A 10026829 10027520 691 True 723.000 723 86.40900 4159 4818 1 chr4A.!!$R1 659
5 TraesCS5B01G508900 chr4A 703790121 703790812 691 False 701.000 701 85.85700 4159 4818 1 chr4A.!!$F1 659
6 TraesCS5B01G508900 chr7B 660138109 660138800 691 False 723.000 723 86.40900 4159 4818 1 chr7B.!!$F1 659
7 TraesCS5B01G508900 chr1B 562248690 562249381 691 False 712.000 712 86.14300 4159 4818 1 chr1B.!!$F1 659
8 TraesCS5B01G508900 chr1A 417202963 417203649 686 True 678.000 678 85.42900 4159 4818 1 chr1A.!!$R1 659
9 TraesCS5B01G508900 chr6A 571220979 571221670 691 True 431.000 625 90.68500 4159 4818 2 chr6A.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 222 0.322546 ACTTCCCGTCAAATCCCTGC 60.323 55.000 0.0 0.0 0.00 4.85 F
695 1054 0.459585 CATACCAAGGTCGTCCCACG 60.460 60.000 0.0 0.0 44.19 4.94 F
1054 1421 0.032615 CCAATTCCCCCAATCCCGAA 60.033 55.000 0.0 0.0 0.00 4.30 F
1057 1424 0.482887 ATTCCCCCAATCCCGAATCC 59.517 55.000 0.0 0.0 0.00 3.01 F
1091 1458 0.551396 CCCCAAACCCTATCCCTGAC 59.449 60.000 0.0 0.0 0.00 3.51 F
1092 1459 0.551396 CCCAAACCCTATCCCTGACC 59.449 60.000 0.0 0.0 0.00 4.02 F
1095 1462 0.919710 AAACCCTATCCCTGACCTGC 59.080 55.000 0.0 0.0 0.00 4.85 F
1096 1463 0.988678 AACCCTATCCCTGACCTGCC 60.989 60.000 0.0 0.0 0.00 4.85 F
1581 2169 1.133792 CATATGTGGGGTGAAGGGTCC 60.134 57.143 0.0 0.0 0.00 4.46 F
2263 2872 1.227556 ACCTGTTCTGTCCGCACAC 60.228 57.895 0.0 0.0 0.00 3.82 F
3016 3667 1.238439 TCCTGCTTAGCTTGTGCAAC 58.762 50.000 5.6 0.0 42.74 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1035 1402 0.032615 TTCGGGATTGGGGGAATTGG 60.033 55.000 0.00 0.00 0.00 3.16 R
1702 2294 0.882042 AATGACGCATCGGCCATCTC 60.882 55.000 2.24 0.00 31.60 2.75 R
2247 2856 1.069703 CATTGTGTGCGGACAGAACAG 60.070 52.381 21.47 13.33 39.57 3.16 R
2357 2976 1.206072 GCTTGTCTGCAGCAGAACG 59.794 57.895 27.04 17.63 42.46 3.95 R
3038 3689 3.000684 AGCTCGACATCTGTACAGGTA 57.999 47.619 22.48 4.80 0.00 3.08 R
3053 3704 5.612709 GCACTAAGTTACAAAGTCAAGCTCG 60.613 44.000 0.00 0.00 0.00 5.03 R
3093 3744 2.033448 TTGCACGCCAACCCTAGG 59.967 61.111 0.06 0.06 0.00 3.02 R
3180 3832 9.720769 AATACTTTCTTTCGAACCTATTCTCAA 57.279 29.630 0.00 0.00 32.12 3.02 R
3601 4253 0.813184 AACTGGATGGCAGCAAATCG 59.187 50.000 4.64 0.00 0.00 3.34 R
4293 4996 3.321497 GTCTAGCGGAGGCAAGATAATG 58.679 50.000 0.00 0.00 43.41 1.90 R
5104 5910 0.329261 TGAACTCCCCAATGCTCTGG 59.671 55.000 0.00 0.00 36.10 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.654079 CGGCAGGCAGAGAAGAGGT 61.654 63.158 0.00 0.00 0.00 3.85
44 45 3.557898 GCAGAGAAGAGGTGAATCCACAA 60.558 47.826 0.00 0.00 44.93 3.33
48 49 2.486472 AGAGGTGAATCCACAAGCTG 57.514 50.000 0.00 0.00 44.93 4.24
87 88 1.829849 GGAGAGTTTACCCTAACCGCT 59.170 52.381 0.00 0.00 0.00 5.52
88 89 3.026694 GGAGAGTTTACCCTAACCGCTA 58.973 50.000 0.00 0.00 0.00 4.26
89 90 3.067883 GGAGAGTTTACCCTAACCGCTAG 59.932 52.174 0.00 0.00 0.00 3.42
90 91 3.698539 GAGAGTTTACCCTAACCGCTAGT 59.301 47.826 0.00 0.00 0.00 2.57
96 98 3.091633 ACCCTAACCGCTAGTGTTAGA 57.908 47.619 24.27 3.87 45.10 2.10
100 102 3.315749 CCTAACCGCTAGTGTTAGAGGAG 59.684 52.174 24.27 11.68 46.45 3.69
106 108 3.632604 CGCTAGTGTTAGAGGAGGAATCA 59.367 47.826 0.00 0.00 0.00 2.57
107 109 4.098044 CGCTAGTGTTAGAGGAGGAATCAA 59.902 45.833 0.00 0.00 0.00 2.57
108 110 5.353111 GCTAGTGTTAGAGGAGGAATCAAC 58.647 45.833 0.00 0.00 0.00 3.18
114 116 7.989741 AGTGTTAGAGGAGGAATCAACATATTG 59.010 37.037 0.00 0.00 37.14 1.90
176 185 3.279434 ACAAGCGGTGATATTTCCTTCC 58.721 45.455 0.00 0.00 0.00 3.46
179 188 5.123227 CAAGCGGTGATATTTCCTTCCTAA 58.877 41.667 0.00 0.00 0.00 2.69
187 196 7.342026 GGTGATATTTCCTTCCTAACATGGTTT 59.658 37.037 0.00 0.00 0.00 3.27
191 200 3.670625 TCCTTCCTAACATGGTTTCACG 58.329 45.455 0.00 0.00 0.00 4.35
201 210 2.613506 GGTTTCACGCCACTTCCCG 61.614 63.158 0.00 0.00 0.00 5.14
206 215 1.890041 CACGCCACTTCCCGTCAAA 60.890 57.895 0.00 0.00 35.17 2.69
211 220 0.328258 CCACTTCCCGTCAAATCCCT 59.672 55.000 0.00 0.00 0.00 4.20
213 222 0.322546 ACTTCCCGTCAAATCCCTGC 60.323 55.000 0.00 0.00 0.00 4.85
215 224 3.508840 CCCGTCAAATCCCTGCGC 61.509 66.667 0.00 0.00 0.00 6.09
232 241 2.781158 GCGCCCCTGTCTCTCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
233 242 1.077068 CGCCCCTGTCTCTCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
234 243 0.682855 CGCCCCTGTCTCTCTCTCTT 60.683 60.000 0.00 0.00 0.00 2.85
238 247 1.742831 CCCTGTCTCTCTCTCTTCACG 59.257 57.143 0.00 0.00 0.00 4.35
239 248 1.132262 CCTGTCTCTCTCTCTTCACGC 59.868 57.143 0.00 0.00 0.00 5.34
240 249 1.809547 CTGTCTCTCTCTCTTCACGCA 59.190 52.381 0.00 0.00 0.00 5.24
241 250 2.423185 CTGTCTCTCTCTCTTCACGCAT 59.577 50.000 0.00 0.00 0.00 4.73
245 254 1.747924 TCTCTCTCTTCACGCATCCAG 59.252 52.381 0.00 0.00 0.00 3.86
246 255 1.747924 CTCTCTCTTCACGCATCCAGA 59.252 52.381 0.00 0.00 0.00 3.86
257 266 2.355756 ACGCATCCAGAAACATACATGC 59.644 45.455 0.00 0.00 34.54 4.06
259 268 2.954318 GCATCCAGAAACATACATGCCT 59.046 45.455 0.00 0.00 32.20 4.75
262 271 4.574674 TCCAGAAACATACATGCCTTCT 57.425 40.909 0.00 2.74 35.10 2.85
263 272 4.264253 TCCAGAAACATACATGCCTTCTG 58.736 43.478 18.80 18.80 43.54 3.02
264 273 4.627611 CAGAAACATACATGCCTTCTGG 57.372 45.455 18.35 7.54 42.00 3.86
266 275 4.095483 CAGAAACATACATGCCTTCTGGAC 59.905 45.833 18.35 0.00 42.00 4.02
277 286 3.282021 GCCTTCTGGACTATTGCAATCA 58.718 45.455 16.86 6.79 34.57 2.57
281 290 3.877559 TCTGGACTATTGCAATCACCAG 58.122 45.455 31.50 31.50 42.97 4.00
282 291 2.357009 CTGGACTATTGCAATCACCAGC 59.643 50.000 29.07 14.76 37.27 4.85
284 293 1.678101 GACTATTGCAATCACCAGCCC 59.322 52.381 16.86 0.11 0.00 5.19
285 294 1.035139 CTATTGCAATCACCAGCCCC 58.965 55.000 16.86 0.00 0.00 5.80
290 299 2.676471 AATCACCAGCCCCGTTGC 60.676 61.111 0.00 0.00 0.00 4.17
295 304 4.738998 CCAGCCCCGTTGCCATCA 62.739 66.667 0.00 0.00 0.00 3.07
300 309 1.799258 GCCCCGTTGCCATCATCATC 61.799 60.000 0.00 0.00 0.00 2.92
305 314 2.684374 CCGTTGCCATCATCATCAAGAA 59.316 45.455 0.00 0.00 0.00 2.52
311 320 4.139786 GCCATCATCATCAAGAAGGCTTA 58.860 43.478 0.00 0.00 37.89 3.09
312 321 4.581824 GCCATCATCATCAAGAAGGCTTAA 59.418 41.667 0.00 0.00 37.89 1.85
354 363 2.271800 CTGTCGACTTCAACCCATAGC 58.728 52.381 17.92 0.00 0.00 2.97
644 1000 2.996155 CGAAGCGGTATCATAACTCGT 58.004 47.619 0.00 0.00 0.00 4.18
649 1005 5.252969 AGCGGTATCATAACTCGTAACAA 57.747 39.130 0.00 0.00 0.00 2.83
663 1019 4.061596 TCGTAACAACATCAACAGATGCA 58.938 39.130 5.44 0.00 42.28 3.96
675 1034 7.772292 ACATCAACAGATGCATTAAGTAGTCAT 59.228 33.333 0.00 0.00 42.28 3.06
682 1041 7.874528 CAGATGCATTAAGTAGTCATCATACCA 59.125 37.037 0.00 0.00 36.81 3.25
686 1045 6.992715 GCATTAAGTAGTCATCATACCAAGGT 59.007 38.462 0.00 0.00 0.00 3.50
687 1046 7.171678 GCATTAAGTAGTCATCATACCAAGGTC 59.828 40.741 0.00 0.00 0.00 3.85
689 1048 4.279145 AGTAGTCATCATACCAAGGTCGT 58.721 43.478 0.00 0.00 0.00 4.34
691 1050 2.431057 AGTCATCATACCAAGGTCGTCC 59.569 50.000 0.00 0.00 0.00 4.79
695 1054 0.459585 CATACCAAGGTCGTCCCACG 60.460 60.000 0.00 0.00 44.19 4.94
696 1055 2.234913 ATACCAAGGTCGTCCCACGC 62.235 60.000 0.00 0.00 42.21 5.34
757 1116 2.614134 CCCCCTAAGATCTCTCCGAT 57.386 55.000 0.00 0.00 34.25 4.18
