Multiple sequence alignment - TraesCS5B01G506100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G506100 chr5B 100.000 2540 0 0 1 2540 671486723 671489262 0.000000e+00 4691.0
1 TraesCS5B01G506100 chr5B 87.484 791 62 13 947 1734 671713694 671712938 0.000000e+00 878.0
2 TraesCS5B01G506100 chr5B 90.712 646 45 5 298 943 671714371 671713741 0.000000e+00 846.0
3 TraesCS5B01G506100 chr5B 90.635 630 24 13 1739 2335 61557293 61557920 0.000000e+00 804.0
4 TraesCS5B01G506100 chr5B 79.142 676 120 15 950 1618 671503366 671504027 4.980000e-122 448.0
5 TraesCS5B01G506100 chr5B 73.375 477 99 20 948 1410 671302426 671301964 4.380000e-33 152.0
6 TraesCS5B01G506100 chr5B 72.996 474 96 24 954 1410 672440991 672440533 1.230000e-28 137.0
7 TraesCS5B01G506100 chr5D 89.494 790 60 10 947 1734 532278296 532277528 0.000000e+00 977.0
8 TraesCS5B01G506100 chr5D 90.274 658 52 4 298 943 532279000 532278343 0.000000e+00 850.0
9 TraesCS5B01G506100 chr5D 82.411 506 78 8 375 876 532248792 532248294 5.020000e-117 431.0
10 TraesCS5B01G506100 chr5D 81.096 529 82 12 357 877 534605574 534606092 8.460000e-110 407.0
11 TraesCS5B01G506100 chr5D 80.962 520 77 17 357 869 532271361 532271865 2.370000e-105 392.0
12 TraesCS5B01G506100 chr5D 98.624 218 2 1 2324 2540 21352317 21352100 3.960000e-103 385.0
13 TraesCS5B01G506100 chr5D 98.624 218 2 1 2324 2540 333374941 333375158 3.960000e-103 385.0
14 TraesCS5B01G506100 chr5D 82.466 365 52 6 400 764 532244146 532243794 2.450000e-80 309.0
15 TraesCS5B01G506100 chr5D 76.190 546 98 21 342 877 58234438 58234961 2.510000e-65 259.0
16 TraesCS5B01G506100 chr5D 72.372 409 97 15 1082 1478 532272142 532272546 5.740000e-22 115.0
17 TraesCS5B01G506100 chr5D 82.653 98 17 0 371 468 495745108 495745205 1.250000e-13 87.9
18 TraesCS5B01G506100 chr4A 88.086 789 71 10 948 1734 639994136 639994903 0.000000e+00 915.0
19 TraesCS5B01G506100 chr4A 89.577 662 61 6 290 943 639993427 639994088 0.000000e+00 833.0
20 TraesCS5B01G506100 chr4A 88.353 601 60 6 292 884 639954700 639955298 0.000000e+00 713.0
21 TraesCS5B01G506100 chr4A 90.889 450 35 2 298 744 639962001 639962447 1.300000e-167 599.0
22 TraesCS5B01G506100 chr4A 80.460 522 82 15 363 878 640001126 640000619 5.130000e-102 381.0
23 TraesCS5B01G506100 chr4A 79.211 558 90 14 336 872 640002503 640003055 5.160000e-97 364.0
24 TraesCS5B01G506100 chr4A 73.263 475 100 21 948 1410 640056935 640057394 5.660000e-32 148.0
25 TraesCS5B01G506100 chr4A 73.775 408 92 14 1082 1478 640000351 639999948 2.040000e-31 147.0
26 TraesCS5B01G506100 chr4A 73.109 476 92 25 947 1410 640003182 640003633 1.230000e-28 137.0
27 TraesCS5B01G506100 chr3B 93.730 622 14 5 1738 2335 735886054 735886674 0.000000e+00 909.0
28 TraesCS5B01G506100 chr3B 85.563 852 69 24 1734 2540 56529248 56530090 0.000000e+00 843.0
29 TraesCS5B01G506100 chr3B 88.010 392 24 12 1739 2107 600472535 600472926 2.320000e-120 442.0
