Multiple sequence alignment - TraesCS5B01G506300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G506300 | chr5B | 100.000 | 5928 | 0 | 0 | 1 | 5928 | 671715327 | 671709400 | 0.000000e+00 | 10948.0 |
1 | TraesCS5B01G506300 | chr5B | 84.823 | 1891 | 177 | 52 | 3282 | 5145 | 671494367 | 671496174 | 0.000000e+00 | 1801.0 |
2 | TraesCS5B01G506300 | chr5B | 77.993 | 1654 | 235 | 61 | 1433 | 3031 | 671503150 | 671504729 | 0.000000e+00 | 918.0 |
3 | TraesCS5B01G506300 | chr5B | 87.484 | 791 | 62 | 13 | 1634 | 2390 | 671487669 | 671488456 | 0.000000e+00 | 878.0 |
4 | TraesCS5B01G506300 | chr5B | 90.712 | 646 | 45 | 5 | 957 | 1587 | 671487020 | 671487665 | 0.000000e+00 | 846.0 |
5 | TraesCS5B01G506300 | chr5B | 81.908 | 912 | 137 | 17 | 4149 | 5039 | 671506663 | 671507567 | 0.000000e+00 | 745.0 |
6 | TraesCS5B01G506300 | chr5B | 87.662 | 616 | 53 | 17 | 2444 | 3054 | 671493732 | 671494329 | 0.000000e+00 | 695.0 |
7 | TraesCS5B01G506300 | chr5B | 83.401 | 494 | 68 | 5 | 3504 | 3990 | 671505956 | 671506442 | 4.210000e-121 | 446.0 |
8 | TraesCS5B01G506300 | chr5B | 78.571 | 714 | 122 | 25 | 1004 | 1701 | 671706458 | 671707156 | 5.450000e-120 | 442.0 |
9 | TraesCS5B01G506300 | chr5B | 90.991 | 111 | 8 | 2 | 5690 | 5798 | 671496637 | 671496747 | 1.330000e-31 | 148.0 |
10 | TraesCS5B01G506300 | chr5B | 82.877 | 146 | 25 | 0 | 1934 | 2079 | 671356182 | 671356037 | 1.340000e-26 | 132.0 |
11 | TraesCS5B01G506300 | chr5D | 94.734 | 4975 | 169 | 41 | 506 | 5432 | 532279439 | 532274510 | 0.000000e+00 | 7649.0 |
12 | TraesCS5B01G506300 | chr5D | 80.280 | 715 | 110 | 21 | 1011 | 1707 | 534605586 | 534606287 | 1.470000e-140 | 510.0 |
13 | TraesCS5B01G506300 | chr5D | 77.024 | 914 | 162 | 35 | 1019 | 1905 | 532248792 | 532247900 | 1.160000e-131 | 481.0 |
14 | TraesCS5B01G506300 | chr5D | 93.189 | 323 | 14 | 1 | 5614 | 5928 | 532274325 | 532274003 | 9.000000e-128 | 468.0 |
15 | TraesCS5B01G506300 | chr5D | 78.732 | 710 | 120 | 24 | 1004 | 1701 | 532271366 | 532272056 | 4.210000e-121 | 446.0 |
16 | TraesCS5B01G506300 | chr5D | 74.882 | 211 | 51 | 1 | 1930 | 2138 | 532272327 | 532272537 | 1.760000e-15 | 95.3 |
17 | TraesCS5B01G506300 | chr5D | 96.364 | 55 | 2 | 0 | 5469 | 5523 | 532274509 | 532274455 | 2.280000e-14 | 91.6 |
18 | TraesCS5B01G506300 | chr4A | 93.335 | 4966 | 226 | 45 | 355 | 5260 | 639992848 | 639997768 | 0.000000e+00 | 7239.0 |
19 | TraesCS5B01G506300 | chr4A | 80.553 | 1049 | 142 | 38 | 3489 | 4496 | 637194890 | 637193863 | 0.000000e+00 | 750.0 |
20 | TraesCS5B01G506300 | chr4A | 90.149 | 538 | 30 | 11 | 871 | 1391 | 639961919 | 639962450 | 0.000000e+00 | 678.0 |
21 | TraesCS5B01G506300 | chr4A | 81.286 | 871 | 130 | 17 | 4191 | 5045 | 637229067 | 637228214 | 0.000000e+00 | 675.0 |
22 | TraesCS5B01G506300 | chr4A | 81.319 | 728 | 96 | 16 | 4099 | 4812 | 637204503 | 637203802 | 6.710000e-154 | 555.0 |
23 | TraesCS5B01G506300 | chr4A | 75.379 | 1121 | 202 | 52 | 1007 | 2079 | 640002539 | 640003633 | 1.930000e-129 | 473.0 |
24 | TraesCS5B01G506300 | chr4A | 93.168 | 322 | 15 | 1 | 5614 | 5928 | 639997975 | 639998296 | 3.240000e-127 | 466.0 |
25 | TraesCS5B01G506300 | chr4A | 78.631 | 716 | 122 | 24 | 1004 | 1707 | 640001127 | 640000431 | 4.210000e-121 | 446.0 |
26 | TraesCS5B01G506300 | chr4A | 93.496 | 123 | 7 | 1 | 5501 | 5623 | 639997794 | 639997915 | 1.310000e-41 | 182.0 |
27 | TraesCS5B01G506300 | chr4A | 83.505 | 194 | 24 | 5 | 4862 | 5048 | 637203791 | 637203599 | 2.200000e-39 | 174.0 |
28 | TraesCS5B01G506300 | chr4A | 80.000 | 210 | 41 | 1 | 1930 | 2138 | 640000166 | 639999957 | 2.860000e-33 | 154.0 |
29 | TraesCS5B01G506300 | chr4B | 89.546 | 2114 | 149 | 23 | 946 | 3024 | 15421299 | 15419223 | 0.000000e+00 | 2614.0 |
30 | TraesCS5B01G506300 | chr4B | 89.541 | 2113 | 150 | 22 | 946 | 3024 | 14533798 | 14531723 | 0.000000e+00 | 2612.0 |
31 | TraesCS5B01G506300 | chr4B | 95.824 | 1317 | 40 | 7 | 3057 | 4373 | 14531729 | 14530428 | 0.000000e+00 | 2113.0 |
32 | TraesCS5B01G506300 | chr4B | 95.537 | 1098 | 34 | 7 | 3276 | 4373 | 15418895 | 15417813 | 0.000000e+00 | 1742.0 |
33 | TraesCS5B01G506300 | chr4B | 96.283 | 565 | 21 | 0 | 4330 | 4894 | 15417772 | 15417208 | 0.000000e+00 | 928.0 |
34 | TraesCS5B01G506300 | chr4B | 96.106 | 565 | 22 | 0 | 4330 | 4894 | 14530387 | 14529823 | 0.000000e+00 | 922.0 |
35 | TraesCS5B01G506300 | chr4B | 92.308 | 325 | 15 | 2 | 5614 | 5928 | 14529450 | 14529126 | 2.520000e-123 | 453.0 |
36 | TraesCS5B01G506300 | chr4B | 98.190 | 221 | 4 | 0 | 3057 | 3277 | 15419229 | 15419009 | 2.590000e-103 | 387.0 |
37 | TraesCS5B01G506300 | chr4B | 93.960 | 149 | 9 | 0 | 5620 | 5768 | 15416815 | 15416667 | 5.980000e-55 | 226.0 |
38 | TraesCS5B01G506300 | chr4B | 89.286 | 140 | 5 | 2 | 5799 | 5928 | 15416672 | 15416533 | 3.670000e-37 | 167.0 |
39 | TraesCS5B01G506300 | chr4B | 87.500 | 144 | 13 | 4 | 5480 | 5623 | 14529648 | 14529510 | 1.710000e-35 | 161.0 |
40 | TraesCS5B01G506300 | chr2D | 90.390 | 333 | 20 | 2 | 2202 | 2522 | 605563107 | 605562775 | 1.530000e-115 | 427.0 |
41 | TraesCS5B01G506300 | chrUn | 98.190 | 221 | 4 | 0 | 3057 | 3277 | 479679219 | 479678999 | 2.590000e-103 | 387.0 |
42 | TraesCS5B01G506300 | chrUn | 97.191 | 178 | 5 | 0 | 2847 | 3024 | 479679390 | 479679213 | 9.650000e-78 | 302.0 |
43 | TraesCS5B01G506300 | chr7D | 92.683 | 164 | 10 | 2 | 5144 | 5306 | 397554913 | 397555075 | 9.930000e-58 | 235.0 |
44 | TraesCS5B01G506300 | chr4D | 91.765 | 170 | 12 | 2 | 5141 | 5309 | 64390638 | 64390470 | 9.930000e-58 | 235.0 |
45 | TraesCS5B01G506300 | chr7A | 92.547 | 161 | 10 | 2 | 5147 | 5306 | 451519972 | 451519813 | 4.620000e-56 | 230.0 |
46 | TraesCS5B01G506300 | chr7A | 92.073 | 164 | 11 | 2 | 5147 | 5309 | 494786990 | 494786828 | 4.620000e-56 | 230.0 |
47 | TraesCS5B01G506300 | chr6D | 92.073 | 164 | 11 | 2 | 5144 | 5306 | 48458137 | 48457975 | 4.620000e-56 | 230.0 |
48 | TraesCS5B01G506300 | chr1A | 91.617 | 167 | 13 | 1 | 5144 | 5309 | 39439002 | 39438836 | 4.620000e-56 | 230.0 |
49 | TraesCS5B01G506300 | chr1D | 90.286 | 175 | 15 | 2 | 5133 | 5306 | 225704960 | 225704787 | 1.660000e-55 | 228.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G506300 | chr5B | 671709400 | 671715327 | 5927 | True | 10948.000000 | 10948 | 100.000000 | 1 | 5928 | 1 | chr5B.!!$R2 | 5927 |
1 | TraesCS5B01G506300 | chr5B | 671493732 | 671496747 | 3015 | False | 881.333333 | 1801 | 87.825333 | 2444 | 5798 | 3 | chr5B.!!$F3 | 3354 |
2 | TraesCS5B01G506300 | chr5B | 671487020 | 671488456 | 1436 | False | 862.000000 | 878 | 89.098000 | 957 | 2390 | 2 | chr5B.!!$F2 | 1433 |
3 | TraesCS5B01G506300 | chr5B | 671503150 | 671507567 | 4417 | False | 703.000000 | 918 | 81.100667 | 1433 | 5039 | 3 | chr5B.!!$F4 | 3606 |
4 | TraesCS5B01G506300 | chr5B | 671706458 | 671707156 | 698 | False | 442.000000 | 442 | 78.571000 | 1004 | 1701 | 1 | chr5B.!!$F1 | 697 |
5 | TraesCS5B01G506300 | chr5D | 532274003 | 532279439 | 5436 | True | 2736.200000 | 7649 | 94.762333 | 506 | 5928 | 3 | chr5D.!!$R2 | 5422 |
