Multiple sequence alignment - TraesCS5B01G507800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G507800 chr5B 100.000 2706 0 0 1 2706 673046250 673043545 0.000000e+00 4998
1 TraesCS5B01G507800 chr5B 92.101 595 40 4 2113 2706 615808725 615809313 0.000000e+00 832
2 TraesCS5B01G507800 chr5B 85.000 160 23 1 9 167 63243745 63243904 7.750000e-36 161
3 TraesCS5B01G507800 chr4A 92.928 1103 56 11 893 1981 639025149 639026243 0.000000e+00 1585
4 TraesCS5B01G507800 chr4A 88.255 298 28 6 3 297 639024670 639024963 1.540000e-92 350
5 TraesCS5B01G507800 chr4A 85.492 193 13 6 509 700 639024955 639025133 1.280000e-43 187
6 TraesCS5B01G507800 chr5D 93.666 1042 48 6 946 1980 533114644 533113614 0.000000e+00 1543
7 TraesCS5B01G507800 chr5D 91.429 210 14 3 511 718 533114897 533114690 4.410000e-73 285
8 TraesCS5B01G507800 chr5D 94.675 169 9 0 711 879 211342598 211342430 2.070000e-66 263
9 TraesCS5B01G507800 chr5D 79.866 298 36 12 3 297 533115167 533114891 2.130000e-46 196
10 TraesCS5B01G507800 chr5D 84.293 191 26 3 9 196 26787798 26787609 1.650000e-42 183
11 TraesCS5B01G507800 chr6B 92.667 600 42 2 2109 2706 125076748 125077347 0.000000e+00 863
12 TraesCS5B01G507800 chr6B 92.453 212 14 2 298 508 708624883 708625093 4.380000e-78 302
13 TraesCS5B01G507800 chr6B 81.325 166 31 0 22 187 643168344 643168509 4.700000e-28 135
14 TraesCS5B01G507800 chr7B 91.919 594 46 2 2113 2706 234601396 234600805 0.000000e+00 830
15 TraesCS5B01G507800 chr4B 91.152 599 48 5 2110 2706 666619735 666619140 0.000000e+00 808
16 TraesCS5B01G507800 chr4B 92.019 213 17 0 297 509 49892784 49892572 1.570000e-77 300
17 TraesCS5B01G507800 chrUn 90.955 597 50 3 2112 2706 310310853 310310259 0.000000e+00 800
18 TraesCS5B01G507800 chrUn 90.955 597 50 3 2112 2706 315279526 315280120 0.000000e+00 800
19 TraesCS5B01G507800 chr3B 90.787 597 51 3 2112 2706 754854632 754854038 0.000000e+00 795
20 TraesCS5B01G507800 chr3B 91.324 219 17 2 294 512 36637860 36638076 5.660000e-77 298
21 TraesCS5B01G507800 chr3B 91.667 216 15 2 294 508 62672436 62672649 2.040000e-76 296
22 TraesCS5B01G507800 chr3B 91.589 214 14 3 297 509 633637782 633637572 2.640000e-75 292
23 TraesCS5B01G507800 chr3B 86.449 214 20 7 668 881 642969960 642969756 2.710000e-55 226
24 TraesCS5B01G507800 chr6D 90.909 594 49 4 2113 2706 436422647 436423235 0.000000e+00 793
25 TraesCS5B01G507800 chr6D 93.642 173 11 0 707 879 406391531 406391359 2.670000e-65 259
26 TraesCS5B01G507800 chr1D 90.604 596 51 3 2113 2706 209092213 209092805 0.000000e+00 785
27 TraesCS5B01G507800 chr1D 94.737 171 8 1 709 879 345368848 345368679 5.740000e-67 265
28 TraesCS5B01G507800 chr1D 93.182 176 11 1 704 879 238940206 238940380 9.610000e-65 257
29 TraesCS5B01G507800 chr1A 93.897 213 11 2 298 509 8679582 8679793 1.210000e-83 320
30 TraesCS5B01G507800 chr1A 80.488 205 38 2 18 221 12429848 12430051 3.610000e-34 156
31 TraesCS5B01G507800 chr1B 92.925 212 12 3 298 508 677821034 677820825 3.380000e-79 305
32 TraesCS5B01G507800 chr1B 92.265 181 12 2 701 880 266805918 266806097 3.460000e-64 255
33 TraesCS5B01G507800 chr1B 81.106 217 36 5 11 225 333779186 333778973 4.630000e-38 169
34 TraesCS5B01G507800 chr2B 92.453 212 12 4 299 508 693065597 693065388 1.570000e-77 300
35 TraesCS5B01G507800 chr5A 89.565 230 16 6 293 517 53326514 53326288 4.410000e-73 285
36 TraesCS5B01G507800 chr2D 93.220 177 10 2 711 887 224162139 224161965 2.670000e-65 259
37 TraesCS5B01G507800 chr2D 93.678 174 10 1 714 887 418285008 418284836 2.670000e-65 259
38 TraesCS5B01G507800 chr7D 91.848 184 12 3 698 879 364163401 364163219 1.240000e-63 254
39 TraesCS5B01G507800 chr7D 88.152 211 21 4 671 879 420764349 420764141 5.790000e-62 248
40 TraesCS5B01G507800 chr3D 82.883 222 34 3 9 229 87483820 87483602 2.130000e-46 196
41 TraesCS5B01G507800 chr3D 83.838 198 31 1 11 207 411006304 411006501 1.280000e-43 187
42 TraesCS5B01G507800 chr2A 80.531 226 41 3 9 232 171056289 171056513 1.290000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G507800 chr5B 673043545 673046250 2705 True 4998.000000 4998 100.000000 1 2706 1 chr5B.!!$R1 2705
1 TraesCS5B01G507800 chr5B 615808725 615809313 588 False 832.000000 832 92.101000 2113 2706 1 chr5B.!!$F2 593
2 TraesCS5B01G507800 chr4A 639024670 639026243 1573 False 707.333333 1585 88.891667 3 1981 3 chr4A.!!$F1 1978
3 TraesCS5B01G507800 chr5D 533113614 533115167 1553 True 674.666667 1543 88.320333 3 1980 3 chr5D.!!$R3 1977
4 TraesCS5B01G507800 chr6B 125076748 125077347 599 False 863.000000 863 92.667000 2109 2706 1 chr6B.!!$F1 597
5 TraesCS5B01G507800 chr7B 234600805 234601396 591 True 830.000000 830 91.919000 2113 2706 1 chr7B.!!$R1 593
6 TraesCS5B01G507800 chr4B 666619140 666619735 595 True 808.000000 808 91.152000 2110 2706 1 chr4B.!!$R2 596
7 TraesCS5B01G507800 chrUn 310310259 310310853 594 True 800.000000 800 90.955000 2112 2706 1 chrUn.!!$R1 594
8 TraesCS5B01G507800 chrUn 315279526 315280120 594 False 800.000000 800 90.955000 2112 2706 1 chrUn.!!$F1 594
9 TraesCS5B01G507800 chr3B 754854038 754854632 594 True 795.000000 795 90.787000 2112 2706 1 chr3B.!!$R3 594
10 TraesCS5B01G507800 chr6D 436422647 436423235 588 False 793.000000 793 90.909000 2113 2706 1 chr6D.!!$F1 593
11 TraesCS5B01G507800 chr1D 209092213 209092805 592 False 785.000000 785 90.604000 2113 2706 1 chr1D.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 534 0.036732 TAGAGCAGGTGCAAGTTGGG 59.963 55.0 4.75 0.0 45.16 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2135 0.690762 ACGGGCATGTGTCCTAGTTT 59.309 50.0 1.74 0.0 37.76 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.673767 CCCCCTACCCATATGAGCAT 58.326 55.000 3.65 0.00 0.00 3.79
77 78 1.144969 GATTGACGAACTCGCCACAA 58.855 50.000 0.00 4.54 44.43 3.33
118 119 0.469331 ACGTCTCCTCCCACTGAACA 60.469 55.000 0.00 0.00 0.00 3.18
125 126 1.432514 CTCCCACTGAACACACATCG 58.567 55.000 0.00 0.00 0.00 3.84
149 150 4.759782 CGGGAGGCCTGAAATATATACAG 58.240 47.826 12.00 10.88 29.82 2.74
208 209 2.671963 GAGGGTTGGTTCCACCGC 60.672 66.667 0.00 0.00 42.58 5.68
221 222 1.693062 TCCACCGCAAGTAACCTAACA 59.307 47.619 0.00 0.00 0.00 2.41
226 227 5.172934 CACCGCAAGTAACCTAACAATCTA 58.827 41.667 0.00 0.00 0.00 1.98
300 304 4.443913 AAAAAGAGAGACTAGAGCGGAC 57.556 45.455 0.00 0.00 0.00 4.79
301 305 1.658994 AAGAGAGACTAGAGCGGACG 58.341 55.000 0.00 0.00 0.00 4.79
302 306 0.825410 AGAGAGACTAGAGCGGACGA 59.175 55.000 0.00 0.00 0.00 4.20
303 307 1.202486 AGAGAGACTAGAGCGGACGAG 60.202 57.143 0.00 0.00 0.00 4.18
304 308 0.825410 AGAGACTAGAGCGGACGAGA 59.175 55.000 0.00 0.00 0.00 4.04
305 309 0.932399 GAGACTAGAGCGGACGAGAC 59.068 60.000 0.00 0.00 0.00 3.36
306 310 0.538118 AGACTAGAGCGGACGAGACT 59.462 55.000 0.00 0.00 0.00 3.24
307 311 1.065998 AGACTAGAGCGGACGAGACTT 60.066 52.381 0.00 0.00 0.00 3.01
308 312 1.062880 GACTAGAGCGGACGAGACTTG 59.937 57.143 0.00 0.00 0.00 3.16
309 313 0.248296 CTAGAGCGGACGAGACTTGC 60.248 60.000 0.00 0.00 0.00 4.01
310 314 1.654954 TAGAGCGGACGAGACTTGCC 61.655 60.000 0.00 0.00 0.00 4.52