30 TraesCS5B01G506100 chr4B 87.468 790 85 5 945 1734 14533102 14532327 0.000000e+00 898.0
31 TraesCS5B01G506100 chr4B 87.468 790 86 4 945 1734 15420603 15419827 0.000000e+00 898.0
32 TraesCS5B01G506100 chr4B 89.449 635 53 7 316 943 14533774 14533147 0.000000e+00 789.0
33 TraesCS5B01G506100 chr4B 89.449 635 53 7 316 943 15421275 15420648 0.000000e+00 789.0
34 TraesCS5B01G506100 chr4B 90.818 599 30 7 1738 2317 230793013 230793605 0.000000e+00 778.0
35 TraesCS5B01G506100 chr2B 92.994 628 13 5 1738 2335 331898326 331897700 0.000000e+00 887.0
36 TraesCS5B01G506100 chr2B 91.586 618 26 6 1739 2332 244420113 244420728 0.000000e+00 830.0
37 TraesCS5B01G506100 chr2B 88.683 486 27 17 1861 2328 8507243 8506768 3.670000e-158 568.0
38 TraesCS5B01G506100 chr7B 91.626 609 31 6 1739 2328 561755901 561756508 0.000000e+00 824.0
39 TraesCS5B01G506100 chr7B 91.960 597 25 10 1745 2328 239563253 239562667 0.000000e+00 815.0
40 TraesCS5B01G506100 chr7B 87.534 369 26 11 1745 2107 636342804 636342450 2.350000e-110 409.0
41 TraesCS5B01G506100 chr6A 91.013 612 24 14 1737 2335 308784640 308785233 0.000000e+00 797.0
42 TraesCS5B01G506100 chr6A 98.624 218 2 1 2324 2540 316141260 316141477 3.960000e-103 385.0
43 TraesCS5B01G506100 chr6A 81.481 162 19 9 323 476 52118790 52118632 3.430000e-24 122.0
44 TraesCS5B01G506100 chr7A 89.952 627 32 13 1739 2335 693484782 693485407 0.000000e+00 780.0
45 TraesCS5B01G506100 chr7A 82.796 186 25 6 1735 1916 673070114 673070296 2.620000e-35 159.0
46 TraesCS5B01G506100 chr6B 91.865 504 16 7 1855 2335 378088429 378088930 0.000000e+00 680.0
47 TraesCS5B01G506100 chr2A 89.894 376 24 5 1745 2107 639446962 639446588 2.960000e-129 472.0
48 TraesCS5B01G506100 chr4D 99.083 218 1 1 2324 2540 330466829 330467046 8.520000e-105 390.0
49 TraesCS5B01G506100 chr4D 98.624 218 2 1 2324 2540 458525893 458526110 3.960000e-103 385.0
50 TraesCS5B01G506100 chrUn 98.624 218 2 1 2324 2540 135232615 135232832 3.960000e-103 385.0
51 TraesCS5B01G506100 chrUn 91.007 278 16 3 1838 2107 37018567 37018291 1.440000e-97 366.0
52 TraesCS5B01G506100 chrUn 84.375 96 13 2 1316 1410 67294258 67294164 2.690000e-15 93.5
53 TraesCS5B01G506100 chr3D 98.624 218 2 1 2324 2540 262047794 262048011 3.960000e-103 385.0
54 TraesCS5B01G506100 chr1D 98.624 218 2 1 2324 2540 20480544 20480327 3.960000e-103 385.0
55 TraesCS5B01G506100 chr1D 75.828 513 82 27 364 872 15301230 15300756 3.290000e-54 222.0
56 TraesCS5B01G506100 chr1D 76.768 297 49 10 440 736 15398063 15398339 5.660000e-32 148.0
57 TraesCS5B01G506100 chr2D 92.019 213 17 0 1522 1734 605563119 605562907 1.480000e-77 300.0
58 TraesCS5B01G506100 chr2D 75.187 536 81 24 346 878 647275303 647274817 3.310000e-49 206.0
59 TraesCS5B01G506100 chr7D 76.400 500 101 13 372 869 636779016 636778532 1.170000e-63 254.0
60 TraesCS5B01G506100 chr6D 84.444 90 11 3 388 476 41596437 41596350 4.500000e-13 86.1
