Multiple sequence alignment - TraesCS5B01G508600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G508600 chr5B 100.000 6293 0 0 1 6293 673692987 673686695 0.000000e+00 11622.0
1 TraesCS5B01G508600 chr5B 85.336 1739 181 33 2545 4211 673937853 673936117 0.000000e+00 1731.0
2 TraesCS5B01G508600 chr5B 100.000 618 0 0 6670 7287 673686318 673685701 0.000000e+00 1142.0
3 TraesCS5B01G508600 chr5B 87.899 909 106 4 3068 3973 597233416 597234323 0.000000e+00 1066.0
4 TraesCS5B01G508600 chr5B 81.277 1143 166 29 1423 2526 673938967 673937834 0.000000e+00 881.0
5 TraesCS5B01G508600 chr5B 90.181 662 44 7 4458 5101 673764988 673764330 0.000000e+00 843.0
6 TraesCS5B01G508600 chr5B 92.166 434 30 2 3778 4211 673765531 673765102 1.740000e-170 610.0
7 TraesCS5B01G508600 chr5B 81.831 732 97 19 1113 1821 597232692 597233410 3.790000e-162 582.0
8 TraesCS5B01G508600 chr5B 88.660 388 23 9 5090 5474 673764290 673763921 3.100000e-123 453.0
9 TraesCS5B01G508600 chr5B 89.213 343 33 3 4749 5090 673935303 673934964 6.760000e-115 425.0
10 TraesCS5B01G508600 chr5B 81.865 386 54 6 5826 6211 673763882 673763513 1.970000e-80 311.0
11 TraesCS5B01G508600 chr5B 85.768 267 26 5 6810 7064 673763274 673763008 9.320000e-69 272.0
12 TraesCS5B01G508600 chr5B 93.878 49 1 2 4382 4428 82475839 82475887 1.010000e-08 73.1
13 TraesCS5B01G508600 chr5B 82.759 87 5 1 4209 4285 306447511 306447597 1.310000e-07 69.4
14 TraesCS5B01G508600 chr5B 97.059 34 1 0 1 34 542896711 542896678 2.840000e-04 58.4
15 TraesCS5B01G508600 chr4A 96.854 3783 63 19 2545 6293 638215037 638218797 0.000000e+00 6276.0
16 TraesCS5B01G508600 chr4A 89.631 2247 155 46 344 2526 638212824 638215056 0.000000e+00 2787.0
17 TraesCS5B01G508600 chr4A 81.677 1157 156 28 1408 2522 638170264 638171406 0.000000e+00 911.0
18 TraesCS5B01G508600 chr4A 86.985 753 85 8 2542 3282 638171387 638172138 0.000000e+00 835.0
19 TraesCS5B01G508600 chr4A 84.531 821 74 19 3431 4200 638172433 638173251 0.000000e+00 763.0
20 TraesCS5B01G508600 chr4A 88.921 343 34 3 4749 5090 638174092 638174431 3.140000e-113 420.0
21 TraesCS5B01G508600 chr4A 89.560 182 15 4 4467 4648 638173517 638173694 2.050000e-55 228.0
22 TraesCS5B01G508600 chr5D 96.147 3556 97 16 2757 6293 533643164 533639630 0.000000e+00 5771.0
23 TraesCS5B01G508600 chr5D 93.793 1595 69 10 953 2526 533645201 533643616 0.000000e+00 2370.0
24 TraesCS5B01G508600 chr5D 88.075 1610 139 31 953 2526 533666498 533664906 0.000000e+00 1860.0
25 TraesCS5B01G508600 chr5D 89.077 888 84 10 2545 3428 533664925 533664047 0.000000e+00 1090.0
26 TraesCS5B01G508600 chr5D 87.470 838 65 20 4283 5101 533659927 533659111 0.000000e+00 929.0
27 TraesCS5B01G508600 chr5D 81.747 1145 159 22 1423 2526 533868294 533867159 0.000000e+00 911.0
28 TraesCS5B01G508600 chr5D 86.853 753 85 9 2545 3285 533867178 533866428 0.000000e+00 830.0
29 TraesCS5B01G508600 chr5D 93.973 448 17 2 6810 7256 533639406 533638968 0.000000e+00 669.0
30 TraesCS5B01G508600 chr5D 91.935 434 31 2 3778 4211 533660354 533659925 8.090000e-169 604.0
31 TraesCS5B01G508600 chr5D 84.083 578 55 18 344 897 533645880 533645316 2.330000e-144 523.0
32 TraesCS5B01G508600 chr5D 89.175 388 21 9 5090 5474 533659086 533658717 1.430000e-126 464.0
33 TraesCS5B01G508600 chr5D 89.796 343 30 4 4749 5090 533864505 533864167 1.120000e-117 435.0
34 TraesCS5B01G508600 chr5D 88.785 321 33 1 30 350 120107562 120107245 2.460000e-104 390.0
35 TraesCS5B01G508600 chr5D 85.086 409 31 15 3832 4211 533865727 533865320 2.460000e-104 390.0
36 TraesCS5B01G508600 chr5D 97.674 215 5 0 2545 2759 533643635 533643421 3.210000e-98 370.0
37 TraesCS5B01G508600 chr5D 82.902 386 53 6 5826 6211 533658678 533658306 1.170000e-87 335.0
38 TraesCS5B01G508600 chr5D 85.000 320 47 1 32 351 557382328 557382646 2.540000e-84 324.0
39 TraesCS5B01G508600 chr5D 84.472 322 49 1 30 351 557393054 557393374 4.240000e-82 316.0
40 TraesCS5B01G508600 chr5D 88.462 182 17 4 4467 4648 533865074 533864897 4.430000e-52 217.0
41 TraesCS5B01G508600 chr5D 94.030 134 7 1 6678 6810 533639609 533639476 1.240000e-47 202.0
42 TraesCS5B01G508600 chr5D 95.455 44 2 0 4209 4252 270222345 270222388 3.650000e-08 71.3
43 TraesCS5B01G508600 chr6D 89.054 1416 103 23 4283 5662 352906205 352904806 0.000000e+00 1709.0
44 TraesCS5B01G508600 chr6D 91.454 1252 84 11 2972 4211 352907443 352906203 0.000000e+00 1698.0
45 TraesCS5B01G508600 chr6D 87.850 963 106 7 3252 4211 406560116 406559162 0.000000e+00 1120.0
46 TraesCS5B01G508600 chr6D 88.763 792 82 5 1739 2526 352908672 352907884 0.000000e+00 963.0
47 TraesCS5B01G508600 chr6D 87.333 450 53 3 1281 1726 352909670 352909221 5.040000e-141 512.0
48 TraesCS5B01G508600 chr6D 90.859 361 33 0 2545 2905 352907903 352907543 1.100000e-132 484.0
49 TraesCS5B01G508600 chr6D 84.689 418 47 12 5810 6224 352904862 352904459 1.140000e-107 401.0
50 TraesCS5B01G508600 chr4B 85.188 1411 147 41 2852 4211 14393728 14395127 0.000000e+00 1391.0
51 TraesCS5B01G508600 chr4B 82.292 1152 151 35 1415 2526 14392144 14393282 0.000000e+00 948.0
52 TraesCS5B01G508600 chr4B 86.905 168 18 4 4482 4648 14395259 14395423 1.250000e-42 185.0
53 TraesCS5B01G508600 chr4B 100.000 33 0 0 1 33 96882636 96882604 2.200000e-05 62.1
54 TraesCS5B01G508600 chr4B 97.059 34 0 1 1 34 216650277 216650309 1.000000e-03 56.5
55 TraesCS5B01G508600 chr4B 97.059 34 0 1 1 34 297992723 297992755 1.000000e-03 56.5
56 TraesCS5B01G508600 chr6B 88.009 909 105 4 3068 3973 504290535 504291442 0.000000e+00 1072.0
57 TraesCS5B01G508600 chr6B 81.694 732 98 19 1113 1821 504289811 504290529 1.760000e-160 577.0
58 TraesCS5B01G508600 chr6B 82.044 362 37 19 4283 4644 687250701 687251034 4.300000e-72 283.0
59 TraesCS5B01G508600 chr6B 90.385 52 3 2 4375 4424 143668670 143668619 4.720000e-07 67.6
60 TraesCS5B01G508600 chr3B 88.009 909 105 4 3068 3973 677306442 677305535 0.000000e+00 1072.0
61 TraesCS5B01G508600 chr3B 87.789 909 106 5 3068 3973 144789954 144790860 0.000000e+00 1059.0
62 TraesCS5B01G508600 chr3B 81.831 732 97 19 1113 1821 144789230 144789948 3.790000e-162 582.0
63 TraesCS5B01G508600 chr3B 81.831 732 97 19 1113 1821 677307166 677306448 3.790000e-162 582.0
64 TraesCS5B01G508600 chr3B 80.387 362 44 13 4283 4644 7080576 7080910 4.360000e-62 250.0
65 TraesCS5B01G508600 chr7A 87.445 677 80 5 3538 4211 94704707 94704033 0.000000e+00 774.0
66 TraesCS5B01G508600 chr7A 81.492 362 39 14 4283 4644 82160423 82160090 9.320000e-69 272.0
67 TraesCS5B01G508600 chr7A 80.110 362 45 13 4283 4644 94704035 94703701 2.030000e-60 244.0
68 TraesCS5B01G508600 chr7A 80.870 230 33 6 5964 6192 680390402 680390621 3.500000e-38 171.0
69 TraesCS5B01G508600 chr7A 90.196 51 5 0 4202 4252 720848302 720848352 4.720000e-07 67.6
70 TraesCS5B01G508600 chr7D 88.785 321 34 1 30 350 577925056 577924738 6.850000e-105 392.0
71 TraesCS5B01G508600 chr7D 80.000 315 55 5 5877 6190 376955374 376955067 7.360000e-55 226.0
72 TraesCS5B01G508600 chr7D 79.062 320 48 11 5877 6192 588790185 588789881 1.240000e-47 202.0
73 TraesCS5B01G508600 chr7D 94.624 93 5 0 5092 5184 199042547 199042455 2.120000e-30 145.0
74 TraesCS5B01G508600 chr7B 86.916 321 42 0 30 350 284423632 284423312 1.930000e-95 361.0
75 TraesCS5B01G508600 chr7B 81.492 362 39 14 4283 4644 606781811 606781478 9.320000e-69 272.0
76 TraesCS5B01G508600 chr7B 97.436 39 1 0 4246 4284 245993897 245993935 4.720000e-07 67.6
77 TraesCS5B01G508600 chr7B 97.059 34 1 0 1 34 535087103 535087136 2.840000e-04 58.4
78 TraesCS5B01G508600 chr7B 94.595 37 1 1 1 36 169536717 169536681 1.000000e-03 56.5
79 TraesCS5B01G508600 chr2D 86.646 322 40 1 30 351 106642850 106643168 3.230000e-93 353.0
80 TraesCS5B01G508600 chr2D 86.025 322 45 0 30 351 81051843 81051522 5.410000e-91 346.0
81 TraesCS5B01G508600 chr2D 85.623 313 45 0 32 344 81050019 81049707 5.450000e-86 329.0
82 TraesCS5B01G508600 chr2D 93.750 48 1 2 4379 4424 565934918 565934871 3.650000e-08 71.3
83 TraesCS5B01G508600 chr2D 93.182 44 3 0 4208 4251 416858269 416858312 1.700000e-06 65.8
84 TraesCS5B01G508600 chr2D 90.698 43 4 0 4209 4251 582545857 582545815 2.840000e-04 58.4
85 TraesCS5B01G508600 chr2B 86.068 323 43 2 30 351 132815846 132815525 5.410000e-91 346.0
86 TraesCS5B01G508600 chr2B 94.595 37 1 1 1 37 170373051 170373086 1.000000e-03 56.5