311 315 2.992114 AGCGGACGAGACTTGCCT 60.992 61.111 0.00 0.00 0.00 4.75
312 316 2.811317 GCGGACGAGACTTGCCTG 60.811 66.667 0.00 0.00 0.00 4.85
313 317 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
314 318 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
315 319 1.004440 GGACGAGACTTGCCTGCTT 60.004 57.895 0.00 0.00 0.00 3.91
316 320 1.016653 GGACGAGACTTGCCTGCTTC 61.017 60.000 0.00 0.00 0.00 3.86
317 321 1.004440 ACGAGACTTGCCTGCTTCC 60.004 57.895 0.00 0.00 0.00 3.46
318 322 1.743252 CGAGACTTGCCTGCTTCCC 60.743 63.158 0.00 0.00 0.00 3.97
319 323 1.682257 GAGACTTGCCTGCTTCCCT 59.318 57.895 0.00 0.00 0.00 4.20
320 324 0.392327 GAGACTTGCCTGCTTCCCTC 60.392 60.000 0.00 0.00 0.00 4.30
321 325 1.743252 GACTTGCCTGCTTCCCTCG 60.743 63.158 0.00 0.00 0.00 4.63
322 326 2.348998 CTTGCCTGCTTCCCTCGT 59.651 61.111 0.00 0.00 0.00 4.18
323 327 2.032528 TTGCCTGCTTCCCTCGTG 59.967 61.111 0.00 0.00 0.00 4.35
324 328 2.738213 CTTGCCTGCTTCCCTCGTGT 62.738 60.000 0.00 0.00 0.00 4.49
325 329 2.743928 GCCTGCTTCCCTCGTGTG 60.744 66.667 0.00 0.00 0.00 3.82
326 330 2.743718 CCTGCTTCCCTCGTGTGT 59.256 61.111 0.00 0.00 0.00 3.72
327 331 1.071471 CCTGCTTCCCTCGTGTGTT 59.929 57.895 0.00 0.00 0.00 3.32
328 332 0.951040 CCTGCTTCCCTCGTGTGTTC 60.951 60.000 0.00 0.00 0.00 3.18
329 333 0.951040 CTGCTTCCCTCGTGTGTTCC 60.951 60.000 0.00 0.00 0.00 3.62
330 334 1.671379 GCTTCCCTCGTGTGTTCCC 60.671 63.158 0.00 0.00 0.00 3.97
331 335 1.752198 CTTCCCTCGTGTGTTCCCA 59.248 57.895 0.00 0.00 0.00 4.37
332 336 0.324943 CTTCCCTCGTGTGTTCCCAT 59.675 55.000 0.00 0.00 0.00 4.00
333 337 0.323629 TTCCCTCGTGTGTTCCCATC 59.676 55.000 0.00 0.00 0.00 3.51
334 338 1.078426 CCCTCGTGTGTTCCCATCC 60.078 63.158 0.00 0.00 0.00 3.51
335 339 1.447838 CCTCGTGTGTTCCCATCCG 60.448 63.158 0.00 0.00 0.00 4.18
336 340 1.292223 CTCGTGTGTTCCCATCCGT 59.708 57.895 0.00 0.00 0.00 4.69
337 341 1.005512 TCGTGTGTTCCCATCCGTG 60.006 57.895 0.00 0.00 0.00 4.94
338 342 2.677003 CGTGTGTTCCCATCCGTGC 61.677 63.158 0.00 0.00 0.00 5.34
339 343 1.302511 GTGTGTTCCCATCCGTGCT 60.303 57.895 0.00 0.00 0.00 4.40
340 344 1.003839 TGTGTTCCCATCCGTGCTC 60.004 57.895 0.00 0.00 0.00 4.26
341 345 1.745489 GTGTTCCCATCCGTGCTCC 60.745 63.158 0.00 0.00 0.00 4.70
342 346 2.124695 GTTCCCATCCGTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
343 347 3.781307 TTCCCATCCGTGCTCCCG 61.781 66.667 0.00 0.00 0.00 5.14
353 357 2.203195 TGCTCCCGCATACATGGC 60.203 61.111 0.00 0.00 42.25 4.40
354 358 2.111878 GCTCCCGCATACATGGCT 59.888 61.111 0.00 0.00 35.78 4.75
355 359 1.526917 GCTCCCGCATACATGGCTT 60.527 57.895 0.00 0.00 35.78 4.35
356 360 1.789078 GCTCCCGCATACATGGCTTG 61.789 60.000 0.00 0.00 35.78 4.01
357 361 0.179048 CTCCCGCATACATGGCTTGA 60.179 55.000 7.45 0.00 0.00 3.02
358 362 0.473755 TCCCGCATACATGGCTTGAT 59.526 50.000 7.45 0.00 0.00 2.57
359 363 1.133823 TCCCGCATACATGGCTTGATT 60.134 47.619 7.45 0.00 0.00 2.57
360 364 1.682854 CCCGCATACATGGCTTGATTT 59.317 47.619 7.45 0.00 0.00 2.17
361 365 2.544277 CCCGCATACATGGCTTGATTTG 60.544 50.000 7.45 3.11 0.00 2.32
362 366 2.358582 CCGCATACATGGCTTGATTTGA 59.641 45.455 7.45 0.00 0.00 2.69
363 367 3.005050 CCGCATACATGGCTTGATTTGAT 59.995 43.478 7.45 0.00 0.00 2.57
364 368 4.500205 CCGCATACATGGCTTGATTTGATT 60.500 41.667 7.45 0.00 0.00 2.57
365 369 4.443063 CGCATACATGGCTTGATTTGATTG 59.557 41.667 7.45 0.00 0.00 2.67
366 370 4.748102 GCATACATGGCTTGATTTGATTGG 59.252 41.667 7.45 0.00 0.00 3.16
367 371 5.452216 GCATACATGGCTTGATTTGATTGGA 60.452 40.000 7.45 0.00 0.00 3.53
368 372 6.575267 CATACATGGCTTGATTTGATTGGAA 58.425 36.000 7.45 0.00 0.00 3.53
369 373 4.824289 ACATGGCTTGATTTGATTGGAAC 58.176 39.130 7.45 0.00 0.00 3.62
370 374 4.283978 ACATGGCTTGATTTGATTGGAACA 59.716 37.500 7.45 0.00 0.00 3.18
384 388 1.198178 TGGAACAAAATAAGACGCGGC 59.802 47.619 12.47 7.86 31.92 6.53
385 389 1.466866 GGAACAAAATAAGACGCGGCC 60.467 52.381 9.25 0.00 0.00 6.13
386 390 0.524414 AACAAAATAAGACGCGGCCC 59.476 50.000 9.25 0.00 0.00 5.80
387 391 1.310216 ACAAAATAAGACGCGGCCCC 61.310 55.000 9.25 0.00 0.00 5.80
388 392 1.001887 AAAATAAGACGCGGCCCCA 60.002 52.632 9.25 0.00 0.00 4.96
389 393 1.310216 AAAATAAGACGCGGCCCCAC 61.310 55.000 9.25 0.00 0.00 4.61
390 394 3.692370 AATAAGACGCGGCCCCACC 62.692 63.158 9.25 0.00 0.00 4.61
398 402 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
399 403 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
400 404 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
401 405 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
402 406 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
403 407 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
404 408 1.342975 CCCCACCCCCTTAAAATCAGG 60.343 57.143 0.00 0.00 0.00 3.86
428 432 7.560796 GGGGGAGATGATTAGATTAGAAAGA 57.439 40.000 0.00 0.00 0.00 2.52
429 433 7.390823 GGGGGAGATGATTAGATTAGAAAGAC 58.609 42.308 0.00 0.00 0.00 3.01
430 434 7.016661 GGGGGAGATGATTAGATTAGAAAGACA 59.983 40.741 0.00 0.00 0.00 3.41
431 435 8.432805 GGGGAGATGATTAGATTAGAAAGACAA 58.567 37.037 0.00 0.00 0.00 3.18
432 436 9.838339 GGGAGATGATTAGATTAGAAAGACAAA 57.162 33.333 0.00 0.00 0.00 2.83
458 462 3.644966 AAAAAGACCGCCATAGGATGA 57.355 42.857 0.00 0.00 34.73 2.92
459 463 3.644966 AAAAGACCGCCATAGGATGAA 57.355 42.857 0.00 0.00 34.73 2.57
460 464 2.918712 AAGACCGCCATAGGATGAAG 57.081 50.000 0.00 0.00 34.73 3.02
461 465 1.794714 AGACCGCCATAGGATGAAGT 58.205 50.000 0.00 0.00 34.73 3.01
462 466 1.414181 AGACCGCCATAGGATGAAGTG 59.586 52.381 0.00 0.00 34.73 3.16
463 467 0.469917 ACCGCCATAGGATGAAGTGG 59.530 55.000 0.00 0.00 34.73 4.00
464 468 0.250467 CCGCCATAGGATGAAGTGGG 60.250 60.000 0.00 0.00 32.35 4.61
465 469 0.758734 CGCCATAGGATGAAGTGGGA 59.241 55.000 0.00 0.00 32.35 4.37
466 470 1.349026 CGCCATAGGATGAAGTGGGAT 59.651 52.381 0.00 0.00 32.35 3.85
467 471 2.613977 CGCCATAGGATGAAGTGGGATC 60.614 54.545 0.00 0.00 32.35 3.36
468 472 2.373169 GCCATAGGATGAAGTGGGATCA 59.627 50.000 0.00 0.00 32.35 2.92
469 473 3.808618 GCCATAGGATGAAGTGGGATCAC 60.809 52.174 0.00 0.00 43.93 3.06
477 481 3.642078 GTGGGATCACGGATGGGA 58.358 61.111 0.00 0.00 33.87 4.37
478 482 1.447643 GTGGGATCACGGATGGGAG 59.552 63.158 0.00 0.00 33.87 4.30
479 483 2.427753 GGGATCACGGATGGGAGC 59.572 66.667 0.00 0.00 0.00 4.70
480 484 2.443394 GGGATCACGGATGGGAGCA 61.443 63.158 0.00 0.00 0.00 4.26
481 485 1.757306 GGATCACGGATGGGAGCAT 59.243 57.895 0.00 0.00 0.00 3.79
482 486 0.604780 GGATCACGGATGGGAGCATG 60.605 60.000 0.00 0.00 0.00 4.06
483 487 0.604780 GATCACGGATGGGAGCATGG 60.605 60.000 0.00 0.00 0.00 3.66
484 488 1.056125 ATCACGGATGGGAGCATGGA 61.056 55.000 0.00 0.00 0.00 3.41
485 489 1.227764 CACGGATGGGAGCATGGAG 60.228 63.158 0.00 0.00 0.00 3.86
486 490 1.383109 ACGGATGGGAGCATGGAGA 60.383 57.895 0.00 0.00 0.00 3.71
487 491 1.370437 CGGATGGGAGCATGGAGAG 59.630 63.158 0.00 0.00 0.00 3.20
488 492 1.759881 GGATGGGAGCATGGAGAGG 59.240 63.158 0.00 0.00 0.00 3.69
489 493 1.759881 GATGGGAGCATGGAGAGGG 59.240 63.158 0.00 0.00 0.00 4.30