61 TraesCS5B01G506100 chr6D 94.737 38 2 0 647 684 28683287 28683250 2.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G506100 chr5B 671486723 671489262 2539 False 4691.0 4691 100.0000 1 2540 1 chr5B.!!$F2 2539
1 TraesCS5B01G506100 chr5B 671712938 671714371 1433 True 862.0 878 89.0980 298 1734 2 chr5B.!!$R3 1436
2 TraesCS5B01G506100 chr5B 61557293 61557920 627 False 804.0 804 90.6350 1739 2335 1 chr5B.!!$F1 596
3 TraesCS5B01G506100 chr5B 671503366 671504027 661 False 448.0 448 79.1420 950 1618 1 chr5B.!!$F3 668
4 TraesCS5B01G506100 chr5D 532277528 532279000 1472 True 913.5 977 89.8840 298 1734 2 chr5D.!!$R4 1436
5 TraesCS5B01G506100 chr5D 534605574 534606092 518 False 407.0 407 81.0960 357 877 1 chr5D.!!$F4 520
6 TraesCS5B01G506100 chr5D 58234438 58234961 523 False 259.0 259 76.1900 342 877 1 chr5D.!!$F1 535
7 TraesCS5B01G506100 chr5D 532271361 532272546 1185 False 253.5 392 76.6670 357 1478 2 chr5D.!!$F5 1121
8 TraesCS5B01G506100 chr4A 639993427 639994903 1476 False 874.0 915 88.8315 290 1734 2 chr4A.!!$F4 1444
9 TraesCS5B01G506100 chr4A 639954700 639955298 598 False 713.0 713 88.3530 292 884 1 chr4A.!!$F1 592
10 TraesCS5B01G506100 chr4A 639999948 640001126 1178 True 264.0 381 77.1175 363 1478 2 chr4A.!!$R1 1115
11 TraesCS5B01G506100 chr4A 640002503 640003633 1130 False 250.5 364 76.1600 336 1410 2 chr4A.!!$F5 1074
12 TraesCS5B01G506100 chr3B 735886054 735886674 620 False 909.0 909 93.7300 1738 2335 1 chr3B.!!$F3 597
13 TraesCS5B01G506100 chr3B 56529248 56530090 842 False 843.0 843 85.5630 1734 2540 1 chr3B.!!$F1 806
14 TraesCS5B01G506100 chr4B 14532327 14533774 1447 True 843.5 898 88.4585 316 1734 2 chr4B.!!$R1 1418
15 TraesCS5B01G506100 chr4B 15419827 15421275 1448 True 843.5 898 88.4585 316 1734 2 chr4B.!!$R2 1418
16 TraesCS5B01G506100 chr4B 230793013 230793605 592 False 778.0 778 90.8180 1738 2317 1 chr4B.!!$F1 579
17 TraesCS5B01G506100 chr2B 331897700 331898326 626 True 887.0 887 92.9940 1738 2335 1 chr2B.!!$R2 597
18 TraesCS5B01G506100 chr2B 244420113 244420728 615 False 830.0 830 91.5860 1739 2332 1 chr2B.!!$F1 593
19 TraesCS5B01G506100 chr7B 561755901 561756508 607 False 824.0 824 91.6260 1739 2328 1 chr7B.!!$F1 589
20 TraesCS5B01G506100 chr7B 239562667 239563253 586 True 815.0 815 91.9600 1745 2328 1 chr7B.!!$R1 583
21 TraesCS5B01G506100 chr6A 308784640 308785233 593 False 797.0 797 91.0130 1737 2335 1 chr6A.!!$F1 598
22 TraesCS5B01G506100 chr7A 693484782 693485407 625 False 780.0 780 89.9520 1739 2335 1 chr7A.!!$F2 596
23 TraesCS5B01G506100 chr6B 378088429 378088930 501 False 680.0 680 91.8650 1855 2335 1 chr6B.!!$F1 480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.165944 GTGGACGCCGTGAGATTTTG 59.834 55.0 0.0 0.0 0.00 2.44 F
1346 1503 0.179097 GAGCTAAAGTCGGAGCAGGG 60.179 60.0 0.0 0.0 41.36 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1510 0.39034 AGCCATGACTAGCACACACG 60.390 55.0 0.00 0.00 0.0 4.49 R