758 1117 2.896039 CCCCCTAAGATCTCTCCGATT 58.104 52.381 0.00 0.00 30.84 3.34
759 1118 3.243724 CCCCCTAAGATCTCTCCGATTT 58.756 50.000 0.00 0.00 30.84 2.17
760 1119 3.259625 CCCCCTAAGATCTCTCCGATTTC 59.740 52.174 0.00 0.00 30.84 2.17
761 1120 3.057174 CCCCTAAGATCTCTCCGATTTCG 60.057 52.174 0.00 0.00 39.44 3.46
762 1121 3.570559 CCTAAGATCTCTCCGATTTCGC 58.429 50.000 0.00 0.00 38.18 4.70
765 1124 0.664767 GATCTCTCCGATTTCGCCCG 60.665 60.000 0.00 0.00 38.18 6.13
789 1148 1.593933 TCGCGCGAAAACTAAAACACT 59.406 42.857 32.97 0.00 0.00 3.55
793 1152 4.947933 CGCGCGAAAACTAAAACACTATAG 59.052 41.667 28.94 0.00 0.00 1.31
795 1154 6.527957 GCGCGAAAACTAAAACACTATAGAA 58.472 36.000 12.10 0.00 0.00 2.10
796 1155 6.460763 GCGCGAAAACTAAAACACTATAGAAC 59.539 38.462 12.10 0.00 0.00 3.01
799 1158 7.473411 GCGAAAACTAAAACACTATAGAACACG 59.527 37.037 6.78 0.00 0.00 4.49
800 1159 8.693504 CGAAAACTAAAACACTATAGAACACGA 58.306 33.333 6.78 0.00 0.00 4.35
816 1179 6.084277 AGAACACGAAGAAAAGTGACAAAAC 58.916 36.000 2.42 0.00 40.56 2.43
817 1180 5.365403 ACACGAAGAAAAGTGACAAAACA 57.635 34.783 2.42 0.00 40.56 2.83
818 1181 5.151389 ACACGAAGAAAAGTGACAAAACAC 58.849 37.500 2.42 0.00 40.56 3.32
820 1183 4.216687 ACGAAGAAAAGTGACAAAACACCA 59.783 37.500 0.00 0.00 41.12 4.17
833 1196 2.507407 AACACCACACACAAACTCCT 57.493 45.000 0.00 0.00 0.00 3.69
847 1210 5.049129 CACAAACTCCTCAAATTCTCCTCAC 60.049 44.000 0.00 0.00 0.00 3.51
912 1279 1.262640 TACTTTGCCCTCGTCCTCCC 61.263 60.000 0.00 0.00 0.00 4.30
917 1284 4.862823 CCCTCGTCCTCCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
918 1285 4.862823 CCTCGTCCTCCCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
919 1286 3.756783 CTCGTCCTCCCCTCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
920 1287 4.075793 TCGTCCTCCCCTCCCCTG 62.076 72.222 0.00 0.00 0.00 4.45
972 1339 1.131771 GAAAAACAAAGGCAGCGAGC 58.868 50.000 0.00 0.00 44.65 5.03
1006 1373 0.739813 GCGAGCGAGAGGGCTAAAAA 60.740 55.000 0.00 0.00 44.93 1.94
1019 1386 2.143122 GCTAAAAAGGCCAGCAAAACC 58.857 47.619 5.01 0.00 35.35 3.27
1020 1387 2.766313 CTAAAAAGGCCAGCAAAACCC 58.234 47.619 5.01 0.00 0.00 4.11
1021 1388 1.212375 AAAAAGGCCAGCAAAACCCT 58.788 45.000 5.01 0.00 0.00 4.34
1022 1389 2.095604 AAAAGGCCAGCAAAACCCTA 57.904 45.000 5.01 0.00 0.00 3.53
1023 1390 2.095604 AAAGGCCAGCAAAACCCTAA 57.904 45.000 5.01 0.00 0.00 2.69
1024 1391 1.338107 AAGGCCAGCAAAACCCTAAC 58.662 50.000 5.01 0.00 0.00 2.34
1025 1392 0.541998 AGGCCAGCAAAACCCTAACC 60.542 55.000 5.01 0.00 0.00 2.85
1026 1393 1.541310 GGCCAGCAAAACCCTAACCC 61.541 60.000 0.00 0.00 0.00 4.11
1027 1394 0.541998 GCCAGCAAAACCCTAACCCT 60.542 55.000 0.00 0.00 0.00 4.34
1028 1395 1.272258 GCCAGCAAAACCCTAACCCTA 60.272 52.381 0.00 0.00 0.00 3.53
1029 1396 2.820105 GCCAGCAAAACCCTAACCCTAA 60.820 50.000 0.00 0.00 0.00 2.69
1030 1397 3.089284 CCAGCAAAACCCTAACCCTAAG 58.911 50.000 0.00 0.00 0.00 2.18
1031 1398 2.492088 CAGCAAAACCCTAACCCTAAGC 59.508 50.000 0.00 0.00 0.00 3.09
1032 1399 2.109304 AGCAAAACCCTAACCCTAAGCA 59.891 45.455 0.00 0.00 0.00 3.91
1033 1400 3.096852 GCAAAACCCTAACCCTAAGCAT 58.903 45.455 0.00 0.00 0.00 3.79
1034 1401 3.130516 GCAAAACCCTAACCCTAAGCATC 59.869 47.826 0.00 0.00 0.00 3.91
1035 1402 3.664551 AAACCCTAACCCTAAGCATCC 57.335 47.619 0.00 0.00 0.00 3.51
1036 1403 1.519498 ACCCTAACCCTAAGCATCCC 58.481 55.000 0.00 0.00 0.00 3.85
1037 1404 1.274767 ACCCTAACCCTAAGCATCCCA 60.275 52.381 0.00 0.00 0.00 4.37
1038 1405 1.850345 CCCTAACCCTAAGCATCCCAA 59.150 52.381 0.00 0.00 0.00 4.12
1039 1406 2.447047 CCCTAACCCTAAGCATCCCAAT 59.553 50.000 0.00 0.00 0.00 3.16
1040 1407 3.117131 CCCTAACCCTAAGCATCCCAATT 60.117 47.826 0.00 0.00 0.00 2.32
1041 1408 4.145052 CCTAACCCTAAGCATCCCAATTC 58.855 47.826 0.00 0.00 0.00 2.17
1042 1409 2.755952 ACCCTAAGCATCCCAATTCC 57.244 50.000 0.00 0.00 0.00 3.01
1043 1410 1.217942 ACCCTAAGCATCCCAATTCCC 59.782 52.381 0.00 0.00 0.00 3.97
1044 1411 1.481242 CCCTAAGCATCCCAATTCCCC 60.481 57.143 0.00 0.00 0.00 4.81
1045 1412 1.481242 CCTAAGCATCCCAATTCCCCC 60.481 57.143 0.00 0.00 0.00 5.40
1046 1413 1.217689 CTAAGCATCCCAATTCCCCCA 59.782 52.381 0.00 0.00 0.00 4.96
1047 1414 0.417035 AAGCATCCCAATTCCCCCAA 59.583 50.000 0.00 0.00 0.00 4.12
1048 1415 0.643822 AGCATCCCAATTCCCCCAAT 59.356 50.000 0.00 0.00 0.00 3.16
1049 1416 1.051008 GCATCCCAATTCCCCCAATC 58.949 55.000 0.00 0.00 0.00 2.67
1050 1417 1.720781 CATCCCAATTCCCCCAATCC 58.279 55.000 0.00 0.00 0.00 3.01
1051 1418 0.567687 ATCCCAATTCCCCCAATCCC 59.432 55.000 0.00 0.00 0.00 3.85
1052 1419 1.457455 CCCAATTCCCCCAATCCCG 60.457 63.158 0.00 0.00 0.00 5.14
1053 1420 1.618030 CCAATTCCCCCAATCCCGA 59.382 57.895 0.00 0.00 0.00 5.14
1054 1421 0.032615 CCAATTCCCCCAATCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
1055 1422 1.412937 CCAATTCCCCCAATCCCGAAT 60.413 52.381 0.00 0.00 0.00 3.34
1056 1423 1.963515 CAATTCCCCCAATCCCGAATC 59.036 52.381 0.00 0.00 0.00 2.52
1057 1424 0.482887 ATTCCCCCAATCCCGAATCC 59.517 55.000 0.00 0.00 0.00 3.01
1058 1425 1.651214 TTCCCCCAATCCCGAATCCC 61.651 60.000 0.00 0.00 0.00 3.85
1059 1426 2.520968 CCCCAATCCCGAATCCCC 59.479 66.667 0.00 0.00 0.00 4.81
1060 1427 2.520968 CCCAATCCCGAATCCCCC 59.479 66.667 0.00 0.00 0.00 5.40
1061 1428 2.391130 CCCAATCCCGAATCCCCCA 61.391 63.158 0.00 0.00 0.00 4.96
1062 1429 1.152756 CCAATCCCGAATCCCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
1063 1430 1.152756 CAATCCCGAATCCCCCACC 60.153 63.158 0.00 0.00 0.00 4.61
1064 1431 2.391972 AATCCCGAATCCCCCACCC 61.392 63.158 0.00 0.00 0.00 4.61
1069 1436 3.805497 GAATCCCCCACCCCCGTC 61.805 72.222 0.00 0.00 0.00 4.79
1083 1450 3.708544 CGTCGCCCCCAAACCCTA 61.709 66.667 0.00 0.00 0.00 3.53
1084 1451 3.004090 GTCGCCCCCAAACCCTAT 58.996 61.111 0.00 0.00 0.00 2.57
1085 1452 1.153025 GTCGCCCCCAAACCCTATC 60.153 63.158 0.00 0.00 0.00 2.08
1086 1453 2.194868 CGCCCCCAAACCCTATCC 59.805 66.667 0.00 0.00 0.00 2.59
1087 1454 2.607025 GCCCCCAAACCCTATCCC 59.393 66.667 0.00 0.00 0.00 3.85
1088 1455 2.012794 GCCCCCAAACCCTATCCCT 61.013 63.158 0.00 0.00 0.00 4.20
1089 1456 1.930520 CCCCCAAACCCTATCCCTG 59.069 63.158 0.00 0.00 0.00 4.45
1090 1457 0.626277 CCCCCAAACCCTATCCCTGA 60.626 60.000 0.00 0.00 0.00 3.86
1091 1458 0.551396 CCCCAAACCCTATCCCTGAC 59.449 60.000 0.00 0.00 0.00 3.51
1092 1459 0.551396 CCCAAACCCTATCCCTGACC 59.449 60.000 0.00 0.00 0.00 4.02
1093 1460 1.596496 CCAAACCCTATCCCTGACCT 58.404 55.000 0.00 0.00 0.00 3.85
1094 1461 1.212935 CCAAACCCTATCCCTGACCTG 59.787 57.143 0.00 0.00 0.00 4.00
1095 1462 0.919710 AAACCCTATCCCTGACCTGC 59.080 55.000 0.00 0.00 0.00 4.85
1096 1463 0.988678 AACCCTATCCCTGACCTGCC 60.989 60.000 0.00 0.00 0.00 4.85
1097 1464 2.150051 CCCTATCCCTGACCTGCCC 61.150 68.421 0.00 0.00 0.00 5.36
1098 1465 2.150051 CCTATCCCTGACCTGCCCC 61.150 68.421 0.00 0.00 0.00 5.80
1099 1466 2.039831 TATCCCTGACCTGCCCCC 60.040 66.667 0.00 0.00 0.00 5.40
1130 1497 3.842923 CGACGATGGCAGGCTCCT 61.843 66.667 0.00 0.00 0.00 3.69
1131 1498 2.107953 GACGATGGCAGGCTCCTC 59.892 66.667 0.00 0.00 0.00 3.71
1132 1499 3.453070 GACGATGGCAGGCTCCTCC 62.453 68.421 0.00 0.00 0.00 4.30
1133 1500 4.598894 CGATGGCAGGCTCCTCCG 62.599 72.222 0.00 4.65 40.77 4.63