87 TraesCS5B01G508600 chr3D 81.423 253 37 6 4659 4905 554070994 554070746 1.600000e-46 198.0
88 TraesCS5B01G508600 chr3D 93.617 94 6 0 5091 5184 45759759 45759666 2.740000e-29 141.0
89 TraesCS5B01G508600 chr3D 92.857 56 2 2 4378 4431 175543173 175543118 6.060000e-11 80.5
90 TraesCS5B01G508600 chr5A 93.684 95 6 0 5090 5184 244758073 244757979 7.620000e-30 143.0
91 TraesCS5B01G508600 chr5A 83.908 87 4 1 4209 4285 359044347 359044433 2.820000e-09 75.0
92 TraesCS5B01G508600 chr5A 91.489 47 0 3 4207 4251 7015124 7015168 2.200000e-05 62.1
93 TraesCS5B01G508600 chr3A 93.617 94 6 0 5091 5184 57281468 57281375 2.740000e-29 141.0
94 TraesCS5B01G508600 chr1B 97.727 44 0 1 4382 4424 386519898 386519941 2.820000e-09 75.0
95 TraesCS5B01G508600 chr1B 100.000 32 0 0 1 32 456313542 456313573 7.900000e-05 60.2
96 TraesCS5B01G508600 chrUn 97.674 43 0 1 4389 4430 55726298 55726256 1.010000e-08 73.1
97 TraesCS5B01G508600 chr4D 95.652 46 0 2 4379 4422 486185387 486185342 1.010000e-08 73.1
98 TraesCS5B01G508600 chr1D 97.059 34 0 1 1 34 210284064 210284032 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G508600 chr5B 673685701 673692987 7286 True 6382.000000 11622 100.000000 1 7287 2 chr5B.!!$R2 7286
1 TraesCS5B01G508600 chr5B 673934964 673938967 4003 True 1012.333333 1731 85.275333 1423 5090 3 chr5B.!!$R4 3667
2 TraesCS5B01G508600 chr5B 597232692 597234323 1631 False 824.000000 1066 84.865000 1113 3973 2 chr5B.!!$F3 2860
3 TraesCS5B01G508600 chr5B 673763008 673765531 2523 True 497.800000 843 87.728000 3778 7064 5 chr5B.!!$R3 3286
4 TraesCS5B01G508600 chr4A 638212824 638218797 5973 False 4531.500000 6276 93.242500 344 6293 2 chr4A.!!$F2 5949
5 TraesCS5B01G508600 chr4A 638170264 638174431 4167 False 631.400000 911 86.334800 1408 5090 5 chr4A.!!$F1 3682
6 TraesCS5B01G508600 chr5D 533638968 533645880 6912 True 1650.833333 5771 93.283333 344 7256 6 chr5D.!!$R2 6912
7 TraesCS5B01G508600 chr5D 533658306 533666498 8192 True 880.333333 1860 88.105667 953 6211 6 chr5D.!!$R3 5258
8 TraesCS5B01G508600 chr5D 533864167 533868294 4127 True 556.600000 911 86.388800 1423 5090 5 chr5D.!!$R4 3667
9 TraesCS5B01G508600 chr6D 406559162 406560116 954 True 1120.000000 1120 87.850000 3252 4211 1 chr6D.!!$R1 959
10 TraesCS5B01G508600 chr6D 352904459 352909670 5211 True 961.166667 1709 88.692000 1281 6224 6 chr6D.!!$R2 4943
11 TraesCS5B01G508600 chr4B 14392144 14395423 3279 False 841.333333 1391 84.795000 1415 4648 3 chr4B.!!$F3 3233
12 TraesCS5B01G508600 chr6B 504289811 504291442 1631 False 824.500000 1072 84.851500 1113 3973 2 chr6B.!!$F2 2860
13 TraesCS5B01G508600 chr3B 677305535 677307166 1631 True 827.000000 1072 84.920000 1113 3973 2 chr3B.!!$R1 2860
14 TraesCS5B01G508600 chr3B 144789230 144790860 1630 False 820.500000 1059 84.810000 1113 3973 2 chr3B.!!$F2 2860
15 TraesCS5B01G508600 chr7A 94703701 94704707 1006 True 509.000000 774 83.777500 3538 4644 2 chr7A.!!$R2 1106
16 TraesCS5B01G508600 chr2D 81049707 81051843 2136 True 337.500000 346 85.824000 30 351 2 chr2D.!!$R3 321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.027324 CCCTCTAGTCGACGTAACGC 59.973 60.000 10.46 0.00 0.00 4.84 F
211 212 0.037605 GTGTCGAGGGATTGTCCGTT 60.038 55.000 0.00 0.00 37.43 4.44 F
212 213 0.037697 TGTCGAGGGATTGTCCGTTG 60.038 55.000 0.00 0.49 37.43 4.10 F
288 289 0.249398 ACCGGTGGAATTCGAAGGAG 59.751 55.000 6.12 0.71 0.00 3.69 F
931 982 0.260230 TGTTTGCTCCCTTTCCACCA 59.740 50.000 0.00 0.00 0.00 4.17 F
944 1029 0.764369 TCCACCACACTGCCTCTTCT 60.764 55.000 0.00 0.00 0.00 2.85 F
2519 3470 1.549203 CCATAGGTGGCTGCAGTTTT 58.451 50.000 16.64 0.00 39.01 2.43 F
2922 4455 1.466856 TACTGAACGGACATACGCCT 58.533 50.000 0.00 0.00 37.37 5.52 F
4917 11084 1.755380 GATAACTACCACTCCAGCCGT 59.245 52.381 0.00 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1652 0.247736 ACCTGCATCTCCTGTTCGTC 59.752 55.000 0.00 0.0 0.00 4.20 R
2046 2705 3.118371 ACCACGAAGGGAATAGATGAACC 60.118 47.826 0.00 0.0 43.89 3.62 R
2151 2829 3.134574 TCAACAATTAACTCCTGCCGT 57.865 42.857 0.00 0.0 0.00 5.68 R
2535 3486 2.839486 ACTTCAGCCACGATTCTCAA 57.161 45.000 0.00 0.0 0.00 3.02 R
2536 3487 2.839486 AACTTCAGCCACGATTCTCA 57.161 45.000 0.00 0.0 0.00 3.27 R
2907 4440 2.857592 TCTAAGGCGTATGTCCGTTC 57.142 50.000 0.00 0.0 0.00 3.95 R
3675 5478 3.365767 GCATTGTCTCTTCAGGTTGCTTC 60.366 47.826 0.00 0.0 0.00 3.86 R
5104 11322 3.568430 CCCTACTTGTTTGGGACTGAAAC 59.432 47.826 5.88 0.0 42.76 2.78 R
7097 13465 0.041926 GTAACAACGCAACGTGTCCC 60.042 55.000 0.00 0.0 39.99 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.483954 CCCCCTCTAGTCGACGTAA 57.516 57.895 10.46 0.00 0.00 3.18
19 20 1.020437 CCCCCTCTAGTCGACGTAAC 58.980 60.000 10.46 0.00 0.00 2.50
20 21 0.654683 CCCCTCTAGTCGACGTAACG 59.345 60.000 10.46 0.00 0.00 3.18
21 22 0.027324 CCCTCTAGTCGACGTAACGC 59.973 60.000 10.46 0.00 0.00 4.84
22 23 0.723414 CCTCTAGTCGACGTAACGCA 59.277 55.000 10.46 0.00 0.00 5.24
23 24 1.528603 CCTCTAGTCGACGTAACGCAC 60.529 57.143 10.46 0.00 0.00 5.34
24 25 1.392853 CTCTAGTCGACGTAACGCACT 59.607 52.381 10.46 0.00 0.00 4.40
25 26 1.800586 TCTAGTCGACGTAACGCACTT 59.199 47.619 10.46 0.00 0.00 3.16
26 27 2.224079 TCTAGTCGACGTAACGCACTTT 59.776 45.455 10.46 0.00 0.00 2.66
27 28 1.402511 AGTCGACGTAACGCACTTTC 58.597 50.000 10.46 0.00 0.00 2.62
28 29 1.122849 GTCGACGTAACGCACTTTCA 58.877 50.000 0.00 0.00 0.00 2.69
39 40 5.554822 AACGCACTTTCAAGTTTAGACAA 57.445 34.783 0.00 0.00 37.08 3.18
41 42 4.393680 ACGCACTTTCAAGTTTAGACAACA 59.606 37.500 0.00 0.00 37.08 3.33
43 44 5.621228 CGCACTTTCAAGTTTAGACAACATC 59.379 40.000 0.00 0.00 37.08 3.06
92 93 4.625972 CGGGTGCCGTTCTTATTTATTT 57.374 40.909 0.00 0.00 42.73 1.40
93 94 4.989044 CGGGTGCCGTTCTTATTTATTTT 58.011 39.130 0.00 0.00 42.73 1.82
94 95 4.796312 CGGGTGCCGTTCTTATTTATTTTG 59.204 41.667 0.00 0.00 42.73 2.44
95 96 5.620429 CGGGTGCCGTTCTTATTTATTTTGT 60.620 40.000 0.00 0.00 42.73 2.83
96 97 5.575218 GGGTGCCGTTCTTATTTATTTTGTG 59.425 40.000 0.00 0.00 0.00 3.33
97 98 6.153756 GGTGCCGTTCTTATTTATTTTGTGT 58.846 36.000 0.00 0.00 0.00 3.72
98 99 6.088883 GGTGCCGTTCTTATTTATTTTGTGTG 59.911 38.462 0.00 0.00 0.00 3.82
99 100 6.858993 GTGCCGTTCTTATTTATTTTGTGTGA 59.141 34.615 0.00 0.00 0.00 3.58
100 101 7.380065 GTGCCGTTCTTATTTATTTTGTGTGAA 59.620 33.333 0.00 0.00 0.00 3.18
101 102 7.380065 TGCCGTTCTTATTTATTTTGTGTGAAC 59.620 33.333 0.00 0.00 0.00 3.18
102 103 7.593644 GCCGTTCTTATTTATTTTGTGTGAACT 59.406 33.333 0.00 0.00 31.98 3.01
103 104 9.458374 CCGTTCTTATTTATTTTGTGTGAACTT 57.542 29.630 0.00 0.00 31.98 2.66
111 112 8.909708 TTTATTTTGTGTGAACTTTCTGTCTG 57.090 30.769 0.00 0.00 0.00 3.51
112 113 6.757897 ATTTTGTGTGAACTTTCTGTCTGA 57.242 33.333 0.00 0.00 0.00 3.27
113 114 6.567687 TTTTGTGTGAACTTTCTGTCTGAA 57.432 33.333 0.00 0.00 0.00 3.02
114 115 6.567687 TTTGTGTGAACTTTCTGTCTGAAA 57.432 33.333 4.98 4.98 41.85 2.69
124 125 4.621068 TTCTGTCTGAAAGTTGCACTTG 57.379 40.909 0.00 0.00 38.66 3.16
125 126 2.945008 TCTGTCTGAAAGTTGCACTTGG 59.055 45.455 0.00 0.00 38.66 3.61
126 127 1.405105 TGTCTGAAAGTTGCACTTGGC 59.595 47.619 0.00 0.00 38.66 4.52
127 128 1.678101 GTCTGAAAGTTGCACTTGGCT 59.322 47.619 0.00 0.00 38.66 4.75
128 129 1.949525 TCTGAAAGTTGCACTTGGCTC 59.050 47.619 0.00 0.00 38.66 4.70
129 130 0.662619 TGAAAGTTGCACTTGGCTCG 59.337 50.000 0.00 0.00 45.15 5.03
130 131 0.944386 GAAAGTTGCACTTGGCTCGA 59.056 50.000 0.00 0.00 45.15 4.04
131 132 0.947244 AAAGTTGCACTTGGCTCGAG 59.053 50.000 8.45 8.45 45.15 4.04
132 133 0.886490 AAGTTGCACTTGGCTCGAGG 60.886 55.000 15.58 0.00 45.15 4.63
133 134 1.598130 GTTGCACTTGGCTCGAGGT 60.598 57.895 15.58 0.00 45.15 3.85
134 135 1.301716 TTGCACTTGGCTCGAGGTC 60.302 57.895 15.58 0.00 45.15 3.85
135 136 2.435059 GCACTTGGCTCGAGGTCC 60.435 66.667 15.58 8.41 40.25 4.46
136 137 3.059982 CACTTGGCTCGAGGTCCA 58.940 61.111 15.58 11.22 0.00 4.02
137 138 1.599047 CACTTGGCTCGAGGTCCAT 59.401 57.895 15.58 0.00 31.54 3.41
138 139 0.460987 CACTTGGCTCGAGGTCCATC 60.461 60.000 15.58 0.00 31.54 3.51
139 140 1.227089 CTTGGCTCGAGGTCCATCG 60.227 63.158 15.58 4.77 44.07 3.84
140 141 1.949847 CTTGGCTCGAGGTCCATCGT 61.950 60.000 15.58 0.00 43.20 3.73
141 142 1.541310 TTGGCTCGAGGTCCATCGTT 61.541 55.000 15.58 0.00 43.20 3.85
142 143 1.218316 GGCTCGAGGTCCATCGTTT 59.782 57.895 15.58 0.00 43.20 3.60
143 144 0.391263 GGCTCGAGGTCCATCGTTTT 60.391 55.000 15.58 0.00 43.20 2.43