2218 2480 1.82509 ATTCACGGAAGCTTGCATGA 58.175 45.0 12.93 12.93 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.755064 AATTTGATCGTTTTAAGTCAAGATACG 57.245 29.630 0.00 0.00 32.76 3.06
36 37 6.880822 TGATCGTTTTAAGTCAAGATACGG 57.119 37.500 0.00 0.00 0.00 4.02
37 38 5.290158 TGATCGTTTTAAGTCAAGATACGGC 59.710 40.000 0.00 0.00 0.00 5.68
38 39 3.928375 TCGTTTTAAGTCAAGATACGGCC 59.072 43.478 0.00 0.00 0.00 6.13
39 40 3.930848 CGTTTTAAGTCAAGATACGGCCT 59.069 43.478 0.00 0.00 0.00 5.19
40 41 5.104374 CGTTTTAAGTCAAGATACGGCCTA 58.896 41.667 0.00 0.00 0.00 3.93
41 42 5.231568 CGTTTTAAGTCAAGATACGGCCTAG 59.768 44.000 0.00 0.00 0.00 3.02
42 43 4.931661 TTAAGTCAAGATACGGCCTAGG 57.068 45.455 3.67 3.67 0.00 3.02
43 44 2.750141 AGTCAAGATACGGCCTAGGA 57.250 50.000 14.75 0.00 0.00 2.94
44 45 3.246416 AGTCAAGATACGGCCTAGGAT 57.754 47.619 14.75 0.00 0.00 3.24
45 46 4.383931 AGTCAAGATACGGCCTAGGATA 57.616 45.455 14.75 1.22 0.00 2.59
46 47 4.337145 AGTCAAGATACGGCCTAGGATAG 58.663 47.826 14.75 4.91 38.80 2.08
47 48 4.080687 GTCAAGATACGGCCTAGGATAGT 58.919 47.826 14.75 11.06 36.82 2.12
48 49 4.156373 GTCAAGATACGGCCTAGGATAGTC 59.844 50.000 14.75 3.25 36.82 2.59
49 50 2.988570 AGATACGGCCTAGGATAGTCG 58.011 52.381 14.75 9.87 36.82 4.18
50 51 2.305343 AGATACGGCCTAGGATAGTCGT 59.695 50.000 14.75 14.96 44.49 4.34
51 52 2.645838 TACGGCCTAGGATAGTCGTT 57.354 50.000 14.75 2.10 41.47 3.85
52 53 1.030457 ACGGCCTAGGATAGTCGTTG 58.970 55.000 14.75 0.00 41.47 4.10
53 54 1.315690 CGGCCTAGGATAGTCGTTGA 58.684 55.000 14.75 0.00 36.82 3.18
54 55 1.679680 CGGCCTAGGATAGTCGTTGAA 59.320 52.381 14.75 0.00 36.82 2.69
55 56 2.543238 CGGCCTAGGATAGTCGTTGAAC 60.543 54.545 14.75 0.00 36.82 3.18
56 57 2.694109 GGCCTAGGATAGTCGTTGAACT 59.306 50.000 14.75 0.00 36.82 3.01
57 58 3.132467 GGCCTAGGATAGTCGTTGAACTT 59.868 47.826 14.75 0.00 36.82 2.66
58 59 4.113354 GCCTAGGATAGTCGTTGAACTTG 58.887 47.826 14.75 0.00 36.82 3.16
59 60 4.142227 GCCTAGGATAGTCGTTGAACTTGA 60.142 45.833 14.75 0.00 36.82 3.02
60 61 5.623824 GCCTAGGATAGTCGTTGAACTTGAA 60.624 44.000 14.75 0.00 36.82 2.69
61 62 6.395629 CCTAGGATAGTCGTTGAACTTGAAA 58.604 40.000 1.05 0.00 36.82 2.69
62 63 7.042335 CCTAGGATAGTCGTTGAACTTGAAAT 58.958 38.462 1.05 0.00 36.82 2.17
63 64 8.195436 CCTAGGATAGTCGTTGAACTTGAAATA 58.805 37.037 1.05 0.00 36.82 1.40
64 65 9.582431 CTAGGATAGTCGTTGAACTTGAAATAA 57.418 33.333 0.00 0.00 32.85 1.40
66 67 9.449719 AGGATAGTCGTTGAACTTGAAATAATT 57.550 29.630 0.00 0.00 0.00 1.40
72 73 9.434559 GTCGTTGAACTTGAAATAATTATAGGC 57.565 33.333 0.00 0.00 0.00 3.93
73 74 8.617809 TCGTTGAACTTGAAATAATTATAGGCC 58.382 33.333 0.00 0.00 0.00 5.19
74 75 7.586300 CGTTGAACTTGAAATAATTATAGGCCG 59.414 37.037 0.00 0.00 0.00 6.13
75 76 8.403236 GTTGAACTTGAAATAATTATAGGCCGT 58.597 33.333 0.00 0.00 0.00 5.68
76 77 8.514330 TGAACTTGAAATAATTATAGGCCGTT 57.486 30.769 0.00 0.99 0.00 4.44
77 78 8.402472 TGAACTTGAAATAATTATAGGCCGTTG 58.598 33.333 0.00 0.00 0.00 4.10
78 79 6.735130 ACTTGAAATAATTATAGGCCGTTGC 58.265 36.000 0.00 0.00 0.00 4.17