1134 1501 4.247380 GATGGCAGGCTCCTCCGG 62.247 72.222 0.00 0.00 40.77 5.14
1363 1945 1.355916 GGATTCCGACGACTCCTCG 59.644 63.158 0.00 0.00 46.06 4.63
1381 1963 1.920835 GTCCACCTCCTCCAAGCCT 60.921 63.158 0.00 0.00 0.00 4.58
1480 2065 1.985116 GGACAGGTTCCTCGCCTCT 60.985 63.158 0.00 0.00 41.95 3.69
1549 2134 3.853104 ATGCCTAAGCGTGCTGTTA 57.147 47.368 0.00 0.00 44.31 2.41
1552 2137 3.469008 TGCCTAAGCGTGCTGTTATAT 57.531 42.857 0.00 0.00 44.31 0.86
1553 2138 3.130633 TGCCTAAGCGTGCTGTTATATG 58.869 45.455 0.00 0.00 44.31 1.78
1554 2139 2.096218 GCCTAAGCGTGCTGTTATATGC 60.096 50.000 0.00 0.00 0.00 3.14
1572 2160 4.729552 ATGCAGATTACATATGTGGGGT 57.270 40.909 18.81 1.45 0.00 4.95
1574 2162 3.457749 TGCAGATTACATATGTGGGGTGA 59.542 43.478 18.81 0.00 0.00 4.02
1581 2169 1.133792 CATATGTGGGGTGAAGGGTCC 60.134 57.143 0.00 0.00 0.00 4.46
1636 2224 7.611213 ATTTAGTAAGCTGCTAAAACGTGAT 57.389 32.000 20.52 7.08 40.44 3.06
1702 2294 5.006153 TGTTCACCGACATAGGTCTATTG 57.994 43.478 5.91 0.25 43.89 1.90
1709 2301 4.489810 CGACATAGGTCTATTGAGATGGC 58.510 47.826 5.91 0.00 42.05 4.40
1814 2406 6.158598 ACTGCATTTCGCTTGAATTTATTGT 58.841 32.000 0.00 0.00 43.06 2.71
1885 2477 3.382546 AGCAGCAACTGTTGTTCAATTCT 59.617 39.130 20.57 5.70 33.52 2.40
1889 2481 3.908382 GCAACTGTTGTTCAATTCTAGCG 59.092 43.478 20.57 0.00 33.52 4.26
1900 2492 6.127281 TGTTCAATTCTAGCGTGGTCCTAATA 60.127 38.462 0.00 0.00 0.00 0.98
1952 2557 2.579873 CCCCAACTGATGATTGCTAGG 58.420 52.381 0.00 0.00 0.00 3.02
2008 2616 2.543641 GCTTATTCAGCCATTGGTTGC 58.456 47.619 14.22 0.00 43.65 4.17
2044 2653 7.724305 TTTAAGCACTACTTTCCTAGTGTTG 57.276 36.000 7.90 0.00 43.87 3.33
2052 2661 2.107950 TTCCTAGTGTTGGCGAATGG 57.892 50.000 0.00 0.00 0.00 3.16
2159 2768 6.645790 ACTCTCATTTTTCTTGCAATCTGT 57.354 33.333 0.00 0.00 0.00 3.41
2169 2778 5.101648 TCTTGCAATCTGTGTATCCATGA 57.898 39.130 0.00 0.00 0.00 3.07
2216 2825 8.897752 GCCATCTACAAATCATTAGTTTCTCTT 58.102 33.333 0.00 0.00 0.00 2.85
2233 2842 7.391833 AGTTTCTCTTAAGGATTCAACCATGTC 59.608 37.037 1.85 0.00 0.00 3.06
2247 2856 2.682856 ACCATGTCGTGATATTTGCACC 59.317 45.455 0.00 0.00 32.74 5.01
2257 2866 4.009675 TGATATTTGCACCTGTTCTGTCC 58.990 43.478 0.00 0.00 0.00 4.02
2260 2869 2.280797 GCACCTGTTCTGTCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
2263 2872 1.227556 ACCTGTTCTGTCCGCACAC 60.228 57.895 0.00 0.00 0.00 3.82
2274 2883 3.149981 TGTCCGCACACAATGGATTTTA 58.850 40.909 0.00 0.00 33.63 1.52
2285 2894 7.062138 CACACAATGGATTTTAATTTCCAGTCG 59.938 37.037 11.33 6.23 44.87 4.18
2622 3241 4.031028 GCGCTATGCAAAGTTATGACTTG 58.969 43.478 3.30 0.26 45.18 3.16
2624 3243 5.631026 CGCTATGCAAAGTTATGACTTGTT 58.369 37.500 3.30 0.00 45.18 2.83
2646 3265 5.743636 TGGAAATTCTCCCTTTTGGAATG 57.256 39.130 0.00 0.00 44.57 2.67
2674 3293 3.452627 ACAGTCCATAGGTCAATCTGTCC 59.547 47.826 0.00 0.00 30.43 4.02
2896 3519 4.082787 CCGATACTGTTTGGCAAAACTGAT 60.083 41.667 25.34 15.69 45.01 2.90
2928 3551 6.427242 GGAGAGATTTCCGTTTGTTTCTACTT 59.573 38.462 0.00 0.00 0.00 2.24
2935 3558 7.619964 TTCCGTTTGTTTCTACTTCTTTTCT 57.380 32.000 0.00 0.00 0.00 2.52
2970 3593 5.382618 AGGAAAATTCTACTGCTTTGCTG 57.617 39.130 0.00 0.00 29.59 4.41
2973 3596 6.210185 AGGAAAATTCTACTGCTTTGCTGAAT 59.790 34.615 3.58 0.00 29.59 2.57
3002 3653 1.880027 ACTTTCGTGGTGAAATCCTGC 59.120 47.619 0.00 0.00 45.21 4.85
3013 3664 2.489329 TGAAATCCTGCTTAGCTTGTGC 59.511 45.455 5.60 0.00 40.05 4.57
3016 3667 1.238439 TCCTGCTTAGCTTGTGCAAC 58.762 50.000 5.60 0.00 42.74 4.17
3019 3670 2.035066 CCTGCTTAGCTTGTGCAACTTT 59.965 45.455 5.60 0.00 42.74 2.66
3053 3704 7.502895 TCTCCTTTATCTACCTGTACAGATGTC 59.497 40.741 24.68 0.00 33.58 3.06
3093 3744 5.355350 ACTTAGTGCTTGCCATTTCTATGAC 59.645 40.000 0.00 0.00 33.37 3.06
3104 3755 3.926058 TTTCTATGACCTAGGGTTGGC 57.074 47.619 14.81 0.00 35.25 4.52
3180 3832 8.578151 ACAAAAGTAGACGAATAAGAGAAGTCT 58.422 33.333 0.00 2.01 43.58 3.24
3198 3850 7.093992 AGAAGTCTTGAGAATAGGTTCGAAAG 58.906 38.462 0.00 0.00 39.38 2.62
3509 4161 7.202016 TCTTCGAAAACTCAAAGCATGTTAT 57.798 32.000 0.00 0.00 0.00 1.89
3577 4229 4.162320 TCAGTTCTTGCGGATAGATTTCCT 59.838 41.667 0.00 0.00 33.30 3.36
3601 4253 4.201802 GCTCTAAAGACATTCAGAAGCTGC 60.202 45.833 0.00 0.00 0.00 5.25
3654 4306 5.527951 TGCATGGTATGTTTCAAACACTTC 58.472 37.500 4.73 0.00 45.50 3.01
3937 4633 8.400186 TCATTATAATTAAGCATGATGCCATCG 58.600 33.333 14.72 0.00 46.52 3.84
4279 4978 1.543429 GCCCTGTTTCTAGCGCCATAT 60.543 52.381 2.29 0.00 0.00 1.78
4541 5273 2.049063 GCAGGAGAGCGTCACGTT 60.049 61.111 0.00 0.00 0.00 3.99
4792 5538 1.366111 CGCGGGGGTTGTATCAGTTG 61.366 60.000 0.00 0.00 0.00 3.16
4904 5651 3.432326 GGGGAGTTACAGATGTGATGGAC 60.432 52.174 0.00 0.00 0.00 4.02
4907 5654 3.096852 AGTTACAGATGTGATGGACCGA 58.903 45.455 0.00 0.00 0.00 4.69
4911 5658 1.667724 CAGATGTGATGGACCGAAAGC 59.332 52.381 0.00 0.00 0.00 3.51
4937 5684 8.594687 CACAATTGGAGACTTGTAAAACTTTTG 58.405 33.333 10.83 0.00 33.96 2.44
4939 5686 9.533253 CAATTGGAGACTTGTAAAACTTTTGAT 57.467 29.630 0.00 0.00 0.00 2.57
4941 5688 7.873719 TGGAGACTTGTAAAACTTTTGATGA 57.126 32.000 0.00 0.00 0.00 2.92
5045 5795 1.630369 CCATCTTGTCTTGGTCCTGGA 59.370 52.381 0.00 0.00 0.00 3.86
5047 5797 2.103153 TCTTGTCTTGGTCCTGGACT 57.897 50.000 25.01 0.00 32.47 3.85
5049 5799 1.002544 CTTGTCTTGGTCCTGGACTCC 59.997 57.143 25.01 11.37 32.47 3.85
5051 5801 0.610687 GTCTTGGTCCTGGACTCCTG 59.389 60.000 25.01 13.35 32.47 3.86
5052 5802 0.545309 TCTTGGTCCTGGACTCCTGG 60.545 60.000 25.01 13.77 42.93 4.45
5054 5804 3.403558 GGTCCTGGACTCCTGGGC 61.404 72.222 25.01 17.17 44.87 5.36
5055 5805 2.607750 GTCCTGGACTCCTGGGCA 60.608 66.667 19.53 0.14 44.94 5.36
5057 5807 4.087892 CCTGGACTCCTGGGCACG 62.088 72.222 12.37 0.00 38.71 5.34
5081 5883 3.941483 CCACTTGGCTACAGGTAATCTTG 59.059 47.826 0.00 0.00 34.86 3.02
5098 5904 8.184192 GGTAATCTTGTGGATTTTGTATGACAG 58.816 37.037 0.00 0.00 41.42 3.51
5103 5909 8.298854 TCTTGTGGATTTTGTATGACAGAATTG 58.701 33.333 0.00 0.00 33.70 2.32
5104 5910 6.389091 TGTGGATTTTGTATGACAGAATTGC 58.611 36.000 0.00 0.00 33.70 3.56
5126 5932 3.181436 CCAGAGCATTGGGGAGTTCATAT 60.181 47.826 0.00 0.00 34.46 1.78
5128 5934 4.891756 CAGAGCATTGGGGAGTTCATATTT 59.108 41.667 0.00 0.00 0.00 1.40
5129 5935 5.361857 CAGAGCATTGGGGAGTTCATATTTT 59.638 40.000 0.00 0.00 0.00 1.82
5130 5936 6.547141 CAGAGCATTGGGGAGTTCATATTTTA 59.453 38.462 0.00 0.00 0.00 1.52
5132 5938 8.448008 AGAGCATTGGGGAGTTCATATTTTATA 58.552 33.333 0.00 0.00 0.00 0.98
5133 5939 8.409358 AGCATTGGGGAGTTCATATTTTATAC 57.591 34.615 0.00 0.00 0.00 1.47
5134 5940 8.227507 AGCATTGGGGAGTTCATATTTTATACT 58.772 33.333 0.00 0.00 0.00 2.12
5135 5941 8.515414 GCATTGGGGAGTTCATATTTTATACTC 58.485 37.037 0.00 0.00 35.61 2.59
5142 5948 8.652290 GGAGTTCATATTTTATACTCCCTCTGT 58.348 37.037 8.10 0.00 45.84 3.41
5145 5951 9.274206 GTTCATATTTTATACTCCCTCTGTTCC 57.726 37.037 0.00 0.00 0.00 3.62
5146 5952 8.798975 TCATATTTTATACTCCCTCTGTTCCT 57.201 34.615 0.00 0.00 0.00 3.36
5147 5953 9.892444 TCATATTTTATACTCCCTCTGTTCCTA 57.108 33.333 0.00 0.00 0.00 2.94
5151 5957 9.853177 ATTTTATACTCCCTCTGTTCCTAAATG 57.147 33.333 0.00 0.00 0.00 2.32
5152 5958 7.989947 TTATACTCCCTCTGTTCCTAAATGT 57.010 36.000 0.00 0.00 0.00 2.71