6 | TraesCS5B01G506300 | chr5D | 534605586 | 534606287 | 701 | False | 510.000000 | 510 | 80.280000 | 1011 | 1707 | 1 | chr5D.!!$F1 | 696 |
7 | TraesCS5B01G506300 | chr5D | 532247900 | 532248792 | 892 | True | 481.000000 | 481 | 77.024000 | 1019 | 1905 | 1 | chr5D.!!$R1 | 886 |
8 | TraesCS5B01G506300 | chr5D | 532271366 | 532272537 | 1171 | False | 270.650000 | 446 | 76.807000 | 1004 | 2138 | 2 | chr5D.!!$F2 | 1134 |
9 | TraesCS5B01G506300 | chr4A | 639992848 | 639998296 | 5448 | False | 2629.000000 | 7239 | 93.333000 | 355 | 5928 | 3 | chr4A.!!$F3 | 5573 |
10 | TraesCS5B01G506300 | chr4A | 637193863 | 637194890 | 1027 | True | 750.000000 | 750 | 80.553000 | 3489 | 4496 | 1 | chr4A.!!$R1 | 1007 |
11 | TraesCS5B01G506300 | chr4A | 639961919 | 639962450 | 531 | False | 678.000000 | 678 | 90.149000 | 871 | 1391 | 1 | chr4A.!!$F1 | 520 |
12 | TraesCS5B01G506300 | chr4A | 637228214 | 637229067 | 853 | True | 675.000000 | 675 | 81.286000 | 4191 | 5045 | 1 | chr4A.!!$R2 | 854 |
13 | TraesCS5B01G506300 | chr4A | 640002539 | 640003633 | 1094 | False | 473.000000 | 473 | 75.379000 | 1007 | 2079 | 1 | chr4A.!!$F2 | 1072 |
14 | TraesCS5B01G506300 | chr4A | 637203599 | 637204503 | 904 | True | 364.500000 | 555 | 82.412000 | 4099 | 5048 | 2 | chr4A.!!$R3 | 949 |
15 | TraesCS5B01G506300 | chr4A | 639999957 | 640001127 | 1170 | True | 300.000000 | 446 | 79.315500 | 1004 | 2138 | 2 | chr4A.!!$R4 | 1134 |
16 | TraesCS5B01G506300 | chr4B | 14529126 | 14533798 | 4672 | True | 1252.200000 | 2612 | 92.255800 | 946 | 5928 | 5 | chr4B.!!$R1 | 4982 |
17 | TraesCS5B01G506300 | chr4B | 15416533 | 15421299 | 4766 | True | 1010.666667 | 2614 | 93.800333 | 946 | 5928 | 6 | chr4B.!!$R2 | 4982 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
484 | 485 | 0.031449 | TCGCTGACACGAACATGACA | 59.969 | 50.000 | 0.00 | 0.0 | 39.54 | 3.58 | F |
967 | 1006 | 0.250081 | GATCCGATCTGGTTGAGCCC | 60.250 | 60.000 | 0.75 | 0.0 | 39.52 | 5.19 | F |
2173 | 2336 | 0.044092 | TCAGCAAGGGGTATGGGAGA | 59.956 | 55.000 | 0.00 | 0.0 | 0.00 | 3.71 | F |
2274 | 2437 | 2.038164 | TGACTGCTTCAGACATGCTCTT | 59.962 | 45.455 | 0.29 | 0.0 | 32.09 | 2.85 | F |
3481 | 4438 | 3.581755 | GCATTTGTGTGCATCTCATTGT | 58.418 | 40.909 | 0.00 | 0.0 | 44.43 | 2.71 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2129 | 2291 | 0.457851 | CCTCCTCAGTAGGTTCAGCG | 59.542 | 60.000 | 0.00 | 0.0 | 44.09 | 5.18 | R |
2700 | 2897 | 2.672098 | TCTGAGGAAGAGGAGCCATAC | 58.328 | 52.381 | 0.00 | 0.0 | 0.00 | 2.39 | R |
3626 | 4790 | 0.400213 | ATCCGTCTGACCTTTGCCAA | 59.600 | 50.000 | 1.55 | 0.0 | 0.00 | 4.52 | R |
3717 | 4881 | 3.196469 | TCTCTGGACTCTTGGCAACTATG | 59.804 | 47.826 | 0.00 | 0.0 | 37.61 | 2.23 | R |
4957 | 6364 | 1.003118 | GGGCGTCCCATGCATATCTTA | 59.997 | 52.381 | 0.00 | 0.0 | 44.65 | 2.10 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.838152 | CTGGGACCCGCGATGGTG | 62.838 | 72.222 | 11.99 | 0.00 | 39.24 | 4.17 |
26 | 27 | 4.504596 | GCGATGGTGGGGCATGGA | 62.505 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
27 | 28 | 2.516930 | CGATGGTGGGGCATGGAC | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
28 | 29 | 2.516930 | GATGGTGGGGCATGGACG | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
29 | 30 | 3.338250 | ATGGTGGGGCATGGACGT | 61.338 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
30 | 31 | 3.643595 | ATGGTGGGGCATGGACGTG | 62.644 | 63.158 | 0.00 | 0.00 | 0.00 | 4.49 |
32 | 33 | 4.028490 | GTGGGGCATGGACGTGGA | 62.028 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
33 | 34 | 4.028490 | TGGGGCATGGACGTGGAC | 62.028 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
48 | 49 | 4.465512 | GACGTTGCCGCTGCCATG | 62.466 | 66.667 | 0.00 | 0.00 | 37.70 | 3.66 |
61 | 62 | 3.499737 | CCATGCACGCCGGAGTTC | 61.500 | 66.667 | 8.62 | 4.06 | 0.00 | 3.01 |
62 | 63 | 3.853330 | CATGCACGCCGGAGTTCG | 61.853 | 66.667 | 8.62 | 2.18 | 38.88 | 3.95 |
63 | 64 | 4.373116 | ATGCACGCCGGAGTTCGT | 62.373 | 61.111 | 8.62 | 1.47 | 39.79 | 3.85 |
161 | 162 | 4.329545 | TGGCAGCCACCTCCGTTC | 62.330 | 66.667 | 11.22 | 0.00 | 0.00 | 3.95 |
163 | 164 | 4.681978 | GCAGCCACCTCCGTTCGT | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
164 | 165 | 2.432628 | CAGCCACCTCCGTTCGTC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
165 | 166 | 4.052229 | AGCCACCTCCGTTCGTCG | 62.052 | 66.667 | 0.00 | 0.00 | 39.52 | 5.12 |
166 | 167 | 4.047059 | GCCACCTCCGTTCGTCGA | 62.047 | 66.667 | 0.00 | 0.00 | 42.86 | 4.20 |
167 | 168 | 2.126580 | CCACCTCCGTTCGTCGAC | 60.127 | 66.667 | 5.18 | 5.18 | 42.86 | 4.20 |
168 | 169 | 2.126580 | CACCTCCGTTCGTCGACC | 60.127 | 66.667 | 10.58 | 0.00 | 42.86 | 4.79 |
169 | 170 | 2.282040 | ACCTCCGTTCGTCGACCT | 60.282 | 61.111 | 10.58 | 0.00 | 42.86 | 3.85 |
170 | 171 | 2.331132 | ACCTCCGTTCGTCGACCTC | 61.331 | 63.158 | 10.58 | 0.00 | 42.86 | 3.85 |
171 | 172 | 2.330372 | CCTCCGTTCGTCGACCTCA | 61.330 | 63.158 | 10.58 | 0.00 | 42.86 | 3.86 |
172 | 173 | 1.154263 | CTCCGTTCGTCGACCTCAC | 60.154 | 63.158 | 10.58 | 3.17 | 42.86 | 3.51 |
173 | 174 | 2.126580 | CCGTTCGTCGACCTCACC | 60.127 | 66.667 | 10.58 | 0.00 | 42.86 | 4.02 |
174 | 175 | 2.640989 | CGTTCGTCGACCTCACCA | 59.359 | 61.111 | 10.58 | 0.00 | 42.86 | 4.17 |
175 | 176 | 1.728426 | CGTTCGTCGACCTCACCAC | 60.728 | 63.158 | 10.58 | 0.00 | 42.86 | 4.16 |
176 | 177 | 1.728426 | GTTCGTCGACCTCACCACG | 60.728 | 63.158 | 10.58 | 0.00 | 0.00 | 4.94 |
177 | 178 | 2.911484 | TTCGTCGACCTCACCACGG | 61.911 | 63.158 | 10.58 | 0.00 | 33.02 | 4.94 |
178 | 179 | 3.359523 | CGTCGACCTCACCACGGA | 61.360 | 66.667 | 10.58 | 0.00 | 0.00 | 4.69 |
179 | 180 | 2.697761 | CGTCGACCTCACCACGGAT | 61.698 | 63.158 | 10.58 | 0.00 | 0.00 | 4.18 |
180 | 181 | 1.153823 | GTCGACCTCACCACGGATG | 60.154 | 63.158 | 3.51 | 0.00 | 0.00 | 3.51 |
190 | 191 | 4.794439 | CACGGATGGCAGCGACGA | 62.794 | 66.667 | 8.33 | 0.00 | 0.00 | 4.20 |
191 | 192 | 3.838271 | ACGGATGGCAGCGACGAT | 61.838 | 61.111 | 8.33 | 0.00 | 0.00 | 3.73 |
192 | 193 | 3.333189 | CGGATGGCAGCGACGATG | 61.333 | 66.667 | 9.11 | 9.11 | 0.00 | 3.84 |
193 | 194 | 2.202932 | GGATGGCAGCGACGATGT | 60.203 | 61.111 | 15.31 | 0.00 | 0.00 | 3.06 |
194 | 195 | 2.240500 | GGATGGCAGCGACGATGTC | 61.241 | 63.158 | 11.38 | 11.38 | 0.00 | 3.06 |
209 | 210 | 6.380111 | GACGATGTCGACTAGTACTAGATC | 57.620 | 45.833 | 31.93 | 22.07 | 43.02 | 2.75 |
210 | 211 | 6.088016 | ACGATGTCGACTAGTACTAGATCT | 57.912 | 41.667 | 31.93 | 13.38 | 43.02 | 2.75 |
211 | 212 | 7.213216 | ACGATGTCGACTAGTACTAGATCTA | 57.787 | 40.000 | 31.93 | 16.33 | 43.02 | 1.98 |
212 | 213 | 7.307694 | ACGATGTCGACTAGTACTAGATCTAG | 58.692 | 42.308 | 31.93 | 25.26 | 43.02 | 2.43 |
213 | 214 | 6.748658 | CGATGTCGACTAGTACTAGATCTAGG | 59.251 | 46.154 | 31.93 | 15.74 | 43.02 | 3.02 |
214 | 215 | 6.975196 | TGTCGACTAGTACTAGATCTAGGT | 57.025 | 41.667 | 31.93 | 18.46 | 38.24 | 3.08 |