79 80 6.546034 ACTTGAAATAATTATAGGCCGTTGCT 59.454 34.615 0.00 0.00 37.74 3.91
80 81 7.717875 ACTTGAAATAATTATAGGCCGTTGCTA 59.282 33.333 0.00 0.00 37.74 3.49
81 82 8.630054 TTGAAATAATTATAGGCCGTTGCTAT 57.370 30.769 0.00 0.00 37.74 2.97
82 83 9.727859 TTGAAATAATTATAGGCCGTTGCTATA 57.272 29.630 0.00 0.00 37.74 1.31
83 84 9.158233 TGAAATAATTATAGGCCGTTGCTATAC 57.842 33.333 0.00 0.00 37.74 1.47
84 85 9.158233 GAAATAATTATAGGCCGTTGCTATACA 57.842 33.333 0.00 0.00 37.74 2.29
85 86 8.488651 AATAATTATAGGCCGTTGCTATACAC 57.511 34.615 0.00 0.00 37.74 2.90
86 87 4.940905 TTATAGGCCGTTGCTATACACA 57.059 40.909 0.00 0.00 37.74 3.72
87 88 5.477607 TTATAGGCCGTTGCTATACACAT 57.522 39.130 0.00 0.00 37.74 3.21
88 89 1.953559 AGGCCGTTGCTATACACATG 58.046 50.000 0.00 0.00 37.74 3.21
89 90 1.484653 AGGCCGTTGCTATACACATGA 59.515 47.619 0.00 0.00 37.74 3.07
90 91 2.104792 AGGCCGTTGCTATACACATGAT 59.895 45.455 0.00 0.00 37.74 2.45
91 92 2.224079 GGCCGTTGCTATACACATGATG 59.776 50.000 0.00 0.00 37.74 3.07
92 93 2.872245 GCCGTTGCTATACACATGATGT 59.128 45.455 0.00 2.78 38.89 3.06
93 94 3.059597 GCCGTTGCTATACACATGATGTC 60.060 47.826 0.00 0.00 37.34 3.06
94 95 4.119136 CCGTTGCTATACACATGATGTCA 58.881 43.478 0.00 0.00 42.09 3.58
95 96 4.751600 CCGTTGCTATACACATGATGTCAT 59.248 41.667 0.00 0.00 42.09 3.06
96 97 8.678207 GCCGTTGCTATACACATGATGTCATG 62.678 46.154 18.75 18.75 45.57 3.07
109 110 4.789784 TGATGTCATGCGCATCATTTATG 58.210 39.130 22.51 9.50 45.18 1.90
110 111 3.629438 TGTCATGCGCATCATTTATGG 57.371 42.857 22.51 6.85 35.99 2.74
111 112 3.212685 TGTCATGCGCATCATTTATGGA 58.787 40.909 22.51 9.43 35.99 3.41
112 113 3.003585 TGTCATGCGCATCATTTATGGAC 59.996 43.478 22.51 21.07 35.99 4.02
113 114 2.223845 TCATGCGCATCATTTATGGACG 59.776 45.455 22.51 4.64 35.99 4.79
114 115 1.946745 TGCGCATCATTTATGGACGA 58.053 45.000 5.66 0.00 35.99 4.20
115 116 2.493035 TGCGCATCATTTATGGACGAT 58.507 42.857 5.66 0.00 35.99 3.73
116 117 2.223845 TGCGCATCATTTATGGACGATG 59.776 45.455 5.66 0.00 38.61 3.84
117 118 2.224079 GCGCATCATTTATGGACGATGT 59.776 45.455 0.30 0.00 38.01 3.06
118 119 3.303990 GCGCATCATTTATGGACGATGTT 60.304 43.478 0.30 0.00 38.01 2.71
119 120 4.213674 CGCATCATTTATGGACGATGTTG 58.786 43.478 0.00 0.00 38.01 3.33
120 121 3.976942 GCATCATTTATGGACGATGTTGC 59.023 43.478 0.00 0.00 38.52 4.17
121 122 4.261322 GCATCATTTATGGACGATGTTGCT 60.261 41.667 9.94 0.00 40.61 3.91
122 123 5.049474 GCATCATTTATGGACGATGTTGCTA 60.049 40.000 9.94 0.00 40.61 3.49
123 124 6.513230 GCATCATTTATGGACGATGTTGCTAA 60.513 38.462 9.94 0.00 40.61 3.09
124 125 7.587629 CATCATTTATGGACGATGTTGCTAAT 58.412 34.615 0.00 0.00 32.41 1.73
125 126 7.189693 TCATTTATGGACGATGTTGCTAATC 57.810 36.000 0.00 0.00 0.00 1.75
126 127 6.765512 TCATTTATGGACGATGTTGCTAATCA 59.234 34.615 0.00 0.00 0.00 2.57
127 128 6.993786 TTTATGGACGATGTTGCTAATCAA 57.006 33.333 0.00 0.00 0.00 2.57
128 129 6.993786 TTATGGACGATGTTGCTAATCAAA 57.006 33.333 0.00 0.00 36.26 2.69