5153 5959 9.496710 TTTATACTCCCTCTGTTCCTAAATGTA 57.503 33.333 0.00 0.00 0.00 2.29
5154 5960 7.989947 ATACTCCCTCTGTTCCTAAATGTAA 57.010 36.000 0.00 0.00 0.00 2.41
5155 5961 6.301169 ACTCCCTCTGTTCCTAAATGTAAG 57.699 41.667 0.00 0.00 0.00 2.34
5156 5962 5.785940 ACTCCCTCTGTTCCTAAATGTAAGT 59.214 40.000 0.00 0.00 0.00 2.24
5157 5963 6.070710 ACTCCCTCTGTTCCTAAATGTAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
5158 5964 6.023603 TCCCTCTGTTCCTAAATGTAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
5159 5965 6.500751 TCCCTCTGTTCCTAAATGTAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
5160 5966 7.017254 TCCCTCTGTTCCTAAATGTAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
5161 5967 7.665974 CCCTCTGTTCCTAAATGTAAGTCTTTT 59.334 37.037 0.00 0.00 0.00 2.27
5162 5968 9.067986 CCTCTGTTCCTAAATGTAAGTCTTTTT 57.932 33.333 0.00 0.00 0.00 1.94
5176 5982 9.924650 TGTAAGTCTTTTTAGAGATTCCACTAC 57.075 33.333 0.00 0.00 0.00 2.73
5177 5983 9.924650 GTAAGTCTTTTTAGAGATTCCACTACA 57.075 33.333 0.00 0.00 0.00 2.74
5179 5985 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
5180 5986 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
5181 5987 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
5188 5994 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
5189 5995 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
5190 5996 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
5191 5997 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
5192 5998 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
5194 6000 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
5195 6001 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
5196 6002 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
5223 6029 8.635877 AGACATATTTTCGAGTGTAGATTCAC 57.364 34.615 0.00 0.00 38.46 3.18
5234 6040 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5235 6041 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
5236 6042 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
5237 6043 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
5238 6044 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
5239 6045 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
5240 6046 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
5241 6047 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
5242 6048 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
5243 6049 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
5244 6050 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
5245 6051 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
5246 6052 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
5247 6053 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
5248 6054 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
5249 6055 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
5250 6056 7.879677 TCATTTTGCTCCATATGTAGTCCATAG 59.120 37.037 1.24 0.00 39.36 2.23
5251 6057 6.747414 TTTGCTCCATATGTAGTCCATAGT 57.253 37.500 1.24 0.00 39.36 2.12
5252 6058 7.849322 TTTGCTCCATATGTAGTCCATAGTA 57.151 36.000 1.24 0.00 39.36 1.82
5253 6059 7.468141 TTGCTCCATATGTAGTCCATAGTAG 57.532 40.000 1.24 0.00 39.36 2.57
5254 6060 6.790319 TGCTCCATATGTAGTCCATAGTAGA 58.210 40.000 1.24 0.00 39.36 2.59
5255 6061 7.238710 TGCTCCATATGTAGTCCATAGTAGAA 58.761 38.462 1.24 0.00 39.36 2.10
5256 6062 7.895962 TGCTCCATATGTAGTCCATAGTAGAAT 59.104 37.037 1.24 0.00 39.36 2.40
5257 6063 8.410141 GCTCCATATGTAGTCCATAGTAGAATC 58.590 40.741 1.24 0.00 39.36 2.52
5258 6064 9.693739 CTCCATATGTAGTCCATAGTAGAATCT 57.306 37.037 1.24 0.00 39.36 2.40
5259 6065 9.688091 TCCATATGTAGTCCATAGTAGAATCTC 57.312 37.037 1.24 0.00 39.36 2.75
5260 6066 9.693739 CCATATGTAGTCCATAGTAGAATCTCT 57.306 37.037 1.24 0.00 39.36 3.10
5288 6094 8.507524 AAAGACTTAAATTTAGGAATCGAGGG 57.492 34.615 13.73 0.00 0.00 4.30
5289 6095 7.433537 AGACTTAAATTTAGGAATCGAGGGA 57.566 36.000 13.73 0.00 0.00 4.20
5290 6096 7.501844 AGACTTAAATTTAGGAATCGAGGGAG 58.498 38.462 13.73 0.00 0.00 4.30
5291 6097 7.125963 AGACTTAAATTTAGGAATCGAGGGAGT 59.874 37.037 13.73 2.90 0.00 3.85
5292 6098 8.315220 ACTTAAATTTAGGAATCGAGGGAGTA 57.685 34.615 13.73 0.00 0.00 2.59
5293 6099 8.935741 ACTTAAATTTAGGAATCGAGGGAGTAT 58.064 33.333 13.73 0.00 0.00 2.12
5377 6184 1.134848 GCCACTTGTTTTGCCTTGTGA 60.135 47.619 0.00 0.00 0.00 3.58
5380 6187 3.803778 CCACTTGTTTTGCCTTGTGAATC 59.196 43.478 0.00 0.00 0.00 2.52
5381 6188 3.803778 CACTTGTTTTGCCTTGTGAATCC 59.196 43.478 0.00 0.00 0.00 3.01
5382 6189 3.181466 ACTTGTTTTGCCTTGTGAATCCC 60.181 43.478 0.00 0.00 0.00 3.85
5383 6190 2.392662 TGTTTTGCCTTGTGAATCCCA 58.607 42.857 0.00 0.00 0.00 4.37
5445 6259 4.791163 CGACCGAAAAATAACATTTGCGAT 59.209 37.500 1.88 0.00 42.69 4.58
5446 6260 5.275234 CGACCGAAAAATAACATTTGCGATG 60.275 40.000 1.88 0.00 42.69 3.84
5449 6263 6.088883 ACCGAAAAATAACATTTGCGATGAAC 59.911 34.615 6.86 0.00 42.69 3.18
5452 6266 7.679634 CGAAAAATAACATTTGCGATGAACAAG 59.320 33.333 6.86 0.00 42.69 3.16
5455 6269 7.566858 AATAACATTTGCGATGAACAAGAAC 57.433 32.000 6.86 0.00 0.00 3.01
5456 6270 4.566545 ACATTTGCGATGAACAAGAACA 57.433 36.364 6.86 0.00 0.00 3.18
5457 6271 4.930963 ACATTTGCGATGAACAAGAACAA 58.069 34.783 6.86 0.00 0.00 2.83
5458 6272 5.347342 ACATTTGCGATGAACAAGAACAAA 58.653 33.333 6.86 0.00 0.00 2.83
5459 6273 5.984926 ACATTTGCGATGAACAAGAACAAAT 59.015 32.000 6.86 0.00 36.87 2.32
5490 6318 2.785713 TTTTACCTCGTGCCAAAAGC 57.214 45.000 0.00 0.00 44.14 3.51
5510 6338 3.995048 AGCGCTGTGATAATCTCATGATG 59.005 43.478 10.39 0.00 35.97 3.07
5517 6345 8.781196 GCTGTGATAATCTCATGATGTATGTTT 58.219 33.333 0.00 0.00 38.01 2.83
5542 6404 5.688348 GACATTACTCGTTCATGTCAGTC 57.312 43.478 13.19 0.00 44.24 3.51
5553 6415 3.361786 TCATGTCAGTCGGTTATCCTCA 58.638 45.455 0.00 0.00 0.00 3.86
5575 6437 5.899120 ACAACTAGTGTGATCTATCGTGT 57.101 39.130 0.00 0.00 39.72 4.49
5577 6439 5.414765 ACAACTAGTGTGATCTATCGTGTCA 59.585 40.000 0.00 0.00 39.72 3.58
5578 6440 6.072119 ACAACTAGTGTGATCTATCGTGTCAA 60.072 38.462 0.00 0.00 39.72 3.18
5600 6462 3.653539 AAACGTCTTACATTTTGGGGC 57.346 42.857 0.00 0.00 0.00 5.80
5601 6463 1.541379 ACGTCTTACATTTTGGGGCC 58.459 50.000 0.00 0.00 0.00 5.80
5602 6464 0.450184 CGTCTTACATTTTGGGGCCG 59.550 55.000 0.00 0.00 0.00 6.13
5603 6465 1.828979 GTCTTACATTTTGGGGCCGA 58.171 50.000 0.00 0.00 0.00 5.54
5604 6466 1.743394 GTCTTACATTTTGGGGCCGAG 59.257 52.381 0.00 0.00 0.00 4.63
5605 6467 1.102978 CTTACATTTTGGGGCCGAGG 58.897 55.000 0.00 0.00 0.00 4.63
5606 6468 0.323908 TTACATTTTGGGGCCGAGGG 60.324 55.000 0.00 0.00 0.00 4.30
5608 6470 1.754234 CATTTTGGGGCCGAGGGAG 60.754 63.158 0.00 0.00 0.00 4.30
5611 6473 0.917333 TTTTGGGGCCGAGGGAGTAT 60.917 55.000 0.00 0.00 0.00 2.12
5612 6474 1.342672 TTTGGGGCCGAGGGAGTATC 61.343 60.000 0.00 0.00 0.00 2.24
5613 6475 3.303928 GGGGCCGAGGGAGTATCG 61.304 72.222 0.00 0.00 39.86 2.92
5631 6536 8.470002 GGAGTATCGGGTAAAAGAAAACTAGTA 58.530 37.037 0.00 0.00 34.37 1.82
5632 6537 9.513727 GAGTATCGGGTAAAAGAAAACTAGTAG 57.486 37.037 0.00 0.00 0.00 2.57
5633 6538 9.029368 AGTATCGGGTAAAAGAAAACTAGTAGT 57.971 33.333 0.00 0.00 0.00 2.73