144 145 1.000145 GCTCGAGGTCCATCGTTTTC 59.000 55.000 15.58 0.00 43.20 2.29
145 146 1.269166 CTCGAGGTCCATCGTTTTCG 58.731 55.000 3.91 0.43 43.20 3.46
156 157 2.426261 GTTTTCGACGGGTTGCGC 60.426 61.111 0.00 0.00 0.00 6.09
157 158 4.003011 TTTTCGACGGGTTGCGCG 62.003 61.111 0.00 0.00 45.13 6.86
165 166 3.131478 GGGTTGCGCGCTGGTTAT 61.131 61.111 33.29 0.00 0.00 1.89
166 167 2.100216 GGTTGCGCGCTGGTTATG 59.900 61.111 33.29 0.00 0.00 1.90
167 168 2.686816 GGTTGCGCGCTGGTTATGT 61.687 57.895 33.29 0.00 0.00 2.29
168 169 1.226018 GTTGCGCGCTGGTTATGTC 60.226 57.895 33.29 7.81 0.00 3.06
169 170 1.375396 TTGCGCGCTGGTTATGTCT 60.375 52.632 33.29 0.00 0.00 3.41
170 171 0.108567 TTGCGCGCTGGTTATGTCTA 60.109 50.000 33.29 3.51 0.00 2.59
171 172 0.104120 TGCGCGCTGGTTATGTCTAT 59.896 50.000 33.29 0.00 0.00 1.98
172 173 1.217882 GCGCGCTGGTTATGTCTATT 58.782 50.000 26.67 0.00 0.00 1.73
173 174 1.597663 GCGCGCTGGTTATGTCTATTT 59.402 47.619 26.67 0.00 0.00 1.40
174 175 2.031683 GCGCGCTGGTTATGTCTATTTT 59.968 45.455 26.67 0.00 0.00 1.82
175 176 3.607439 CGCGCTGGTTATGTCTATTTTG 58.393 45.455 5.56 0.00 0.00 2.44
176 177 3.546020 CGCGCTGGTTATGTCTATTTTGG 60.546 47.826 5.56 0.00 0.00 3.28
177 178 3.792124 GCGCTGGTTATGTCTATTTTGGC 60.792 47.826 0.00 0.00 0.00 4.52
178 179 3.546020 CGCTGGTTATGTCTATTTTGGCG 60.546 47.826 0.00 0.00 0.00 5.69
179 180 3.243068 GCTGGTTATGTCTATTTTGGCGG 60.243 47.826 0.00 0.00 0.00 6.13
180 181 3.283751 TGGTTATGTCTATTTTGGCGGG 58.716 45.455 0.00 0.00 0.00 6.13
181 182 3.054287 TGGTTATGTCTATTTTGGCGGGA 60.054 43.478 0.00 0.00 0.00 5.14
182 183 3.564225 GGTTATGTCTATTTTGGCGGGAG 59.436 47.826 0.00 0.00 0.00 4.30
183 184 2.348411 ATGTCTATTTTGGCGGGAGG 57.652 50.000 0.00 0.00 0.00 4.30
184 185 0.988832 TGTCTATTTTGGCGGGAGGT 59.011 50.000 0.00 0.00 0.00 3.85
185 186 1.353022 TGTCTATTTTGGCGGGAGGTT 59.647 47.619 0.00 0.00 0.00 3.50
186 187 2.014857 GTCTATTTTGGCGGGAGGTTC 58.985 52.381 0.00 0.00 0.00 3.62
187 188 1.064979 TCTATTTTGGCGGGAGGTTCC 60.065 52.381 0.00 0.00 35.23 3.62
188 189 0.996583 TATTTTGGCGGGAGGTTCCT 59.003 50.000 0.00 0.00 36.57 3.36
189 190 0.114364 ATTTTGGCGGGAGGTTCCTT 59.886 50.000 0.00 0.00 36.57 3.36
190 191 0.825840 TTTTGGCGGGAGGTTCCTTG 60.826 55.000 0.00 0.00 36.57 3.61
191 192 2.002018 TTTGGCGGGAGGTTCCTTGT 62.002 55.000 0.00 0.00 36.57 3.16
192 193 2.359975 GGCGGGAGGTTCCTTGTG 60.360 66.667 0.00 0.00 36.57 3.33
193 194 2.430367 GCGGGAGGTTCCTTGTGT 59.570 61.111 0.00 0.00 36.57 3.72
194 195 1.966451 GCGGGAGGTTCCTTGTGTG 60.966 63.158 0.00 0.00 36.57 3.82
195 196 1.450211 CGGGAGGTTCCTTGTGTGT 59.550 57.895 0.00 0.00 36.57 3.72
196 197 0.602905 CGGGAGGTTCCTTGTGTGTC 60.603 60.000 0.00 0.00 36.57 3.67
197 198 0.602905 GGGAGGTTCCTTGTGTGTCG 60.603 60.000 0.00 0.00 36.57 4.35
198 199 0.391597 GGAGGTTCCTTGTGTGTCGA 59.608 55.000 0.00 0.00 32.53 4.20
199 200 1.605712 GGAGGTTCCTTGTGTGTCGAG 60.606 57.143 0.00 0.00 32.53 4.04
200 201 0.393077 AGGTTCCTTGTGTGTCGAGG 59.607 55.000 0.00 0.00 46.55 4.63
201 202 0.602905 GGTTCCTTGTGTGTCGAGGG 60.603 60.000 0.00 0.00 45.51 4.30
202 203 0.391597 GTTCCTTGTGTGTCGAGGGA 59.608 55.000 0.00 0.00 45.51 4.20
203 204 1.002087 GTTCCTTGTGTGTCGAGGGAT 59.998 52.381 0.00 0.00 45.51 3.85
204 205 1.348064 TCCTTGTGTGTCGAGGGATT 58.652 50.000 0.00 0.00 45.51 3.01
205 206 1.001974 TCCTTGTGTGTCGAGGGATTG 59.998 52.381 0.00 0.00 45.51 2.67
206 207 1.270839 CCTTGTGTGTCGAGGGATTGT 60.271 52.381 0.00 0.00 42.58 2.71
207 208 2.069273 CTTGTGTGTCGAGGGATTGTC 58.931 52.381 0.00 0.00 0.00 3.18
208 209 0.320374 TGTGTGTCGAGGGATTGTCC 59.680 55.000 0.00 0.00 35.23 4.02
209 210 0.736325 GTGTGTCGAGGGATTGTCCG 60.736 60.000 0.00 0.00 37.43 4.79
210 211 1.183030 TGTGTCGAGGGATTGTCCGT 61.183 55.000 0.00 0.00 37.43 4.69
211 212 0.037605 GTGTCGAGGGATTGTCCGTT 60.038 55.000 0.00 0.00 37.43 4.44
212 213 0.037697 TGTCGAGGGATTGTCCGTTG 60.038 55.000 0.00 0.49 37.43 4.10
213 214 0.739813 GTCGAGGGATTGTCCGTTGG 60.740 60.000 6.19 0.00 37.43 3.77
214 215 1.189524 TCGAGGGATTGTCCGTTGGT 61.190 55.000 6.19 0.00 37.43 3.67
215 216 0.321298 CGAGGGATTGTCCGTTGGTT 60.321 55.000 0.00 0.00 37.43 3.67
216 217 1.165270 GAGGGATTGTCCGTTGGTTG 58.835 55.000 0.00 0.00 37.43 3.77
217 218 0.476771 AGGGATTGTCCGTTGGTTGT 59.523 50.000 0.00 0.00 37.43 3.32
218 219 0.879090 GGGATTGTCCGTTGGTTGTC 59.121 55.000 0.00 0.00 37.43 3.18
219 220 0.515564 GGATTGTCCGTTGGTTGTCG 59.484 55.000 0.00 0.00 0.00 4.35
220 221 1.223187 GATTGTCCGTTGGTTGTCGT 58.777 50.000 0.00 0.00 0.00 4.34
221 222 1.600485 GATTGTCCGTTGGTTGTCGTT 59.400 47.619 0.00 0.00 0.00 3.85
222 223 2.306341 TTGTCCGTTGGTTGTCGTTA 57.694 45.000 0.00 0.00 0.00 3.18
223 224 1.569708 TGTCCGTTGGTTGTCGTTAC 58.430 50.000 0.00 0.00 0.00 2.50
224 225 0.861185 GTCCGTTGGTTGTCGTTACC 59.139 55.000 0.00 0.00 36.17 2.85
225 226 0.249826 TCCGTTGGTTGTCGTTACCC 60.250 55.000 0.00 0.00 34.66 3.69
226 227 1.229975 CCGTTGGTTGTCGTTACCCC 61.230 60.000 0.00 0.00 34.66 4.95
227 228 0.532417 CGTTGGTTGTCGTTACCCCA 60.532 55.000 0.00 0.00 34.66 4.96
228 229 1.878948 CGTTGGTTGTCGTTACCCCAT 60.879 52.381 0.00 0.00 34.66 4.00
229 230 1.538075 GTTGGTTGTCGTTACCCCATG 59.462 52.381 0.00 0.00 34.66 3.66
230 231 0.766131 TGGTTGTCGTTACCCCATGT 59.234 50.000 0.00 0.00 34.66 3.21
231 232 1.143277 TGGTTGTCGTTACCCCATGTT 59.857 47.619 0.00 0.00 34.66 2.71
232 233 1.808343 GGTTGTCGTTACCCCATGTTC 59.192 52.381 0.00 0.00 0.00 3.18
233 234 2.496111 GTTGTCGTTACCCCATGTTCA 58.504 47.619 0.00 0.00 0.00 3.18
234 235 2.465860 TGTCGTTACCCCATGTTCAG 57.534 50.000 0.00 0.00 0.00 3.02
235 236 1.002659 TGTCGTTACCCCATGTTCAGG 59.997 52.381 0.00 0.00 0.00 3.86
236 237 1.002773 GTCGTTACCCCATGTTCAGGT 59.997 52.381 0.00 0.00 37.69 4.00
237 238 1.700739 TCGTTACCCCATGTTCAGGTT 59.299 47.619 0.00 0.00 35.02 3.50
238 239 2.905085 TCGTTACCCCATGTTCAGGTTA 59.095 45.455 0.00 0.00 35.02 2.85
239 240 3.004862 CGTTACCCCATGTTCAGGTTAC 58.995 50.000 0.00 0.00 35.02 2.50
240 241 3.004862 GTTACCCCATGTTCAGGTTACG 58.995 50.000 0.00 0.00 35.02 3.18
241 242 1.061546 ACCCCATGTTCAGGTTACGT 58.938 50.000 0.00 0.00 0.00 3.57
242 243 1.271163 ACCCCATGTTCAGGTTACGTG 60.271 52.381 0.00 0.00 33.34 4.49
243 244 1.271163 CCCCATGTTCAGGTTACGTGT 60.271 52.381 0.00 0.00 31.98 4.49
244 245 2.027929 CCCCATGTTCAGGTTACGTGTA 60.028 50.000 0.00 0.00 31.98 2.90
245 246 2.997986 CCCATGTTCAGGTTACGTGTAC 59.002 50.000 0.00 7.65 31.98 2.90
246 247 3.306502 CCCATGTTCAGGTTACGTGTACT 60.307 47.826 13.94 0.00 31.98 2.73
247 248 4.082081 CCCATGTTCAGGTTACGTGTACTA 60.082 45.833 13.94 3.89 31.98 1.82
248 249 4.860907 CCATGTTCAGGTTACGTGTACTAC 59.139 45.833 13.94 6.11 31.98 2.73
249 250 5.336213 CCATGTTCAGGTTACGTGTACTACT 60.336 44.000 13.94 0.05 31.98 2.57
250 251 5.362556 TGTTCAGGTTACGTGTACTACTC 57.637 43.478 13.94 0.00 0.00 2.59
251 252 4.083855 TGTTCAGGTTACGTGTACTACTCG 60.084 45.833 13.94 8.72 40.48 4.18
253 254 3.433274 TCAGGTTACGTGTACTACTCGTG 59.567 47.826 21.04 8.51 46.01 4.35
254 255 3.187227 CAGGTTACGTGTACTACTCGTGT 59.813 47.826 21.04 0.00 46.01 4.49
255 256 4.388773 CAGGTTACGTGTACTACTCGTGTA 59.611 45.833 21.04 10.04 46.01 2.90
256 257 4.994852 AGGTTACGTGTACTACTCGTGTAA 59.005 41.667 21.04 9.64 46.01 2.41
257 258 5.643777 AGGTTACGTGTACTACTCGTGTAAT 59.356 40.000 21.04 6.94 46.01 1.89
258 259 6.149474 AGGTTACGTGTACTACTCGTGTAATT 59.851 38.462 21.04 5.63 46.01 1.40
259 260 6.249260 GGTTACGTGTACTACTCGTGTAATTG 59.751 42.308 21.04 0.00 46.01 2.32
260 261 4.726416 ACGTGTACTACTCGTGTAATTGG 58.274 43.478 13.95 0.00 45.03 3.16
261 262 4.100529 CGTGTACTACTCGTGTAATTGGG 58.899 47.826 0.00 0.00 31.32 4.12
262 263 4.142622 CGTGTACTACTCGTGTAATTGGGA 60.143 45.833 0.00 0.00 31.32 4.37
263 264 5.338365 GTGTACTACTCGTGTAATTGGGAG 58.662 45.833 0.00 0.00 0.00 4.30
264 265 5.124457 GTGTACTACTCGTGTAATTGGGAGA 59.876 44.000 0.00 0.00 0.00 3.71
265 266 5.889853 TGTACTACTCGTGTAATTGGGAGAT 59.110 40.000 0.00 0.00 0.00 2.75
266 267 5.934402 ACTACTCGTGTAATTGGGAGATT 57.066 39.130 0.00 0.00 0.00 2.40
267 268 6.295719 ACTACTCGTGTAATTGGGAGATTT 57.704 37.500 0.00 0.00 0.00 2.17
268 269 6.708285 ACTACTCGTGTAATTGGGAGATTTT 58.292 36.000 0.00 0.00 0.00 1.82
269 270 7.844009 ACTACTCGTGTAATTGGGAGATTTTA 58.156 34.615 0.00 0.00 0.00 1.52
270 271 6.980051 ACTCGTGTAATTGGGAGATTTTAC 57.020 37.500 0.00 0.00 0.00 2.01
271 272 5.878669 ACTCGTGTAATTGGGAGATTTTACC 59.121 40.000 0.00 0.00 0.00 2.85