490 494 0.765903 GATGGGAGCATGGAGAGGGA 60.766 60.000 0.00 0.00 0.00 4.20
491 495 0.767446 ATGGGAGCATGGAGAGGGAG 60.767 60.000 0.00 0.00 0.00 4.30
492 496 2.817056 GGGAGCATGGAGAGGGAGC 61.817 68.421 0.00 0.00 0.00 4.70
493 497 2.068821 GGAGCATGGAGAGGGAGCA 61.069 63.158 0.00 0.00 0.00 4.26
494 498 1.446791 GAGCATGGAGAGGGAGCAG 59.553 63.158 0.00 0.00 0.00 4.24
495 499 2.042404 GAGCATGGAGAGGGAGCAGG 62.042 65.000 0.00 0.00 0.00 4.85
496 500 2.509916 CATGGAGAGGGAGCAGGC 59.490 66.667 0.00 0.00 0.00 4.85
497 501 2.041762 ATGGAGAGGGAGCAGGCA 59.958 61.111 0.00 0.00 0.00 4.75
498 502 1.617536 ATGGAGAGGGAGCAGGCAA 60.618 57.895 0.00 0.00 0.00 4.52
499 503 1.633915 ATGGAGAGGGAGCAGGCAAG 61.634 60.000 0.00 0.00 0.00 4.01
500 504 2.124778 GAGAGGGAGCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
501 505 3.695747 GAGAGGGAGCAGGCAAGCC 62.696 68.421 2.02 2.02 34.23 4.35
505 509 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
506 510 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
507 511 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
509 513 4.161295 CAGGCAAGCCGGATCCGA 62.161 66.667 35.42 0.00 42.83 4.55
510 514 4.162690 AGGCAAGCCGGATCCGAC 62.163 66.667 35.42 25.11 42.83 4.79
511 515 4.162690 GGCAAGCCGGATCCGACT 62.163 66.667 35.42 27.22 42.83 4.18
512 516 2.792947 GGCAAGCCGGATCCGACTA 61.793 63.158 35.42 0.00 42.83 2.59
513 517 1.300233 GCAAGCCGGATCCGACTAG 60.300 63.158 35.42 21.44 42.83 2.57
514 518 1.735376 GCAAGCCGGATCCGACTAGA 61.735 60.000 35.42 0.00 42.83 2.43
515 519 0.312416 CAAGCCGGATCCGACTAGAG 59.688 60.000 35.42 18.00 42.83 2.43
516 520 1.457009 AAGCCGGATCCGACTAGAGC 61.457 60.000 35.42 26.44 42.83 4.09
529 533 1.271054 ACTAGAGCAGGTGCAAGTTGG 60.271 52.381 4.75 0.00 45.16 3.77
530 534 0.036732 TAGAGCAGGTGCAAGTTGGG 59.963 55.000 4.75 0.00 45.16 4.12
536 540 2.242043 CAGGTGCAAGTTGGGATCTTT 58.758 47.619 4.75 0.00 0.00 2.52
537 541 2.229784 CAGGTGCAAGTTGGGATCTTTC 59.770 50.000 4.75 0.00 0.00 2.62
608 612 8.958060 TTAATCCACTTAGACATAGATAGGCT 57.042 34.615 0.00 0.00 0.00 4.58
624 628 9.920946 ATAGATAGGCTCTTTAAAATTTGACCA 57.079 29.630 0.00 0.00 35.28 4.02
625 629 8.056407 AGATAGGCTCTTTAAAATTTGACCAC 57.944 34.615 0.00 0.00 0.00 4.16
626 630 7.890655 AGATAGGCTCTTTAAAATTTGACCACT 59.109 33.333 0.00 0.00 0.00 4.00
627 631 9.174166 GATAGGCTCTTTAAAATTTGACCACTA 57.826 33.333 0.00 0.00 0.00 2.74
628 632 7.454260 AGGCTCTTTAAAATTTGACCACTAG 57.546 36.000 0.00 0.00 0.00 2.57
724 729 9.790389 CTTTTATGCTATATAGTACTCCCTTCG 57.210 37.037 11.38 0.00 0.00 3.79
725 730 8.874744 TTTATGCTATATAGTACTCCCTTCGT 57.125 34.615 11.38 0.00 0.00 3.85
726 731 8.874744 TTATGCTATATAGTACTCCCTTCGTT 57.125 34.615 11.38 0.00 0.00 3.85
727 732 7.778185 ATGCTATATAGTACTCCCTTCGTTT 57.222 36.000 11.38 0.00 0.00 3.60
728 733 7.211966 TGCTATATAGTACTCCCTTCGTTTC 57.788 40.000 11.38 0.00 0.00 2.78
729 734 6.208204 TGCTATATAGTACTCCCTTCGTTTCC 59.792 42.308 11.38 0.00 0.00 3.13
730 735 6.208204 GCTATATAGTACTCCCTTCGTTTCCA 59.792 42.308 11.38 0.00 0.00 3.53
731 736 7.255730 GCTATATAGTACTCCCTTCGTTTCCAA 60.256 40.741 11.38 0.00 0.00 3.53
732 737 5.750352 ATAGTACTCCCTTCGTTTCCAAA 57.250 39.130 0.00 0.00 0.00 3.28
733 738 4.635699 AGTACTCCCTTCGTTTCCAAAT 57.364 40.909 0.00 0.00 0.00 2.32
734 739 5.750352 AGTACTCCCTTCGTTTCCAAATA 57.250 39.130 0.00 0.00 0.00 1.40
735 740 6.309389 AGTACTCCCTTCGTTTCCAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
736 741 6.718294 AGTACTCCCTTCGTTTCCAAATATT 58.282 36.000 0.00 0.00 0.00 1.28
737 742 7.173032 AGTACTCCCTTCGTTTCCAAATATTT 58.827 34.615 0.00 0.00 0.00 1.40
738 743 6.267496 ACTCCCTTCGTTTCCAAATATTTG 57.733 37.500 19.40 19.40 37.90 2.32
739 744 5.773176 ACTCCCTTCGTTTCCAAATATTTGT 59.227 36.000 23.24 0.77 36.45 2.83
740 745 6.072119 ACTCCCTTCGTTTCCAAATATTTGTC 60.072 38.462 23.24 11.68 36.45 3.18
741 746 6.007703 TCCCTTCGTTTCCAAATATTTGTCT 58.992 36.000 23.24 0.00 36.45 3.41
742 747 6.492087 TCCCTTCGTTTCCAAATATTTGTCTT 59.508 34.615 23.24 0.00 36.45 3.01
743 748 7.014808 TCCCTTCGTTTCCAAATATTTGTCTTT 59.985 33.333 23.24 0.00 36.45 2.52
744 749 7.655732 CCCTTCGTTTCCAAATATTTGTCTTTT 59.344 33.333 23.24 0.00 36.45 2.27
745 750 9.040939 CCTTCGTTTCCAAATATTTGTCTTTTT 57.959 29.630 23.24 0.00 36.45 1.94
762 767 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
763 768 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
769 774 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
772 777 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
773 778 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
774 779 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
775 780 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
776 781 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
777 782 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
779 784 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
780 785 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
781 786 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
782 787 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
783 788 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
784 789 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
785 790 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
787 792 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
818 823 5.171339 AGTGTAGATCCACTCATTTTGCT 57.829 39.130 0.00 0.00 41.84 3.91
819 824 5.181748 AGTGTAGATCCACTCATTTTGCTC 58.818 41.667 0.00 0.00 41.84 4.26
820 825 5.046014 AGTGTAGATCCACTCATTTTGCTCT 60.046 40.000 0.00 0.00 41.84 4.09
821 826 5.064452 GTGTAGATCCACTCATTTTGCTCTG 59.936 44.000 0.00 0.00 32.50 3.35
822 827 3.015327 AGATCCACTCATTTTGCTCTGC 58.985 45.455 0.00 0.00 0.00 4.26
823 828 2.275134 TCCACTCATTTTGCTCTGCA 57.725 45.000 0.00 0.00 36.47 4.41
824 829 2.799017 TCCACTCATTTTGCTCTGCAT 58.201 42.857 0.00 0.00 38.76 3.96
825 830 2.490509 TCCACTCATTTTGCTCTGCATG 59.509 45.455 0.00 0.00 38.76 4.06
826 831 2.230508 CCACTCATTTTGCTCTGCATGT 59.769 45.455 0.00 0.00 38.76 3.21
827 832 3.441222 CCACTCATTTTGCTCTGCATGTA 59.559 43.478 0.00 0.00 38.76 2.29
828 833 4.438336 CCACTCATTTTGCTCTGCATGTAG 60.438 45.833 4.14 4.14 38.76 2.74
829 834 4.155462 CACTCATTTTGCTCTGCATGTAGT 59.845 41.667 10.80 0.00 38.76 2.73
830 835 4.394300 ACTCATTTTGCTCTGCATGTAGTC 59.606 41.667 10.80 5.00 38.76 2.59
831 836 4.325972 TCATTTTGCTCTGCATGTAGTCA 58.674 39.130 10.80 7.44 38.76 3.41
832 837 4.154737 TCATTTTGCTCTGCATGTAGTCAC 59.845 41.667 10.80 2.57 38.76 3.67
833 838 3.407424 TTTGCTCTGCATGTAGTCACT 57.593 42.857 10.80 0.00 38.76 3.41
834 839 3.407424 TTGCTCTGCATGTAGTCACTT 57.593 42.857 10.80 0.00 38.76 3.16
835 840 2.691927 TGCTCTGCATGTAGTCACTTG 58.308 47.619 10.80 0.00 31.71 3.16
836 841 2.037641 TGCTCTGCATGTAGTCACTTGT 59.962 45.455 10.80 0.00 31.71 3.16
837 842 3.070018 GCTCTGCATGTAGTCACTTGTT 58.930 45.455 10.80 0.00 33.46 2.83
838 843 3.120408 GCTCTGCATGTAGTCACTTGTTG 60.120 47.826 10.80 0.00 33.46 3.33
839 844 4.309933 CTCTGCATGTAGTCACTTGTTGA 58.690 43.478 10.80 0.00 33.46 3.18