5634 6539 9.080915 GTATCGGGTAAAAGAAAACTAGTAGTG 57.919 37.037 2.90 0.00 0.00 2.74
5636 6541 6.925165 TCGGGTAAAAGAAAACTAGTAGTGTG 59.075 38.462 2.90 0.00 0.00 3.82
5639 6548 9.933723 GGGTAAAAGAAAACTAGTAGTGTGATA 57.066 33.333 2.90 0.00 0.00 2.15
5692 6869 1.792757 ATGGTCTCAGCTGGCCCAAA 61.793 55.000 15.13 0.00 0.00 3.28
5695 6872 0.250901 GTCTCAGCTGGCCCAAAGAA 60.251 55.000 15.13 0.00 0.00 2.52
5743 6942 2.600731 CCAAGCACTACTGACGAAGAG 58.399 52.381 0.00 0.00 0.00 2.85
5744 6943 2.229062 CCAAGCACTACTGACGAAGAGA 59.771 50.000 0.00 0.00 0.00 3.10
5886 7137 2.543587 GCACGTTGCATTTCGATCG 58.456 52.632 9.36 9.36 44.26 3.69
5887 7138 1.455908 GCACGTTGCATTTCGATCGC 61.456 55.000 11.09 0.00 44.26 4.58
5888 7139 1.058748 ACGTTGCATTTCGATCGCG 59.941 52.632 11.09 8.10 39.35 5.87
5889 7140 1.648165 CGTTGCATTTCGATCGCGG 60.648 57.895 11.09 0.40 38.28 6.46
5890 7141 1.934476 GTTGCATTTCGATCGCGGC 60.934 57.895 11.09 11.30 38.28 6.53
5891 7142 2.394563 TTGCATTTCGATCGCGGCA 61.395 52.632 11.09 13.77 38.28 5.69
5892 7143 2.351210 GCATTTCGATCGCGGCAC 60.351 61.111 11.09 0.00 38.28 5.01
5893 7144 3.088914 CATTTCGATCGCGGCACA 58.911 55.556 11.09 0.00 38.28 4.57
5894 7145 1.296867 CATTTCGATCGCGGCACAC 60.297 57.895 11.09 0.00 38.28 3.82
5895 7146 2.461110 ATTTCGATCGCGGCACACC 61.461 57.895 11.09 0.00 38.28 4.16
5912 7163 0.324460 ACCGAGGTAACAGAGGGAGG 60.324 60.000 0.00 0.00 41.41 4.30
5913 7164 1.043673 CCGAGGTAACAGAGGGAGGG 61.044 65.000 0.00 0.00 41.41 4.30
5914 7165 0.033405 CGAGGTAACAGAGGGAGGGA 60.033 60.000 0.00 0.00 41.41 4.20
5920 7171 0.787084 AACAGAGGGAGGGAGAGACA 59.213 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.078567 CACCTCTTCTCTGCCTGCC 60.079 63.158 0.00 0.00 0.00 4.85
21 22 1.556911 TGGATTCACCTCTTCTCTGCC 59.443 52.381 0.00 0.00 39.86 4.85
34 35 0.609957 CCAGCCAGCTTGTGGATTCA 60.610 55.000 0.07 0.00 45.28 2.57
60 61 1.117994 GGGTAAACTCTCCCCTACGG 58.882 60.000 0.00 0.00 37.89 4.02
87 88 8.783660 ATATGTTGATTCCTCCTCTAACACTA 57.216 34.615 0.00 0.00 31.75 2.74
88 89 7.682787 ATATGTTGATTCCTCCTCTAACACT 57.317 36.000 0.00 0.00 31.75 3.55
89 90 7.987458 TCAATATGTTGATTCCTCCTCTAACAC 59.013 37.037 0.03 0.00 39.36 3.32
90 91 8.089625 TCAATATGTTGATTCCTCCTCTAACA 57.910 34.615 0.03 0.00 39.36 2.41
96 98 6.331042 TCCATCTCAATATGTTGATTCCTCCT 59.669 38.462 5.26 0.00 43.08 3.69
116 118 9.854668 TGACTTAGCTATAGAGGTATATCCATC 57.145 37.037 3.21 0.00 35.62 3.51
119 121 9.635404 ATGTGACTTAGCTATAGAGGTATATCC 57.365 37.037 3.21 0.00 35.62 2.59
122 124 7.339721 GGCATGTGACTTAGCTATAGAGGTATA 59.660 40.741 3.21 0.00 35.62 1.47
135 137 2.668457 GTCTTCGTGGCATGTGACTTAG 59.332 50.000 19.97 6.78 0.00 2.18
176 185 2.151202 AGTGGCGTGAAACCATGTTAG 58.849 47.619 0.00 0.00 39.95 2.34
179 188 0.951558 GAAGTGGCGTGAAACCATGT 59.048 50.000 0.00 0.00 39.95 3.21
187 196 2.313051 TTTGACGGGAAGTGGCGTGA 62.313 55.000 0.00 0.00 0.00 4.35
191 200 1.313091 GGGATTTGACGGGAAGTGGC 61.313 60.000 0.00 0.00 0.00 5.01
201 210 4.179579 GGCGCGCAGGGATTTGAC 62.180 66.667 34.42 7.22 46.37 3.18
213 222 4.200283 GAGAGAGACAGGGGCGCG 62.200 72.222 0.00 0.00 0.00 6.86
215 224 0.682855 AAGAGAGAGAGACAGGGGCG 60.683 60.000 0.00 0.00 0.00 6.13
227 236 1.839424 TCTGGATGCGTGAAGAGAGA 58.161 50.000 0.00 0.00 0.00 3.10
232 241 3.684305 TGTATGTTTCTGGATGCGTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
233 242 3.669536 TGTATGTTTCTGGATGCGTGAA 58.330 40.909 0.00 0.00 0.00 3.18
234 243 3.326836 TGTATGTTTCTGGATGCGTGA 57.673 42.857 0.00 0.00 0.00 4.35
238 247 2.954318 AGGCATGTATGTTTCTGGATGC 59.046 45.455 0.00 0.00 36.33 3.91
239 248 4.885907 AGAAGGCATGTATGTTTCTGGATG 59.114 41.667 10.71 0.00 34.73 3.51
240 249 4.885907 CAGAAGGCATGTATGTTTCTGGAT 59.114 41.667 20.91 1.99 41.91 3.41
241 250 4.264253 CAGAAGGCATGTATGTTTCTGGA 58.736 43.478 20.91 0.00 41.91 3.86
245 254 4.265073 AGTCCAGAAGGCATGTATGTTTC 58.735 43.478 0.00 0.00 33.74 2.78
246 255 4.307032 AGTCCAGAAGGCATGTATGTTT 57.693 40.909 0.00 0.00 33.74 2.83
257 266 3.629398 GGTGATTGCAATAGTCCAGAAGG 59.371 47.826 12.97 0.00 0.00 3.46
259 268 4.264253 CTGGTGATTGCAATAGTCCAGAA 58.736 43.478 31.58 13.81 42.16 3.02
262 271 2.368439 GCTGGTGATTGCAATAGTCCA 58.632 47.619 12.97 18.11 0.00 4.02
263 272 1.678101 GGCTGGTGATTGCAATAGTCC 59.322 52.381 12.97 14.69 0.00 3.85
264 273 1.678101 GGGCTGGTGATTGCAATAGTC 59.322 52.381 12.97 7.47 0.00 2.59
266 275 1.035139 GGGGCTGGTGATTGCAATAG 58.965 55.000 12.97 7.26 0.00 1.73
277 286 4.740822 GATGGCAACGGGGCTGGT 62.741 66.667 0.00 0.00 43.83 4.00
281 290 1.799258 GATGATGATGGCAACGGGGC 61.799 60.000 0.00 0.00 43.73 5.80
282 291 0.466007 TGATGATGATGGCAACGGGG 60.466 55.000 0.00 0.00 42.51 5.73
284 293 2.291365 TCTTGATGATGATGGCAACGG 58.709 47.619 0.00 0.00 42.51 4.44
285 294 3.242969 CCTTCTTGATGATGATGGCAACG 60.243 47.826 0.00 0.00 42.51 4.10
290 299 6.678878 CATTAAGCCTTCTTGATGATGATGG 58.321 40.000 4.42 0.00 44.47 3.51
293 302 4.274214 CGCATTAAGCCTTCTTGATGATGA 59.726 41.667 12.15 0.00 44.47 2.92
295 304 3.567164 CCGCATTAAGCCTTCTTGATGAT 59.433 43.478 12.15 0.00 44.47 2.45
300 309 0.810648 TGCCGCATTAAGCCTTCTTG 59.189 50.000 0.00 0.00 41.38 3.02
305 314 1.304052 TTGGTGCCGCATTAAGCCT 60.304 52.632 0.00 0.00 41.38 4.58
331 340 1.124780 TGGGTTGAAGTCGACAGGAA 58.875 50.000 19.50 3.65 31.82 3.36
333 342 2.893637 CTATGGGTTGAAGTCGACAGG 58.106 52.381 19.50 0.00 31.82 4.00
335 344 1.621317 TGCTATGGGTTGAAGTCGACA 59.379 47.619 19.50 0.00 31.82 4.35
336 345 2.094182 TCTGCTATGGGTTGAAGTCGAC 60.094 50.000 7.70 7.70 0.00 4.20
337 346 2.176045 TCTGCTATGGGTTGAAGTCGA 58.824 47.619 0.00 0.00 0.00 4.20
344 353 2.487265 GGGTGGTATCTGCTATGGGTTG 60.487 54.545 0.00 0.00 0.00 3.77
347 356 1.434188 TGGGTGGTATCTGCTATGGG 58.566 55.000 0.00 0.00 0.00 4.00
630 986 7.997107 TGATGTTGTTACGAGTTATGATACC 57.003 36.000 0.00 0.00 0.00 2.73
638 994 6.228273 CATCTGTTGATGTTGTTACGAGTT 57.772 37.500 0.00 0.00 43.68 3.01
663 1019 7.069578 ACGACCTTGGTATGATGACTACTTAAT 59.930 37.037 0.00 0.00 0.00 1.40
675 1034 0.899720 GTGGGACGACCTTGGTATGA 59.100 55.000 3.44 0.00 41.11 2.15
702 1061 4.790861 GGTTCGTCTCCCGCGGAC 62.791 72.222 30.73 16.79 37.14 4.79
743 1102 2.296471 GGGCGAAATCGGAGAGATCTTA 59.704 50.000 4.84 0.00 43.63 2.10
744 1103 1.069358 GGGCGAAATCGGAGAGATCTT 59.931 52.381 4.84 0.00 43.63 2.40
745 1104 0.676736 GGGCGAAATCGGAGAGATCT 59.323 55.000 0.00 0.00 43.63 2.75
746 1105 0.664767 CGGGCGAAATCGGAGAGATC 60.665 60.000 4.84 0.00 43.63 2.75
747 1106 1.107538 TCGGGCGAAATCGGAGAGAT 61.108 55.000 4.84 0.00 43.63 2.75
748 1107 1.107538 ATCGGGCGAAATCGGAGAGA 61.108 55.000 4.84 0.00 43.63 3.10
749 1108 0.249489 AATCGGGCGAAATCGGAGAG 60.249 55.000 4.84 0.00 43.63 3.20
750 1109 0.177141 AAATCGGGCGAAATCGGAGA 59.823 50.000 4.84 0.00 45.75 3.71
751 1110 0.582005 GAAATCGGGCGAAATCGGAG 59.418 55.000 4.84 0.00 40.23 4.63
754 1113 1.367665 GCGAAATCGGGCGAAATCG 60.368 57.895 4.84 1.10 40.23 3.34
755 1114 4.589967 GCGAAATCGGGCGAAATC 57.410 55.556 4.84 0.00 40.23 2.17
765 1124 3.660356 TGTTTTAGTTTTCGCGCGAAATC 59.340 39.130 46.10 42.41 42.71 2.17
789 1148 8.651391 TTTGTCACTTTTCTTCGTGTTCTATA 57.349 30.769 0.00 0.00 33.07 1.31
793 1152 5.854338 TGTTTTGTCACTTTTCTTCGTGTTC 59.146 36.000 0.00 0.00 33.07 3.18