215 | 216 | 7.358770 | TGTCGACTAGTACTAGATCTAGGTT | 57.641 | 40.000 | 31.93 | 17.71 | 38.24 | 3.50 |
216 | 217 | 7.790027 | TGTCGACTAGTACTAGATCTAGGTTT | 58.210 | 38.462 | 31.93 | 17.41 | 38.24 | 3.27 |
217 | 218 | 8.263640 | TGTCGACTAGTACTAGATCTAGGTTTT | 58.736 | 37.037 | 31.93 | 13.79 | 38.24 | 2.43 |
218 | 219 | 9.757227 | GTCGACTAGTACTAGATCTAGGTTTTA | 57.243 | 37.037 | 31.93 | 12.87 | 38.24 | 1.52 |
219 | 220 | 9.979578 | TCGACTAGTACTAGATCTAGGTTTTAG | 57.020 | 37.037 | 31.93 | 23.69 | 38.24 | 1.85 |
220 | 221 | 9.762933 | CGACTAGTACTAGATCTAGGTTTTAGT | 57.237 | 37.037 | 31.93 | 25.88 | 38.24 | 2.24 |
279 | 280 | 8.420374 | AAGTTTAATGTATGATAGTGGACGTG | 57.580 | 34.615 | 0.00 | 0.00 | 0.00 | 4.49 |
280 | 281 | 7.778083 | AGTTTAATGTATGATAGTGGACGTGA | 58.222 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
281 | 282 | 8.255206 | AGTTTAATGTATGATAGTGGACGTGAA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
282 | 283 | 7.997107 | TTAATGTATGATAGTGGACGTGAAC | 57.003 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
283 | 284 | 5.854010 | ATGTATGATAGTGGACGTGAACT | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
284 | 285 | 5.654603 | TGTATGATAGTGGACGTGAACTT | 57.345 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
285 | 286 | 6.032956 | TGTATGATAGTGGACGTGAACTTT | 57.967 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
286 | 287 | 6.460781 | TGTATGATAGTGGACGTGAACTTTT | 58.539 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
287 | 288 | 5.862924 | ATGATAGTGGACGTGAACTTTTG | 57.137 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
288 | 289 | 4.062293 | TGATAGTGGACGTGAACTTTTGG | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
289 | 290 | 2.413310 | AGTGGACGTGAACTTTTGGT | 57.587 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
290 | 291 | 3.547054 | AGTGGACGTGAACTTTTGGTA | 57.453 | 42.857 | 0.00 | 0.00 | 0.00 | 3.25 |
291 | 292 | 4.081322 | AGTGGACGTGAACTTTTGGTAT | 57.919 | 40.909 | 0.00 | 0.00 | 0.00 | 2.73 |
292 | 293 | 3.813166 | AGTGGACGTGAACTTTTGGTATG | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
293 | 294 | 2.550606 | TGGACGTGAACTTTTGGTATGC | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 3.14 |
294 | 295 | 2.550606 | GGACGTGAACTTTTGGTATGCA | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
295 | 296 | 3.190535 | GGACGTGAACTTTTGGTATGCAT | 59.809 | 43.478 | 3.79 | 3.79 | 0.00 | 3.96 |
296 | 297 | 4.158384 | GACGTGAACTTTTGGTATGCATG | 58.842 | 43.478 | 10.16 | 0.00 | 0.00 | 4.06 |
297 | 298 | 3.057596 | ACGTGAACTTTTGGTATGCATGG | 60.058 | 43.478 | 10.16 | 0.00 | 0.00 | 3.66 |
298 | 299 | 3.057596 | CGTGAACTTTTGGTATGCATGGT | 60.058 | 43.478 | 10.16 | 0.00 | 0.00 | 3.55 |
299 | 300 | 4.558496 | CGTGAACTTTTGGTATGCATGGTT | 60.558 | 41.667 | 10.16 | 3.09 | 0.00 | 3.67 |
300 | 301 | 5.296748 | GTGAACTTTTGGTATGCATGGTTT | 58.703 | 37.500 | 10.16 | 0.00 | 0.00 | 3.27 |
301 | 302 | 6.451393 | GTGAACTTTTGGTATGCATGGTTTA | 58.549 | 36.000 | 10.16 | 0.00 | 0.00 | 2.01 |
302 | 303 | 6.926272 | GTGAACTTTTGGTATGCATGGTTTAA | 59.074 | 34.615 | 10.16 | 0.00 | 0.00 | 1.52 |
303 | 304 | 7.602265 | GTGAACTTTTGGTATGCATGGTTTAAT | 59.398 | 33.333 | 10.16 | 0.00 | 0.00 | 1.40 |
304 | 305 | 8.153550 | TGAACTTTTGGTATGCATGGTTTAATT | 58.846 | 29.630 | 10.16 | 0.00 | 0.00 | 1.40 |
305 | 306 | 8.916628 | AACTTTTGGTATGCATGGTTTAATTT | 57.083 | 26.923 | 10.16 | 0.00 | 0.00 | 1.82 |
306 | 307 | 8.321650 | ACTTTTGGTATGCATGGTTTAATTTG | 57.678 | 30.769 | 10.16 | 0.00 | 0.00 | 2.32 |
307 | 308 | 8.153550 | ACTTTTGGTATGCATGGTTTAATTTGA | 58.846 | 29.630 | 10.16 | 0.00 | 0.00 | 2.69 |
308 | 309 | 9.165035 | CTTTTGGTATGCATGGTTTAATTTGAT | 57.835 | 29.630 | 10.16 | 0.00 | 0.00 | 2.57 |
309 | 310 | 9.512588 | TTTTGGTATGCATGGTTTAATTTGATT | 57.487 | 25.926 | 10.16 | 0.00 | 0.00 | 2.57 |
310 | 311 | 9.512588 | TTTGGTATGCATGGTTTAATTTGATTT | 57.487 | 25.926 | 10.16 | 0.00 | 0.00 | 2.17 |
311 | 312 | 9.512588 | TTGGTATGCATGGTTTAATTTGATTTT | 57.487 | 25.926 | 10.16 | 0.00 | 0.00 | 1.82 |
312 | 313 | 8.944029 | TGGTATGCATGGTTTAATTTGATTTTG | 58.056 | 29.630 | 10.16 | 0.00 | 0.00 | 2.44 |
313 | 314 | 7.909641 | GGTATGCATGGTTTAATTTGATTTTGC | 59.090 | 33.333 | 10.16 | 0.00 | 0.00 | 3.68 |
314 | 315 | 6.872628 | TGCATGGTTTAATTTGATTTTGCA | 57.127 | 29.167 | 0.00 | 0.00 | 34.33 | 4.08 |
315 | 316 | 7.268199 | TGCATGGTTTAATTTGATTTTGCAA | 57.732 | 28.000 | 0.00 | 0.00 | 33.85 | 4.08 |
316 | 317 | 7.709947 | TGCATGGTTTAATTTGATTTTGCAAA | 58.290 | 26.923 | 8.05 | 8.05 | 41.49 | 3.68 |
317 | 318 | 8.192774 | TGCATGGTTTAATTTGATTTTGCAAAA | 58.807 | 25.926 | 25.76 | 25.76 | 40.72 | 2.44 |
318 | 319 | 9.194271 | GCATGGTTTAATTTGATTTTGCAAAAT | 57.806 | 25.926 | 32.11 | 32.11 | 40.72 | 1.82 |
320 | 321 | 9.694137 | ATGGTTTAATTTGATTTTGCAAAATGG | 57.306 | 25.926 | 35.57 | 0.00 | 40.72 | 3.16 |
321 | 322 | 8.139989 | TGGTTTAATTTGATTTTGCAAAATGGG | 58.860 | 29.630 | 35.57 | 0.00 | 40.72 | 4.00 |
322 | 323 | 8.355913 | GGTTTAATTTGATTTTGCAAAATGGGA | 58.644 | 29.630 | 35.57 | 22.16 | 40.72 | 4.37 |
323 | 324 | 9.911138 | GTTTAATTTGATTTTGCAAAATGGGAT | 57.089 | 25.926 | 35.57 | 23.13 | 40.72 | 3.85 |
325 | 326 | 5.859521 | TTTGATTTTGCAAAATGGGATCG | 57.140 | 34.783 | 35.57 | 0.00 | 38.64 | 3.69 |
326 | 327 | 4.533919 | TGATTTTGCAAAATGGGATCGT | 57.466 | 36.364 | 35.57 | 15.10 | 38.64 | 3.73 |
327 | 328 | 4.493547 | TGATTTTGCAAAATGGGATCGTC | 58.506 | 39.130 | 35.57 | 21.97 | 38.64 | 4.20 |
328 | 329 | 3.311486 | TTTTGCAAAATGGGATCGTCC | 57.689 | 42.857 | 20.46 | 0.00 | 35.23 | 4.79 |
329 | 330 | 0.808125 | TTGCAAAATGGGATCGTCCG | 59.192 | 50.000 | 0.00 | 0.00 | 37.43 | 4.79 |
330 | 331 | 0.322098 | TGCAAAATGGGATCGTCCGT | 60.322 | 50.000 | 0.00 | 0.00 | 37.43 | 4.69 |
331 | 332 | 0.098728 | GCAAAATGGGATCGTCCGTG | 59.901 | 55.000 | 0.00 | 0.00 | 37.43 | 4.94 |
332 | 333 | 1.448985 | CAAAATGGGATCGTCCGTGT | 58.551 | 50.000 | 0.00 | 0.00 | 37.43 | 4.49 |
333 | 334 | 1.810151 | CAAAATGGGATCGTCCGTGTT | 59.190 | 47.619 | 0.00 | 0.00 | 37.43 | 3.32 |
334 | 335 | 1.448985 | AAATGGGATCGTCCGTGTTG | 58.551 | 50.000 | 0.00 | 0.00 | 37.43 | 3.33 |
335 | 336 | 0.392461 | AATGGGATCGTCCGTGTTGG | 60.392 | 55.000 | 0.00 | 0.00 | 37.43 | 3.77 |
336 | 337 | 2.125269 | GGGATCGTCCGTGTTGGG | 60.125 | 66.667 | 0.00 | 0.00 | 37.43 | 4.12 |
337 | 338 | 2.818274 | GGATCGTCCGTGTTGGGC | 60.818 | 66.667 | 0.00 | 0.00 | 39.78 | 5.36 |
338 | 339 | 2.264794 | GATCGTCCGTGTTGGGCT | 59.735 | 61.111 | 0.00 | 0.00 | 41.63 | 5.19 |
339 | 340 | 1.810030 | GATCGTCCGTGTTGGGCTC | 60.810 | 63.158 | 0.00 | 0.00 | 41.63 | 4.70 |
340 | 341 | 2.501223 | GATCGTCCGTGTTGGGCTCA | 62.501 | 60.000 | 0.00 | 0.00 | 41.63 | 4.26 |
341 | 342 | 2.507110 | ATCGTCCGTGTTGGGCTCAG | 62.507 | 60.000 | 0.00 | 0.00 | 41.63 | 3.35 |
342 | 343 | 3.050275 | GTCCGTGTTGGGCTCAGC | 61.050 | 66.667 | 0.00 | 0.00 | 40.15 | 4.26 |
343 | 344 | 3.241530 | TCCGTGTTGGGCTCAGCT | 61.242 | 61.111 | 0.92 | 0.00 | 38.76 | 4.24 |
344 | 345 | 1.911269 | TCCGTGTTGGGCTCAGCTA | 60.911 | 57.895 | 0.92 | 0.00 | 38.76 | 3.32 |