840 845 4.702831 TCTGCATGTAGTCACTTGTTGAA 58.297 39.130 10.80 0.00 35.39 2.69
841 846 5.122519 TCTGCATGTAGTCACTTGTTGAAA 58.877 37.500 10.80 0.00 35.39 2.69
842 847 5.764686 TCTGCATGTAGTCACTTGTTGAAAT 59.235 36.000 10.80 0.00 35.39 2.17
843 848 6.000891 TGCATGTAGTCACTTGTTGAAATC 57.999 37.500 0.00 0.00 35.39 2.17
844 849 5.764686 TGCATGTAGTCACTTGTTGAAATCT 59.235 36.000 0.00 0.00 35.39 2.40
845 850 6.073058 TGCATGTAGTCACTTGTTGAAATCTC 60.073 38.462 0.00 0.00 35.39 2.75
846 851 6.148480 GCATGTAGTCACTTGTTGAAATCTCT 59.852 38.462 0.00 0.00 35.39 3.10
847 852 7.331934 GCATGTAGTCACTTGTTGAAATCTCTA 59.668 37.037 0.00 0.00 35.39 2.43
848 853 9.208022 CATGTAGTCACTTGTTGAAATCTCTAA 57.792 33.333 0.00 0.00 35.39 2.10
849 854 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
850 855 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
853 858 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
854 859 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
855 860 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
856 861 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
874 879 9.807921 AAAAGACAAATATTTAGGAACAGAGGA 57.192 29.630 0.00 0.00 0.00 3.71
875 880 9.807921 AAAGACAAATATTTAGGAACAGAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
876 881 9.454859 AAGACAAATATTTAGGAACAGAGGAAG 57.545 33.333 0.00 0.00 0.00 3.46
881 886 9.892130 AAATATTTAGGAACAGAGGAAGTACTG 57.108 33.333 0.00 0.00 39.65 2.74
890 895 7.504911 GGAACAGAGGAAGTACTGGTATATACA 59.495 40.741 14.70 0.76 38.30 2.29
891 896 8.834004 AACAGAGGAAGTACTGGTATATACAA 57.166 34.615 14.70 2.30 38.30 2.41
894 901 9.915629 CAGAGGAAGTACTGGTATATACAATTC 57.084 37.037 14.70 8.47 0.00 2.17
935 944 1.616374 TGATAATCCATAGTCCGCGCA 59.384 47.619 8.75 0.00 0.00 6.09
943 955 0.598680 ATAGTCCGCGCATTGCTCTC 60.599 55.000 8.75 0.00 43.27 3.20
967 979 4.827087 CAGCCACCGCTCGCTCAT 62.827 66.667 0.00 0.00 43.95 2.90
1088 1102 0.797249 CGAGTTCACCGATCGACCAC 60.797 60.000 18.66 7.59 38.72 4.16
1129 1143 0.603569 CACGCCTAGTGTCAACCTCT 59.396 55.000 0.00 0.00 45.51 3.69
1150 1173 1.725169 ATCCCTCCTCCTCCTCTCCG 61.725 65.000 0.00 0.00 0.00 4.63
1226 1249 2.358003 AGACCAGCAGTTCTGCGC 60.358 61.111 17.28 0.00 41.50 6.09
1366 1389 2.038952 CTGAACCTGGTCACCATCAAGA 59.961 50.000 0.00 0.00 30.82 3.02
1482 1505 0.319211 TCGACGACGCCAAGTTCAAT 60.319 50.000 1.48 0.00 39.58 2.57
1626 1649 4.796495 GTCATGGGGGCCGTCACC 62.796 72.222 0.00 0.00 0.00 4.02
1646 1669 4.161295 CCTCATCAAGCGGGCCGA 62.161 66.667 33.44 9.29 0.00 5.54
1830 1854 8.427902 TGGTAGCTATATGTTCATCTTGATCT 57.572 34.615 0.00 0.00 0.00 2.75
1843 1867 7.369803 TCATCTTGATCTGTGCTTCTTTTAC 57.630 36.000 0.00 0.00 0.00 2.01
1884 1908 5.632347 GCTTTGTGATCTCCTTTTGTCATTG 59.368 40.000 0.00 0.00 0.00 2.82
1891 1915 6.944290 TGATCTCCTTTTGTCATTGTTGAGAT 59.056 34.615 0.00 0.00 40.12 2.75
1907 1931 7.744087 TGTTGAGATATTGTTTAGTGCTTGT 57.256 32.000 0.00 0.00 0.00 3.16
1909 1933 6.985188 TGAGATATTGTTTAGTGCTTGTCC 57.015 37.500 0.00 0.00 0.00 4.02
1938 1962 9.953697 TTGGGATATTTTATTAACGCATACAAC 57.046 29.630 0.00 0.00 0.00 3.32
1992 2017 9.886132 ATTAGATAGAAAAAGGACGTGTTACAT 57.114 29.630 0.00 0.00 0.00 2.29
1994 2019 8.699283 AGATAGAAAAAGGACGTGTTACATAC 57.301 34.615 0.00 0.00 0.00 2.39
1995 2020 7.763071 AGATAGAAAAAGGACGTGTTACATACC 59.237 37.037 0.00 0.00 0.00 2.73
1996 2021 4.687483 AGAAAAAGGACGTGTTACATACCG 59.313 41.667 0.00 0.00 0.00 4.02
1997 2022 3.940209 AAAGGACGTGTTACATACCGA 57.060 42.857 0.00 0.00 0.00 4.69
1998 2023 3.940209 AAGGACGTGTTACATACCGAA 57.060 42.857 0.00 0.00 0.00 4.30
1999 2024 3.221964 AGGACGTGTTACATACCGAAC 57.778 47.619 0.00 0.00 0.00 3.95
2000 2025 1.913403 GGACGTGTTACATACCGAACG 59.087 52.381 0.00 0.00 37.09 3.95
2001 2026 2.584791 GACGTGTTACATACCGAACGT 58.415 47.619 0.00 0.00 45.91 3.99
2002 2027 2.318578 ACGTGTTACATACCGAACGTG 58.681 47.619 1.03 0.00 42.13 4.49
2003 2028 2.287547 ACGTGTTACATACCGAACGTGT 60.288 45.455 1.03 0.00 42.13 4.49
2004 2029 2.725723 CGTGTTACATACCGAACGTGTT 59.274 45.455 0.00 0.00 0.00 3.32
2005 2030 3.182173 CGTGTTACATACCGAACGTGTTT 59.818 43.478 0.00 0.00 0.00 2.83
2006 2031 4.448005 GTGTTACATACCGAACGTGTTTG 58.552 43.478 0.00 0.00 0.00 2.93
2007 2032 4.025813 GTGTTACATACCGAACGTGTTTGT 60.026 41.667 0.00 0.00 33.45 2.83
2008 2033 4.025896 TGTTACATACCGAACGTGTTTGTG 60.026 41.667 9.73 0.00 31.71 3.33
2009 2034 1.868498 ACATACCGAACGTGTTTGTGG 59.132 47.619 0.00 0.00 0.00 4.17
2010 2035 1.868498 CATACCGAACGTGTTTGTGGT 59.132 47.619 0.00 9.28 0.00 4.16
2011 2036 2.879002 TACCGAACGTGTTTGTGGTA 57.121 45.000 0.00 7.81 0.00 3.25
2012 2037 1.574134 ACCGAACGTGTTTGTGGTAG 58.426 50.000 0.00 0.00 0.00 3.18
2013 2038 1.136695 ACCGAACGTGTTTGTGGTAGA 59.863 47.619 0.00 0.00 0.00 2.59
2014 2039 2.203401 CCGAACGTGTTTGTGGTAGAA 58.797 47.619 0.00 0.00 0.00 2.10
2015 2040 2.803956 CCGAACGTGTTTGTGGTAGAAT 59.196 45.455 0.00 0.00 0.00 2.40
2016 2041 3.249080 CCGAACGTGTTTGTGGTAGAATT 59.751 43.478 0.00 0.00 0.00 2.17
2017 2042 4.260866 CCGAACGTGTTTGTGGTAGAATTT 60.261 41.667 0.00 0.00 0.00 1.82
2018 2043 5.267776 CGAACGTGTTTGTGGTAGAATTTT 58.732 37.500 0.00 0.00 0.00 1.82
2019 2044 5.394322 CGAACGTGTTTGTGGTAGAATTTTC 59.606 40.000 0.00 0.00 0.00 2.29
2020 2045 4.839796 ACGTGTTTGTGGTAGAATTTTCG 58.160 39.130 0.00 0.00 0.00 3.46
2021 2046 4.215965 CGTGTTTGTGGTAGAATTTTCGG 58.784 43.478 0.00 0.00 0.00 4.30
2022 2047 3.978855 GTGTTTGTGGTAGAATTTTCGGC 59.021 43.478 0.00 0.00 0.00 5.54
2023 2048 3.632604 TGTTTGTGGTAGAATTTTCGGCA 59.367 39.130 0.00 0.00 0.00 5.69
2024 2049 4.098044 TGTTTGTGGTAGAATTTTCGGCAA 59.902 37.500 0.00 0.00 0.00 4.52
2025 2050 4.497473 TTGTGGTAGAATTTTCGGCAAG 57.503 40.909 0.00 0.00 0.00 4.01
2026 2051 2.817258 TGTGGTAGAATTTTCGGCAAGG 59.183 45.455 0.00 0.00 0.00 3.61
2027 2052 3.078837 GTGGTAGAATTTTCGGCAAGGA 58.921 45.455 0.00 0.00 0.00 3.36
2028 2053 3.127030 GTGGTAGAATTTTCGGCAAGGAG 59.873 47.826 0.00 0.00 0.00 3.69
2029 2054 2.097629 GGTAGAATTTTCGGCAAGGAGC 59.902 50.000 0.00 0.00 44.65 4.70
2038 2063 4.785453 GCAAGGAGCCCCCAGTCG 62.785 72.222 0.00 0.00 37.41 4.18
2039 2064 3.322466 CAAGGAGCCCCCAGTCGT 61.322 66.667 0.00 0.00 37.41 4.34
2040 2065 3.003763 AAGGAGCCCCCAGTCGTC 61.004 66.667 0.00 0.00 37.41 4.20
2041 2066 3.547787 AAGGAGCCCCCAGTCGTCT 62.548 63.158 0.00 0.00 37.41 4.18
2042 2067 2.043248 GGAGCCCCCAGTCGTCTA 60.043 66.667 0.00 0.00 34.14 2.59
2043 2068 2.424733 GGAGCCCCCAGTCGTCTAC 61.425 68.421 0.00 0.00 34.14 2.59
2044 2069 1.681327 GAGCCCCCAGTCGTCTACA 60.681 63.158 0.00 0.00 0.00 2.74
2045 2070 1.229082 AGCCCCCAGTCGTCTACAA 60.229 57.895 0.00 0.00 0.00 2.41
2046 2071 1.218316 GCCCCCAGTCGTCTACAAG 59.782 63.158 0.00 0.00 0.00 3.16
2047 2072 1.218316 CCCCCAGTCGTCTACAAGC 59.782 63.158 0.00 0.00 0.00 4.01
2048 2073 1.218316 CCCCAGTCGTCTACAAGCC 59.782 63.158 0.00 0.00 0.00 4.35
2049 2074 1.153823 CCCAGTCGTCTACAAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
2050 2075 1.153823 CCAGTCGTCTACAAGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