795 1154 5.151389 GTGTTTTGTCACTTTTCTTCGTGT 58.849 37.500 0.00 0.00 35.68 4.49
796 1155 4.557301 GGTGTTTTGTCACTTTTCTTCGTG 59.443 41.667 0.00 0.00 38.28 4.35
799 1158 5.344933 GTGTGGTGTTTTGTCACTTTTCTTC 59.655 40.000 0.00 0.00 38.28 2.87
800 1159 5.221342 TGTGTGGTGTTTTGTCACTTTTCTT 60.221 36.000 0.00 0.00 38.28 2.52
801 1160 4.279671 TGTGTGGTGTTTTGTCACTTTTCT 59.720 37.500 0.00 0.00 38.28 2.52
802 1161 4.384547 GTGTGTGGTGTTTTGTCACTTTTC 59.615 41.667 0.00 0.00 38.28 2.29
816 1179 2.036958 TGAGGAGTTTGTGTGTGGTG 57.963 50.000 0.00 0.00 0.00 4.17
817 1180 2.799126 TTGAGGAGTTTGTGTGTGGT 57.201 45.000 0.00 0.00 0.00 4.16
818 1181 4.339247 AGAATTTGAGGAGTTTGTGTGTGG 59.661 41.667 0.00 0.00 0.00 4.17
820 1183 4.580580 GGAGAATTTGAGGAGTTTGTGTGT 59.419 41.667 0.00 0.00 0.00 3.72
833 1196 1.004745 GGCAGGGTGAGGAGAATTTGA 59.995 52.381 0.00 0.00 0.00 2.69
917 1284 2.743928 GAAGACTGGGTGCGCAGG 60.744 66.667 12.22 3.98 0.00 4.85
918 1285 2.031012 TGAAGACTGGGTGCGCAG 59.969 61.111 12.22 13.58 0.00 5.18
919 1286 1.830587 ATCTGAAGACTGGGTGCGCA 61.831 55.000 5.66 5.66 0.00 6.09
920 1287 1.078848 ATCTGAAGACTGGGTGCGC 60.079 57.895 0.00 0.00 0.00 6.09
921 1288 0.460987 GGATCTGAAGACTGGGTGCG 60.461 60.000 0.00 0.00 0.00 5.34
922 1289 0.615331 TGGATCTGAAGACTGGGTGC 59.385 55.000 0.00 0.00 0.00 5.01
923 1290 3.077359 GTTTGGATCTGAAGACTGGGTG 58.923 50.000 0.00 0.00 0.00 4.61
924 1291 2.040412 GGTTTGGATCTGAAGACTGGGT 59.960 50.000 0.00 0.00 0.00 4.51
925 1292 2.619074 GGGTTTGGATCTGAAGACTGGG 60.619 54.545 0.00 0.00 0.00 4.45
926 1293 2.619074 GGGGTTTGGATCTGAAGACTGG 60.619 54.545 0.00 0.00 0.00 4.00
927 1294 2.619074 GGGGGTTTGGATCTGAAGACTG 60.619 54.545 0.00 0.00 0.00 3.51
992 1359 2.781911 GGCCTTTTTAGCCCTCTCG 58.218 57.895 0.00 0.00 45.16 4.04
1006 1373 0.541998 GGTTAGGGTTTTGCTGGCCT 60.542 55.000 3.32 0.00 0.00 5.19
1013 1380 3.699538 GGATGCTTAGGGTTAGGGTTTTG 59.300 47.826 0.00 0.00 0.00 2.44
1014 1381 3.309629 GGGATGCTTAGGGTTAGGGTTTT 60.310 47.826 0.00 0.00 0.00 2.43
1015 1382 2.243994 GGGATGCTTAGGGTTAGGGTTT 59.756 50.000 0.00 0.00 0.00 3.27
1016 1383 1.850998 GGGATGCTTAGGGTTAGGGTT 59.149 52.381 0.00 0.00 0.00 4.11
1017 1384 1.274767 TGGGATGCTTAGGGTTAGGGT 60.275 52.381 0.00 0.00 0.00 4.34
1018 1385 1.518367 TGGGATGCTTAGGGTTAGGG 58.482 55.000 0.00 0.00 0.00 3.53
1019 1386 3.884037 ATTGGGATGCTTAGGGTTAGG 57.116 47.619 0.00 0.00 0.00 2.69
1020 1387 4.145052 GGAATTGGGATGCTTAGGGTTAG 58.855 47.826 0.00 0.00 0.00 2.34
1021 1388 3.117284 GGGAATTGGGATGCTTAGGGTTA 60.117 47.826 0.00 0.00 0.00 2.85
1022 1389 2.359249 GGGAATTGGGATGCTTAGGGTT 60.359 50.000 0.00 0.00 0.00 4.11
1023 1390 1.217942 GGGAATTGGGATGCTTAGGGT 59.782 52.381 0.00 0.00 0.00 4.34
1024 1391 1.481242 GGGGAATTGGGATGCTTAGGG 60.481 57.143 0.00 0.00 0.00 3.53
1025 1392 1.481242 GGGGGAATTGGGATGCTTAGG 60.481 57.143 0.00 0.00 0.00 2.69
1026 1393 1.217689 TGGGGGAATTGGGATGCTTAG 59.782 52.381 0.00 0.00 0.00 2.18
1027 1394 1.313889 TGGGGGAATTGGGATGCTTA 58.686 50.000 0.00 0.00 0.00 3.09
1028 1395 0.417035 TTGGGGGAATTGGGATGCTT 59.583 50.000 0.00 0.00 0.00 3.91
1029 1396 0.643822 ATTGGGGGAATTGGGATGCT 59.356 50.000 0.00 0.00 0.00 3.79
1030 1397 1.051008 GATTGGGGGAATTGGGATGC 58.949 55.000 0.00 0.00 0.00 3.91
1031 1398 1.720781 GGATTGGGGGAATTGGGATG 58.279 55.000 0.00 0.00 0.00 3.51
1032 1399 0.567687 GGGATTGGGGGAATTGGGAT 59.432 55.000 0.00 0.00 0.00 3.85
1033 1400 1.943730 CGGGATTGGGGGAATTGGGA 61.944 60.000 0.00 0.00 0.00 4.37
1034 1401 1.457455 CGGGATTGGGGGAATTGGG 60.457 63.158 0.00 0.00 0.00 4.12
1035 1402 0.032615 TTCGGGATTGGGGGAATTGG 60.033 55.000 0.00 0.00 0.00 3.16
1036 1403 1.963515 GATTCGGGATTGGGGGAATTG 59.036 52.381 0.00 0.00 29.79 2.32
1037 1404 1.133167 GGATTCGGGATTGGGGGAATT 60.133 52.381 0.00 0.00 29.79 2.17
1038 1405 0.482887 GGATTCGGGATTGGGGGAAT 59.517 55.000 0.00 0.00 32.15 3.01
1039 1406 1.651214 GGGATTCGGGATTGGGGGAA 61.651 60.000 0.00 0.00 0.00 3.97
1040 1407 2.082414 GGGATTCGGGATTGGGGGA 61.082 63.158 0.00 0.00 0.00 4.81
1041 1408 2.520968 GGGATTCGGGATTGGGGG 59.479 66.667 0.00 0.00 0.00 5.40
1042 1409 2.520968 GGGGATTCGGGATTGGGG 59.479 66.667 0.00 0.00 0.00 4.96
1043 1410 2.391130 TGGGGGATTCGGGATTGGG 61.391 63.158 0.00 0.00 0.00 4.12
1044 1411 1.152756 GTGGGGGATTCGGGATTGG 60.153 63.158 0.00 0.00 0.00 3.16
1045 1412 1.152756 GGTGGGGGATTCGGGATTG 60.153 63.158 0.00 0.00 0.00 2.67
1046 1413 2.391972 GGGTGGGGGATTCGGGATT 61.392 63.158 0.00 0.00 0.00 3.01
1047 1414 2.776963 GGGTGGGGGATTCGGGAT 60.777 66.667 0.00 0.00 0.00 3.85
1052 1419 3.805497 GACGGGGGTGGGGGATTC 61.805 72.222 0.00 0.00 0.00 2.52
1066 1433 2.935627 GATAGGGTTTGGGGGCGACG 62.936 65.000 0.00 0.00 0.00 5.12
1067 1434 1.153025 GATAGGGTTTGGGGGCGAC 60.153 63.158 0.00 0.00 0.00 5.19
1068 1435 2.380285 GGATAGGGTTTGGGGGCGA 61.380 63.158 0.00 0.00 0.00 5.54
1069 1436 2.194868 GGATAGGGTTTGGGGGCG 59.805 66.667 0.00 0.00 0.00 6.13
1070 1437 2.012794 AGGGATAGGGTTTGGGGGC 61.013 63.158 0.00 0.00 0.00 5.80
1071 1438 0.626277 TCAGGGATAGGGTTTGGGGG 60.626 60.000 0.00 0.00 0.00 5.40
1072 1439 0.551396 GTCAGGGATAGGGTTTGGGG 59.449 60.000 0.00 0.00 0.00 4.96
1073 1440 0.551396 GGTCAGGGATAGGGTTTGGG 59.449 60.000 0.00 0.00 0.00 4.12
1074 1441 1.212935 CAGGTCAGGGATAGGGTTTGG 59.787 57.143 0.00 0.00 0.00 3.28
1075 1442 1.408822 GCAGGTCAGGGATAGGGTTTG 60.409 57.143 0.00 0.00 0.00 2.93
1076 1443 0.919710 GCAGGTCAGGGATAGGGTTT 59.080 55.000 0.00 0.00 0.00 3.27
1077 1444 0.988678 GGCAGGTCAGGGATAGGGTT 60.989 60.000 0.00 0.00 0.00 4.11
1078 1445 1.384643 GGCAGGTCAGGGATAGGGT 60.385 63.158 0.00 0.00 0.00 4.34
1079 1446 2.150051 GGGCAGGTCAGGGATAGGG 61.150 68.421 0.00 0.00 0.00 3.53
1080 1447 2.150051 GGGGCAGGTCAGGGATAGG 61.150 68.421 0.00 0.00 0.00 2.57
1081 1448 2.150051 GGGGGCAGGTCAGGGATAG 61.150 68.421 0.00 0.00 0.00 2.08
1082 1449 2.039831 GGGGGCAGGTCAGGGATA 60.040 66.667 0.00 0.00 0.00 2.59
1113 1480 3.781770 GAGGAGCCTGCCATCGTCG 62.782 68.421 0.00 0.00 0.00 5.12
1114 1481 2.107953 GAGGAGCCTGCCATCGTC 59.892 66.667 0.00 0.00 0.00 4.20
1115 1482 3.474570 GGAGGAGCCTGCCATCGT 61.475 66.667 0.00 0.00 0.00 3.73
1116 1483 4.598894 CGGAGGAGCCTGCCATCG 62.599 72.222 2.26 0.00 0.00 3.84
1155 1522 4.112341 CGCCTTTGAGCTGGCTGC 62.112 66.667 8.47 8.47 46.42 5.25
1342 1924 3.060020 GGAGTCGTCGGAATCCGCA 62.060 63.158 18.15 3.09 46.31 5.69
1363 1945 1.492993 AAGGCTTGGAGGAGGTGGAC 61.493 60.000 0.00 0.00 0.00 4.02
1549 2134 6.012596 TCACCCCACATATGTAATCTGCATAT 60.013 38.462 8.32 0.00 39.36 1.78
1552 2137 3.457749 TCACCCCACATATGTAATCTGCA 59.542 43.478 8.32 0.00 0.00 4.41
1553 2138 4.085357 TCACCCCACATATGTAATCTGC 57.915 45.455 8.32 0.00 0.00 4.26
1554 2139 5.065914 CCTTCACCCCACATATGTAATCTG 58.934 45.833 8.32 2.55 0.00 2.90
1702 2294 0.882042 AATGACGCATCGGCCATCTC 60.882 55.000 2.24 0.00 31.60 2.75
1709 2301 2.518949 CTTTGGAAAATGACGCATCGG 58.481 47.619 0.00 0.00 0.00 4.18
1758 2350 2.418368 AACTATGAAATGCGGCCTCA 57.582 45.000 0.00 0.00 0.00 3.86
1814 2406 3.037549 ACTTTCAATGGCCTGGAACAAA 58.962 40.909 3.32 0.00 38.70 2.83
1885 2477 2.662866 ACTGCTATTAGGACCACGCTA 58.337 47.619 0.00 0.00 0.00 4.26
1889 2481 4.572389 CACATGAACTGCTATTAGGACCAC 59.428 45.833 0.00 0.00 0.00 4.16