129 130 4.678509 TGGACGATGTTGCTAATCAAAC 57.321 40.909 0.00 0.00 36.26 2.93
130 131 3.438781 TGGACGATGTTGCTAATCAAACC 59.561 43.478 0.00 0.00 36.26 3.27
131 132 3.485216 GGACGATGTTGCTAATCAAACCG 60.485 47.826 0.00 0.00 36.26 4.44
132 133 3.071479 ACGATGTTGCTAATCAAACCGT 58.929 40.909 0.00 0.00 36.26 4.83
133 134 3.500680 ACGATGTTGCTAATCAAACCGTT 59.499 39.130 0.00 0.00 36.26 4.44
134 135 3.845775 CGATGTTGCTAATCAAACCGTTG 59.154 43.478 0.00 0.00 36.26 4.10
135 136 3.634568 TGTTGCTAATCAAACCGTTGG 57.365 42.857 0.00 0.00 36.26 3.77
136 137 2.952978 TGTTGCTAATCAAACCGTTGGT 59.047 40.909 0.00 0.00 36.26 3.67
137 138 3.243234 TGTTGCTAATCAAACCGTTGGTG 60.243 43.478 0.00 0.00 35.34 4.17
138 139 1.883275 TGCTAATCAAACCGTTGGTGG 59.117 47.619 0.00 0.00 35.34 4.61
139 140 2.156098 GCTAATCAAACCGTTGGTGGA 58.844 47.619 0.00 0.00 35.34 4.02
140 141 2.095415 GCTAATCAAACCGTTGGTGGAC 60.095 50.000 0.00 0.00 35.34 4.02
141 142 0.948678 AATCAAACCGTTGGTGGACG 59.051 50.000 0.00 0.00 42.43 4.79
142 143 1.512156 ATCAAACCGTTGGTGGACGC 61.512 55.000 0.00 0.00 41.50 5.19
143 144 2.903350 AAACCGTTGGTGGACGCC 60.903 61.111 0.00 0.00 41.50 5.68
147 148 4.953868 CGTTGGTGGACGCCGTGA 62.954 66.667 0.00 0.00 36.12 4.35
148 149 3.041940 GTTGGTGGACGCCGTGAG 61.042 66.667 0.00 0.00 0.00 3.51
149 150 3.228017 TTGGTGGACGCCGTGAGA 61.228 61.111 0.00 0.00 0.00 3.27
150 151 2.579657 TTGGTGGACGCCGTGAGAT 61.580 57.895 0.00 0.00 0.00 2.75
151 152 2.107041 TTGGTGGACGCCGTGAGATT 62.107 55.000 0.00 0.00 0.00 2.40
152 153 1.375523 GGTGGACGCCGTGAGATTT 60.376 57.895 0.00 0.00 0.00 2.17
153 154 0.953960 GGTGGACGCCGTGAGATTTT 60.954 55.000 0.00 0.00 0.00 1.82
154 155 0.165944 GTGGACGCCGTGAGATTTTG 59.834 55.000 0.00 0.00 0.00 2.44
155 156 1.134694 GGACGCCGTGAGATTTTGC 59.865 57.895 0.00 0.00 0.00 3.68
156 157 1.573829 GGACGCCGTGAGATTTTGCA 61.574 55.000 0.00 0.00 0.00 4.08
157 158 0.447801 GACGCCGTGAGATTTTGCAT 59.552 50.000 0.00 0.00 0.00 3.96
158 159 0.447801 ACGCCGTGAGATTTTGCATC 59.552 50.000 0.00 0.00 0.00 3.91
159 160 0.587242 CGCCGTGAGATTTTGCATCG 60.587 55.000 0.00 0.00 0.00 3.84
160 161 0.447801 GCCGTGAGATTTTGCATCGT 59.552 50.000 0.00 0.00 0.00 3.73
161 162 1.135689 GCCGTGAGATTTTGCATCGTT 60.136 47.619 0.00 0.00 0.00 3.85
162 163 2.774007 CCGTGAGATTTTGCATCGTTC 58.226 47.619 0.00 0.00 0.00 3.95
163 164 2.476185 CCGTGAGATTTTGCATCGTTCC 60.476 50.000 0.00 0.00 0.00 3.62
164 165 2.416547 CGTGAGATTTTGCATCGTTCCT 59.583 45.455 0.00 0.00 0.00 3.36
165 166 3.616821 CGTGAGATTTTGCATCGTTCCTA 59.383 43.478 0.00 0.00 0.00 2.94
166 167 4.092821 CGTGAGATTTTGCATCGTTCCTAA 59.907 41.667 0.00 0.00 0.00 2.69
167 168 5.390461 CGTGAGATTTTGCATCGTTCCTAAA 60.390 40.000 0.00 0.00 0.00 1.85
168 169 6.555315 GTGAGATTTTGCATCGTTCCTAAAT 58.445 36.000 0.00 0.00 0.00 1.40
169 170 7.029563 GTGAGATTTTGCATCGTTCCTAAATT 58.970 34.615 0.00 0.00 0.00 1.82
170 171 7.008628 GTGAGATTTTGCATCGTTCCTAAATTG 59.991 37.037 0.00 0.00 0.00 2.32