2051 2076 1.585006 CAGTCGTCTACAAGCCGGT 59.415 57.895 1.90 0.00 0.00 5.28
2052 2077 0.038526 CAGTCGTCTACAAGCCGGTT 60.039 55.000 1.90 0.00 0.00 4.44
2053 2078 0.243095 AGTCGTCTACAAGCCGGTTC 59.757 55.000 1.90 0.00 0.00 3.62
2054 2079 0.243095 GTCGTCTACAAGCCGGTTCT 59.757 55.000 1.90 0.00 0.00 3.01
2055 2080 0.524862 TCGTCTACAAGCCGGTTCTC 59.475 55.000 1.90 0.00 0.00 2.87
2056 2081 0.242825 CGTCTACAAGCCGGTTCTCA 59.757 55.000 1.90 0.00 0.00 3.27
2057 2082 1.336517 CGTCTACAAGCCGGTTCTCAA 60.337 52.381 1.90 0.00 0.00 3.02
2058 2083 2.762745 GTCTACAAGCCGGTTCTCAAA 58.237 47.619 1.90 0.00 0.00 2.69
2059 2084 3.135994 GTCTACAAGCCGGTTCTCAAAA 58.864 45.455 1.90 0.00 0.00 2.44
2060 2085 3.751698 GTCTACAAGCCGGTTCTCAAAAT 59.248 43.478 1.90 0.00 0.00 1.82
2061 2086 3.751175 TCTACAAGCCGGTTCTCAAAATG 59.249 43.478 1.90 0.00 0.00 2.32
2062 2087 2.582052 ACAAGCCGGTTCTCAAAATGA 58.418 42.857 1.90 0.00 0.00 2.57
2063 2088 2.955660 ACAAGCCGGTTCTCAAAATGAA 59.044 40.909 1.90 0.00 0.00 2.57
2064 2089 3.573967 ACAAGCCGGTTCTCAAAATGAAT 59.426 39.130 1.90 0.00 0.00 2.57
2065 2090 4.764823 ACAAGCCGGTTCTCAAAATGAATA 59.235 37.500 1.90 0.00 0.00 1.75
2066 2091 5.418840 ACAAGCCGGTTCTCAAAATGAATAT 59.581 36.000 1.90 0.00 0.00 1.28
2067 2092 6.071391 ACAAGCCGGTTCTCAAAATGAATATT 60.071 34.615 1.90 0.00 0.00 1.28
2068 2093 6.530019 AGCCGGTTCTCAAAATGAATATTT 57.470 33.333 1.90 0.00 38.11 1.40
2069 2094 6.935167 AGCCGGTTCTCAAAATGAATATTTT 58.065 32.000 1.90 0.00 45.01 1.82
2070 2095 8.062065 AGCCGGTTCTCAAAATGAATATTTTA 57.938 30.769 1.90 0.00 42.92 1.52
2071 2096 8.527810 AGCCGGTTCTCAAAATGAATATTTTAA 58.472 29.630 1.90 0.00 42.92 1.52
2072 2097 9.313118 GCCGGTTCTCAAAATGAATATTTTAAT 57.687 29.630 1.90 0.00 42.92 1.40
2085 2110 9.950680 ATGAATATTTTAATTGGCTTACACGAG 57.049 29.630 0.00 0.00 0.00 4.18
2086 2111 8.952278 TGAATATTTTAATTGGCTTACACGAGT 58.048 29.630 0.00 0.00 0.00 4.18
2093 2118 8.774890 TTAATTGGCTTACACGAGTATTTACA 57.225 30.769 0.00 0.00 0.00 2.41
2094 2119 7.859325 AATTGGCTTACACGAGTATTTACAT 57.141 32.000 0.00 0.00 0.00 2.29
2095 2120 8.951787 AATTGGCTTACACGAGTATTTACATA 57.048 30.769 0.00 0.00 0.00 2.29
2096 2121 9.555727 AATTGGCTTACACGAGTATTTACATAT 57.444 29.630 0.00 0.00 0.00 1.78
2097 2122 8.951787 TTGGCTTACACGAGTATTTACATATT 57.048 30.769 0.00 0.00 0.00 1.28
2098 2123 8.951787 TGGCTTACACGAGTATTTACATATTT 57.048 30.769 0.00 0.00 0.00 1.40
2099 2124 9.037737 TGGCTTACACGAGTATTTACATATTTC 57.962 33.333 0.00 0.00 0.00 2.17
2100 2125 9.037737 GGCTTACACGAGTATTTACATATTTCA 57.962 33.333 0.00 0.00 0.00 2.69
2193 2218 7.406620 AATATAAGAATGGATCAAGACCCCA 57.593 36.000 0.00 0.00 0.00 4.96
2240 2265 2.639065 TGGCACCCTTTAATTAGAGCG 58.361 47.619 0.00 0.00 0.00 5.03
2290 2315 3.305110 CGTGCCCATAAGTTGTTTCAAC 58.695 45.455 4.69 4.69 0.00 3.18
2298 2323 9.301153 GCCCATAAGTTGTTTCAACTATAATTG 57.699 33.333 14.16 8.50 0.00 2.32
2354 2379 9.109393 GAAGCTACCACTGTCAATAATTTATGA 57.891 33.333 0.00 0.00 0.00 2.15
2384 2410 6.817140 CCTTATTCTAAACAAGCCGACTTAGT 59.183 38.462 0.00 0.00 33.74 2.24
2460 2486 1.535462 CAAAGACCCGACCACATGTTC 59.465 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.133809 TGCTCATATGGGTAGGGGGC 61.134 60.000 4.11 0.00 0.00 5.80
13 14 2.166050 CTCTCGGAGATGCTCATATGGG 59.834 54.545 8.39 0.00 33.89 4.00
16 17 1.824230 GCCTCTCGGAGATGCTCATAT 59.176 52.381 22.88 0.00 33.80 1.78
25 26 1.450491 CGACTCAGCCTCTCGGAGA 60.450 63.158 7.60 7.60 39.01 3.71
35 36 3.433274 TCAAAATGATGTGTCGACTCAGC 59.567 43.478 24.55 24.55 0.00 4.26
41 42 5.163963 CGTCAATCTCAAAATGATGTGTCGA 60.164 40.000 0.00 0.00 0.00 4.20
97 98 0.112606 TTCAGTGGGAGGAGACGTCT 59.887 55.000 20.18 20.18 0.00 4.18
98 99 0.244178 GTTCAGTGGGAGGAGACGTC 59.756 60.000 7.70 7.70 0.00 4.34
149 150 1.726248 GCATTGGTGGTCGCATTTTTC 59.274 47.619 0.00 0.00 0.00 2.29
187 188 2.151369 GTGGAACCAACCCTCAGGA 58.849 57.895 0.00 0.00 36.73 3.86
233 234 8.758715 CCAAATTTGAATGAGACTTGAGAAAAC 58.241 33.333 19.86 0.00 0.00 2.43
297 301 1.004440 AAGCAGGCAAGTCTCGTCC 60.004 57.895 0.00 0.00 0.00 4.79
298 302 1.016653 GGAAGCAGGCAAGTCTCGTC 61.017 60.000 0.00 0.00 0.00 4.20
299 303 1.004440 GGAAGCAGGCAAGTCTCGT 60.004 57.895 0.00 0.00 0.00 4.18
300 304 1.743252 GGGAAGCAGGCAAGTCTCG 60.743 63.158 0.00 0.00 0.00 4.04
301 305 0.392327 GAGGGAAGCAGGCAAGTCTC 60.392 60.000 0.00 0.00 0.00 3.36
302 306 1.682257 GAGGGAAGCAGGCAAGTCT 59.318 57.895 0.00 0.00 0.00 3.24
303 307 1.743252 CGAGGGAAGCAGGCAAGTC 60.743 63.158 0.00 0.00 0.00 3.01
304 308 2.348998 CGAGGGAAGCAGGCAAGT 59.651 61.111 0.00 0.00 0.00 3.16
305 309 2.037136 CACGAGGGAAGCAGGCAAG 61.037 63.158 0.00 0.00 0.00 4.01
306 310 2.032528 CACGAGGGAAGCAGGCAA 59.967 61.111 0.00 0.00 0.00 4.52
307 311 3.241530 ACACGAGGGAAGCAGGCA 61.242 61.111 0.00 0.00 0.00 4.75
308 312 2.743928 CACACGAGGGAAGCAGGC 60.744 66.667 0.00 0.00 0.00 4.85
309 313 0.951040 GAACACACGAGGGAAGCAGG 60.951 60.000 0.00 0.00 0.00 4.85
310 314 0.951040 GGAACACACGAGGGAAGCAG 60.951 60.000 0.00 0.00 0.00 4.24
311 315 1.070786 GGAACACACGAGGGAAGCA 59.929 57.895 0.00 0.00 0.00 3.91
312 316 1.671379 GGGAACACACGAGGGAAGC 60.671 63.158 0.00 0.00 0.00 3.86
313 317 1.752198 TGGGAACACACGAGGGAAG 59.248 57.895 0.00 0.00 33.40 3.46
314 318 3.973458 TGGGAACACACGAGGGAA 58.027 55.556 0.00 0.00 33.40 3.97
325 329 2.124695 GGGAGCACGGATGGGAAC 60.125 66.667 0.00 0.00 0.00 3.62
326 330 3.781307 CGGGAGCACGGATGGGAA 61.781 66.667 0.00 0.00 0.00 3.97
338 342 0.179048 TCAAGCCATGTATGCGGGAG 60.179 55.000 0.00 0.00 0.00 4.30
339 343 0.473755 ATCAAGCCATGTATGCGGGA 59.526 50.000 0.00 0.00 0.00 5.14
340 344 1.321474 AATCAAGCCATGTATGCGGG 58.679 50.000 0.00 0.00 0.00 6.13
341 345 2.358582 TCAAATCAAGCCATGTATGCGG 59.641 45.455 0.00 0.00 0.00 5.69
342 346 3.696281 TCAAATCAAGCCATGTATGCG 57.304 42.857 0.00 0.00 0.00 4.73
343 347 4.748102 CCAATCAAATCAAGCCATGTATGC 59.252 41.667 0.00 0.00 0.00 3.14
344 348 6.151663 TCCAATCAAATCAAGCCATGTATG 57.848 37.500 0.00 0.00 0.00 2.39
345 349 6.154877 TGTTCCAATCAAATCAAGCCATGTAT 59.845 34.615 0.00 0.00 0.00 2.29
346 350 5.479724 TGTTCCAATCAAATCAAGCCATGTA 59.520 36.000 0.00 0.00 0.00 2.29
347 351 4.283978 TGTTCCAATCAAATCAAGCCATGT 59.716 37.500 0.00 0.00 0.00 3.21
348 352 4.823157 TGTTCCAATCAAATCAAGCCATG 58.177 39.130 0.00 0.00 0.00 3.66
349 353 5.486735 TTGTTCCAATCAAATCAAGCCAT 57.513 34.783 0.00 0.00 0.00 4.40
350 354 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
351 355 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
352 356 9.206870 TCTTATTTTGTTCCAATCAAATCAAGC 57.793 29.630 0.00 0.00 35.25 4.01
354 358 9.190858 CGTCTTATTTTGTTCCAATCAAATCAA 57.809 29.630 0.00 0.00 35.25 2.57
355 359 7.328249 GCGTCTTATTTTGTTCCAATCAAATCA 59.672 33.333 0.00 0.00 35.25 2.57
356 360 7.461416 CGCGTCTTATTTTGTTCCAATCAAATC 60.461 37.037 0.00 0.00 35.25 2.17
357 361 6.307800 CGCGTCTTATTTTGTTCCAATCAAAT 59.692 34.615 0.00 0.00 35.25 2.32
358 362 5.627367 CGCGTCTTATTTTGTTCCAATCAAA 59.373 36.000 0.00 0.00 33.76 2.69
359 363 5.150683 CGCGTCTTATTTTGTTCCAATCAA 58.849 37.500 0.00 0.00 0.00 2.57