1900 2492 7.255139 GGTTAAGAAAAGTACACATGAACTGCT 60.255 37.037 0.00 0.00 0.00 4.24
1952 2557 8.787852 AGACAAATTTCTTCTAGGAAACACATC 58.212 33.333 0.00 0.00 37.91 3.06
2044 2653 1.812571 ACTGTGTCAATTCCATTCGCC 59.187 47.619 0.00 0.00 0.00 5.54
2052 2661 6.706270 TCCAAAGAGACTAACTGTGTCAATTC 59.294 38.462 1.77 0.00 40.94 2.17
2141 2750 7.092079 TGGATACACAGATTGCAAGAAAAATG 58.908 34.615 4.94 1.10 46.17 2.32
2169 2778 5.363292 TGGCAATTGGCACAGATACATATTT 59.637 36.000 29.00 0.00 46.12 1.40
2216 2825 4.545208 TCACGACATGGTTGAATCCTTA 57.455 40.909 0.00 0.00 0.00 2.69
2221 2830 5.125257 TGCAAATATCACGACATGGTTGAAT 59.875 36.000 0.00 0.00 0.00 2.57
2224 2833 4.097714 GTGCAAATATCACGACATGGTTG 58.902 43.478 0.00 0.00 0.00 3.77
2227 2836 2.945008 AGGTGCAAATATCACGACATGG 59.055 45.455 0.00 0.00 35.39 3.66
2233 2842 3.436704 ACAGAACAGGTGCAAATATCACG 59.563 43.478 0.00 0.00 35.39 4.35
2247 2856 1.069703 CATTGTGTGCGGACAGAACAG 60.070 52.381 21.47 13.33 39.57 3.16
2257 2866 5.636965 TGGAAATTAAAATCCATTGTGTGCG 59.363 36.000 8.17 0.00 40.74 5.34
2260 2869 7.040062 TCGACTGGAAATTAAAATCCATTGTGT 60.040 33.333 11.72 7.36 44.41 3.72
2263 2872 7.489113 CCTTCGACTGGAAATTAAAATCCATTG 59.511 37.037 11.72 5.66 44.41 2.82
2274 2883 3.581332 TGGTCTACCTTCGACTGGAAATT 59.419 43.478 10.28 0.00 36.82 1.82
2315 2924 6.313905 CGTAGAACAGGAGCAGTATGATTTTT 59.686 38.462 0.00 0.00 39.69 1.94
2316 2925 5.812642 CGTAGAACAGGAGCAGTATGATTTT 59.187 40.000 0.00 0.00 39.69 1.82
2317 2926 5.127194 TCGTAGAACAGGAGCAGTATGATTT 59.873 40.000 0.00 0.00 39.69 2.17
2325 2942 9.862371 AATATATTAATCGTAGAACAGGAGCAG 57.138 33.333 0.00 0.00 43.58 4.24
2357 2976 1.206072 GCTTGTCTGCAGCAGAACG 59.794 57.895 27.04 17.63 42.46 3.95
2646 3265 8.204836 ACAGATTGACCTATGGACTGTTTATAC 58.795 37.037 0.00 0.00 34.21 1.47
2705 3327 4.516698 TCCTCAAGCTCAAACAAATCAGAC 59.483 41.667 0.00 0.00 0.00 3.51
2710 3332 5.302568 TGAACATCCTCAAGCTCAAACAAAT 59.697 36.000 0.00 0.00 0.00 2.32
2852 3475 7.600231 TCGGTATGTATAAACTGGGACATAA 57.400 36.000 0.00 0.00 36.73 1.90
2854 3477 6.681729 ATCGGTATGTATAAACTGGGACAT 57.318 37.500 0.00 0.00 38.20 3.06
2874 3497 4.481930 TCAGTTTTGCCAAACAGTATCG 57.518 40.909 15.08 0.00 44.32 2.92
2896 3519 3.383698 ACGGAAATCTCTCCTCTACCA 57.616 47.619 0.00 0.00 32.82 3.25
2973 3596 6.228258 ATTTCACCACGAAAGTAGCTTAGAA 58.772 36.000 0.00 0.00 46.57 2.10
3002 3653 6.305693 ACTTCTAAAGTTGCACAAGCTAAG 57.694 37.500 0.00 0.00 39.04 2.18
3019 3670 8.896722 ACAGGTAGATAAAGGAGAAACTTCTA 57.103 34.615 0.00 0.00 37.73 2.10
3038 3689 3.000684 AGCTCGACATCTGTACAGGTA 57.999 47.619 22.48 4.80 0.00 3.08
3053 3704 5.612709 GCACTAAGTTACAAAGTCAAGCTCG 60.613 44.000 0.00 0.00 0.00 5.03
3093 3744 2.033448 TTGCACGCCAACCCTAGG 59.967 61.111 0.06 0.06 0.00 3.02
3180 3832 9.720769 AATACTTTCTTTCGAACCTATTCTCAA 57.279 29.630 0.00 0.00 32.12 3.02
3519 4171 9.736414 AAGCATGCAGAATAAGATTCTATACAT 57.264 29.630 21.98 4.26 0.00 2.29
3542 4194 3.127721 GCAAGAACTGATACCTGGAAAGC 59.872 47.826 0.00 0.00 0.00 3.51
3577 4229 4.934001 CAGCTTCTGAATGTCTTTAGAGCA 59.066 41.667 0.00 0.00 32.44 4.26
3601 4253 0.813184 AACTGGATGGCAGCAAATCG 59.187 50.000 4.64 0.00 0.00 3.34
3654 4306 3.667497 TGACTGACTAAACAGGCTCAG 57.333 47.619 0.00 0.00 45.26 3.35
3937 4633 5.572896 GCAAATGTTATAACTTGACCACTGC 59.427 40.000 16.33 9.49 0.00 4.40
3944 4643 5.703592 ACAGTCGGCAAATGTTATAACTTGA 59.296 36.000 16.33 1.60 0.00 3.02
4279 4978 8.006564 AGGCAAGATAATGAATTCCCTATTTCA 58.993 33.333 2.27 0.00 0.00 2.69
4293 4996 3.321497 GTCTAGCGGAGGCAAGATAATG 58.679 50.000 0.00 0.00 43.41 1.90
4336 5041 5.745294 GCATTTAGTTAGTGTTCCATGCATG 59.255 40.000 20.19 20.19 36.59 4.06
4733 5475 4.758688 CACTATGTGCCATAACAGACTGA 58.241 43.478 10.08 0.00 32.52 3.41
4792 5538 1.401905 CGATACAGGCAGGCCTTTTTC 59.598 52.381 10.79 8.37 45.70 2.29
4879 5626 2.615391 TCACATCTGTAACTCCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
4880 5627 3.535561 CATCACATCTGTAACTCCCCAC 58.464 50.000 0.00 0.00 0.00 4.61
4881 5628 2.505407 CCATCACATCTGTAACTCCCCA 59.495 50.000 0.00 0.00 0.00 4.96
4896 5643 1.234821 TTGTGCTTTCGGTCCATCAC 58.765 50.000 0.00 0.00 0.00 3.06
4904 5651 2.154462 AGTCTCCAATTGTGCTTTCGG 58.846 47.619 4.43 0.00 0.00 4.30
4907 5654 6.463995 TTTACAAGTCTCCAATTGTGCTTT 57.536 33.333 4.43 0.00 39.83 3.51
4911 5658 8.594687 CAAAAGTTTTACAAGTCTCCAATTGTG 58.405 33.333 4.43 0.00 39.83 3.33
4999 5746 7.419518 GCCTAAGCCCATCACATATATGTAGAT 60.420 40.741 17.86 17.80 39.39 1.98
5001 5748 6.051717 GCCTAAGCCCATCACATATATGTAG 58.948 44.000 17.86 12.26 39.39 2.74
5002 5749 5.989477 GCCTAAGCCCATCACATATATGTA 58.011 41.667 17.86 7.59 39.39 2.29
5003 5750 4.848357 GCCTAAGCCCATCACATATATGT 58.152 43.478 12.75 12.75 42.84 2.29
5018 5768 2.019984 CCAAGACAAGATGGCCTAAGC 58.980 52.381 3.32 0.00 38.76 3.09
5022 5772 0.329596 GGACCAAGACAAGATGGCCT 59.670 55.000 3.32 0.00 40.51 5.19
5029 5779 1.002544 GGAGTCCAGGACCAAGACAAG 59.997 57.143 16.72 0.00 32.18 3.16
5034 5784 1.557269 CCCAGGAGTCCAGGACCAAG 61.557 65.000 21.88 0.78 31.24 3.61
5045 5795 3.626924 GTGGACGTGCCCAGGAGT 61.627 66.667 4.04 0.00 36.78 3.85
5047 5797 2.847234 AAGTGGACGTGCCCAGGA 60.847 61.111 4.04 0.00 36.78 3.86
5049 5799 2.669569 CCAAGTGGACGTGCCCAG 60.670 66.667 4.04 0.00 36.78 4.45
5051 5801 3.248446 TAGCCAAGTGGACGTGCCC 62.248 63.158 4.04 0.00 37.39 5.36
5052 5802 2.033194 GTAGCCAAGTGGACGTGCC 61.033 63.158 4.04 0.43 37.39 5.01
5054 5804 0.670546 CCTGTAGCCAAGTGGACGTG 60.671 60.000 0.18 0.00 37.39 4.49
5055 5805 1.119574 ACCTGTAGCCAAGTGGACGT 61.120 55.000 0.18 0.00 37.39 4.34
5057 5807 3.197983 AGATTACCTGTAGCCAAGTGGAC 59.802 47.826 0.18 0.00 37.39 4.02
5081 5883 5.807011 GGCAATTCTGTCATACAAAATCCAC 59.193 40.000 0.00 0.00 0.00 4.02
5103 5909 1.000396 AACTCCCCAATGCTCTGGC 60.000 57.895 0.00 0.00 34.88 4.85
5104 5910 0.329261 TGAACTCCCCAATGCTCTGG 59.671 55.000 0.00 0.00 36.10 3.86
5126 5932 8.832735 ACATTTAGGAACAGAGGGAGTATAAAA 58.167 33.333 0.00 0.00 0.00 1.52
5128 5934 7.989947 ACATTTAGGAACAGAGGGAGTATAA 57.010 36.000 0.00 0.00 0.00 0.98
5129 5935 9.144298 CTTACATTTAGGAACAGAGGGAGTATA 57.856 37.037 0.00 0.00 0.00 1.47
5130 5936 7.624077 ACTTACATTTAGGAACAGAGGGAGTAT 59.376 37.037 0.00 0.00 0.00 2.12
5132 5938 5.785940 ACTTACATTTAGGAACAGAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
5133 5939 6.155393 AGACTTACATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
5134 5940 6.023603 AGACTTACATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
5135 5941 6.301169 AGACTTACATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
5136 5942 8.622948 AAAAGACTTACATTTAGGAACAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
5150 5956 9.924650 GTAGTGGAATCTCTAAAAAGACTTACA 57.075 33.333 0.00 0.00 0.00 2.41
5151 5957 9.924650 TGTAGTGGAATCTCTAAAAAGACTTAC 57.075 33.333 0.00 0.00 0.00 2.34
5153 5959 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
5154 5960 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
5155 5961 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
5162 5968 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
5163 5969 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