272 273 4.871557 TCGTGTAATTGGGAGATTTTACCG 59.128 41.667 0.00 0.00 0.00 4.02
273 274 4.034742 CGTGTAATTGGGAGATTTTACCGG 59.965 45.833 0.00 0.00 0.00 5.28
274 275 4.945543 GTGTAATTGGGAGATTTTACCGGT 59.054 41.667 13.98 13.98 0.00 5.28
275 276 4.944930 TGTAATTGGGAGATTTTACCGGTG 59.055 41.667 19.93 0.00 0.00 4.94
276 277 2.500392 TTGGGAGATTTTACCGGTGG 57.500 50.000 19.93 0.00 0.00 4.61
277 278 1.659022 TGGGAGATTTTACCGGTGGA 58.341 50.000 19.93 2.18 0.00 4.02
278 279 1.986631 TGGGAGATTTTACCGGTGGAA 59.013 47.619 19.93 12.29 0.00 3.53
279 280 2.578940 TGGGAGATTTTACCGGTGGAAT 59.421 45.455 19.93 16.78 0.00 3.01
280 281 3.010808 TGGGAGATTTTACCGGTGGAATT 59.989 43.478 19.93 8.42 0.00 2.17
281 282 3.630769 GGGAGATTTTACCGGTGGAATTC 59.369 47.826 19.93 16.36 0.00 2.17
282 283 3.311596 GGAGATTTTACCGGTGGAATTCG 59.688 47.826 19.93 0.00 0.00 3.34
283 284 4.186159 GAGATTTTACCGGTGGAATTCGA 58.814 43.478 19.93 0.00 0.00 3.71
284 285 4.581868 AGATTTTACCGGTGGAATTCGAA 58.418 39.130 19.93 0.00 0.00 3.71
285 286 4.634443 AGATTTTACCGGTGGAATTCGAAG 59.366 41.667 19.93 0.00 0.00 3.79
286 287 2.389962 TTACCGGTGGAATTCGAAGG 57.610 50.000 19.93 10.37 0.00 3.46
287 288 1.559368 TACCGGTGGAATTCGAAGGA 58.441 50.000 19.93 0.00 0.00 3.36
288 289 0.249398 ACCGGTGGAATTCGAAGGAG 59.751 55.000 6.12 0.71 0.00 3.69
289 290 0.249398 CCGGTGGAATTCGAAGGAGT 59.751 55.000 3.35 0.00 0.00 3.85
290 291 1.338769 CCGGTGGAATTCGAAGGAGTT 60.339 52.381 3.35 0.00 0.00 3.01
291 292 2.000447 CGGTGGAATTCGAAGGAGTTC 59.000 52.381 3.35 2.20 37.97 3.01
292 293 2.611971 CGGTGGAATTCGAAGGAGTTCA 60.612 50.000 3.35 0.00 39.81 3.18
293 294 3.610911 GGTGGAATTCGAAGGAGTTCAT 58.389 45.455 3.35 0.00 39.81 2.57
294 295 4.010349 GGTGGAATTCGAAGGAGTTCATT 58.990 43.478 3.35 0.00 39.81 2.57
295 296 4.142600 GGTGGAATTCGAAGGAGTTCATTG 60.143 45.833 3.35 0.00 39.81 2.82
296 297 3.440173 TGGAATTCGAAGGAGTTCATTGC 59.560 43.478 3.35 0.00 39.81 3.56
297 298 3.440173 GGAATTCGAAGGAGTTCATTGCA 59.560 43.478 3.35 0.00 39.81 4.08
298 299 4.096984 GGAATTCGAAGGAGTTCATTGCAT 59.903 41.667 3.35 0.00 39.81 3.96
299 300 4.889832 ATTCGAAGGAGTTCATTGCATC 57.110 40.909 3.35 0.00 32.36 3.91
300 301 2.270923 TCGAAGGAGTTCATTGCATCG 58.729 47.619 0.00 0.00 32.36 3.84
301 302 2.002586 CGAAGGAGTTCATTGCATCGT 58.997 47.619 0.00 0.00 32.36 3.73
302 303 3.119280 TCGAAGGAGTTCATTGCATCGTA 60.119 43.478 0.00 0.00 32.36 3.43
303 304 3.616821 CGAAGGAGTTCATTGCATCGTAA 59.383 43.478 0.00 0.00 32.36 3.18
304 305 4.092821 CGAAGGAGTTCATTGCATCGTAAA 59.907 41.667 0.00 0.00 32.36 2.01
305 306 5.390461 CGAAGGAGTTCATTGCATCGTAAAA 60.390 40.000 0.00 0.00 32.36 1.52
306 307 5.551760 AGGAGTTCATTGCATCGTAAAAG 57.448 39.130 0.00 0.00 0.00 2.27
307 308 5.245531 AGGAGTTCATTGCATCGTAAAAGA 58.754 37.500 0.00 0.00 0.00 2.52
308 309 5.882557 AGGAGTTCATTGCATCGTAAAAGAT 59.117 36.000 0.00 0.00 0.00 2.40
309 310 6.375455 AGGAGTTCATTGCATCGTAAAAGATT 59.625 34.615 0.00 0.00 0.00 2.40
310 311 6.470235 GGAGTTCATTGCATCGTAAAAGATTG 59.530 38.462 0.00 0.00 0.00 2.67
311 312 6.324819 AGTTCATTGCATCGTAAAAGATTGG 58.675 36.000 0.00 0.00 0.00 3.16
312 313 5.247507 TCATTGCATCGTAAAAGATTGGG 57.752 39.130 0.00 0.00 0.00 4.12
313 314 3.502191 TTGCATCGTAAAAGATTGGGC 57.498 42.857 0.00 0.00 0.00 5.36
314 315 1.748493 TGCATCGTAAAAGATTGGGCC 59.252 47.619 0.00 0.00 0.00 5.80
315 316 1.748493 GCATCGTAAAAGATTGGGCCA 59.252 47.619 0.00 0.00 0.00 5.36
316 317 2.165437 GCATCGTAAAAGATTGGGCCAA 59.835 45.455 23.33 23.33 0.00 4.52
317 318 3.367910 GCATCGTAAAAGATTGGGCCAAA 60.368 43.478 24.97 0.00 0.00 3.28
318 319 4.680440 GCATCGTAAAAGATTGGGCCAAAT 60.680 41.667 24.97 4.54 0.00 2.32
319 320 4.712122 TCGTAAAAGATTGGGCCAAATC 57.288 40.909 24.97 23.55 36.91 2.17
320 321 4.082845 TCGTAAAAGATTGGGCCAAATCA 58.917 39.130 30.58 10.71 38.74 2.57
321 322 4.709397 TCGTAAAAGATTGGGCCAAATCAT 59.291 37.500 30.58 19.16 38.74 2.45
322 323 5.043248 CGTAAAAGATTGGGCCAAATCATC 58.957 41.667 30.58 16.13 38.74 2.92
323 324 3.806625 AAAGATTGGGCCAAATCATCG 57.193 42.857 30.58 0.00 38.74 3.84
324 325 1.696063 AGATTGGGCCAAATCATCGG 58.304 50.000 30.58 0.00 38.74 4.18
342 343 3.041940 CACGTCCAAGGTCGTGCC 61.042 66.667 21.81 0.00 46.18 5.01
351 352 3.490890 GGTCGTGCCTTCATCAGC 58.509 61.111 0.00 0.00 0.00 4.26
374 375 3.371487 CCCCAACAGTTATGCTCATGGTA 60.371 47.826 0.00 0.00 31.37 3.25
438 440 3.236047 TGCCCCGACTAATAAGCTCATA 58.764 45.455 0.00 0.00 0.00 2.15
518 520 8.873215 ATAGAACCACAATAATAGACTTGACG 57.127 34.615 0.00 0.00 0.00 4.35
537 539 6.578020 TGACGTTAGCTATAAACATTTCCG 57.422 37.500 0.00 0.00 0.00 4.30
541 543 6.757947 ACGTTAGCTATAAACATTTCCGCTTA 59.242 34.615 0.00 0.00 0.00 3.09
544 546 9.252962 GTTAGCTATAAACATTTCCGCTTAGTA 57.747 33.333 0.00 0.00 0.00 1.82
753 767 6.177822 CAGAGTCGCAAACATTTTTCAAAAC 58.822 36.000 0.00 0.00 0.00 2.43
754 768 5.866633 AGAGTCGCAAACATTTTTCAAAACA 59.133 32.000 0.00 0.00 0.00 2.83
759 774 6.587990 TCGCAAACATTTTTCAAAACAGAGAA 59.412 30.769 0.00 0.00 0.00 2.87
786 801 8.877808 TTTTTGGCAAATCAAAAACAGTTTTT 57.122 23.077 16.87 16.87 45.75 1.94
882 916 8.634475 AAAAGGAAACGAGAAAAATGAAGAAG 57.366 30.769 0.00 0.00 0.00 2.85
923 974 2.032981 CGTTTGCTGTTTGCTCCCT 58.967 52.632 0.00 0.00 43.37 4.20
931 982 0.260230 TGTTTGCTCCCTTTCCACCA 59.740 50.000 0.00 0.00 0.00 4.17
944 1029 0.764369 TCCACCACACTGCCTCTTCT 60.764 55.000 0.00 0.00 0.00 2.85
951 1036 2.124942 CTGCCTCTTCTTCCGGCC 60.125 66.667 0.00 0.00 43.12 6.13
1178 1278 4.147449 CATGGACGAGCGGGCAGA 62.147 66.667 0.00 0.00 0.00 4.26
1228 1328 2.101415 GGGAATTGGTTTAGAGCATGGC 59.899 50.000 0.00 0.00 32.51 4.40
1349 1456 6.626623 GCTTTCATCATGTTTCCAGTAGCATT 60.627 38.462 0.00 0.00 0.00 3.56
1371 1479 6.638096 TTAATTCCTGTATGTGATGCCATG 57.362 37.500 0.00 0.00 0.00 3.66
1449 1557 8.893219 TCTGTTTATGATGATTCAGTACCATC 57.107 34.615 0.00 0.00 37.71 3.51
1451 1559 8.667076 TGTTTATGATGATTCAGTACCATCTG 57.333 34.615 9.52 0.00 37.97 2.90
1508 1617 9.981114 CACCTAAAATTTAACAGGAACTCAAAT 57.019 29.630 16.37 0.00 34.60 2.32
1729 1847 8.454106 GCATGTGTTCTTCAAGTAAGTTGATAT 58.546 33.333 0.00 0.00 44.89 1.63
1828 2483 2.853077 TCACACTCAGAGAGGGATCCTA 59.147 50.000 12.58 0.00 34.53 2.94
2044 2703 3.066621 CAGCCACTAGAAAACAGTTTGCA 59.933 43.478 6.79 0.00 0.00 4.08
2045 2704 3.699038 AGCCACTAGAAAACAGTTTGCAA 59.301 39.130 6.79 0.00 0.00 4.08
2046 2705 4.044426 GCCACTAGAAAACAGTTTGCAAG 58.956 43.478 6.79 3.94 0.00 4.01
2151 2829 6.014840 GGGTAGGAAATCGTCATGTATAGGAA 60.015 42.308 0.00 0.00 0.00 3.36
2200 2878 7.521423 GCCATTGTATGCATCCGTTTCTATTTA 60.521 37.037 0.19 0.00 0.00 1.40
2271 2958 2.819608 GCAGTTCTTGACCATGCCTTTA 59.180 45.455 0.00 0.00 0.00 1.85
2475 3416 4.479156 AAACTTGGGTGGAGGGAAATAA 57.521 40.909 0.00 0.00 0.00 1.40
2477 3418 3.981212 ACTTGGGTGGAGGGAAATAATG 58.019 45.455 0.00 0.00 0.00 1.90
2519 3470 1.549203 CCATAGGTGGCTGCAGTTTT 58.451 50.000 16.64 0.00 39.01 2.43
2520 3471 1.895131 CCATAGGTGGCTGCAGTTTTT 59.105 47.619 16.64 0.44 39.01 1.94
2572 3689 9.476202 GGCTGAAGTTATTTGTTTAGTTCAATT 57.524 29.630 0.00 0.00 32.54 2.32
2673 3792 5.305386 AGCATATGACTACTGTTATCCAGCA 59.695 40.000 6.97 0.00 45.68 4.41
2781 4159 9.093970 TGTATTTTATTGACGTGATTGACCTAG 57.906 33.333 0.00 0.00 0.00 3.02
2794 4172 7.903431 CGTGATTGACCTAGCTTTATAACAAAC 59.097 37.037 0.00 0.00 0.00 2.93
2907 4440 5.470098 CGTCAATTAATCCCCCATCTTACTG 59.530 44.000 0.00 0.00 0.00 2.74
2910 4443 7.013369 GTCAATTAATCCCCCATCTTACTGAAC 59.987 40.741 0.00 0.00 0.00 3.18
2922 4455 1.466856 TACTGAACGGACATACGCCT 58.533 50.000 0.00 0.00 37.37 5.52
2961 4527 3.118884 TGTCGCCAGATTACTAGGGAAAC 60.119 47.826 0.00 0.00 30.29 2.78
4373 9891 4.371786 TCTACATTTATTCTCGCAGCAGG 58.628 43.478 0.00 0.00 0.00 4.85
4472 10082 6.466326 CCCCCATCAGTCACATAAGACATAAT 60.466 42.308 0.00 0.00 40.98 1.28
4477 10087 7.914427 TCAGTCACATAAGACATAATACCCT 57.086 36.000 0.00 0.00 40.98 4.34
4917 11084 1.755380 GATAACTACCACTCCAGCCGT 59.245 52.381 0.00 0.00 0.00 5.68
5104 11322 3.343990 CAAATGCAACAACAACAAAGCG 58.656 40.909 0.00 0.00 0.00 4.68
5574 11798 0.882927 TGAGGCTTGCGTACGCTTTT 60.883 50.000 36.99 19.79 42.51 2.27
5759 11989 4.978099 TCTTTCTCTGATGAAAAGCAGGT 58.022 39.130 0.00 0.00 35.79 4.00
5761 11991 6.533730 TCTTTCTCTGATGAAAAGCAGGTTA 58.466 36.000 0.00 0.00 35.79 2.85
5762 11992 7.170965 TCTTTCTCTGATGAAAAGCAGGTTAT 58.829 34.615 0.00 0.00 35.79 1.89