360 364 4.378978 CCGCGTCTTATTTTGTTCCAATCA 60.379 41.667 4.92 0.00 0.00 2.57
361 365 4.095610 CCGCGTCTTATTTTGTTCCAATC 58.904 43.478 4.92 0.00 0.00 2.67
362 366 3.672241 GCCGCGTCTTATTTTGTTCCAAT 60.672 43.478 4.92 0.00 0.00 3.16
363 367 2.350964 GCCGCGTCTTATTTTGTTCCAA 60.351 45.455 4.92 0.00 0.00 3.53
364 368 1.198178 GCCGCGTCTTATTTTGTTCCA 59.802 47.619 4.92 0.00 0.00 3.53
365 369 1.466866 GGCCGCGTCTTATTTTGTTCC 60.467 52.381 4.92 0.00 0.00 3.62
366 370 1.466866 GGGCCGCGTCTTATTTTGTTC 60.467 52.381 4.92 0.00 0.00 3.18
367 371 0.524414 GGGCCGCGTCTTATTTTGTT 59.476 50.000 4.92 0.00 0.00 2.83
368 372 1.310216 GGGGCCGCGTCTTATTTTGT 61.310 55.000 3.09 0.00 0.00 2.83
369 373 1.309499 TGGGGCCGCGTCTTATTTTG 61.309 55.000 15.95 0.00 0.00 2.44
370 374 1.001887 TGGGGCCGCGTCTTATTTT 60.002 52.632 15.95 0.00 0.00 1.82
371 375 1.747745 GTGGGGCCGCGTCTTATTT 60.748 57.895 15.95 0.00 0.00 1.40
372 376 2.124860 GTGGGGCCGCGTCTTATT 60.125 61.111 15.95 0.00 0.00 1.40
373 377 4.171103 GGTGGGGCCGCGTCTTAT 62.171 66.667 15.95 0.00 0.00 1.73
381 385 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
382 386 0.689745 GATTTTAAGGGGGTGGGGCC 60.690 60.000 0.00 0.00 0.00 5.80
383 387 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
384 388 1.342975 CCTGATTTTAAGGGGGTGGGG 60.343 57.143 0.00 0.00 0.00 4.96
385 389 2.159179 CCTGATTTTAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
404 408 7.016661 TGTCTTTCTAATCTAATCATCTCCCCC 59.983 40.741 0.00 0.00 0.00 5.40
405 409 7.967908 TGTCTTTCTAATCTAATCATCTCCCC 58.032 38.462 0.00 0.00 0.00 4.81
406 410 9.838339 TTTGTCTTTCTAATCTAATCATCTCCC 57.162 33.333 0.00 0.00 0.00 4.30
438 442 3.644966 TCATCCTATGGCGGTCTTTTT 57.355 42.857 0.00 0.00 0.00 1.94
439 443 3.054361 ACTTCATCCTATGGCGGTCTTTT 60.054 43.478 0.00 0.00 0.00 2.27
440 444 2.505819 ACTTCATCCTATGGCGGTCTTT 59.494 45.455 0.00 0.00 0.00 2.52
441 445 2.119495 ACTTCATCCTATGGCGGTCTT 58.881 47.619 0.00 0.00 0.00 3.01
442 446 1.414181 CACTTCATCCTATGGCGGTCT 59.586 52.381 0.00 0.00 0.00 3.85
443 447 1.541233 CCACTTCATCCTATGGCGGTC 60.541 57.143 0.00 0.00 0.00 4.79
444 448 0.469917 CCACTTCATCCTATGGCGGT 59.530 55.000 0.00 0.00 0.00 5.68
445 449 0.250467 CCCACTTCATCCTATGGCGG 60.250 60.000 0.00 0.00 0.00 6.13
446 450 0.758734 TCCCACTTCATCCTATGGCG 59.241 55.000 0.00 0.00 0.00 5.69
447 451 2.373169 TGATCCCACTTCATCCTATGGC 59.627 50.000 0.00 0.00 0.00 4.40
448 452 3.555795 CGTGATCCCACTTCATCCTATGG 60.556 52.174 0.00 0.00 41.06 2.74
449 453 3.555795 CCGTGATCCCACTTCATCCTATG 60.556 52.174 0.00 0.00 41.06 2.23
450 454 2.634940 CCGTGATCCCACTTCATCCTAT 59.365 50.000 0.00 0.00 41.06 2.57
451 455 2.039418 CCGTGATCCCACTTCATCCTA 58.961 52.381 0.00 0.00 41.06 2.94
452 456 0.833287 CCGTGATCCCACTTCATCCT 59.167 55.000 0.00 0.00 41.06 3.24
453 457 0.830648 TCCGTGATCCCACTTCATCC 59.169 55.000 0.00 0.00 41.06 3.51
454 458 2.487934 CATCCGTGATCCCACTTCATC 58.512 52.381 0.00 0.00 41.06 2.92
455 459 1.141657 CCATCCGTGATCCCACTTCAT 59.858 52.381 0.00 0.00 41.06 2.57
456 460 0.541392 CCATCCGTGATCCCACTTCA 59.459 55.000 0.00 0.00 41.06 3.02
457 461 0.179045 CCCATCCGTGATCCCACTTC 60.179 60.000 0.00 0.00 41.06 3.01
458 462 0.620410 TCCCATCCGTGATCCCACTT 60.620 55.000 0.00 0.00 41.06 3.16
459 463 1.002921 TCCCATCCGTGATCCCACT 59.997 57.895 0.00 0.00 41.06 4.00
460 464 1.447643 CTCCCATCCGTGATCCCAC 59.552 63.158 0.00 0.00 39.86 4.61
461 465 2.443394 GCTCCCATCCGTGATCCCA 61.443 63.158 0.00 0.00 0.00 4.37
462 466 1.772819 ATGCTCCCATCCGTGATCCC 61.773 60.000 0.00 0.00 0.00 3.85
463 467 0.604780 CATGCTCCCATCCGTGATCC 60.605 60.000 0.00 0.00 0.00 3.36
464 468 0.604780 CCATGCTCCCATCCGTGATC 60.605 60.000 0.00 0.00 0.00 2.92
465 469 1.056125 TCCATGCTCCCATCCGTGAT 61.056 55.000 0.00 0.00 0.00 3.06
466 470 1.688884 TCCATGCTCCCATCCGTGA 60.689 57.895 0.00 0.00 0.00 4.35
467 471 1.227764 CTCCATGCTCCCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
468 472 1.383109 TCTCCATGCTCCCATCCGT 60.383 57.895 0.00 0.00 0.00 4.69
469 473 1.370437 CTCTCCATGCTCCCATCCG 59.630 63.158 0.00 0.00 0.00 4.18
470 474 1.759881 CCTCTCCATGCTCCCATCC 59.240 63.158 0.00 0.00 0.00 3.51
471 475 0.765903 TCCCTCTCCATGCTCCCATC 60.766 60.000 0.00 0.00 0.00 3.51
472 476 0.767446 CTCCCTCTCCATGCTCCCAT 60.767 60.000 0.00 0.00 0.00 4.00
473 477 1.383664 CTCCCTCTCCATGCTCCCA 60.384 63.158 0.00 0.00 0.00 4.37
474 478 2.817056 GCTCCCTCTCCATGCTCCC 61.817 68.421 0.00 0.00 0.00 4.30
475 479 2.042404 CTGCTCCCTCTCCATGCTCC 62.042 65.000 0.00 0.00 0.00 4.70
476 480 1.446791 CTGCTCCCTCTCCATGCTC 59.553 63.158 0.00 0.00 0.00 4.26
477 481 2.071262 CCTGCTCCCTCTCCATGCT 61.071 63.158 0.00 0.00 0.00 3.79
478 482 2.509916 CCTGCTCCCTCTCCATGC 59.490 66.667 0.00 0.00 0.00 4.06
479 483 1.918467 TTGCCTGCTCCCTCTCCATG 61.918 60.000 0.00 0.00 0.00 3.66
480 484 1.617536 TTGCCTGCTCCCTCTCCAT 60.618 57.895 0.00 0.00 0.00 3.41
481 485 2.203983 TTGCCTGCTCCCTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
482 486 2.588989 CTTGCCTGCTCCCTCTCC 59.411 66.667 0.00 0.00 0.00 3.71
483 487 2.124778 GCTTGCCTGCTCCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
484 488 3.726144 GGCTTGCCTGCTCCCTCT 61.726 66.667 4.11 0.00 0.00 3.69
488 492 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
489 493 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
490 494 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
492 496 4.161295 TCGGATCCGGCTTGCCTG 62.161 66.667 32.79 2.53 40.25 4.85
493 497 4.162690 GTCGGATCCGGCTTGCCT 62.163 66.667 31.02 0.00 41.28 4.75
499 503 2.136196 CTGCTCTAGTCGGATCCGGC 62.136 65.000 31.20 31.20 45.28 6.13
500 504 1.519751 CCTGCTCTAGTCGGATCCGG 61.520 65.000 32.79 17.43 40.25 5.14
501 505 0.820074 ACCTGCTCTAGTCGGATCCG 60.820 60.000 28.62 28.62 41.35 4.18
502 506 0.671251 CACCTGCTCTAGTCGGATCC 59.329 60.000 0.00 0.00 0.00 3.36
503 507 0.031449 GCACCTGCTCTAGTCGGATC 59.969 60.000 0.00 0.00 38.21 3.36
504 508 0.684479 TGCACCTGCTCTAGTCGGAT 60.684 55.000 0.00 0.00 42.66 4.18
505 509 0.898326 TTGCACCTGCTCTAGTCGGA 60.898 55.000 0.00 0.00 42.66 4.55
506 510 0.459237 CTTGCACCTGCTCTAGTCGG 60.459 60.000 0.00 0.00 42.66 4.79
507 511 0.244994 ACTTGCACCTGCTCTAGTCG 59.755 55.000 0.00 0.00 42.66 4.18
508 512 2.072298 CAACTTGCACCTGCTCTAGTC 58.928 52.381 0.00 0.00 42.66 2.59
509 513 1.271054 CCAACTTGCACCTGCTCTAGT 60.271 52.381 0.00 0.00 42.66 2.57
510 514 1.446907 CCAACTTGCACCTGCTCTAG 58.553 55.000 0.00 0.00 42.66 2.43
511 515 0.036732 CCCAACTTGCACCTGCTCTA 59.963 55.000 0.00 0.00 42.66 2.43
512 516 1.228367 CCCAACTTGCACCTGCTCT 60.228 57.895 0.00 0.00 42.66 4.09
513 517 0.610232 ATCCCAACTTGCACCTGCTC 60.610 55.000 0.00 0.00 42.66 4.26
514 518 0.610232 GATCCCAACTTGCACCTGCT 60.610 55.000 0.00 0.00 42.66 4.24
515 519 0.610232 AGATCCCAACTTGCACCTGC 60.610 55.000 0.00 0.00 42.50 4.85
516 520 1.915141 AAGATCCCAACTTGCACCTG 58.085 50.000 0.00 0.00 0.00 4.00
529 533 6.484977 CCATAGCTTCAGTTTAGGAAAGATCC 59.515 42.308 0.00 0.00 46.98 3.36
530 534 7.051000 ACCATAGCTTCAGTTTAGGAAAGATC 58.949 38.462 0.00 0.00 0.00 2.75