171 172 6.332630 AGATTTTGCATCGTTCCTAAATTGG 58.667 36.000 0.00 0.00 0.00 3.16
172 173 5.461032 TTTTGCATCGTTCCTAAATTGGT 57.539 34.783 0.00 0.00 0.00 3.67
173 174 4.433186 TTGCATCGTTCCTAAATTGGTG 57.567 40.909 0.00 0.00 0.00 4.17
174 175 3.680490 TGCATCGTTCCTAAATTGGTGA 58.320 40.909 0.00 0.00 0.00 4.02
175 176 3.689161 TGCATCGTTCCTAAATTGGTGAG 59.311 43.478 0.00 0.00 0.00 3.51
176 177 3.065371 GCATCGTTCCTAAATTGGTGAGG 59.935 47.826 0.00 0.00 0.00 3.86
177 178 2.706890 TCGTTCCTAAATTGGTGAGGC 58.293 47.619 0.00 0.00 0.00 4.70
178 179 2.039216 TCGTTCCTAAATTGGTGAGGCA 59.961 45.455 0.00 0.00 0.00 4.75
179 180 3.016736 CGTTCCTAAATTGGTGAGGCAT 58.983 45.455 0.00 0.00 0.00 4.40
180 181 3.181497 CGTTCCTAAATTGGTGAGGCATG 60.181 47.826 0.00 0.00 0.00 4.06
181 182 3.737559 TCCTAAATTGGTGAGGCATGT 57.262 42.857 0.00 0.00 0.00 3.21
182 183 3.620488 TCCTAAATTGGTGAGGCATGTC 58.380 45.455 0.00 0.00 0.00 3.06
183 184 3.010027 TCCTAAATTGGTGAGGCATGTCA 59.990 43.478 0.00 0.00 0.00 3.58
184 185 3.129287 CCTAAATTGGTGAGGCATGTCAC 59.871 47.826 0.00 3.83 45.30 3.67
185 186 1.167851 AATTGGTGAGGCATGTCACG 58.832 50.000 0.00 0.00 46.72 4.35
186 187 1.308069 ATTGGTGAGGCATGTCACGC 61.308 55.000 0.00 0.00 46.72 5.34
187 188 3.490759 GGTGAGGCATGTCACGCG 61.491 66.667 3.53 3.53 46.72 6.01
188 189 4.152625 GTGAGGCATGTCACGCGC 62.153 66.667 5.73 0.00 37.69 6.86
189 190 4.678499 TGAGGCATGTCACGCGCA 62.678 61.111 5.73 0.00 0.00 6.09
190 191 3.422303 GAGGCATGTCACGCGCAA 61.422 61.111 5.73 0.00 0.00 4.85
191 192 2.965147 GAGGCATGTCACGCGCAAA 61.965 57.895 5.73 0.00 0.00 3.68
192 193 2.502510 GGCATGTCACGCGCAAAG 60.503 61.111 5.73 0.00 0.00 2.77
193 194 2.252260 GCATGTCACGCGCAAAGT 59.748 55.556 5.73 0.00 0.00 2.66
194 195 1.495509 GCATGTCACGCGCAAAGTA 59.504 52.632 5.73 0.00 0.00 2.24
195 196 0.519175 GCATGTCACGCGCAAAGTAG 60.519 55.000 5.73 0.00 0.00 2.57
196 197 0.790207 CATGTCACGCGCAAAGTAGT 59.210 50.000 5.73 0.00 0.00 2.73
197 198 1.194547 CATGTCACGCGCAAAGTAGTT 59.805 47.619 5.73 0.00 0.00 2.24
198 199 1.292061 TGTCACGCGCAAAGTAGTTT 58.708 45.000 5.73 0.00 0.00 2.66
199 200 1.259507 TGTCACGCGCAAAGTAGTTTC 59.740 47.619 5.73 0.00 0.00 2.78
200 201 1.259507 GTCACGCGCAAAGTAGTTTCA 59.740 47.619 5.73 0.00 0.00 2.69
201 202 1.934525 TCACGCGCAAAGTAGTTTCAA 59.065 42.857 5.73 0.00 0.00 2.69
202 203 2.352034 TCACGCGCAAAGTAGTTTCAAA 59.648 40.909 5.73 0.00 0.00 2.69
203 204 2.462565 CACGCGCAAAGTAGTTTCAAAC 59.537 45.455 5.73 0.00 0.00 2.93
204 205 2.096174 ACGCGCAAAGTAGTTTCAAACA 59.904 40.909 5.73 0.00 0.00 2.83
205 206 2.462565 CGCGCAAAGTAGTTTCAAACAC 59.537 45.455 8.75 0.00 0.00 3.32
206 207 3.430931 GCGCAAAGTAGTTTCAAACACA 58.569 40.909 0.30 0.00 0.00 3.72
207 208 4.041723 GCGCAAAGTAGTTTCAAACACAT 58.958 39.130 0.30 0.00 0.00 3.21
208 209 4.085619 GCGCAAAGTAGTTTCAAACACATG 60.086 41.667 0.30 0.00 0.00 3.21
209 210 5.034152 CGCAAAGTAGTTTCAAACACATGT 58.966 37.500 2.41 0.00 0.00 3.21