345 | 346 | 1.741770 | CCGTGTTGGGCTCAGCTAC | 60.742 | 63.158 | 0.92 | 0.00 | 0.00 | 3.58 |
346 | 347 | 2.094659 | CGTGTTGGGCTCAGCTACG | 61.095 | 63.158 | 0.92 | 6.50 | 0.00 | 3.51 |
347 | 348 | 1.741770 | GTGTTGGGCTCAGCTACGG | 60.742 | 63.158 | 0.92 | 0.00 | 0.00 | 4.02 |
348 | 349 | 2.125106 | GTTGGGCTCAGCTACGGG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
349 | 350 | 4.096003 | TTGGGCTCAGCTACGGGC | 62.096 | 66.667 | 0.00 | 0.00 | 42.19 | 6.13 |
353 | 354 | 4.874977 | GCTCAGCTACGGGCCGAC | 62.875 | 72.222 | 35.78 | 21.00 | 43.05 | 4.79 |
363 | 364 | 2.746277 | GGGCCGACTGACGCAAAT | 60.746 | 61.111 | 0.00 | 0.00 | 41.07 | 2.32 |
365 | 366 | 2.032634 | GGCCGACTGACGCAAATGA | 61.033 | 57.895 | 0.00 | 0.00 | 41.07 | 2.57 |
367 | 368 | 0.452784 | GCCGACTGACGCAAATGAAC | 60.453 | 55.000 | 0.00 | 0.00 | 41.07 | 3.18 |
368 | 369 | 1.148310 | CCGACTGACGCAAATGAACT | 58.852 | 50.000 | 0.00 | 0.00 | 41.07 | 3.01 |
374 | 375 | 3.242518 | CTGACGCAAATGAACTCTCGTA | 58.757 | 45.455 | 0.00 | 0.00 | 0.00 | 3.43 |
376 | 377 | 3.857665 | TGACGCAAATGAACTCTCGTATC | 59.142 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
379 | 380 | 2.033662 | GCAAATGAACTCTCGTATCCGC | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
385 | 386 | 0.393944 | ACTCTCGTATCCGCCTGACA | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
395 | 396 | 0.321564 | CCGCCTGACAGATCCAAACA | 60.322 | 55.000 | 3.32 | 0.00 | 0.00 | 2.83 |
396 | 397 | 1.522668 | CGCCTGACAGATCCAAACAA | 58.477 | 50.000 | 3.32 | 0.00 | 0.00 | 2.83 |
398 | 399 | 2.489329 | CGCCTGACAGATCCAAACAAAT | 59.511 | 45.455 | 3.32 | 0.00 | 0.00 | 2.32 |
403 | 404 | 6.928492 | GCCTGACAGATCCAAACAAATAAAAA | 59.072 | 34.615 | 3.32 | 0.00 | 0.00 | 1.94 |
417 | 418 | 7.722795 | ACAAATAAAAATCGGACAAAAAGGG | 57.277 | 32.000 | 0.00 | 0.00 | 0.00 | 3.95 |
418 | 419 | 7.276658 | ACAAATAAAAATCGGACAAAAAGGGT | 58.723 | 30.769 | 0.00 | 0.00 | 0.00 | 4.34 |
420 | 421 | 8.616942 | CAAATAAAAATCGGACAAAAAGGGTTT | 58.383 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
421 | 422 | 7.956420 | ATAAAAATCGGACAAAAAGGGTTTC | 57.044 | 32.000 | 0.00 | 0.00 | 0.00 | 2.78 |
422 | 423 | 4.330944 | AAATCGGACAAAAAGGGTTTCC | 57.669 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
434 | 435 | 0.389817 | GGGTTTCCTTTTGCATCGGC | 60.390 | 55.000 | 0.00 | 0.00 | 41.68 | 5.54 |
446 | 447 | 2.046314 | ATCGGCCGGTTGGAGTTG | 60.046 | 61.111 | 27.83 | 0.00 | 37.49 | 3.16 |
456 | 457 | 1.408822 | GGTTGGAGTTGGCCATAGAGG | 60.409 | 57.143 | 6.09 | 0.00 | 37.86 | 3.69 |
467 | 468 | 2.160822 | CCATAGAGGCATGGTCTTCG | 57.839 | 55.000 | 0.00 | 0.00 | 40.62 | 3.79 |
470 | 471 | 0.461548 | TAGAGGCATGGTCTTCGCTG | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
482 | 483 | 1.000717 | TCTTCGCTGACACGAACATGA | 60.001 | 47.619 | 0.00 | 3.86 | 46.39 | 3.07 |
483 | 484 | 1.125021 | CTTCGCTGACACGAACATGAC | 59.875 | 52.381 | 0.00 | 0.00 | 46.39 | 3.06 |
484 | 485 | 0.031449 | TCGCTGACACGAACATGACA | 59.969 | 50.000 | 0.00 | 0.00 | 39.54 | 3.58 |
485 | 486 | 0.858583 | CGCTGACACGAACATGACAA | 59.141 | 50.000 | 0.00 | 0.00 | 34.06 | 3.18 |
487 | 488 | 2.722706 | CGCTGACACGAACATGACAATG | 60.723 | 50.000 | 0.00 | 0.00 | 35.98 | 2.82 |
488 | 489 | 2.413239 | GCTGACACGAACATGACAATGG | 60.413 | 50.000 | 0.00 | 0.00 | 38.19 | 3.16 |
493 | 494 | 1.812571 | ACGAACATGACAATGGAAGGC | 59.187 | 47.619 | 0.00 | 0.00 | 38.19 | 4.35 |
498 | 499 | 2.435938 | GACAATGGAAGGCGGCGA | 60.436 | 61.111 | 12.98 | 0.00 | 0.00 | 5.54 |
499 | 500 | 2.033448 | ACAATGGAAGGCGGCGAA | 59.967 | 55.556 | 12.98 | 0.00 | 0.00 | 4.70 |
503 | 504 | 0.893727 | AATGGAAGGCGGCGAAAAGT | 60.894 | 50.000 | 12.98 | 0.00 | 0.00 | 2.66 |
511 | 512 | 1.599797 | CGGCGAAAAGTGGGGAAGT | 60.600 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
518 | 519 | 0.779997 | AAAGTGGGGAAGTGGCAGAT | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
567 | 571 | 5.888105 | ACTTGCAATCTATTCATCAACTGC | 58.112 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
570 | 574 | 4.096833 | TGCAATCTATTCATCAACTGCCAC | 59.903 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
669 | 676 | 0.947244 | GATCATGGTCGTTGGATGGC | 59.053 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
674 | 681 | 2.237751 | GGTCGTTGGATGGCGATCG | 61.238 | 63.158 | 11.69 | 11.69 | 39.38 | 3.69 |
678 | 685 | 1.081556 | CGTTGGATGGCGATCGAACA | 61.082 | 55.000 | 27.21 | 17.13 | 43.78 | 3.18 |
732 | 742 | 3.165498 | GCCCGATAAATAGGCGCG | 58.835 | 61.111 | 0.00 | 0.00 | 36.84 | 6.86 |
735 | 745 | 1.019278 | CCCGATAAATAGGCGCGCAT | 61.019 | 55.000 | 34.42 | 30.20 | 0.00 | 4.73 |
736 | 746 | 0.370273 | CCGATAAATAGGCGCGCATC | 59.630 | 55.000 | 34.42 | 23.33 | 0.00 | 3.91 |
753 | 763 | 5.220873 | CGCGCATCATACATATACTACCTCT | 60.221 | 44.000 | 8.75 | 0.00 | 0.00 | 3.69 |
820 | 836 | 7.739498 | TTTTATATTTTGATACGGAGGGAGC | 57.261 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
831 | 847 | 1.412710 | CGGAGGGAGCAGCTATGTTTA | 59.587 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
840 | 857 | 6.017523 | GGGAGCAGCTATGTTTAGAGAATTTC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 2.17 |
858 | 875 | 0.395586 | TCCAAATGGATTCCGCAGGG | 60.396 | 55.000 | 0.00 | 0.00 | 44.68 | 4.45 |
885 | 902 | 8.830201 | ACGAATTTTCAAATGGATTCATCAAA | 57.170 | 26.923 | 0.00 | 0.00 | 32.24 | 2.69 |
929 | 968 | 2.368655 | CCATTAGTGGGCAAAACAGC | 57.631 | 50.000 | 0.00 | 0.00 | 42.11 | 4.40 |
967 | 1006 | 0.250081 | GATCCGATCTGGTTGAGCCC | 60.250 | 60.000 | 0.75 | 0.00 | 39.52 | 5.19 |
1331 | 1414 | 2.833582 | CCGCGCCCTCTTCCTCTA | 60.834 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
1344 | 1430 | 4.124351 | CTCTACGACCGCGGCCAA | 62.124 | 66.667 | 28.58 | 7.56 | 43.17 | 4.52 |
2173 | 2336 | 0.044092 | TCAGCAAGGGGTATGGGAGA | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2274 | 2437 | 2.038164 | TGACTGCTTCAGACATGCTCTT | 59.962 | 45.455 | 0.29 | 0.00 | 32.09 | 2.85 |
2345 | 2519 | 6.431852 | TGCTGTAGCGTAACATATGGATAGTA | 59.568 | 38.462 | 7.80 | 0.00 | 45.83 | 1.82 |
2629 | 2826 | 8.477709 | GTTATGTCTGTAATAGTGTAATGCGAC | 58.522 | 37.037 | 0.00 | 0.00 | 0.00 | 5.19 |
2700 | 2897 | 4.492791 | TGATCACTGTGCAGTTCATTTG | 57.507 | 40.909 | 2.12 | 0.00 | 40.20 | 2.32 |
2785 | 3005 | 7.291411 | AGACAGTCAACAGAACATAGTTACT | 57.709 | 36.000 | 2.66 | 0.00 | 0.00 | 2.24 |
3197 | 3551 | 4.722361 | GTTGACCCCACAACTTTAACAA | 57.278 | 40.909 | 0.00 | 0.00 | 44.34 | 2.83 |
3319 | 3789 | 7.977789 | TGCAATAAGTTCTCATTGTCTGTTA | 57.022 | 32.000 | 0.00 | 0.00 | 35.12 | 2.41 |
3481 | 4438 | 3.581755 | GCATTTGTGTGCATCTCATTGT | 58.418 | 40.909 | 0.00 | 0.00 | 44.43 | 2.71 |
3585 | 4749 | 6.866010 | AAATGTTTTTCTTCCTTCAATGGC | 57.134 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
3717 | 4881 | 5.391312 | AAATGTTGAATACTGCAAGGGTC | 57.609 | 39.130 | 0.00 | 0.00 | 39.30 | 4.46 |
3786 | 4950 | 4.366586 | TGATTGCTCTAGCTGAAATCTCG | 58.633 | 43.478 | 13.74 | 0.00 | 42.66 | 4.04 |