536 540 6.779860 AGAAAACCATAGCTTCAGTTTAGGA 58.220 36.000 0.00 0.00 32.38 2.94
537 541 8.561738 TTAGAAAACCATAGCTTCAGTTTAGG 57.438 34.615 0.00 0.00 32.38 2.69
656 660 8.912658 GCAATCATATTATTTCTGCATGTTCAG 58.087 33.333 0.00 0.00 35.46 3.02
711 716 5.750352 ATTTGGAAACGAAGGGAGTACTA 57.250 39.130 0.00 0.00 37.08 1.82
713 718 6.997239 AATATTTGGAAACGAAGGGAGTAC 57.003 37.500 0.00 0.00 37.08 2.73
718 723 6.267496 AGACAAATATTTGGAAACGAAGGG 57.733 37.500 27.43 3.22 42.34 3.95
719 724 8.587952 AAAAGACAAATATTTGGAAACGAAGG 57.412 30.769 27.43 3.68 42.34 3.46
736 741 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
737 742 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
743 748 9.958180 TGTGATAGTCCATTTGAAATCTCTAAA 57.042 29.630 0.00 0.00 0.00 1.85
746 751 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
747 752 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
748 753 7.442364 CCGTATGTGATAGTCCATTTGAAATCT 59.558 37.037 0.00 0.00 0.00 2.40
749 754 7.441157 TCCGTATGTGATAGTCCATTTGAAATC 59.559 37.037 0.00 0.00 0.00 2.17
750 755 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
751 756 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
752 757 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
753 758 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
754 759 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
755 760 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
756 761 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
757 762 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
758 763 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
759 764 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
761 766 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
797 802 5.064452 CAGAGCAAAATGAGTGGATCTACAC 59.936 44.000 12.16 5.82 41.63 2.90
798 803 5.181009 CAGAGCAAAATGAGTGGATCTACA 58.819 41.667 12.16 0.00 0.00 2.74
799 804 4.034975 GCAGAGCAAAATGAGTGGATCTAC 59.965 45.833 0.00 0.00 0.00 2.59
800 805 4.194640 GCAGAGCAAAATGAGTGGATCTA 58.805 43.478 0.00 0.00 0.00 1.98
801 806 3.015327 GCAGAGCAAAATGAGTGGATCT 58.985 45.455 0.00 0.00 0.00 2.75
802 807 2.751259 TGCAGAGCAAAATGAGTGGATC 59.249 45.455 0.00 0.00 34.76 3.36
803 808 2.799017 TGCAGAGCAAAATGAGTGGAT 58.201 42.857 0.00 0.00 34.76 3.41
804 809 2.275134 TGCAGAGCAAAATGAGTGGA 57.725 45.000 0.00 0.00 34.76 4.02
805 810 2.230508 ACATGCAGAGCAAAATGAGTGG 59.769 45.455 0.00 0.00 43.62 4.00
806 811 3.570926 ACATGCAGAGCAAAATGAGTG 57.429 42.857 0.00 0.00 43.62 3.51
807 812 4.330250 ACTACATGCAGAGCAAAATGAGT 58.670 39.130 0.00 0.00 43.62 3.41
808 813 4.393990 TGACTACATGCAGAGCAAAATGAG 59.606 41.667 0.00 0.00 43.62 2.90
809 814 4.154737 GTGACTACATGCAGAGCAAAATGA 59.845 41.667 0.00 0.00 43.62 2.57
810 815 4.155462 AGTGACTACATGCAGAGCAAAATG 59.845 41.667 0.00 0.00 43.62 2.32
811 816 4.330250 AGTGACTACATGCAGAGCAAAAT 58.670 39.130 0.00 0.00 43.62 1.82
812 817 3.743521 AGTGACTACATGCAGAGCAAAA 58.256 40.909 0.00 0.00 43.62 2.44
813 818 3.407424 AGTGACTACATGCAGAGCAAA 57.593 42.857 0.00 0.00 43.62 3.68
814 819 3.069289 CAAGTGACTACATGCAGAGCAA 58.931 45.455 0.00 0.00 43.62 3.91
815 820 2.037641 ACAAGTGACTACATGCAGAGCA 59.962 45.455 0.00 0.00 44.86 4.26
816 821 2.693069 ACAAGTGACTACATGCAGAGC 58.307 47.619 0.00 0.00 0.00 4.09
817 822 4.309933 TCAACAAGTGACTACATGCAGAG 58.690 43.478 0.00 0.00 0.00 3.35
818 823 4.335400 TCAACAAGTGACTACATGCAGA 57.665 40.909 0.00 0.00 0.00 4.26
819 824 5.422666 TTTCAACAAGTGACTACATGCAG 57.577 39.130 0.00 0.00 35.39 4.41
820 825 5.764686 AGATTTCAACAAGTGACTACATGCA 59.235 36.000 0.00 0.00 35.39 3.96
821 826 6.148480 AGAGATTTCAACAAGTGACTACATGC 59.852 38.462 0.00 0.00 35.39 4.06
822 827 7.664082 AGAGATTTCAACAAGTGACTACATG 57.336 36.000 0.00 0.00 35.39 3.21
823 828 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
824 829 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
827 832 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
828 833 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
829 834 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
830 835 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
848 853 9.807921 TCCTCTGTTCCTAAATATTTGTCTTTT 57.192 29.630 11.05 0.00 0.00 2.27
849 854 9.807921 TTCCTCTGTTCCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
850 855 9.454859 CTTCCTCTGTTCCTAAATATTTGTCTT 57.545 33.333 11.05 0.00 0.00 3.01
851 856 8.606830 ACTTCCTCTGTTCCTAAATATTTGTCT 58.393 33.333 11.05 0.00 0.00 3.41
852 857 8.794335 ACTTCCTCTGTTCCTAAATATTTGTC 57.206 34.615 11.05 0.00 0.00 3.18
853 858 9.668497 GTACTTCCTCTGTTCCTAAATATTTGT 57.332 33.333 11.05 0.00 0.00 2.83
854 859 9.892130 AGTACTTCCTCTGTTCCTAAATATTTG 57.108 33.333 11.05 1.40 0.00 2.32
855 860 9.892130 CAGTACTTCCTCTGTTCCTAAATATTT 57.108 33.333 5.89 5.89 0.00 1.40
856 861 8.487028 CCAGTACTTCCTCTGTTCCTAAATATT 58.513 37.037 0.00 0.00 0.00 1.28
857 862 7.624077 ACCAGTACTTCCTCTGTTCCTAAATAT 59.376 37.037 0.00 0.00 0.00 1.28
858 863 6.958192 ACCAGTACTTCCTCTGTTCCTAAATA 59.042 38.462 0.00 0.00 0.00 1.40
859 864 5.785940 ACCAGTACTTCCTCTGTTCCTAAAT 59.214 40.000 0.00 0.00 0.00 1.40
860 865 5.152934 ACCAGTACTTCCTCTGTTCCTAAA 58.847 41.667 0.00 0.00 0.00 1.85
861 866 4.748701 ACCAGTACTTCCTCTGTTCCTAA 58.251 43.478 0.00 0.00 0.00 2.69
862 867 4.399483 ACCAGTACTTCCTCTGTTCCTA 57.601 45.455 0.00 0.00 0.00 2.94
863 868 3.261818 ACCAGTACTTCCTCTGTTCCT 57.738 47.619 0.00 0.00 0.00 3.36
864 869 6.980416 ATATACCAGTACTTCCTCTGTTCC 57.020 41.667 0.00 0.00 0.00 3.62
865 870 8.461249 TGTATATACCAGTACTTCCTCTGTTC 57.539 38.462 10.38 0.00 0.00 3.18
866 871 8.834004 TTGTATATACCAGTACTTCCTCTGTT 57.166 34.615 10.38 0.00 0.00 3.16
867 872 9.435570 AATTGTATATACCAGTACTTCCTCTGT 57.564 33.333 10.38 0.00 0.00 3.41
868 873 9.915629 GAATTGTATATACCAGTACTTCCTCTG 57.084 37.037 10.38 0.00 0.00 3.35
869 874 9.884814 AGAATTGTATATACCAGTACTTCCTCT 57.115 33.333 10.38 0.00 0.00 3.69
917 926 3.002791 CAATGCGCGGACTATGGATTAT 58.997 45.455 8.83 0.00 0.00 1.28
935 944 2.555757 GTGGCTGAGTTTTGAGAGCAAT 59.444 45.455 0.00 0.00 33.25 3.56
967 979 1.870580 CGCGTGGTCAGGAGTGTTTTA 60.871 52.381 0.00 0.00 0.00 1.52
1129 1143 1.790157 GGAGAGGAGGAGGAGGGATAA 59.210 57.143 0.00 0.00 0.00 1.75
1744 1767 2.124011 ACGTTACTCTGCGTCGAAAA 57.876 45.000 0.00 0.00 36.54 2.29
1752 1776 5.162075 ACATCAAGAAGTACGTTACTCTGC 58.838 41.667 0.00 0.00 38.26 4.26
1794 1818 9.495572 GAACATATAGCTACCATAGAAAAGCTT 57.504 33.333 0.00 0.00 42.52 3.74
1884 1908 7.094805 TGGACAAGCACTAAACAATATCTCAAC 60.095 37.037 0.00 0.00 0.00 3.18
1891 1915 6.295011 CCCAAATGGACAAGCACTAAACAATA 60.295 38.462 0.00 0.00 37.39 1.90
1929 1953 4.347813 CCGGGAAAATAAAGTTGTATGCG 58.652 43.478 0.00 0.00 0.00 4.73
1935 1959 5.066505 CAGAGATCCCGGGAAAATAAAGTTG 59.933 44.000 30.84 12.30 0.00 3.16
1938 1962 4.781934 ACAGAGATCCCGGGAAAATAAAG 58.218 43.478 30.84 16.46 0.00 1.85
1941 1966 4.855298 AAACAGAGATCCCGGGAAAATA 57.145 40.909 30.84 3.59 0.00 1.40
1942 1967 3.739401 AAACAGAGATCCCGGGAAAAT 57.261 42.857 30.84 16.81 0.00 1.82