5764 11994 6.992063 TCTCTGATGAAAAGCAGGTTATTC 57.008 37.500 0.00 0.00 33.05 1.75
5765 11995 6.715280 TCTCTGATGAAAAGCAGGTTATTCT 58.285 36.000 0.00 0.00 33.05 2.40
5774 12004 8.203485 TGAAAAGCAGGTTATTCTTTCATTTGT 58.797 29.630 0.00 0.00 30.52 2.83
5775 12005 7.951530 AAAGCAGGTTATTCTTTCATTTGTG 57.048 32.000 0.00 0.00 0.00 3.33
5804 12036 2.649831 GCATCCCATACCATGCTGG 58.350 57.895 1.16 1.16 41.93 4.85
5819 12051 2.722094 TGCTGGCTTCGTTTCCATAAT 58.278 42.857 0.00 0.00 0.00 1.28
5853 12085 1.002366 CTCATGTGGCTCGCAACTAC 58.998 55.000 0.00 0.00 0.00 2.73
5854 12086 0.735978 TCATGTGGCTCGCAACTACG 60.736 55.000 0.00 0.00 0.00 3.51
5855 12087 1.014044 CATGTGGCTCGCAACTACGT 61.014 55.000 0.00 0.00 0.00 3.57
5856 12088 0.320421 ATGTGGCTCGCAACTACGTT 60.320 50.000 0.00 0.00 0.00 3.99
6047 12282 2.646175 CCGTTCTGCCCCGAGAAGA 61.646 63.158 0.00 0.00 32.53 2.87
6048 12283 1.292223 CGTTCTGCCCCGAGAAGAA 59.708 57.895 0.00 0.00 32.53 2.52
6049 12284 0.737715 CGTTCTGCCCCGAGAAGAAG 60.738 60.000 0.00 0.00 32.53 2.85
6194 12429 1.225426 GATGCACCAGGCTCATCCA 59.775 57.895 9.42 0.00 45.15 3.41
6195 12430 0.394762 GATGCACCAGGCTCATCCAA 60.395 55.000 9.42 0.00 45.15 3.53
6244 12481 7.010645 GCACTGTACCTCTCTAAAATAAAGAGC 59.989 40.741 0.00 0.00 40.30 4.09
6257 12494 0.892814 AAAGAGCAGTCAAGCTGGGC 60.893 55.000 0.00 0.00 46.75 5.36
6691 12928 3.931468 CACTCTCCATACAAGTTGCTCTG 59.069 47.826 1.81 0.00 0.00 3.35
6863 13220 4.537015 GTTCCTTTCTTTGGTGTTCATCG 58.463 43.478 0.00 0.00 0.00 3.84
6866 13223 3.057315 CCTTTCTTTGGTGTTCATCGCAT 60.057 43.478 0.00 0.00 0.00 4.73
6940 13307 8.048534 ACCTTTGAGATCAATGTGAATAACAG 57.951 34.615 0.00 0.00 43.64 3.16
6990 13357 4.326826 TGAGGCACTTCGAAATGAGAATT 58.673 39.130 11.38 0.00 41.55 2.17
6991 13358 4.761739 TGAGGCACTTCGAAATGAGAATTT 59.238 37.500 11.38 0.00 41.55 1.82
7015 13383 1.461127 GAGTTCTGTAAAGGTGCGCTG 59.539 52.381 9.73 0.00 0.00 5.18
7093 13461 3.690487 CGTATCCGGTTGGCCATAA 57.310 52.632 6.09 0.00 34.14 1.90
7094 13462 2.178912 CGTATCCGGTTGGCCATAAT 57.821 50.000 6.09 0.00 34.14 1.28
7095 13463 2.073816 CGTATCCGGTTGGCCATAATC 58.926 52.381 6.09 0.00 34.14 1.75
7096 13464 2.073816 GTATCCGGTTGGCCATAATCG 58.926 52.381 6.09 4.22 34.10 3.34
7097 13465 3.744559 CCGGTTGGCCATAATCGG 58.255 61.111 14.56 14.56 46.55 4.18
7098 13466 3.744559 CGGTTGGCCATAATCGGG 58.255 61.111 6.09 0.00 30.83 5.14
7121 13489 0.881600 ACGTTGCGTTGTTACCCTCC 60.882 55.000 0.00 0.00 36.35 4.30
7177 13545 2.207590 TCATGAGCATGCTTGATCGTC 58.792 47.619 23.61 7.83 41.23 4.20
7256 13624 2.743636 TGACCTCGATGTCAACTTCC 57.256 50.000 19.48 0.00 42.06 3.46
7257 13625 2.248248 TGACCTCGATGTCAACTTCCT 58.752 47.619 19.48 0.00 42.06 3.36
7258 13626 2.632996 TGACCTCGATGTCAACTTCCTT 59.367 45.455 19.48 0.00 42.06 3.36
7259 13627 3.071023 TGACCTCGATGTCAACTTCCTTT 59.929 43.478 19.48 0.00 42.06 3.11
7260 13628 3.403038 ACCTCGATGTCAACTTCCTTTG 58.597 45.455 0.00 0.00 0.00 2.77
7261 13629 3.181454 ACCTCGATGTCAACTTCCTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
7262 13630 3.815401 CCTCGATGTCAACTTCCTTTGTT 59.185 43.478 0.00 0.00 0.00 2.83
7263 13631 4.083802 CCTCGATGTCAACTTCCTTTGTTC 60.084 45.833 0.00 0.00 0.00 3.18
7264 13632 3.493129 TCGATGTCAACTTCCTTTGTTCG 59.507 43.478 0.00 0.00 0.00 3.95
7265 13633 3.493129 CGATGTCAACTTCCTTTGTTCGA 59.507 43.478 0.00 0.00 31.90 3.71
7266 13634 4.376413 CGATGTCAACTTCCTTTGTTCGAG 60.376 45.833 0.00 0.00 31.90 4.04
7267 13635 3.869065 TGTCAACTTCCTTTGTTCGAGT 58.131 40.909 0.00 0.00 0.00 4.18
7268 13636 3.621268 TGTCAACTTCCTTTGTTCGAGTG 59.379 43.478 0.00 0.00 0.00 3.51
7269 13637 3.869246 GTCAACTTCCTTTGTTCGAGTGA 59.131 43.478 0.00 0.00 0.00 3.41
7270 13638 4.025647 GTCAACTTCCTTTGTTCGAGTGAG 60.026 45.833 0.00 0.00 0.00 3.51
7271 13639 4.119862 CAACTTCCTTTGTTCGAGTGAGA 58.880 43.478 0.00 0.00 0.00 3.27
7272 13640 3.983741 ACTTCCTTTGTTCGAGTGAGAG 58.016 45.455 0.00 0.00 0.00 3.20
7273 13641 3.243907 ACTTCCTTTGTTCGAGTGAGAGG 60.244 47.826 0.00 0.00 0.00 3.69
7274 13642 1.618837 TCCTTTGTTCGAGTGAGAGGG 59.381 52.381 4.73 0.00 0.00 4.30
7275 13643 1.433534 CTTTGTTCGAGTGAGAGGGC 58.566 55.000 0.00 0.00 0.00 5.19
7276 13644 0.756294 TTTGTTCGAGTGAGAGGGCA 59.244 50.000 0.00 0.00 0.00 5.36
7277 13645 0.318441 TTGTTCGAGTGAGAGGGCAG 59.682 55.000 0.00 0.00 0.00 4.85
7278 13646 0.539669 TGTTCGAGTGAGAGGGCAGA 60.540 55.000 0.00 0.00 0.00 4.26
7279 13647 0.172352 GTTCGAGTGAGAGGGCAGAG 59.828 60.000 0.00 0.00 0.00 3.35
7280 13648 0.967887 TTCGAGTGAGAGGGCAGAGG 60.968 60.000 0.00 0.00 0.00 3.69
7281 13649 2.422231 CGAGTGAGAGGGCAGAGGG 61.422 68.421 0.00 0.00 0.00 4.30
7282 13650 2.686835 AGTGAGAGGGCAGAGGGC 60.687 66.667 0.00 0.00 43.74 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.020437 GTTACGTCGACTAGAGGGGG 58.980 60.000 14.70 0.00 38.94 5.40
1 2 0.654683 CGTTACGTCGACTAGAGGGG 59.345 60.000 14.70 0.00 38.94 4.79
3 4 0.723414 TGCGTTACGTCGACTAGAGG 59.277 55.000 14.70 5.72 40.36 3.69
4 5 1.392853 AGTGCGTTACGTCGACTAGAG 59.607 52.381 14.70 0.00 0.00 2.43
5 6 1.432514 AGTGCGTTACGTCGACTAGA 58.567 50.000 14.70 0.00 0.00 2.43
6 7 2.238245 AAGTGCGTTACGTCGACTAG 57.762 50.000 14.70 0.96 0.00 2.57
7 8 2.032117 TGAAAGTGCGTTACGTCGACTA 60.032 45.455 14.70 2.35 0.00 2.59
8 9 1.268692 TGAAAGTGCGTTACGTCGACT 60.269 47.619 14.70 3.63 0.00 4.18
10 11 1.782569 CTTGAAAGTGCGTTACGTCGA 59.217 47.619 6.63 0.00 0.00 4.20
11 12 1.519758 ACTTGAAAGTGCGTTACGTCG 59.480 47.619 6.63 0.00 37.98 5.12
12 13 3.580794 AACTTGAAAGTGCGTTACGTC 57.419 42.857 6.63 0.00 39.66 4.34
13 14 4.805192 TCTAAACTTGAAAGTGCGTTACGT 59.195 37.500 6.63 0.00 39.66 3.57
14 15 5.128468 GTCTAAACTTGAAAGTGCGTTACG 58.872 41.667 0.00 0.00 39.66 3.18
15 16 6.039781 TGTCTAAACTTGAAAGTGCGTTAC 57.960 37.500 0.00 0.00 39.66 2.50
16 17 6.092396 TGTTGTCTAAACTTGAAAGTGCGTTA 59.908 34.615 0.00 0.00 39.66 3.18
17 18 5.106475 TGTTGTCTAAACTTGAAAGTGCGTT 60.106 36.000 0.00 0.00 39.66 4.84
18 19 4.393680 TGTTGTCTAAACTTGAAAGTGCGT 59.606 37.500 0.00 0.00 39.66 5.24
19 20 4.904116 TGTTGTCTAAACTTGAAAGTGCG 58.096 39.130 0.00 0.00 39.66 5.34
20 21 5.621228 CGATGTTGTCTAAACTTGAAAGTGC 59.379 40.000 0.00 0.00 39.66 4.40
21 22 6.628856 CACGATGTTGTCTAAACTTGAAAGTG 59.371 38.462 0.00 0.00 39.66 3.16
22 23 6.315393 ACACGATGTTGTCTAAACTTGAAAGT 59.685 34.615 0.00 0.00 42.04 2.66
23 24 6.715464 ACACGATGTTGTCTAAACTTGAAAG 58.285 36.000 0.00 0.00 0.00 2.62
24 25 6.671614 ACACGATGTTGTCTAAACTTGAAA 57.328 33.333 0.00 0.00 0.00 2.69
25 26 7.148869 CGATACACGATGTTGTCTAAACTTGAA 60.149 37.037 0.00 0.00 45.77 2.69
26 27 6.307077 CGATACACGATGTTGTCTAAACTTGA 59.693 38.462 0.00 0.00 45.77 3.02
27 28 6.307077 TCGATACACGATGTTGTCTAAACTTG 59.693 38.462 0.00 0.00 46.45 3.16
28 29 6.384224 TCGATACACGATGTTGTCTAAACTT 58.616 36.000 0.00 0.00 46.45 2.66
43 44 2.307929 CCGCTTCATAGTCGATACACG 58.692 52.381 0.00 0.00 44.09 4.49
77 78 9.458374 AAGTTCACACAAAATAAATAAGAACGG 57.542 29.630 0.00 0.00 38.21 4.44
87 88 8.275015 TCAGACAGAAAGTTCACACAAAATAA 57.725 30.769 0.00 0.00 0.00 1.40
88 89 7.857734 TCAGACAGAAAGTTCACACAAAATA 57.142 32.000 0.00 0.00 0.00 1.40
89 90 6.757897 TCAGACAGAAAGTTCACACAAAAT 57.242 33.333 0.00 0.00 0.00 1.82
90 91 6.567687 TTCAGACAGAAAGTTCACACAAAA 57.432 33.333 0.00 0.00 32.05 2.44
91 92 6.567687 TTTCAGACAGAAAGTTCACACAAA 57.432 33.333 0.00 0.00 41.17 2.83
115 116 1.569479 GACCTCGAGCCAAGTGCAAC 61.569 60.000 6.99 0.00 44.83 4.17
116 117 1.301716 GACCTCGAGCCAAGTGCAA 60.302 57.895 6.99 0.00 44.83 4.08
117 118 2.343758 GACCTCGAGCCAAGTGCA 59.656 61.111 6.99 0.00 44.83 4.57
118 119 2.435059 GGACCTCGAGCCAAGTGC 60.435 66.667 6.99 0.66 41.71 4.40
119 120 0.460987 GATGGACCTCGAGCCAAGTG 60.461 60.000 14.69 0.00 37.78 3.16
120 121 1.901085 GATGGACCTCGAGCCAAGT 59.099 57.895 14.69 3.90 37.78 3.16
121 122 1.227089 CGATGGACCTCGAGCCAAG 60.227 63.158 14.69 9.01 41.12 3.61
122 123 1.541310 AACGATGGACCTCGAGCCAA 61.541 55.000 14.69 0.00 41.12 4.52
123 124 1.541310 AAACGATGGACCTCGAGCCA 61.541 55.000 13.33 13.33 41.12 4.75
124 125 0.391263 AAAACGATGGACCTCGAGCC 60.391 55.000 6.99 4.33 41.12 4.70
125 126 1.000145 GAAAACGATGGACCTCGAGC 59.000 55.000 6.99 0.00 41.12 5.03
126 127 1.135489 TCGAAAACGATGGACCTCGAG 60.135 52.381 16.88 5.13 41.12 4.04
127 128 0.883153 TCGAAAACGATGGACCTCGA 59.117 50.000 16.88 7.77 41.12 4.04
128 129 0.989890 GTCGAAAACGATGGACCTCG 59.010 55.000 10.59 10.59 44.14 4.63