4109 | 5379 | 3.896888 | TCACCTGCTTTTGAATCCACATT | 59.103 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
4791 | 6168 | 0.898326 | TCTACGGCAGCACCAAGAGA | 60.898 | 55.000 | 0.00 | 0.00 | 39.03 | 3.10 |
4957 | 6364 | 7.495279 | CAGCTAGATAGAAATTCTGAAACTGCT | 59.505 | 37.037 | 5.64 | 5.73 | 0.00 | 4.24 |
4985 | 6398 | 0.748005 | CATGGGACGCCCTAACAAGG | 60.748 | 60.000 | 14.76 | 0.00 | 45.70 | 3.61 |
5000 | 6413 | 2.980548 | ACAAGGTGTTACTACTCCCCA | 58.019 | 47.619 | 0.00 | 0.00 | 38.44 | 4.96 |
5074 | 6509 | 6.620877 | ATTTGATCTGGTCACTAGGTGTTA | 57.379 | 37.500 | 0.00 | 0.00 | 36.32 | 2.41 |
5082 | 6517 | 3.877508 | GGTCACTAGGTGTTATTGGCATC | 59.122 | 47.826 | 0.00 | 0.00 | 34.79 | 3.91 |
5139 | 6574 | 2.766313 | GCGGTGCAATACTCATCCATA | 58.234 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
5252 | 6687 | 9.938670 | CTCTAAACTATGTCTATATACATCCGC | 57.061 | 37.037 | 7.00 | 0.00 | 40.52 | 5.54 |
5306 | 6741 | 9.155785 | AGATTTATATTTAGAAACGGAGGGAGA | 57.844 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
5437 | 6879 | 4.862018 | CGTATTTGCGAAACCATTTTGGAT | 59.138 | 37.500 | 0.00 | 0.00 | 40.96 | 3.41 |
5440 | 6882 | 3.296322 | TGCGAAACCATTTTGGATGTC | 57.704 | 42.857 | 0.00 | 0.00 | 40.96 | 3.06 |
5443 | 6885 | 3.233578 | CGAAACCATTTTGGATGTCACG | 58.766 | 45.455 | 0.00 | 0.00 | 40.96 | 4.35 |
5444 | 6886 | 2.723124 | AACCATTTTGGATGTCACGC | 57.277 | 45.000 | 0.00 | 0.00 | 40.96 | 5.34 |
5446 | 6888 | 0.521291 | CCATTTTGGATGTCACGCGT | 59.479 | 50.000 | 5.58 | 5.58 | 40.96 | 6.01 |
5447 | 6889 | 1.735018 | CCATTTTGGATGTCACGCGTA | 59.265 | 47.619 | 13.44 | 0.00 | 40.96 | 4.42 |
5448 | 6890 | 2.160615 | CCATTTTGGATGTCACGCGTAA | 59.839 | 45.455 | 13.44 | 0.00 | 40.96 | 3.18 |
5449 | 6891 | 3.365465 | CCATTTTGGATGTCACGCGTAAA | 60.365 | 43.478 | 13.44 | 6.74 | 40.96 | 2.01 |
5450 | 6892 | 3.965292 | TTTTGGATGTCACGCGTAAAA | 57.035 | 38.095 | 13.44 | 10.72 | 0.00 | 1.52 |
5457 | 6899 | 4.491924 | GGATGTCACGCGTAAAATGTAGTG | 60.492 | 45.833 | 13.44 | 0.00 | 0.00 | 2.74 |
5567 | 7146 | 6.698766 | AGTTTTTGCAAGTCAGTGATCATTTC | 59.301 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
5593 | 7196 | 8.067784 | CAGAAACATTTATTGTCTACGTGTTGT | 58.932 | 33.333 | 0.00 | 0.00 | 37.68 | 3.32 |
5649 | 7323 | 8.795786 | TCTTTCCGAATTGAAGTTAAACAATG | 57.204 | 30.769 | 0.00 | 0.00 | 36.92 | 2.82 |
5706 | 7381 | 9.874215 | CTAGATGCATTTACAGATTACACATTG | 57.126 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
5892 | 7578 | 0.687354 | TGAGAAGTCTGGACAAGGCC | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
9 | 10 | 4.504596 | TCCATGCCCCACCATCGC | 62.505 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
12 | 13 | 3.338250 | ACGTCCATGCCCCACCAT | 61.338 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
13 | 14 | 4.343323 | CACGTCCATGCCCCACCA | 62.343 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
15 | 16 | 4.028490 | TCCACGTCCATGCCCCAC | 62.028 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
16 | 17 | 4.028490 | GTCCACGTCCATGCCCCA | 62.028 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
44 | 45 | 3.499737 | GAACTCCGGCGTGCATGG | 61.500 | 66.667 | 8.27 | 0.00 | 0.00 | 3.66 |
45 | 46 | 3.853330 | CGAACTCCGGCGTGCATG | 61.853 | 66.667 | 6.01 | 0.09 | 33.91 | 4.06 |
46 | 47 | 4.373116 | ACGAACTCCGGCGTGCAT | 62.373 | 61.111 | 6.01 | 0.00 | 43.93 | 3.96 |
144 | 145 | 4.329545 | GAACGGAGGTGGCTGCCA | 62.330 | 66.667 | 19.30 | 19.30 | 0.00 | 4.92 |
146 | 147 | 4.681978 | ACGAACGGAGGTGGCTGC | 62.682 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
147 | 148 | 2.432628 | GACGAACGGAGGTGGCTG | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
148 | 149 | 4.052229 | CGACGAACGGAGGTGGCT | 62.052 | 66.667 | 0.00 | 0.00 | 38.46 | 4.75 |
149 | 150 | 4.047059 | TCGACGAACGGAGGTGGC | 62.047 | 66.667 | 0.00 | 0.00 | 42.82 | 5.01 |
150 | 151 | 2.126580 | GTCGACGAACGGAGGTGG | 60.127 | 66.667 | 0.00 | 0.00 | 42.82 | 4.61 |
151 | 152 | 2.126580 | GGTCGACGAACGGAGGTG | 60.127 | 66.667 | 9.92 | 0.00 | 42.82 | 4.00 |
152 | 153 | 2.282040 | AGGTCGACGAACGGAGGT | 60.282 | 61.111 | 9.92 | 0.00 | 42.82 | 3.85 |
153 | 154 | 2.330372 | TGAGGTCGACGAACGGAGG | 61.330 | 63.158 | 9.92 | 0.00 | 42.82 | 4.30 |
154 | 155 | 1.154263 | GTGAGGTCGACGAACGGAG | 60.154 | 63.158 | 9.92 | 0.00 | 42.82 | 4.63 |
155 | 156 | 2.620112 | GGTGAGGTCGACGAACGGA | 61.620 | 63.158 | 9.92 | 0.00 | 42.82 | 4.69 |
156 | 157 | 2.126580 | GGTGAGGTCGACGAACGG | 60.127 | 66.667 | 9.92 | 0.00 | 42.82 | 4.44 |
157 | 158 | 1.728426 | GTGGTGAGGTCGACGAACG | 60.728 | 63.158 | 9.92 | 0.00 | 44.09 | 3.95 |
158 | 159 | 1.728426 | CGTGGTGAGGTCGACGAAC | 60.728 | 63.158 | 9.92 | 4.26 | 40.81 | 3.95 |
159 | 160 | 2.640989 | CGTGGTGAGGTCGACGAA | 59.359 | 61.111 | 9.92 | 0.00 | 40.81 | 3.85 |
160 | 161 | 3.359523 | CCGTGGTGAGGTCGACGA | 61.360 | 66.667 | 9.92 | 0.00 | 40.81 | 4.20 |
161 | 162 | 2.697761 | ATCCGTGGTGAGGTCGACG | 61.698 | 63.158 | 9.92 | 0.00 | 38.77 | 5.12 |
162 | 163 | 1.153823 | CATCCGTGGTGAGGTCGAC | 60.154 | 63.158 | 7.13 | 7.13 | 0.00 | 4.20 |
163 | 164 | 2.348104 | CCATCCGTGGTGAGGTCGA | 61.348 | 63.158 | 0.00 | 0.00 | 40.83 | 4.20 |
164 | 165 | 2.184322 | CCATCCGTGGTGAGGTCG | 59.816 | 66.667 | 0.00 | 0.00 | 40.83 | 4.79 |
173 | 174 | 4.794439 | TCGTCGCTGCCATCCGTG | 62.794 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
174 | 175 | 3.838271 | ATCGTCGCTGCCATCCGT | 61.838 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
175 | 176 | 3.333189 | CATCGTCGCTGCCATCCG | 61.333 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
176 | 177 | 2.202932 | ACATCGTCGCTGCCATCC | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
177 | 178 | 3.313750 | GACATCGTCGCTGCCATC | 58.686 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
183 | 184 | 7.443249 | TCTAGTACTAGTCGACATCGTCGCT | 62.443 | 48.000 | 25.58 | 13.30 | 42.05 | 4.93 |
184 | 185 | 5.312452 | TCTAGTACTAGTCGACATCGTCGC | 61.312 | 50.000 | 25.58 | 7.15 | 42.05 | 5.19 |
185 | 186 | 4.286101 | TCTAGTACTAGTCGACATCGTCG | 58.714 | 47.826 | 25.58 | 10.16 | 42.78 | 5.12 |
186 | 187 | 6.151691 | AGATCTAGTACTAGTCGACATCGTC | 58.848 | 44.000 | 25.58 | 12.47 | 34.98 | 4.20 |
187 | 188 | 6.088016 | AGATCTAGTACTAGTCGACATCGT | 57.912 | 41.667 | 25.58 | 13.30 | 34.98 | 3.73 |
188 | 189 | 6.748658 | CCTAGATCTAGTACTAGTCGACATCG | 59.251 | 46.154 | 25.58 | 7.75 | 35.65 | 3.84 |
189 | 190 | 7.605449 | ACCTAGATCTAGTACTAGTCGACATC | 58.395 | 42.308 | 25.58 | 20.14 | 35.65 | 3.06 |
190 | 191 | 7.543359 | ACCTAGATCTAGTACTAGTCGACAT | 57.457 | 40.000 | 25.58 | 13.79 | 35.65 | 3.06 |
191 | 192 | 6.975196 | ACCTAGATCTAGTACTAGTCGACA | 57.025 | 41.667 | 25.58 | 9.80 | 35.65 | 4.35 |
192 | 193 | 8.661352 | AAAACCTAGATCTAGTACTAGTCGAC | 57.339 | 38.462 | 25.58 | 7.70 | 35.65 | 4.20 |
193 | 194 | 9.979578 | CTAAAACCTAGATCTAGTACTAGTCGA | 57.020 | 37.037 | 25.58 | 17.53 | 35.65 | 4.20 |
194 | 195 | 9.762933 | ACTAAAACCTAGATCTAGTACTAGTCG | 57.237 | 37.037 | 25.58 | 11.66 | 35.65 | 4.18 |