1981 2006 2.339400 CACGTTCGGTATGTAACACGTC 59.661 50.000 0.00 0.00 38.75 4.34
1982 2007 2.287547 ACACGTTCGGTATGTAACACGT 60.288 45.455 0.00 0.00 41.33 4.49
1983 2008 2.318578 ACACGTTCGGTATGTAACACG 58.681 47.619 0.00 0.00 0.00 4.49
1984 2009 4.025813 ACAAACACGTTCGGTATGTAACAC 60.026 41.667 0.00 0.00 0.00 3.32
1985 2010 4.025896 CACAAACACGTTCGGTATGTAACA 60.026 41.667 0.00 0.00 0.00 2.41
1986 2011 4.448005 CACAAACACGTTCGGTATGTAAC 58.552 43.478 0.00 0.00 0.00 2.50
1987 2012 3.493877 CCACAAACACGTTCGGTATGTAA 59.506 43.478 0.00 0.00 0.00 2.41
1988 2013 3.058450 CCACAAACACGTTCGGTATGTA 58.942 45.455 0.00 0.00 0.00 2.29
1989 2014 1.868498 CCACAAACACGTTCGGTATGT 59.132 47.619 0.00 0.00 0.00 2.29
1990 2015 1.868498 ACCACAAACACGTTCGGTATG 59.132 47.619 0.00 0.00 0.00 2.39
1991 2016 2.243602 ACCACAAACACGTTCGGTAT 57.756 45.000 0.00 0.00 0.00 2.73
1992 2017 2.360483 TCTACCACAAACACGTTCGGTA 59.640 45.455 0.00 0.00 0.00 4.02
1993 2018 1.136695 TCTACCACAAACACGTTCGGT 59.863 47.619 0.00 0.00 0.00 4.69
1994 2019 1.855513 TCTACCACAAACACGTTCGG 58.144 50.000 0.00 0.00 0.00 4.30
1995 2020 4.461992 AATTCTACCACAAACACGTTCG 57.538 40.909 0.00 0.00 0.00 3.95
1996 2021 5.394322 CGAAAATTCTACCACAAACACGTTC 59.606 40.000 0.00 0.00 0.00 3.95
1997 2022 5.267776 CGAAAATTCTACCACAAACACGTT 58.732 37.500 0.00 0.00 0.00 3.99
1998 2023 4.260866 CCGAAAATTCTACCACAAACACGT 60.261 41.667 0.00 0.00 0.00 4.49
1999 2024 4.215965 CCGAAAATTCTACCACAAACACG 58.784 43.478 0.00 0.00 0.00 4.49
2000 2025 3.978855 GCCGAAAATTCTACCACAAACAC 59.021 43.478 0.00 0.00 0.00 3.32
2001 2026 3.632604 TGCCGAAAATTCTACCACAAACA 59.367 39.130 0.00 0.00 0.00 2.83
2002 2027 4.231718 TGCCGAAAATTCTACCACAAAC 57.768 40.909 0.00 0.00 0.00 2.93
2003 2028 4.261825 CCTTGCCGAAAATTCTACCACAAA 60.262 41.667 0.00 0.00 0.00 2.83
2004 2029 3.254657 CCTTGCCGAAAATTCTACCACAA 59.745 43.478 0.00 0.00 0.00 3.33
2005 2030 2.817258 CCTTGCCGAAAATTCTACCACA 59.183 45.455 0.00 0.00 0.00 4.17
2006 2031 3.078837 TCCTTGCCGAAAATTCTACCAC 58.921 45.455 0.00 0.00 0.00 4.16
2007 2032 3.343617 CTCCTTGCCGAAAATTCTACCA 58.656 45.455 0.00 0.00 0.00 3.25
2008 2033 2.097629 GCTCCTTGCCGAAAATTCTACC 59.902 50.000 0.00 0.00 35.15 3.18
2009 2034 3.406728 GCTCCTTGCCGAAAATTCTAC 57.593 47.619 0.00 0.00 35.15 2.59
2021 2046 4.785453 CGACTGGGGGCTCCTTGC 62.785 72.222 4.32 0.00 41.94 4.01
2022 2047 3.316573 GACGACTGGGGGCTCCTTG 62.317 68.421 4.32 0.00 36.20 3.61
2023 2048 2.164332 TAGACGACTGGGGGCTCCTT 62.164 60.000 4.32 0.00 36.20 3.36
2024 2049 2.623450 TAGACGACTGGGGGCTCCT 61.623 63.158 4.32 0.00 36.20 3.69
2025 2050 2.043248 TAGACGACTGGGGGCTCC 60.043 66.667 0.00 0.00 0.00 4.70
2026 2051 1.255667 TTGTAGACGACTGGGGGCTC 61.256 60.000 0.00 0.00 0.00 4.70
2027 2052 1.229082 TTGTAGACGACTGGGGGCT 60.229 57.895 0.00 0.00 0.00 5.19
2028 2053 1.218316 CTTGTAGACGACTGGGGGC 59.782 63.158 0.00 0.00 0.00 5.80
2029 2054 1.218316 GCTTGTAGACGACTGGGGG 59.782 63.158 0.00 0.00 0.00 5.40
2030 2055 1.218316 GGCTTGTAGACGACTGGGG 59.782 63.158 0.00 0.00 0.00 4.96
2031 2056 4.913126 GGCTTGTAGACGACTGGG 57.087 61.111 0.00 0.00 0.00 4.45
2038 2063 2.450609 TTGAGAACCGGCTTGTAGAC 57.549 50.000 0.00 0.00 0.00 2.59
2039 2064 3.478857 TTTTGAGAACCGGCTTGTAGA 57.521 42.857 0.00 0.00 0.00 2.59
2040 2065 3.751175 TCATTTTGAGAACCGGCTTGTAG 59.249 43.478 0.00 0.00 0.00 2.74
2041 2066 3.745799 TCATTTTGAGAACCGGCTTGTA 58.254 40.909 0.00 0.00 0.00 2.41
2042 2067 2.582052 TCATTTTGAGAACCGGCTTGT 58.418 42.857 0.00 0.00 0.00 3.16
2043 2068 3.641437 TTCATTTTGAGAACCGGCTTG 57.359 42.857 0.00 0.00 0.00 4.01
2044 2069 6.530019 AATATTCATTTTGAGAACCGGCTT 57.470 33.333 0.00 0.00 0.00 4.35
2045 2070 6.530019 AAATATTCATTTTGAGAACCGGCT 57.470 33.333 0.00 0.00 29.80 5.52
2046 2071 8.696410 TTAAAATATTCATTTTGAGAACCGGC 57.304 30.769 0.00 0.00 42.85 6.13
2059 2084 9.950680 CTCGTGTAAGCCAATTAAAATATTCAT 57.049 29.630 0.00 0.00 0.00 2.57
2060 2085 8.952278 ACTCGTGTAAGCCAATTAAAATATTCA 58.048 29.630 0.00 0.00 0.00 2.57
2067 2092 9.217278 TGTAAATACTCGTGTAAGCCAATTAAA 57.783 29.630 0.87 0.00 31.80 1.52
2068 2093 8.774890 TGTAAATACTCGTGTAAGCCAATTAA 57.225 30.769 0.87 0.00 31.80 1.40
2069 2094 8.951787 ATGTAAATACTCGTGTAAGCCAATTA 57.048 30.769 0.87 0.00 31.80 1.40
2070 2095 7.859325 ATGTAAATACTCGTGTAAGCCAATT 57.141 32.000 0.87 0.00 31.80 2.32
2071 2096 9.555727 AATATGTAAATACTCGTGTAAGCCAAT 57.444 29.630 0.87 0.00 31.80 3.16
2072 2097 8.951787 AATATGTAAATACTCGTGTAAGCCAA 57.048 30.769 0.87 0.00 31.80 4.52
2073 2098 8.951787 AAATATGTAAATACTCGTGTAAGCCA 57.048 30.769 0.87 0.00 31.80 4.75
2074 2099 9.037737 TGAAATATGTAAATACTCGTGTAAGCC 57.962 33.333 0.87 0.00 31.80 4.35
2095 2120 9.232473 GTGTCCTAGTTTCTCCTAAATTGAAAT 57.768 33.333 0.00 0.00 33.20 2.17
2096 2121 8.215050 TGTGTCCTAGTTTCTCCTAAATTGAAA 58.785 33.333 0.00 0.00 0.00 2.69
2097 2122 7.741785 TGTGTCCTAGTTTCTCCTAAATTGAA 58.258 34.615 0.00 0.00 0.00 2.69
2098 2123 7.311092 TGTGTCCTAGTTTCTCCTAAATTGA 57.689 36.000 0.00 0.00 0.00 2.57
2099 2124 7.414540 GCATGTGTCCTAGTTTCTCCTAAATTG 60.415 40.741 0.00 0.00 0.00 2.32
2100 2125 6.599638 GCATGTGTCCTAGTTTCTCCTAAATT 59.400 38.462 0.00 0.00 0.00 1.82
2101 2126 6.116126 GCATGTGTCCTAGTTTCTCCTAAAT 58.884 40.000 0.00 0.00 0.00 1.40
2102 2127 5.488341 GCATGTGTCCTAGTTTCTCCTAAA 58.512 41.667 0.00 0.00 0.00 1.85
2103 2128 4.081087 GGCATGTGTCCTAGTTTCTCCTAA 60.081 45.833 0.00 0.00 0.00 2.69
2104 2129 3.451178 GGCATGTGTCCTAGTTTCTCCTA 59.549 47.826 0.00 0.00 0.00 2.94
2105 2130 2.237392 GGCATGTGTCCTAGTTTCTCCT 59.763 50.000 0.00 0.00 0.00 3.69
2106 2131 2.633488 GGCATGTGTCCTAGTTTCTCC 58.367 52.381 0.00 0.00 0.00 3.71
2107 2132 2.633488 GGGCATGTGTCCTAGTTTCTC 58.367 52.381 0.00 0.00 36.72 2.87
2108 2133 1.066143 CGGGCATGTGTCCTAGTTTCT 60.066 52.381 1.74 0.00 37.76 2.52
2109 2134 1.338769 ACGGGCATGTGTCCTAGTTTC 60.339 52.381 1.74 0.00 37.76 2.78
2110 2135 0.690762 ACGGGCATGTGTCCTAGTTT 59.309 50.000 1.74 0.00 37.76 2.66
2117 2142 3.353836 AACGCACGGGCATGTGTC 61.354 61.111 11.77 1.81 42.42 3.67
2142 2167 7.521669 AGCTAGAGGCATGTAATTTTATCCTT 58.478 34.615 0.00 0.00 44.79 3.36
2193 2218 6.525578 TGAACTAGAGAATACGGACATGTT 57.474 37.500 0.00 0.00 0.00 2.71
2268 2293 1.268352 TGAAACAACTTATGGGCACGC 59.732 47.619 0.00 0.00 0.00 5.34
2280 2305 5.798434 GCCGGTCAATTATAGTTGAAACAAC 59.202 40.000 11.80 6.53 39.61 3.32
2290 2315 8.553459 AAAGAGAATATGCCGGTCAATTATAG 57.447 34.615 1.90 0.00 0.00 1.31
2298 2323 6.564125 CGTCAATAAAAGAGAATATGCCGGTC 60.564 42.308 1.90 0.00 0.00 4.79
2354 2379 4.881850 CGGCTTGTTTAGAATAAGGGACAT 59.118 41.667 0.51 0.00 31.12 3.06
2384 2410 0.957888 TCCGCATCCAACGCATCAAA 60.958 50.000 0.00 0.00 0.00 2.69
2415 2441 1.732732 CGTGAGTTCGATCACTCCCAC 60.733 57.143 15.24 7.90 46.04 4.61
2460 2486 2.414559 CGCATTTGTTTGAGTGGCTAGG 60.415 50.000 0.00 0.00 0.00 3.02
2593 2621 1.606994 GGAAAATTGTTCGGGTTGCCC 60.607 52.381 0.00 0.00 41.09 5.36
2661 2693 8.171840 TCAACAAATGTTCCGTTCAAATTTTTC 58.828 29.630 0.00 0.00 35.83 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.