139 140 2.426261 GCGCAACCCGTCGAAAAC 60.426 61.111 0.30 0.00 39.71 2.43
140 141 4.003011 CGCGCAACCCGTCGAAAA 62.003 61.111 8.75 0.00 38.23 2.29
148 149 3.131478 ATAACCAGCGCGCAACCC 61.131 61.111 35.10 2.51 0.00 4.11
149 150 2.100216 CATAACCAGCGCGCAACC 59.900 61.111 35.10 2.98 0.00 3.77
150 151 1.226018 GACATAACCAGCGCGCAAC 60.226 57.895 35.10 3.43 0.00 4.17
151 152 0.108567 TAGACATAACCAGCGCGCAA 60.109 50.000 35.10 13.22 0.00 4.85
152 153 0.104120 ATAGACATAACCAGCGCGCA 59.896 50.000 35.10 13.06 0.00 6.09
153 154 1.217882 AATAGACATAACCAGCGCGC 58.782 50.000 26.66 26.66 0.00 6.86
154 155 3.546020 CCAAAATAGACATAACCAGCGCG 60.546 47.826 0.00 0.00 0.00 6.86
155 156 3.792124 GCCAAAATAGACATAACCAGCGC 60.792 47.826 0.00 0.00 0.00 5.92
156 157 3.546020 CGCCAAAATAGACATAACCAGCG 60.546 47.826 0.00 0.00 0.00 5.18
157 158 3.243068 CCGCCAAAATAGACATAACCAGC 60.243 47.826 0.00 0.00 0.00 4.85
158 159 3.315191 CCCGCCAAAATAGACATAACCAG 59.685 47.826 0.00 0.00 0.00 4.00
159 160 3.054287 TCCCGCCAAAATAGACATAACCA 60.054 43.478 0.00 0.00 0.00 3.67
160 161 3.547746 TCCCGCCAAAATAGACATAACC 58.452 45.455 0.00 0.00 0.00 2.85
161 162 3.564225 CCTCCCGCCAAAATAGACATAAC 59.436 47.826 0.00 0.00 0.00 1.89
162 163 3.201266 ACCTCCCGCCAAAATAGACATAA 59.799 43.478 0.00 0.00 0.00 1.90
163 164 2.775384 ACCTCCCGCCAAAATAGACATA 59.225 45.455 0.00 0.00 0.00 2.29
164 165 1.564348 ACCTCCCGCCAAAATAGACAT 59.436 47.619 0.00 0.00 0.00 3.06
165 166 0.988832 ACCTCCCGCCAAAATAGACA 59.011 50.000 0.00 0.00 0.00 3.41
166 167 2.014857 GAACCTCCCGCCAAAATAGAC 58.985 52.381 0.00 0.00 0.00 2.59
167 168 1.064979 GGAACCTCCCGCCAAAATAGA 60.065 52.381 0.00 0.00 0.00 1.98
168 169 1.064685 AGGAACCTCCCGCCAAAATAG 60.065 52.381 0.00 0.00 37.19 1.73
169 170 0.996583 AGGAACCTCCCGCCAAAATA 59.003 50.000 0.00 0.00 37.19 1.40
170 171 0.114364 AAGGAACCTCCCGCCAAAAT 59.886 50.000 0.00 0.00 37.19 1.82
171 172 0.825840 CAAGGAACCTCCCGCCAAAA 60.826 55.000 0.00 0.00 37.19 2.44
172 173 1.228429 CAAGGAACCTCCCGCCAAA 60.228 57.895 0.00 0.00 37.19 3.28
173 174 2.434331 CAAGGAACCTCCCGCCAA 59.566 61.111 0.00 0.00 37.19 4.52
174 175 2.852075 ACAAGGAACCTCCCGCCA 60.852 61.111 0.00 0.00 37.19 5.69
175 176 2.359975 CACAAGGAACCTCCCGCC 60.360 66.667 0.00 0.00 37.19 6.13
176 177 1.966451 CACACAAGGAACCTCCCGC 60.966 63.158 0.00 0.00 37.19 6.13
177 178 0.602905 GACACACAAGGAACCTCCCG 60.603 60.000 0.00 0.00 37.19 5.14
178 179 0.602905 CGACACACAAGGAACCTCCC 60.603 60.000 0.00 0.00 37.19 4.30
179 180 0.391597 TCGACACACAAGGAACCTCC 59.608 55.000 0.00 0.00 36.58 4.30
180 181 1.605712 CCTCGACACACAAGGAACCTC 60.606 57.143 0.00 0.00 31.44 3.85
181 182 0.393077 CCTCGACACACAAGGAACCT 59.607 55.000 0.00 0.00 31.44 3.50
182 183 0.602905 CCCTCGACACACAAGGAACC 60.603 60.000 0.00 0.00 31.44 3.62
183 184 0.391597 TCCCTCGACACACAAGGAAC 59.608 55.000 0.00 0.00 31.44 3.62
184 185 1.348064 ATCCCTCGACACACAAGGAA 58.652 50.000 0.00 0.00 31.44 3.36
185 186 1.001974 CAATCCCTCGACACACAAGGA 59.998 52.381 0.00 0.00 31.44 3.36
186 187 1.270839 ACAATCCCTCGACACACAAGG 60.271 52.381 0.00 0.00 0.00 3.61
187 188 2.069273 GACAATCCCTCGACACACAAG 58.931 52.381 0.00 0.00 0.00 3.16
188 189 1.270625 GGACAATCCCTCGACACACAA 60.271 52.381 0.00 0.00 0.00 3.33
189 190 0.320374 GGACAATCCCTCGACACACA 59.680 55.000 0.00 0.00 0.00 3.72
190 191 0.736325 CGGACAATCCCTCGACACAC 60.736 60.000 0.00 0.00 31.13 3.82
191 192 1.183030 ACGGACAATCCCTCGACACA 61.183 55.000 0.00 0.00 31.13 3.72
192 193 0.037605 AACGGACAATCCCTCGACAC 60.038 55.000 0.00 0.00 31.13 3.67
193 194 0.037697 CAACGGACAATCCCTCGACA 60.038 55.000 0.00 0.00 31.13 4.35
194 195 0.739813 CCAACGGACAATCCCTCGAC 60.740 60.000 0.00 0.00 31.13 4.20
195 196 1.189524 ACCAACGGACAATCCCTCGA 61.190 55.000 0.00 0.00 31.13 4.04
196 197 0.321298 AACCAACGGACAATCCCTCG 60.321 55.000 0.00 0.00 31.13 4.63
197 198 1.165270 CAACCAACGGACAATCCCTC 58.835 55.000 0.00 0.00 31.13 4.30
198 199 0.476771 ACAACCAACGGACAATCCCT 59.523 50.000 0.00 0.00 31.13 4.20
199 200 0.879090 GACAACCAACGGACAATCCC 59.121 55.000 0.00 0.00 31.13 3.85
200 201 0.515564 CGACAACCAACGGACAATCC 59.484 55.000 0.00 0.00 0.00 3.01
201 202 1.223187 ACGACAACCAACGGACAATC 58.777 50.000 0.00 0.00 0.00 2.67
202 203 1.670791 AACGACAACCAACGGACAAT 58.329 45.000 0.00 0.00 0.00 2.71
203 204 1.932511 GTAACGACAACCAACGGACAA 59.067 47.619 0.00 0.00 0.00 3.18
204 205 1.569708 GTAACGACAACCAACGGACA 58.430 50.000 0.00 0.00 0.00 4.02
205 206 0.861185 GGTAACGACAACCAACGGAC 59.139 55.000 0.00 0.00 36.96 4.79
206 207 0.249826 GGGTAACGACAACCAACGGA 60.250 55.000 0.00 0.00 38.87 4.69
207 208 1.229975 GGGGTAACGACAACCAACGG 61.230 60.000 0.00 0.00 38.87 4.44
208 209 0.532417 TGGGGTAACGACAACCAACG 60.532 55.000 0.00 0.00 38.87 4.10
209 210 1.538075 CATGGGGTAACGACAACCAAC 59.462 52.381 0.00 0.00 37.58 3.77
210 211 1.143277 ACATGGGGTAACGACAACCAA 59.857 47.619 0.00 0.00 37.58 3.67
211 212 0.766131 ACATGGGGTAACGACAACCA 59.234 50.000 0.00 0.00 38.87 3.67
212 213 1.808343 GAACATGGGGTAACGACAACC 59.192 52.381 0.00 0.00 36.19 3.77
213 214 2.482721 CTGAACATGGGGTAACGACAAC 59.517 50.000 0.00 0.00 37.60 3.32
214 215 2.551287 CCTGAACATGGGGTAACGACAA 60.551 50.000 0.00 0.00 37.60 3.18
215 216 1.002659 CCTGAACATGGGGTAACGACA 59.997 52.381 0.00 0.00 37.60 4.35
216 217 1.002773 ACCTGAACATGGGGTAACGAC 59.997 52.381 0.00 0.00 37.60 4.34
217 218 1.354101 ACCTGAACATGGGGTAACGA 58.646 50.000 0.00 0.00 37.60 3.85
218 219 2.194201 AACCTGAACATGGGGTAACG 57.806 50.000 0.00 0.00 32.50 3.18
219 220 3.004862 CGTAACCTGAACATGGGGTAAC 58.995 50.000 0.00 0.00 32.50 2.50
220 221 2.638855 ACGTAACCTGAACATGGGGTAA 59.361 45.455 0.00 0.00 32.50 2.85
221 222 2.027929 CACGTAACCTGAACATGGGGTA 60.028 50.000 0.00 0.00 32.50 3.69
222 223 1.061546 ACGTAACCTGAACATGGGGT 58.938 50.000 0.00 0.00 34.47 4.95
223 224 1.271163 ACACGTAACCTGAACATGGGG 60.271 52.381 0.00 0.00 0.00 4.96
224 225 2.178912 ACACGTAACCTGAACATGGG 57.821 50.000 0.00 0.00 0.00 4.00
225 226 3.921677 AGTACACGTAACCTGAACATGG 58.078 45.455 0.00 0.00 0.00 3.66
226 227 5.706916 AGTAGTACACGTAACCTGAACATG 58.293 41.667 2.52 0.00 0.00 3.21
227 228 5.391310 CGAGTAGTACACGTAACCTGAACAT 60.391 44.000 11.42 0.00 0.00 2.71
228 229 4.083855 CGAGTAGTACACGTAACCTGAACA 60.084 45.833 11.42 0.00 0.00 3.18
229 230 4.083802 ACGAGTAGTACACGTAACCTGAAC 60.084 45.833 21.77 0.00 43.15 3.18
230 231 4.065088 ACGAGTAGTACACGTAACCTGAA 58.935 43.478 21.77 0.00 43.15 3.02
231 232 3.433274 CACGAGTAGTACACGTAACCTGA 59.567 47.826 22.45 0.00 43.11 3.86
232 233 3.187227 ACACGAGTAGTACACGTAACCTG 59.813 47.826 22.45 13.75 43.11 4.00
233 234 3.403038 ACACGAGTAGTACACGTAACCT 58.597 45.455 22.45 5.95 43.11 3.50
234 235 3.813529 ACACGAGTAGTACACGTAACC 57.186 47.619 22.45 0.00 43.11 2.85
235 236 6.249260 CCAATTACACGAGTAGTACACGTAAC 59.751 42.308 22.45 0.00 43.11 2.50
236 237 6.314018 CCAATTACACGAGTAGTACACGTAA 58.686 40.000 22.45 15.68 43.11 3.18
237 238 5.163764 CCCAATTACACGAGTAGTACACGTA 60.164 44.000 22.45 10.38 43.11 3.57
238 239 4.379813 CCCAATTACACGAGTAGTACACGT 60.380 45.833 18.32 18.32 45.67 4.49
239 240 4.100529 CCCAATTACACGAGTAGTACACG 58.899 47.826 17.04 17.04 38.15 4.49
240 241 5.124457 TCTCCCAATTACACGAGTAGTACAC 59.876 44.000 2.52 0.00 0.00 2.90
241 242 5.255687 TCTCCCAATTACACGAGTAGTACA 58.744 41.667 2.52 0.00 0.00 2.90
242 243 5.824904 TCTCCCAATTACACGAGTAGTAC 57.175 43.478 0.00 0.00 0.00 2.73
243 244 7.414222 AAATCTCCCAATTACACGAGTAGTA 57.586 36.000 0.00 0.00 0.00 1.82
244 245 5.934402 AATCTCCCAATTACACGAGTAGT 57.066 39.130 0.00 0.00 0.00 2.73
245 246 7.224167 GGTAAAATCTCCCAATTACACGAGTAG 59.776 40.741 0.00 0.00 31.46 2.57
246 247 7.043565 GGTAAAATCTCCCAATTACACGAGTA 58.956 38.462 0.00 0.00 31.46 2.59
247 248 5.878669 GGTAAAATCTCCCAATTACACGAGT 59.121 40.000 0.00 0.00 31.46 4.18
248 249 5.006358 CGGTAAAATCTCCCAATTACACGAG 59.994 44.000 0.00 0.00 31.46 4.18
249 250 4.871557 CGGTAAAATCTCCCAATTACACGA 59.128 41.667 0.00 0.00 31.46 4.35
250 251 4.034742 CCGGTAAAATCTCCCAATTACACG 59.965 45.833 0.00 0.00 31.46 4.49
251 252 4.945543 ACCGGTAAAATCTCCCAATTACAC 59.054 41.667 4.49 0.00 31.46 2.90
252 253 4.944930 CACCGGTAAAATCTCCCAATTACA 59.055 41.667 6.87 0.00 31.46 2.41
253 254 4.337274 CCACCGGTAAAATCTCCCAATTAC 59.663 45.833 6.87 0.00 0.00 1.89
254 255 4.227754 TCCACCGGTAAAATCTCCCAATTA 59.772 41.667 6.87 0.00 0.00 1.40