253 | 254 | 9.524106 | CACGTCCACTATCATACATTAAACTTA | 57.476 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
254 | 255 | 8.255206 | TCACGTCCACTATCATACATTAAACTT | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
255 | 256 | 7.778083 | TCACGTCCACTATCATACATTAAACT | 58.222 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
256 | 257 | 7.997107 | TCACGTCCACTATCATACATTAAAC | 57.003 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
257 | 258 | 8.255206 | AGTTCACGTCCACTATCATACATTAAA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
258 | 259 | 7.778083 | AGTTCACGTCCACTATCATACATTAA | 58.222 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
259 | 260 | 7.342769 | AGTTCACGTCCACTATCATACATTA | 57.657 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
260 | 261 | 6.222038 | AGTTCACGTCCACTATCATACATT | 57.778 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
261 | 262 | 5.854010 | AGTTCACGTCCACTATCATACAT | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
262 | 263 | 5.654603 | AAGTTCACGTCCACTATCATACA | 57.345 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
263 | 264 | 6.183360 | CCAAAAGTTCACGTCCACTATCATAC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
264 | 265 | 5.872617 | CCAAAAGTTCACGTCCACTATCATA | 59.127 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
265 | 266 | 4.695455 | CCAAAAGTTCACGTCCACTATCAT | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
266 | 267 | 4.062293 | CCAAAAGTTCACGTCCACTATCA | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
267 | 268 | 4.062991 | ACCAAAAGTTCACGTCCACTATC | 58.937 | 43.478 | 0.00 | 0.00 | 0.00 | 2.08 |
268 | 269 | 4.081322 | ACCAAAAGTTCACGTCCACTAT | 57.919 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
269 | 270 | 3.547054 | ACCAAAAGTTCACGTCCACTA | 57.453 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
270 | 271 | 2.413310 | ACCAAAAGTTCACGTCCACT | 57.587 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
271 | 272 | 3.608474 | GCATACCAAAAGTTCACGTCCAC | 60.608 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
272 | 273 | 2.550606 | GCATACCAAAAGTTCACGTCCA | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
273 | 274 | 2.550606 | TGCATACCAAAAGTTCACGTCC | 59.449 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
274 | 275 | 3.889196 | TGCATACCAAAAGTTCACGTC | 57.111 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
275 | 276 | 3.057596 | CCATGCATACCAAAAGTTCACGT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
276 | 277 | 3.057596 | ACCATGCATACCAAAAGTTCACG | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
277 | 278 | 4.519540 | ACCATGCATACCAAAAGTTCAC | 57.480 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
278 | 279 | 5.543507 | AAACCATGCATACCAAAAGTTCA | 57.456 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
279 | 280 | 8.546597 | AATTAAACCATGCATACCAAAAGTTC | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
280 | 281 | 8.782144 | CAAATTAAACCATGCATACCAAAAGTT | 58.218 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
281 | 282 | 8.153550 | TCAAATTAAACCATGCATACCAAAAGT | 58.846 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
282 | 283 | 8.545229 | TCAAATTAAACCATGCATACCAAAAG | 57.455 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
283 | 284 | 9.512588 | AATCAAATTAAACCATGCATACCAAAA | 57.487 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
284 | 285 | 9.512588 | AAATCAAATTAAACCATGCATACCAAA | 57.487 | 25.926 | 0.00 | 0.00 | 0.00 | 3.28 |
285 | 286 | 9.512588 | AAAATCAAATTAAACCATGCATACCAA | 57.487 | 25.926 | 0.00 | 0.00 | 0.00 | 3.67 |
286 | 287 | 8.944029 | CAAAATCAAATTAAACCATGCATACCA | 58.056 | 29.630 | 0.00 | 0.00 | 0.00 | 3.25 |
287 | 288 | 7.909641 | GCAAAATCAAATTAAACCATGCATACC | 59.090 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
288 | 289 | 8.449397 | TGCAAAATCAAATTAAACCATGCATAC | 58.551 | 29.630 | 0.00 | 0.00 | 35.39 | 2.39 |
289 | 290 | 8.557592 | TGCAAAATCAAATTAAACCATGCATA | 57.442 | 26.923 | 0.00 | 0.00 | 35.39 | 3.14 |
290 | 291 | 7.450124 | TGCAAAATCAAATTAAACCATGCAT | 57.550 | 28.000 | 0.00 | 0.00 | 35.39 | 3.96 |
291 | 292 | 6.872628 | TGCAAAATCAAATTAAACCATGCA | 57.127 | 29.167 | 0.00 | 0.00 | 37.70 | 3.96 |
292 | 293 | 8.571461 | TTTTGCAAAATCAAATTAAACCATGC | 57.429 | 26.923 | 20.46 | 0.00 | 36.04 | 4.06 |
294 | 295 | 9.694137 | CCATTTTGCAAAATCAAATTAAACCAT | 57.306 | 25.926 | 29.92 | 6.74 | 36.52 | 3.55 |
295 | 296 | 8.139989 | CCCATTTTGCAAAATCAAATTAAACCA | 58.860 | 29.630 | 29.92 | 3.78 | 36.52 | 3.67 |
296 | 297 | 8.355913 | TCCCATTTTGCAAAATCAAATTAAACC | 58.644 | 29.630 | 29.92 | 0.00 | 36.52 | 3.27 |
297 | 298 | 9.911138 | ATCCCATTTTGCAAAATCAAATTAAAC | 57.089 | 25.926 | 29.92 | 0.00 | 36.52 | 2.01 |
299 | 300 | 8.449397 | CGATCCCATTTTGCAAAATCAAATTAA | 58.551 | 29.630 | 29.92 | 14.18 | 36.52 | 1.40 |
300 | 301 | 7.605691 | ACGATCCCATTTTGCAAAATCAAATTA | 59.394 | 29.630 | 29.92 | 15.07 | 36.52 | 1.40 |
301 | 302 | 6.430616 | ACGATCCCATTTTGCAAAATCAAATT | 59.569 | 30.769 | 29.92 | 16.14 | 36.52 | 1.82 |
302 | 303 | 5.939296 | ACGATCCCATTTTGCAAAATCAAAT | 59.061 | 32.000 | 29.92 | 22.29 | 36.52 | 2.32 |
303 | 304 | 5.303971 | ACGATCCCATTTTGCAAAATCAAA | 58.696 | 33.333 | 29.92 | 19.24 | 36.52 | 2.69 |
304 | 305 | 4.892433 | ACGATCCCATTTTGCAAAATCAA | 58.108 | 34.783 | 29.92 | 19.54 | 36.52 | 2.57 |
305 | 306 | 4.493547 | GACGATCCCATTTTGCAAAATCA | 58.506 | 39.130 | 29.92 | 18.76 | 36.52 | 2.57 |
306 | 307 | 3.865164 | GGACGATCCCATTTTGCAAAATC | 59.135 | 43.478 | 29.92 | 19.89 | 36.52 | 2.17 |
307 | 308 | 3.675775 | CGGACGATCCCATTTTGCAAAAT | 60.676 | 43.478 | 27.73 | 27.73 | 39.07 | 1.82 |
308 | 309 | 2.352225 | CGGACGATCCCATTTTGCAAAA | 60.352 | 45.455 | 25.76 | 25.76 | 31.13 | 2.44 |
309 | 310 | 1.201181 | CGGACGATCCCATTTTGCAAA | 59.799 | 47.619 | 8.05 | 8.05 | 31.13 | 3.68 |
310 | 311 | 0.808125 | CGGACGATCCCATTTTGCAA | 59.192 | 50.000 | 0.00 | 0.00 | 31.13 | 4.08 |
311 | 312 | 0.322098 | ACGGACGATCCCATTTTGCA | 60.322 | 50.000 | 0.00 | 0.00 | 31.13 | 4.08 |
312 | 313 | 0.098728 | CACGGACGATCCCATTTTGC | 59.901 | 55.000 | 0.00 | 0.00 | 31.13 | 3.68 |
313 | 314 | 1.448985 | ACACGGACGATCCCATTTTG | 58.551 | 50.000 | 0.00 | 0.00 | 31.13 | 2.44 |
314 | 315 | 1.810151 | CAACACGGACGATCCCATTTT | 59.190 | 47.619 | 0.00 | 0.00 | 31.13 | 1.82 |
315 | 316 | 1.448985 | CAACACGGACGATCCCATTT | 58.551 | 50.000 | 0.00 | 0.00 | 31.13 | 2.32 |
316 | 317 | 0.392461 | CCAACACGGACGATCCCATT | 60.392 | 55.000 | 0.00 | 0.00 | 36.56 | 3.16 |
317 | 318 | 1.220749 | CCAACACGGACGATCCCAT | 59.779 | 57.895 | 0.00 | 0.00 | 36.56 | 4.00 |
318 | 319 | 2.660206 | CCAACACGGACGATCCCA | 59.340 | 61.111 | 0.00 | 0.00 | 36.56 | 4.37 |
319 | 320 | 2.125269 | CCCAACACGGACGATCCC | 60.125 | 66.667 | 0.00 | 0.00 | 36.56 | 3.85 |
320 | 321 | 2.818274 | GCCCAACACGGACGATCC | 60.818 | 66.667 | 0.00 | 0.00 | 36.56 | 3.36 |
321 | 322 | 1.810030 | GAGCCCAACACGGACGATC | 60.810 | 63.158 | 0.00 | 0.00 | 36.56 | 3.69 |