5164 5970 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
5165 5971 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
5166 5972 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
5167 5973 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
5168 5974 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
5169 5975 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
5170 5976 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
5197 6003 9.731819 GTGAATCTACACTCGAAAATATGTCTA 57.268 33.333 0.00 0.00 37.73 2.59
5198 6004 8.470805 AGTGAATCTACACTCGAAAATATGTCT 58.529 33.333 0.00 0.00 46.36 3.41
5199 6005 8.635877 AGTGAATCTACACTCGAAAATATGTC 57.364 34.615 0.00 0.00 46.36 3.06
5212 6018 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
5213 6019 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
5214 6020 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
5215 6021 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
5216 6022 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
5217 6023 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
5218 6024 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
5219 6025 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
5220 6026 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
5221 6027 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
5222 6028 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
5223 6029 6.057533 TGGACTACATATGGAGCAAAATGAG 58.942 40.000 15.30 0.00 0.00 2.90
5224 6030 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
5225 6031 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
5226 6032 7.749666 ACTATGGACTACATATGGAGCAAAAT 58.250 34.615 15.30 6.56 41.07 1.82
5227 6033 7.136822 ACTATGGACTACATATGGAGCAAAA 57.863 36.000 15.30 0.00 41.07 2.44
5228 6034 6.747414 ACTATGGACTACATATGGAGCAAA 57.253 37.500 15.30 0.66 41.07 3.68
5229 6035 7.238710 TCTACTATGGACTACATATGGAGCAA 58.761 38.462 15.30 1.98 41.07 3.91
5230 6036 6.790319 TCTACTATGGACTACATATGGAGCA 58.210 40.000 15.30 6.30 41.07 4.26
5231 6037 7.704578 TTCTACTATGGACTACATATGGAGC 57.295 40.000 15.30 7.75 41.07 4.70
5232 6038 9.693739 AGATTCTACTATGGACTACATATGGAG 57.306 37.037 13.77 13.77 41.07 3.86
5233 6039 9.688091 GAGATTCTACTATGGACTACATATGGA 57.312 37.037 7.80 0.00 41.07 3.41
5234 6040 9.693739 AGAGATTCTACTATGGACTACATATGG 57.306 37.037 7.80 0.00 41.07 2.74
5262 6068 8.957466 CCCTCGATTCCTAAATTTAAGTCTTTT 58.043 33.333 0.00 0.00 0.00 2.27
5263 6069 8.326529 TCCCTCGATTCCTAAATTTAAGTCTTT 58.673 33.333 0.00 0.00 0.00 2.52
5264 6070 7.858498 TCCCTCGATTCCTAAATTTAAGTCTT 58.142 34.615 0.00 0.00 0.00 3.01
5265 6071 7.125963 ACTCCCTCGATTCCTAAATTTAAGTCT 59.874 37.037 0.00 0.00 0.00 3.24
5266 6072 7.273712 ACTCCCTCGATTCCTAAATTTAAGTC 58.726 38.462 0.00 0.00 0.00 3.01
5267 6073 7.196637 ACTCCCTCGATTCCTAAATTTAAGT 57.803 36.000 0.00 0.00 0.00 2.24
5274 6080 9.763837 TCATTATATACTCCCTCGATTCCTAAA 57.236 33.333 0.00 0.00 0.00 1.85
5275 6081 9.763837 TTCATTATATACTCCCTCGATTCCTAA 57.236 33.333 0.00 0.00 0.00 2.69
5276 6082 9.763837 TTTCATTATATACTCCCTCGATTCCTA 57.236 33.333 0.00 0.00 0.00 2.94
5277 6083 8.666129 TTTCATTATATACTCCCTCGATTCCT 57.334 34.615 0.00 0.00 0.00 3.36
5278 6084 9.720769 TTTTTCATTATATACTCCCTCGATTCC 57.279 33.333 0.00 0.00 0.00 3.01
5287 6093 9.827411 GCGGATTTCTTTTTCATTATATACTCC 57.173 33.333 0.00 0.00 0.00 3.85
5290 6096 9.612620 CCTGCGGATTTCTTTTTCATTATATAC 57.387 33.333 0.00 0.00 0.00 1.47
5291 6097 8.296713 GCCTGCGGATTTCTTTTTCATTATATA 58.703 33.333 0.00 0.00 0.00 0.86
5292 6098 7.014615 AGCCTGCGGATTTCTTTTTCATTATAT 59.985 33.333 0.00 0.00 0.00 0.86
5293 6099 6.321181 AGCCTGCGGATTTCTTTTTCATTATA 59.679 34.615 0.00 0.00 0.00 0.98
5294 6100 5.127682 AGCCTGCGGATTTCTTTTTCATTAT 59.872 36.000 0.00 0.00 0.00 1.28
5480 6308 0.521291 TATCACAGCGCTTTTGGCAC 59.479 50.000 7.50 0.00 41.91 5.01
5490 6318 6.589139 ACATACATCATGAGATTATCACAGCG 59.411 38.462 0.09 0.00 41.91 5.18
5520 6348 4.263209 CGACTGACATGAACGAGTAATGTC 59.737 45.833 17.82 17.82 46.73 3.06
5553 6415 5.414765 TGACACGATAGATCACACTAGTTGT 59.585 40.000 0.00 0.00 38.55 3.32
5578 6440 4.373527 GCCCCAAAATGTAAGACGTTTTT 58.626 39.130 6.77 0.00 42.72 1.94
5583 6445 0.450184 CGGCCCCAAAATGTAAGACG 59.550 55.000 0.00 0.00 0.00 4.18
5586 6448 1.102978 CCTCGGCCCCAAAATGTAAG 58.897 55.000 0.00 0.00 0.00 2.34
5587 6449 0.323908 CCCTCGGCCCCAAAATGTAA 60.324 55.000 0.00 0.00 0.00 2.41
5590 6452 1.754234 CTCCCTCGGCCCCAAAATG 60.754 63.158 0.00 0.00 0.00 2.32
5593 6455 1.307517 ATACTCCCTCGGCCCCAAA 60.308 57.895 0.00 0.00 0.00 3.28
5595 6457 2.122989 GATACTCCCTCGGCCCCA 60.123 66.667 0.00 0.00 0.00 4.96
5596 6458 3.303928 CGATACTCCCTCGGCCCC 61.304 72.222 0.00 0.00 32.58 5.80
5601 6463 2.954318 TCTTTTACCCGATACTCCCTCG 59.046 50.000 0.00 0.00 35.92 4.63
5602 6464 5.349061 TTTCTTTTACCCGATACTCCCTC 57.651 43.478 0.00 0.00 0.00 4.30
5603 6465 5.250082 AGTTTTCTTTTACCCGATACTCCCT 59.750 40.000 0.00 0.00 0.00 4.20
5604 6466 5.494724 AGTTTTCTTTTACCCGATACTCCC 58.505 41.667 0.00 0.00 0.00 4.30
5605 6467 7.326454 ACTAGTTTTCTTTTACCCGATACTCC 58.674 38.462 0.00 0.00 0.00 3.85
5606 6468 9.513727 CTACTAGTTTTCTTTTACCCGATACTC 57.486 37.037 0.00 0.00 0.00 2.59
5608 6470 9.080915 CACTACTAGTTTTCTTTTACCCGATAC 57.919 37.037 0.00 0.00 0.00 2.24
5611 6473 6.925165 CACACTACTAGTTTTCTTTTACCCGA 59.075 38.462 0.00 0.00 0.00 5.14
5612 6474 6.925165 TCACACTACTAGTTTTCTTTTACCCG 59.075 38.462 0.00 0.00 0.00 5.28
5613 6475 8.843885 ATCACACTACTAGTTTTCTTTTACCC 57.156 34.615 0.00 0.00 0.00 3.69
5639 6548 8.827177 TCGCGAAAAATTACAAGGATAGATAT 57.173 30.769 6.20 0.00 0.00 1.63
5692 6869 2.066262 CCGGACGCGCATTATTATTCT 58.934 47.619 5.73 0.00 0.00 2.40
5695 6872 1.296056 GGCCGGACGCGCATTATTAT 61.296 55.000 5.05 0.00 38.94 1.28
5743 6942 1.082886 GACGGACGGACGATCGATC 60.083 63.158 24.34 15.68 37.61 3.69
5744 6943 2.541120 GGACGGACGGACGATCGAT 61.541 63.158 24.34 5.96 37.61 3.59
5747 6946 3.446175 GACGGACGGACGGACGATC 62.446 68.421 15.02 7.04 38.39 3.69
5748 6947 3.503363 GACGGACGGACGGACGAT 61.503 66.667 15.02 2.50 38.39 3.73
5822 7073 4.200283 CCGCGAGAGACCTGGCTC 62.200 72.222 8.23 9.30 41.27 4.70
5888 7139 0.389948 CTCTGTTACCTCGGTGTGCC 60.390 60.000 0.00 0.00 0.00 5.01
5889 7140 0.389948 CCTCTGTTACCTCGGTGTGC 60.390 60.000 0.00 0.00 0.00 4.57
5890 7141 0.246635 CCCTCTGTTACCTCGGTGTG 59.753 60.000 0.00 0.00 0.00 3.82
5891 7142 0.113776 TCCCTCTGTTACCTCGGTGT 59.886 55.000 0.00 0.00 0.00 4.16
5892 7143 0.818296 CTCCCTCTGTTACCTCGGTG 59.182 60.000 0.00 0.00 0.00 4.94
5893 7144 0.324460 CCTCCCTCTGTTACCTCGGT 60.324 60.000 0.00 0.00 0.00 4.69
5894 7145 1.043673 CCCTCCCTCTGTTACCTCGG 61.044 65.000 0.00 0.00 0.00 4.63
5895 7146 0.033405 TCCCTCCCTCTGTTACCTCG 60.033 60.000 0.00 0.00 0.00 4.63
5900 7151 2.000803 TGTCTCTCCCTCCCTCTGTTA 58.999 52.381 0.00 0.00 0.00 2.41
5912 7163 2.368221 CCAGATCCCTCATTGTCTCTCC 59.632 54.545 0.00 0.00 0.00 3.71
5913 7164 3.303938 TCCAGATCCCTCATTGTCTCTC 58.696 50.000 0.00 0.00 0.00 3.20
5914 7165 3.307506 CTCCAGATCCCTCATTGTCTCT 58.692 50.000 0.00 0.00 0.00 3.10
5920 7171 2.885388 ACTCCTCCAGATCCCTCATT 57.115 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.