255 256 3.010808 TCCACCGGTAAAATCTCCCAATT 59.989 43.478 6.87 0.00 0.00 2.32
256 257 2.578940 TCCACCGGTAAAATCTCCCAAT 59.421 45.455 6.87 0.00 0.00 3.16
257 258 1.986631 TCCACCGGTAAAATCTCCCAA 59.013 47.619 6.87 0.00 0.00 4.12
258 259 1.659022 TCCACCGGTAAAATCTCCCA 58.341 50.000 6.87 0.00 0.00 4.37
259 260 2.793288 TTCCACCGGTAAAATCTCCC 57.207 50.000 6.87 0.00 0.00 4.30
260 261 3.311596 CGAATTCCACCGGTAAAATCTCC 59.688 47.826 6.87 2.97 0.00 3.71
261 262 4.186159 TCGAATTCCACCGGTAAAATCTC 58.814 43.478 6.87 9.32 0.00 2.75
262 263 4.210724 TCGAATTCCACCGGTAAAATCT 57.789 40.909 6.87 1.56 0.00 2.40
263 264 4.201881 CCTTCGAATTCCACCGGTAAAATC 60.202 45.833 6.87 6.83 0.00 2.17
264 265 3.692593 CCTTCGAATTCCACCGGTAAAAT 59.307 43.478 6.87 7.34 0.00 1.82
265 266 3.075884 CCTTCGAATTCCACCGGTAAAA 58.924 45.455 6.87 4.79 0.00 1.52
266 267 2.302445 TCCTTCGAATTCCACCGGTAAA 59.698 45.455 6.87 5.23 0.00 2.01
267 268 1.901159 TCCTTCGAATTCCACCGGTAA 59.099 47.619 6.87 0.00 0.00 2.85
268 269 1.479323 CTCCTTCGAATTCCACCGGTA 59.521 52.381 6.87 0.00 0.00 4.02
269 270 0.249398 CTCCTTCGAATTCCACCGGT 59.751 55.000 0.00 0.00 0.00 5.28
270 271 0.249398 ACTCCTTCGAATTCCACCGG 59.751 55.000 0.00 0.00 0.00 5.28
271 272 2.000447 GAACTCCTTCGAATTCCACCG 59.000 52.381 0.00 0.00 0.00 4.94
272 273 3.053831 TGAACTCCTTCGAATTCCACC 57.946 47.619 0.00 0.00 0.00 4.61
273 274 4.672801 GCAATGAACTCCTTCGAATTCCAC 60.673 45.833 0.00 0.00 0.00 4.02
274 275 3.440173 GCAATGAACTCCTTCGAATTCCA 59.560 43.478 0.00 0.00 0.00 3.53
275 276 3.440173 TGCAATGAACTCCTTCGAATTCC 59.560 43.478 0.00 0.00 0.00 3.01
276 277 4.685169 TGCAATGAACTCCTTCGAATTC 57.315 40.909 0.00 0.00 0.00 2.17
277 278 4.201851 CGATGCAATGAACTCCTTCGAATT 60.202 41.667 0.00 0.00 0.00 2.17
278 279 3.310774 CGATGCAATGAACTCCTTCGAAT 59.689 43.478 0.00 0.00 0.00 3.34
279 280 2.672874 CGATGCAATGAACTCCTTCGAA 59.327 45.455 0.00 0.00 0.00 3.71
280 281 2.270923 CGATGCAATGAACTCCTTCGA 58.729 47.619 0.00 0.00 0.00 3.71
281 282 2.002586 ACGATGCAATGAACTCCTTCG 58.997 47.619 0.00 0.00 0.00 3.79
282 283 5.545658 TTTACGATGCAATGAACTCCTTC 57.454 39.130 0.00 0.00 0.00 3.46
283 284 5.705441 TCTTTTACGATGCAATGAACTCCTT 59.295 36.000 0.00 0.00 0.00 3.36
284 285 5.245531 TCTTTTACGATGCAATGAACTCCT 58.754 37.500 0.00 0.00 0.00 3.69
285 286 5.545658 TCTTTTACGATGCAATGAACTCC 57.454 39.130 0.00 0.00 0.00 3.85
286 287 6.470235 CCAATCTTTTACGATGCAATGAACTC 59.530 38.462 0.00 0.00 0.00 3.01
287 288 6.324819 CCAATCTTTTACGATGCAATGAACT 58.675 36.000 0.00 0.00 0.00 3.01
288 289 5.516339 CCCAATCTTTTACGATGCAATGAAC 59.484 40.000 0.00 0.00 0.00 3.18
289 290 5.649557 CCCAATCTTTTACGATGCAATGAA 58.350 37.500 0.00 0.00 0.00 2.57
290 291 4.439974 GCCCAATCTTTTACGATGCAATGA 60.440 41.667 0.00 0.00 0.00 2.57
291 292 3.798337 GCCCAATCTTTTACGATGCAATG 59.202 43.478 0.00 0.00 0.00 2.82
292 293 3.181476 GGCCCAATCTTTTACGATGCAAT 60.181 43.478 0.00 0.00 0.00 3.56
293 294 2.165437 GGCCCAATCTTTTACGATGCAA 59.835 45.455 0.00 0.00 0.00 4.08
294 295 1.748493 GGCCCAATCTTTTACGATGCA 59.252 47.619 0.00 0.00 0.00 3.96
295 296 1.748493 TGGCCCAATCTTTTACGATGC 59.252 47.619 0.00 0.00 0.00 3.91
296 297 4.448537 TTTGGCCCAATCTTTTACGATG 57.551 40.909 0.00 0.00 0.00 3.84
297 298 4.709397 TGATTTGGCCCAATCTTTTACGAT 59.291 37.500 25.37 0.00 0.00 3.73
298 299 4.082845 TGATTTGGCCCAATCTTTTACGA 58.917 39.130 25.37 5.46 0.00 3.43
299 300 4.448537 TGATTTGGCCCAATCTTTTACG 57.551 40.909 25.37 0.00 0.00 3.18
300 301 5.043248 CGATGATTTGGCCCAATCTTTTAC 58.957 41.667 25.37 13.32 0.00 2.01
301 302 4.099266 CCGATGATTTGGCCCAATCTTTTA 59.901 41.667 25.37 9.79 0.00 1.52
302 303 3.118665 CCGATGATTTGGCCCAATCTTTT 60.119 43.478 25.37 13.36 0.00 2.27
303 304 2.431782 CCGATGATTTGGCCCAATCTTT 59.568 45.455 25.37 15.45 0.00 2.52
304 305 2.034124 CCGATGATTTGGCCCAATCTT 58.966 47.619 25.37 20.53 0.00 2.40
305 306 1.696063 CCGATGATTTGGCCCAATCT 58.304 50.000 25.37 13.92 0.00 2.40
306 307 0.032540 GCCGATGATTTGGCCCAATC 59.967 55.000 20.18 20.18 45.58 2.67
307 308 2.126951 GCCGATGATTTGGCCCAAT 58.873 52.632 0.72 0.72 45.58 3.16
308 309 3.614806 GCCGATGATTTGGCCCAA 58.385 55.556 0.00 0.00 45.58 4.12
313 314 1.024046 TGGACGTGCCGATGATTTGG 61.024 55.000 4.04 0.00 40.66 3.28
314 315 0.801872 TTGGACGTGCCGATGATTTG 59.198 50.000 4.04 0.00 40.66 2.32
315 316 1.086696 CTTGGACGTGCCGATGATTT 58.913 50.000 4.04 0.00 40.66 2.17
316 317 0.744414 CCTTGGACGTGCCGATGATT 60.744 55.000 4.04 0.00 40.66 2.57
317 318 1.153369 CCTTGGACGTGCCGATGAT 60.153 57.895 4.04 0.00 40.66 2.45
318 319 2.264480 CCTTGGACGTGCCGATGA 59.736 61.111 4.04 0.00 40.66 2.92
319 320 2.047274 ACCTTGGACGTGCCGATG 60.047 61.111 4.04 0.25 40.66 3.84
320 321 2.264794 GACCTTGGACGTGCCGAT 59.735 61.111 4.04 0.00 40.66 4.18
321 322 4.351938 CGACCTTGGACGTGCCGA 62.352 66.667 4.04 0.00 40.66 5.54
322 323 4.657824 ACGACCTTGGACGTGCCG 62.658 66.667 15.31 2.57 41.17 5.69
334 335 3.490890 GCTGATGAAGGCACGACC 58.509 61.111 0.00 0.00 39.61 4.79
341 342 0.682209 CTGTTGGGGGCTGATGAAGG 60.682 60.000 0.00 0.00 0.00 3.46
342 343 0.038744 ACTGTTGGGGGCTGATGAAG 59.961 55.000 0.00 0.00 0.00 3.02
343 344 0.482446 AACTGTTGGGGGCTGATGAA 59.518 50.000 0.00 0.00 0.00 2.57
344 345 1.367346 TAACTGTTGGGGGCTGATGA 58.633 50.000 2.69 0.00 0.00 2.92
345 346 2.026641 CATAACTGTTGGGGGCTGATG 58.973 52.381 2.69 0.00 0.00 3.07
346 347 1.686115 GCATAACTGTTGGGGGCTGAT 60.686 52.381 2.69 0.00 0.00 2.90
347 348 0.323360 GCATAACTGTTGGGGGCTGA 60.323 55.000 2.69 0.00 0.00 4.26
348 349 0.323725 AGCATAACTGTTGGGGGCTG 60.324 55.000 2.69 0.00 0.00 4.85
349 350 0.034089 GAGCATAACTGTTGGGGGCT 60.034 55.000 2.69 6.54 0.00 5.19
350 351 0.323360 TGAGCATAACTGTTGGGGGC 60.323 55.000 2.69 1.75 0.00 5.80
351 352 2.026641 CATGAGCATAACTGTTGGGGG 58.973 52.381 2.69 0.00 0.00 5.40
400 401 4.340950 CGGGGCAATCTATTATTGTGGTTT 59.659 41.667 0.00 0.00 0.00 3.27
415 416 2.438021 TGAGCTTATTAGTCGGGGCAAT 59.562 45.455 0.00 0.00 0.00 3.56
460 462 6.014413 TGTTCATGTTGGATGACCATGATTTT 60.014 34.615 0.00 0.00 46.34 1.82
517 519 5.652744 AGCGGAAATGTTTATAGCTAACG 57.347 39.130 0.00 0.00 0.00 3.18
518 520 8.139521 ACTAAGCGGAAATGTTTATAGCTAAC 57.860 34.615 0.00 0.00 32.75 2.34
698 711 8.735692 AATGTTCATGGATTTCAAAAACTGTT 57.264 26.923 0.00 0.00 0.00 3.16
729 743 5.947503 TTTGAAAAATGTTTGCGACTCTG 57.052 34.783 0.00 0.00 0.00 3.35
733 747 6.034470 TCTCTGTTTTGAAAAATGTTTGCGAC 59.966 34.615 0.00 0.00 0.00 5.19
736 750 9.558648 AAATTCTCTGTTTTGAAAAATGTTTGC 57.441 25.926 0.00 0.00 0.00 3.68
851 885 8.899771 TCATTTTTCTCGTTTCCTTTTTAGAGT 58.100 29.630 0.00 0.00 0.00 3.24
852 886 9.730420 TTCATTTTTCTCGTTTCCTTTTTAGAG 57.270 29.630 0.00 0.00 0.00 2.43
853 887 9.730420 CTTCATTTTTCTCGTTTCCTTTTTAGA 57.270 29.630 0.00 0.00 0.00 2.10
854 888 9.730420 TCTTCATTTTTCTCGTTTCCTTTTTAG 57.270 29.630 0.00 0.00 0.00 1.85
867 901 6.128418 CGTCCCTTCTCTTCTTCATTTTTCTC 60.128 42.308 0.00 0.00 0.00 2.87
869 903 5.106515 CCGTCCCTTCTCTTCTTCATTTTTC 60.107 44.000 0.00 0.00 0.00 2.29
897 931 1.000827 CAAACAGCAAACGCATACCCA 60.001 47.619 0.00 0.00 0.00 4.51
898 932 1.696988 CAAACAGCAAACGCATACCC 58.303 50.000 0.00 0.00 0.00 3.69
899 933 1.059942 GCAAACAGCAAACGCATACC 58.940 50.000 0.00 0.00 44.79 2.73
923 974 0.550914 AAGAGGCAGTGTGGTGGAAA 59.449 50.000 0.00 0.00 0.00 3.13
931 982 1.674057 CCGGAAGAAGAGGCAGTGT 59.326 57.895 0.00 0.00 0.00 3.55
951 1036 1.014564 GGAAGACGAGCGAGGGTTTG 61.015 60.000 0.00 0.00 0.00 2.93
962 1055 2.564975 GCGAACGGAGGAAGACGA 59.435 61.111 0.00 0.00 0.00 4.20
1175 1275 0.824109 TGTCCATACCTCGGCTTCTG 59.176 55.000 0.00 0.00 0.00 3.02
1176 1276 1.414181 CATGTCCATACCTCGGCTTCT 59.586 52.381 0.00 0.00 0.00 2.85
1178 1278 0.469917 CCATGTCCATACCTCGGCTT 59.530 55.000 0.00 0.00 0.00 4.35
1228 1328 3.928727 TTCAGCTCAAATTCAAGCAGG 57.071 42.857 12.89 6.22 41.06 4.85
1237 1337 2.039084 AGACTCCGGTTTCAGCTCAAAT 59.961 45.455 0.00 0.00 0.00 2.32
1349 1456 5.939447 TCATGGCATCACATACAGGAATTA 58.061 37.500 0.00 0.00 0.00 1.40
1371 1479 1.808411 TCGTCTGCTGGAACCAAATC 58.192 50.000 0.00 0.00 0.00 2.17
1377 1485 0.874390 TGCAATTCGTCTGCTGGAAC 59.126 50.000 7.45 0.00 40.59 3.62
1413 1521 3.950397 TCATAAACAGAGGTGGCGATTT 58.050 40.909 0.00 0.00 0.00 2.17
1449 1557 3.882888 TCAAACTTAGAGTTGCCCAACAG 59.117 43.478 13.08 4.68 43.47 3.16
1451 1559 5.222631 CAATCAAACTTAGAGTTGCCCAAC 58.777 41.667 3.01 3.01 38.66 3.77
1543 1652 0.247736 ACCTGCATCTCCTGTTCGTC 59.752 55.000 0.00 0.00 0.00 4.20