322 | 323 | 2.264794 | GAGCCCAACACGGACGAT | 59.735 | 61.111 | 0.00 | 0.00 | 36.56 | 3.73 |
323 | 324 | 3.220999 | CTGAGCCCAACACGGACGA | 62.221 | 63.158 | 0.00 | 0.00 | 36.56 | 4.20 |
324 | 325 | 2.738521 | CTGAGCCCAACACGGACG | 60.739 | 66.667 | 0.00 | 0.00 | 36.56 | 4.79 |
325 | 326 | 2.167398 | TAGCTGAGCCCAACACGGAC | 62.167 | 60.000 | 0.00 | 0.00 | 36.56 | 4.79 |
326 | 327 | 1.911269 | TAGCTGAGCCCAACACGGA | 60.911 | 57.895 | 0.00 | 0.00 | 36.56 | 4.69 |
327 | 328 | 1.741770 | GTAGCTGAGCCCAACACGG | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
328 | 329 | 2.094659 | CGTAGCTGAGCCCAACACG | 61.095 | 63.158 | 0.00 | 0.00 | 0.00 | 4.49 |
329 | 330 | 1.741770 | CCGTAGCTGAGCCCAACAC | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 3.32 |
330 | 331 | 2.662596 | CCGTAGCTGAGCCCAACA | 59.337 | 61.111 | 0.00 | 0.00 | 0.00 | 3.33 |
331 | 332 | 2.125106 | CCCGTAGCTGAGCCCAAC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
332 | 333 | 4.096003 | GCCCGTAGCTGAGCCCAA | 62.096 | 66.667 | 0.00 | 0.00 | 38.99 | 4.12 |
340 | 341 | 3.450115 | GTCAGTCGGCCCGTAGCT | 61.450 | 66.667 | 1.63 | 0.00 | 43.05 | 3.32 |
341 | 342 | 4.849329 | CGTCAGTCGGCCCGTAGC | 62.849 | 72.222 | 1.63 | 0.00 | 42.60 | 3.58 |
342 | 343 | 4.849329 | GCGTCAGTCGGCCCGTAG | 62.849 | 72.222 | 1.63 | 0.00 | 40.26 | 3.51 |
346 | 347 | 2.746277 | ATTTGCGTCAGTCGGCCC | 60.746 | 61.111 | 0.00 | 0.00 | 40.26 | 5.80 |
347 | 348 | 1.573829 | TTCATTTGCGTCAGTCGGCC | 61.574 | 55.000 | 0.00 | 0.00 | 40.26 | 6.13 |
348 | 349 | 0.452784 | GTTCATTTGCGTCAGTCGGC | 60.453 | 55.000 | 0.00 | 0.00 | 40.26 | 5.54 |
349 | 350 | 1.126846 | GAGTTCATTTGCGTCAGTCGG | 59.873 | 52.381 | 0.00 | 0.00 | 40.26 | 4.79 |
350 | 351 | 2.061773 | AGAGTTCATTTGCGTCAGTCG | 58.938 | 47.619 | 0.00 | 0.00 | 43.12 | 4.18 |
351 | 352 | 2.091277 | CGAGAGTTCATTTGCGTCAGTC | 59.909 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
352 | 353 | 2.061773 | CGAGAGTTCATTTGCGTCAGT | 58.938 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
353 | 354 | 2.061773 | ACGAGAGTTCATTTGCGTCAG | 58.938 | 47.619 | 0.00 | 0.00 | 46.40 | 3.51 |
374 | 375 | 0.911769 | TTTGGATCTGTCAGGCGGAT | 59.088 | 50.000 | 0.00 | 0.00 | 45.41 | 4.18 |
376 | 377 | 0.321564 | TGTTTGGATCTGTCAGGCGG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
379 | 380 | 9.143631 | GATTTTTATTTGTTTGGATCTGTCAGG | 57.856 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
385 | 386 | 7.891561 | TGTCCGATTTTTATTTGTTTGGATCT | 58.108 | 30.769 | 0.00 | 0.00 | 0.00 | 2.75 |
395 | 396 | 8.740123 | AAACCCTTTTTGTCCGATTTTTATTT | 57.260 | 26.923 | 0.00 | 0.00 | 0.00 | 1.40 |
396 | 397 | 7.442969 | GGAAACCCTTTTTGTCCGATTTTTATT | 59.557 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
398 | 399 | 6.098552 | AGGAAACCCTTTTTGTCCGATTTTTA | 59.901 | 34.615 | 0.00 | 0.00 | 33.38 | 1.52 |
403 | 404 | 3.238788 | AGGAAACCCTTTTTGTCCGAT | 57.761 | 42.857 | 0.00 | 0.00 | 33.38 | 4.18 |
417 | 418 | 0.732538 | CGGCCGATGCAAAAGGAAAC | 60.733 | 55.000 | 24.07 | 0.00 | 40.13 | 2.78 |
418 | 419 | 1.583986 | CGGCCGATGCAAAAGGAAA | 59.416 | 52.632 | 24.07 | 0.00 | 40.13 | 3.13 |
420 | 421 | 2.749839 | CCGGCCGATGCAAAAGGA | 60.750 | 61.111 | 30.73 | 0.00 | 40.13 | 3.36 |
421 | 422 | 2.635443 | AACCGGCCGATGCAAAAGG | 61.635 | 57.895 | 30.73 | 8.96 | 40.13 | 3.11 |
422 | 423 | 1.444212 | CAACCGGCCGATGCAAAAG | 60.444 | 57.895 | 30.73 | 9.82 | 40.13 | 2.27 |
429 | 430 | 2.046314 | CAACTCCAACCGGCCGAT | 60.046 | 61.111 | 30.73 | 6.36 | 0.00 | 4.18 |
434 | 435 | 0.748005 | CTATGGCCAACTCCAACCGG | 60.748 | 60.000 | 10.96 | 0.00 | 39.96 | 5.28 |
456 | 457 | 1.790387 | GTGTCAGCGAAGACCATGC | 59.210 | 57.895 | 5.40 | 0.00 | 37.73 | 4.06 |
466 | 467 | 0.858583 | TTGTCATGTTCGTGTCAGCG | 59.141 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
467 | 468 | 2.413239 | CCATTGTCATGTTCGTGTCAGC | 60.413 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
470 | 471 | 3.120199 | CCTTCCATTGTCATGTTCGTGTC | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
482 | 483 | 1.175983 | TTTTCGCCGCCTTCCATTGT | 61.176 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
483 | 484 | 0.456653 | CTTTTCGCCGCCTTCCATTG | 60.457 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
484 | 485 | 0.893727 | ACTTTTCGCCGCCTTCCATT | 60.894 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
485 | 486 | 1.303317 | ACTTTTCGCCGCCTTCCAT | 60.303 | 52.632 | 0.00 | 0.00 | 0.00 | 3.41 |
487 | 488 | 2.561373 | CACTTTTCGCCGCCTTCC | 59.439 | 61.111 | 0.00 | 0.00 | 0.00 | 3.46 |
488 | 489 | 2.561373 | CCACTTTTCGCCGCCTTC | 59.439 | 61.111 | 0.00 | 0.00 | 0.00 | 3.46 |
493 | 494 | 1.599797 | ACTTCCCCACTTTTCGCCG | 60.600 | 57.895 | 0.00 | 0.00 | 0.00 | 6.46 |
498 | 499 | 0.555769 | TCTGCCACTTCCCCACTTTT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
499 | 500 | 0.779997 | ATCTGCCACTTCCCCACTTT | 59.220 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
503 | 504 | 1.852157 | ACCATCTGCCACTTCCCCA | 60.852 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
511 | 512 | 4.478531 | TGGCTAGACCATCTGCCA | 57.521 | 55.556 | 14.22 | 14.22 | 46.36 | 4.92 |
548 | 552 | 4.604976 | GTGGCAGTTGATGAATAGATTGC | 58.395 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
567 | 571 | 4.152402 | CCTCTGTTCTTTGTACAATCGTGG | 59.848 | 45.833 | 9.56 | 1.09 | 0.00 | 4.94 |
570 | 574 | 4.627467 | CCTCCTCTGTTCTTTGTACAATCG | 59.373 | 45.833 | 9.56 | 4.16 | 0.00 | 3.34 |
629 | 636 | 4.732784 | TCACACAGCAACTGTTTCTTTTC | 58.267 | 39.130 | 0.00 | 0.00 | 42.59 | 2.29 |
633 | 640 | 3.544684 | TGATCACACAGCAACTGTTTCT | 58.455 | 40.909 | 0.00 | 0.00 | 42.59 | 2.52 |
634 | 641 | 3.969117 | TGATCACACAGCAACTGTTTC | 57.031 | 42.857 | 0.00 | 0.00 | 42.59 | 2.78 |
635 | 642 | 3.005050 | CCATGATCACACAGCAACTGTTT | 59.995 | 43.478 | 0.00 | 0.00 | 42.59 | 2.83 |
636 | 643 | 2.555325 | CCATGATCACACAGCAACTGTT | 59.445 | 45.455 | 0.00 | 0.00 | 42.59 | 3.16 |
637 | 644 | 2.156917 | CCATGATCACACAGCAACTGT | 58.843 | 47.619 | 0.00 | 0.00 | 46.51 | 3.55 |
641 | 648 | 1.270785 | ACGACCATGATCACACAGCAA | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
642 | 649 | 0.321346 | ACGACCATGATCACACAGCA | 59.679 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
709 | 719 | 2.230508 | CGCCTATTTATCGGGCACTAGA | 59.769 | 50.000 | 0.00 | 0.00 | 45.50 | 2.43 |
718 | 728 | 1.067693 | TGATGCGCGCCTATTTATCG | 58.932 | 50.000 | 30.77 | 0.00 | 0.00 | 2.92 |
731 | 741 | 7.089770 | ACAGAGGTAGTATATGTATGATGCG | 57.910 | 40.000 | 0.00 | 0.00 | 0.00 | 4.73 |
791 | 801 | 9.893305 | CCCTCCGTATCAAAATATAAAAACATC | 57.107 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
792 | 802 | 9.635404 | TCCCTCCGTATCAAAATATAAAAACAT | 57.365 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
793 | 803 | 9.116067 | CTCCCTCCGTATCAAAATATAAAAACA | 57.884 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
794 | 804 | 8.074370 | GCTCCCTCCGTATCAAAATATAAAAAC | 58.926 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
795 | 805 | 7.776030 | TGCTCCCTCCGTATCAAAATATAAAAA | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
796 | 806 | 7.284074 | TGCTCCCTCCGTATCAAAATATAAAA | 58.716 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
797 | 807 | 6.833041 | TGCTCCCTCCGTATCAAAATATAAA | 58.167 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
809 | 825 | 0.106167 | ACATAGCTGCTCCCTCCGTA | 60.106 | 55.000 | 4.91 | 0.00 | 0.00 | 4.02 |
815 | 831 | 4.408182 | TTCTCTAAACATAGCTGCTCCC | 57.592 | 45.455 | 4.91 | 0.00 | 0.00 | 4.30 |
820 | 836 | 9.512435 | CATTTGGAAATTCTCTAAACATAGCTG | 57.488 | 33.333 | 0.00 | 0.00 | 37.34 | 4.24 |
840 | 857 | 0.395586 | TCCCTGCGGAATCCATTTGG | 60.396 | 55.000 | 0.00 | 0.00 | 34.19 | 3.28 |
849 | 866 | 1.538075 | GAAAATTCGTTCCCTGCGGAA | 59.462 | 47.619 | 0.00 | 0.00 | 46.38 | 4.30 |
858 | 875 | 8.464770 | TGATGAATCCATTTGAAAATTCGTTC | 57.535 | 30.769 | 0.00 | 0.00 | 32.09 | 3.95 |
910 | 949 | 1.066929 | GGCTGTTTTGCCCACTAATGG | 60.067 | 52.381 | 0.00 | 0.00 | 46.82 | 3.16 |
911 | 950 | 2.368655 | GGCTGTTTTGCCCACTAATG | 57.631 | 50.000 | 0.00 | 0.00 | 46.82 | 1.90 |
929 | 968 | 1.024579 | CGGAACTGGGAATGGTTCGG | 61.025 | 60.000 | 0.00 | 0.00 | 41.67 | 4.30 |
967 | 1006 | 1.976474 | CGGGTGGGGAATGTGGTTG | 60.976 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
1025 | 1105 | 3.822192 | CGACATCGTCCGGGAGCA | 61.822 | 66.667 | 0.00 | 0.00 | 34.11 | 4.26 |
1038 | 1118 | 1.065345 | AGGAGGATCTCTTCGACGACA | 60.065 | 52.381 | 0.00 | 0.00 | 33.73 | 4.35 |
1331 | 1414 | 4.612412 | TTTCTTGGCCGCGGTCGT | 62.612 | 61.111 | 26.87 | 0.00 | 0.00 | 4.34 |
1694 | 1805 | 1.468520 | CACTGCCCAAATTGTACTCCG | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
2013 | 2172 | 2.194597 | TGGCACACCCTTTTCGCT | 59.805 | 55.556 | 0.00 | 0.00 | 33.59 | 4.93 |
2129 | 2291 | 0.457851 | CCTCCTCAGTAGGTTCAGCG | 59.542 | 60.000 | 0.00 | 0.00 | 44.09 | 5.18 |
2173 | 2336 | 4.009675 | TGCGCCAATTCTAGTGATTTCTT | 58.990 | 39.130 | 4.18 | 0.00 | 0.00 | 2.52 |
2274 | 2437 | 6.071984 | GGAGTAGAATCCTAACCTGATCTCA | 58.928 | 44.000 | 0.00 | 0.00 | 36.35 | 3.27 |
2605 | 2802 | 6.854381 | CGTCGCATTACACTATTACAGACATA | 59.146 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
2611 | 2808 | 5.488645 | TCTCGTCGCATTACACTATTACA | 57.511 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
2612 | 2809 | 6.988109 | ATTCTCGTCGCATTACACTATTAC | 57.012 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2613 | 2810 | 9.518906 | TTTAATTCTCGTCGCATTACACTATTA | 57.481 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
2614 | 2811 | 7.997107 | TTAATTCTCGTCGCATTACACTATT | 57.003 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2615 | 2812 | 7.997107 | TTTAATTCTCGTCGCATTACACTAT | 57.003 | 32.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2616 | 2813 | 7.703197 | TGATTTAATTCTCGTCGCATTACACTA | 59.297 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2617 | 2814 | 6.533723 | TGATTTAATTCTCGTCGCATTACACT | 59.466 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
2618 | 2815 | 6.701937 | TGATTTAATTCTCGTCGCATTACAC | 58.298 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2629 | 2826 | 6.524586 | GCACTTGGACTTTGATTTAATTCTCG | 59.475 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
2700 | 2897 | 2.672098 | TCTGAGGAAGAGGAGCCATAC | 58.328 | 52.381 | 0.00 | 0.00 | 0.00 | 2.39 |
2785 | 3005 | 7.118496 | ACAAAACCATTTTATGACACAAGGA | 57.882 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3273 | 3627 | 5.581085 | GCAACCAGTAGTGTTATCAACTAGG | 59.419 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3481 | 4438 | 2.430332 | CAGCCCAAGAGGAAACAAACAA | 59.570 | 45.455 | 0.00 | 0.00 | 38.24 | 2.83 |
3576 | 4740 | 0.806868 | ATCAGCACGTGCCATTGAAG | 59.193 | 50.000 | 35.51 | 16.84 | 43.38 | 3.02 |
3585 | 4749 | 3.618594 | AGCAACAACTATATCAGCACGTG | 59.381 | 43.478 | 12.28 | 12.28 | 0.00 | 4.49 |
3626 | 4790 | 0.400213 | ATCCGTCTGACCTTTGCCAA | 59.600 | 50.000 | 1.55 | 0.00 | 0.00 | 4.52 |
3717 | 4881 | 3.196469 | TCTCTGGACTCTTGGCAACTATG | 59.804 | 47.826 | 0.00 | 0.00 | 37.61 | 2.23 |
3786 | 4950 | 5.275067 | AGCTGAGATTACCTCTTGTCATC | 57.725 | 43.478 | 0.00 | 0.00 | 42.44 | 2.92 |
3925 | 5090 | 3.515104 | CAGGCCTAACCAAATGTTCCAAT | 59.485 | 43.478 | 3.98 | 0.00 | 43.14 | 3.16 |
4109 | 5379 | 7.453752 | ACAGTCCTACTCCAAATCTACACTAAA | 59.546 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
4791 | 6168 | 3.439129 | GGTTACGCTACTTCCAATGCTTT | 59.561 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4957 | 6364 | 1.003118 | GGGCGTCCCATGCATATCTTA | 59.997 | 52.381 | 0.00 | 0.00 | 44.65 | 2.10 |
4985 | 6398 | 5.099042 | ACATGAATGGGGAGTAGTAACAC | 57.901 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
5000 | 6413 | 3.346315 | TCACCATTGAGCGAACATGAAT | 58.654 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
5074 | 6509 | 5.829391 | TCAGTTATTATGTGCTGATGCCAAT | 59.171 | 36.000 | 0.00 | 0.00 | 38.71 | 3.16 |
5082 | 6517 | 7.389607 | TGATGATCCATCAGTTATTATGTGCTG | 59.610 | 37.037 | 5.61 | 0.00 | 44.60 | 4.41 |
5121 | 6556 | 6.543831 | AGAAAACTATGGATGAGTATTGCACC | 59.456 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
5126 | 6561 | 8.652290 | GGGAGTAGAAAACTATGGATGAGTATT | 58.348 | 37.037 | 0.00 | 0.00 | 39.07 | 1.89 |
5139 | 6574 | 2.566279 | GGAACGGAGGGAGTAGAAAACT | 59.434 | 50.000 | 0.00 | 0.00 | 42.80 | 2.66 |
5252 | 6687 | 9.645059 | TTTAGAGATTTCAACTGAGACTACATG | 57.355 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
5437 | 6879 | 2.732500 | CCACTACATTTTACGCGTGACA | 59.267 | 45.455 | 24.59 | 7.29 | 0.00 | 3.58 |
5440 | 6882 | 3.922240 | AGTACCACTACATTTTACGCGTG | 59.078 | 43.478 | 24.59 | 7.13 | 0.00 | 5.34 |
5443 | 6885 | 6.716898 | AAGAAGTACCACTACATTTTACGC | 57.283 | 37.500 | 0.00 | 0.00 | 0.00 | 4.42 |
5444 | 6886 | 8.378421 | GCTTAAGAAGTACCACTACATTTTACG | 58.622 | 37.037 | 6.67 | 0.00 | 0.00 | 3.18 |
5446 | 6888 | 9.781633 | TTGCTTAAGAAGTACCACTACATTTTA | 57.218 | 29.630 | 6.67 | 0.00 | 0.00 | 1.52 |
5447 | 6889 | 8.685838 | TTGCTTAAGAAGTACCACTACATTTT | 57.314 | 30.769 | 6.67 | 0.00 | 0.00 | 1.82 |
5448 | 6890 | 8.685838 | TTTGCTTAAGAAGTACCACTACATTT | 57.314 | 30.769 | 6.67 | 0.00 | 0.00 | 2.32 |
5449 | 6891 | 8.565416 | GTTTTGCTTAAGAAGTACCACTACATT | 58.435 | 33.333 | 6.67 | 0.00 | 0.00 | 2.71 |
5450 | 6892 | 7.937394 | AGTTTTGCTTAAGAAGTACCACTACAT | 59.063 | 33.333 | 6.67 | 0.00 | 0.00 | 2.29 |
5530 | 7098 | 7.931407 | TGACTTGCAAAAACTACATCTAAGAGA | 59.069 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
5567 | 7146 | 8.067784 | ACAACACGTAGACAATAAATGTTTCTG | 58.932 | 33.333 | 0.00 | 0.00 | 44.12 | 3.02 |
5649 | 7323 | 7.065085 | TGCAACATTCTAGCTTTCTGATAACTC | 59.935 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
5662 | 7336 | 7.074502 | GCATCTAGTATTTGCAACATTCTAGC | 58.925 | 38.462 | 19.04 | 11.75 | 36.40 | 3.42 |
5719 | 7394 | 7.930325 | CCAATTAATGTTAGAGATCTGAGCTCA | 59.070 | 37.037 | 23.31 | 17.19 | 34.85 | 4.26 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.