1729 1847 4.323417 ACACCATAAGCAACGAGAATGAA 58.677 39.130 0.00 0.00 0.00 2.57
1964 2620 4.509970 GGGTAATCAAACAAACAAGCAACC 59.490 41.667 0.00 0.00 0.00 3.77
2044 2703 4.384208 CCACGAAGGGAATAGATGAACCTT 60.384 45.833 0.00 0.00 43.79 3.50
2045 2704 3.134804 CCACGAAGGGAATAGATGAACCT 59.865 47.826 0.00 0.00 0.00 3.50
2046 2705 3.118371 ACCACGAAGGGAATAGATGAACC 60.118 47.826 0.00 0.00 43.89 3.62
2151 2829 3.134574 TCAACAATTAACTCCTGCCGT 57.865 42.857 0.00 0.00 0.00 5.68
2532 3483 3.882888 ACTTCAGCCACGATTCTCAAAAA 59.117 39.130 0.00 0.00 0.00 1.94
2533 3484 3.476552 ACTTCAGCCACGATTCTCAAAA 58.523 40.909 0.00 0.00 0.00 2.44
2535 3486 2.839486 ACTTCAGCCACGATTCTCAA 57.161 45.000 0.00 0.00 0.00 3.02
2536 3487 2.839486 AACTTCAGCCACGATTCTCA 57.161 45.000 0.00 0.00 0.00 3.27
2537 3488 5.122396 ACAAATAACTTCAGCCACGATTCTC 59.878 40.000 0.00 0.00 0.00 2.87
2538 3489 5.003804 ACAAATAACTTCAGCCACGATTCT 58.996 37.500 0.00 0.00 0.00 2.40
2539 3490 5.296813 ACAAATAACTTCAGCCACGATTC 57.703 39.130 0.00 0.00 0.00 2.52
2541 3492 5.705609 AAACAAATAACTTCAGCCACGAT 57.294 34.783 0.00 0.00 0.00 3.73
2543 3660 5.997385 ACTAAACAAATAACTTCAGCCACG 58.003 37.500 0.00 0.00 0.00 4.94
2673 3792 6.133356 TCAACAATACCCTTTTCCAGAACTT 58.867 36.000 0.00 0.00 0.00 2.66
2794 4172 5.022282 ACATTTCACCAACAAAGGAAAGG 57.978 39.130 0.00 0.00 37.15 3.11
2907 4440 2.857592 TCTAAGGCGTATGTCCGTTC 57.142 50.000 0.00 0.00 0.00 3.95
2910 4443 3.050619 GTTCATCTAAGGCGTATGTCCG 58.949 50.000 0.00 0.00 0.00 4.79
2922 4455 4.202121 GGCGACACCTGATAGTTCATCTAA 60.202 45.833 0.00 0.00 34.46 2.10
2961 4527 5.803552 AGATCTTTTCTTCTCCACTTCTGG 58.196 41.667 0.00 0.00 39.23 3.86
3133 4702 4.261994 GGCAAAGTTAAAGCAAGTGATCCA 60.262 41.667 0.00 0.00 0.00 3.41
3675 5478 3.365767 GCATTGTCTCTTCAGGTTGCTTC 60.366 47.826 0.00 0.00 0.00 3.86
3682 5492 5.609423 AGCTATAAGCATTGTCTCTTCAGG 58.391 41.667 1.22 0.00 45.56 3.86
4065 9302 5.521735 GTCAGCTACATCATCCAACTTACTG 59.478 44.000 0.00 0.00 0.00 2.74
4451 10061 8.370940 AGGGTATTATGTCTTATGTGACTGATG 58.629 37.037 0.00 0.00 37.79 3.07
4452 10062 8.497910 AGGGTATTATGTCTTATGTGACTGAT 57.502 34.615 0.00 0.00 37.79 2.90
4454 10064 8.204160 TCAAGGGTATTATGTCTTATGTGACTG 58.796 37.037 0.00 0.00 37.79 3.51
4455 10065 8.319057 TCAAGGGTATTATGTCTTATGTGACT 57.681 34.615 0.00 0.00 37.79 3.41
4456 10066 9.209175 GATCAAGGGTATTATGTCTTATGTGAC 57.791 37.037 0.00 0.00 37.47 3.67
4457 10067 8.375506 GGATCAAGGGTATTATGTCTTATGTGA 58.624 37.037 0.00 0.00 0.00 3.58
4458 10068 7.607991 GGGATCAAGGGTATTATGTCTTATGTG 59.392 40.741 0.00 0.00 0.00 3.21
4459 10069 7.294720 TGGGATCAAGGGTATTATGTCTTATGT 59.705 37.037 0.00 0.00 0.00 2.29
4460 10070 7.689299 TGGGATCAAGGGTATTATGTCTTATG 58.311 38.462 0.00 0.00 0.00 1.90
4461 10071 7.888514 TGGGATCAAGGGTATTATGTCTTAT 57.111 36.000 0.00 0.00 0.00 1.73
4462 10072 7.128109 TGTTGGGATCAAGGGTATTATGTCTTA 59.872 37.037 0.00 0.00 32.92 2.10
4463 10073 6.069088 TGTTGGGATCAAGGGTATTATGTCTT 60.069 38.462 0.00 0.00 32.92 3.01
4464 10074 5.431731 TGTTGGGATCAAGGGTATTATGTCT 59.568 40.000 0.00 0.00 32.92 3.41
4465 10075 5.690865 TGTTGGGATCAAGGGTATTATGTC 58.309 41.667 0.00 0.00 32.92 3.06
4472 10082 3.853181 TGGTAATGTTGGGATCAAGGGTA 59.147 43.478 0.00 0.00 32.92 3.69
4477 10087 3.953612 GAGCATGGTAATGTTGGGATCAA 59.046 43.478 0.00 0.00 36.08 2.57
4917 11084 9.551734 CAATCAAGTATCATTCTCCTGATTGTA 57.448 33.333 11.79 0.00 37.13 2.41
5104 11322 3.568430 CCCTACTTGTTTGGGACTGAAAC 59.432 47.826 5.88 0.00 42.76 2.78
5574 11798 2.102578 GTACCTCACCTTAAGCCGGTA 58.897 52.381 1.90 2.14 32.37 4.02
5737 11967 4.978099 ACCTGCTTTTCATCAGAGAAAGA 58.022 39.130 7.54 0.00 38.60 2.52
5754 11984 5.783111 ACCACAAATGAAAGAATAACCTGC 58.217 37.500 0.00 0.00 0.00 4.85
5755 11985 8.661352 AAAACCACAAATGAAAGAATAACCTG 57.339 30.769 0.00 0.00 0.00 4.00
5761 11991 7.657354 GCTCCTAAAAACCACAAATGAAAGAAT 59.343 33.333 0.00 0.00 0.00 2.40
5762 11992 6.983890 GCTCCTAAAAACCACAAATGAAAGAA 59.016 34.615 0.00 0.00 0.00 2.52
5764 11994 6.279882 TGCTCCTAAAAACCACAAATGAAAG 58.720 36.000 0.00 0.00 0.00 2.62
5765 11995 6.227298 TGCTCCTAAAAACCACAAATGAAA 57.773 33.333 0.00 0.00 0.00 2.69
5774 12004 3.756082 ATGGGATGCTCCTAAAAACCA 57.244 42.857 2.79 0.00 36.57 3.67
5775 12005 3.889538 GGTATGGGATGCTCCTAAAAACC 59.110 47.826 2.79 3.50 36.57 3.27
5819 12051 1.901159 CATGAGGTTCCATTGCCCAAA 59.099 47.619 0.00 0.00 0.00 3.28
5853 12085 4.606961 ACAAGGTTAAGTTCATTGCAACG 58.393 39.130 0.00 0.00 31.12 4.10
5854 12086 6.019075 GGAAACAAGGTTAAGTTCATTGCAAC 60.019 38.462 0.00 0.00 31.12 4.17
5855 12087 6.045955 GGAAACAAGGTTAAGTTCATTGCAA 58.954 36.000 0.00 0.00 31.12 4.08
5856 12088 5.127845 TGGAAACAAGGTTAAGTTCATTGCA 59.872 36.000 0.00 0.00 37.44 4.08
5924 12156 5.180304 CAGTATCTGTATCGCTTAGCTCTGA 59.820 44.000 1.76 0.00 0.00 3.27
5925 12157 5.389778 CAGTATCTGTATCGCTTAGCTCTG 58.610 45.833 1.76 0.00 0.00 3.35
5926 12158 4.457603 CCAGTATCTGTATCGCTTAGCTCT 59.542 45.833 1.76 0.00 0.00 4.09
6047 12282 2.249139 ACGGTAGTCCAGCTTCTTCTT 58.751 47.619 0.00 0.00 0.00 2.52
6048 12283 1.926108 ACGGTAGTCCAGCTTCTTCT 58.074 50.000 0.00 0.00 0.00 2.85
6049 12284 2.745515 AACGGTAGTCCAGCTTCTTC 57.254 50.000 0.00 0.00 0.00 2.87
6150 12385 2.163010 TGGTCCGTCTCGAGATGTTTAC 59.837 50.000 28.28 22.22 0.00 2.01
6194 12429 2.744202 CAGCTTGTCGTAGAGGCATTTT 59.256 45.455 0.00 0.00 36.95 1.82
6195 12430 2.028112 TCAGCTTGTCGTAGAGGCATTT 60.028 45.455 0.00 0.00 36.95 2.32
6244 12481 0.323178 ATCTTGGCCCAGCTTGACTG 60.323 55.000 0.00 0.00 46.77 3.51
6257 12494 3.071874 TGGTTTGCAGGTAGATCTTGG 57.928 47.619 0.00 0.00 0.00 3.61
6669 12906 3.931468 CAGAGCAACTTGTATGGAGAGTG 59.069 47.826 0.00 0.00 0.00 3.51
6670 12907 3.834813 TCAGAGCAACTTGTATGGAGAGT 59.165 43.478 0.00 0.00 0.00 3.24
6675 12912 5.181009 TCAGAATCAGAGCAACTTGTATGG 58.819 41.667 0.00 0.00 0.00 2.74
6676 12913 6.732531 TTCAGAATCAGAGCAACTTGTATG 57.267 37.500 0.00 0.00 0.00 2.39
6691 12928 4.406943 GCGAAACCAACTGATTCAGAATC 58.593 43.478 20.33 15.39 38.40 2.52
6779 13025 1.533129 CGCAGCATCACCATTCATGTG 60.533 52.381 0.00 0.00 0.00 3.21
6839 13196 3.028130 TGAACACCAAAGAAAGGAACCC 58.972 45.455 0.00 0.00 0.00 4.11
6866 13223 4.840005 TCCACGTTGCGCACCACA 62.840 61.111 11.12 0.00 0.00 4.17
6878 13235 5.106555 GGCATAATTACATTCCATCTCCACG 60.107 44.000 0.00 0.00 0.00 4.94
6990 13357 2.489971 CACCTTTACAGAACTCGCCAA 58.510 47.619 0.00 0.00 0.00 4.52
6991 13358 1.876416 GCACCTTTACAGAACTCGCCA 60.876 52.381 0.00 0.00 0.00 5.69
7078 13446 0.250727 CCGATTATGGCCAACCGGAT 60.251 55.000 24.87 10.10 39.31 4.18
7081 13449 1.896660 CCCCGATTATGGCCAACCG 60.897 63.158 10.96 11.00 39.70 4.44
7088 13456 1.295792 CAACGTGTCCCCGATTATGG 58.704 55.000 0.00 0.00 0.00 2.74
7090 13458 0.808453 CGCAACGTGTCCCCGATTAT 60.808 55.000 0.00 0.00 0.00 1.28
7091 13459 1.446445 CGCAACGTGTCCCCGATTA 60.446 57.895 0.00 0.00 0.00 1.75
7092 13460 2.740826 CGCAACGTGTCCCCGATT 60.741 61.111 0.00 0.00 0.00 3.34
7093 13461 3.524648 AACGCAACGTGTCCCCGAT 62.525 57.895 0.00 0.00 39.99 4.18
7094 13462 4.224274 AACGCAACGTGTCCCCGA 62.224 61.111 0.00 0.00 39.99 5.14
7095 13463 4.007940 CAACGCAACGTGTCCCCG 62.008 66.667 0.00 0.00 39.99 5.73
7096 13464 1.159098 TAACAACGCAACGTGTCCCC 61.159 55.000 0.00 0.00 39.99 4.81
7097 13465 0.041926 GTAACAACGCAACGTGTCCC 60.042 55.000 0.00 0.00 39.99 4.46
7098 13466 0.041926 GGTAACAACGCAACGTGTCC 60.042 55.000 0.00 0.00 39.99 4.02
7177 13545 0.666577 ACCCGAAGAAGTTTCGAGCG 60.667 55.000 10.54 1.36 43.97 5.03
7253 13621 2.037251 CCCTCTCACTCGAACAAAGGAA 59.963 50.000 2.93 0.00 0.00 3.36
7256 13624 1.270305 TGCCCTCTCACTCGAACAAAG 60.270 52.381 0.00 0.00 0.00 2.77
7257 13625 0.756294 TGCCCTCTCACTCGAACAAA 59.244 50.000 0.00 0.00 0.00 2.83
7258 13626 0.318441 CTGCCCTCTCACTCGAACAA 59.682 55.000 0.00 0.00 0.00 2.83
7259 13627 0.539669 TCTGCCCTCTCACTCGAACA 60.540 55.000 0.00 0.00 0.00 3.18
7260 13628 0.172352 CTCTGCCCTCTCACTCGAAC 59.828 60.000 0.00 0.00 0.00 3.95
7261 13629 0.967887 CCTCTGCCCTCTCACTCGAA 60.968 60.000 0.00 0.00 0.00 3.71
7262 13630 1.379176 CCTCTGCCCTCTCACTCGA 60.379 63.158 0.00 0.00 0.00 4.04
7263 13631 2.422231 CCCTCTGCCCTCTCACTCG 61.422 68.421 0.00 0.00 0.00 4.18
7264 13632 2.730524 GCCCTCTGCCCTCTCACTC 61.731 68.421 0.00 0.00 0.00 3.51
7265 13633 2.686835 GCCCTCTGCCCTCTCACT 60.687 66.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.