210 211 6.195868 CGCAAAGTAGTTTCAAACACATGTA 58.804 36.000 2.41 0.00 0.00 2.29
211 212 6.855914 CGCAAAGTAGTTTCAAACACATGTAT 59.144 34.615 2.41 0.00 0.00 2.29
212 213 8.012809 CGCAAAGTAGTTTCAAACACATGTATA 58.987 33.333 2.41 0.00 0.00 1.47
213 214 9.840427 GCAAAGTAGTTTCAAACACATGTATAT 57.160 29.630 2.41 0.00 0.00 0.86
237 238 7.624360 TTTACAATTGTGAGACTTTGTGACT 57.376 32.000 21.42 0.00 34.39 3.41
238 239 7.624360 TTACAATTGTGAGACTTTGTGACTT 57.376 32.000 21.42 0.00 34.39 3.01
239 240 6.515272 ACAATTGTGAGACTTTGTGACTTT 57.485 33.333 11.07 0.00 31.45 2.66
240 241 7.624360 ACAATTGTGAGACTTTGTGACTTTA 57.376 32.000 11.07 0.00 31.45 1.85
241 242 8.050778 ACAATTGTGAGACTTTGTGACTTTAA 57.949 30.769 11.07 0.00 31.45 1.52
242 243 8.184192 ACAATTGTGAGACTTTGTGACTTTAAG 58.816 33.333 11.07 0.00 31.45 1.85
243 244 6.677781 TTGTGAGACTTTGTGACTTTAAGG 57.322 37.500 0.00 0.00 0.00 2.69
244 245 5.741011 TGTGAGACTTTGTGACTTTAAGGT 58.259 37.500 0.00 0.00 0.00 3.50
245 246 6.880484 TGTGAGACTTTGTGACTTTAAGGTA 58.120 36.000 0.00 0.00 0.00 3.08
246 247 7.332557 TGTGAGACTTTGTGACTTTAAGGTAA 58.667 34.615 0.00 0.00 0.00 2.85
247 248 7.990886 TGTGAGACTTTGTGACTTTAAGGTAAT 59.009 33.333 0.00 0.00 0.00 1.89
248 249 8.283291 GTGAGACTTTGTGACTTTAAGGTAATG 58.717 37.037 0.00 0.00 0.00 1.90
249 250 7.444183 TGAGACTTTGTGACTTTAAGGTAATGG 59.556 37.037 0.00 0.00 0.00 3.16
250 251 7.514721 AGACTTTGTGACTTTAAGGTAATGGA 58.485 34.615 0.00 0.00 0.00 3.41
251 252 8.164070 AGACTTTGTGACTTTAAGGTAATGGAT 58.836 33.333 0.00 0.00 0.00 3.41
252 253 8.706322 ACTTTGTGACTTTAAGGTAATGGATT 57.294 30.769 0.00 0.00 0.00 3.01
253 254 8.793592 ACTTTGTGACTTTAAGGTAATGGATTC 58.206 33.333 0.00 0.00 0.00 2.52
254 255 6.978343 TGTGACTTTAAGGTAATGGATTCG 57.022 37.500 0.00 0.00 0.00 3.34
255 256 5.878116 TGTGACTTTAAGGTAATGGATTCGG 59.122 40.000 0.00 0.00 0.00 4.30
256 257 5.878669 GTGACTTTAAGGTAATGGATTCGGT 59.121 40.000 0.00 0.00 0.00 4.69
257 258 7.043565 GTGACTTTAAGGTAATGGATTCGGTA 58.956 38.462 0.00 0.00 0.00 4.02
258 259 7.224167 GTGACTTTAAGGTAATGGATTCGGTAG 59.776 40.741 0.00 0.00 0.00 3.18
259 260 6.589135 ACTTTAAGGTAATGGATTCGGTAGG 58.411 40.000 0.00 0.00 0.00 3.18
260 261 5.556006 TTAAGGTAATGGATTCGGTAGGG 57.444 43.478 0.00 0.00 0.00 3.53
261 262 3.339713 AGGTAATGGATTCGGTAGGGA 57.660 47.619 0.00 0.00 0.00 4.20
262 263 3.660959 AGGTAATGGATTCGGTAGGGAA 58.339 45.455 0.00 0.00 0.00 3.97
263 264 3.390311 AGGTAATGGATTCGGTAGGGAAC 59.610 47.826 0.00 0.00 0.00 3.62
265 266 3.560636 AATGGATTCGGTAGGGAACTG 57.439 47.619 0.00 0.00 43.88 3.16
266 267 2.241281 TGGATTCGGTAGGGAACTGA 57.759 50.000 0.00 0.00 43.88 3.41
267 268 2.108168 TGGATTCGGTAGGGAACTGAG 58.892 52.381 0.00 0.00 44.36 3.35
268 269 2.108970 GGATTCGGTAGGGAACTGAGT 58.891 52.381 0.00 0.00 44.36 3.41
269 270 3.294214 GGATTCGGTAGGGAACTGAGTA 58.706 50.000 0.00 0.00 44.36 2.59
270 271 3.318557 GGATTCGGTAGGGAACTGAGTAG 59.681 52.174 0.00 0.00 44.36 2.57
271 272 3.446442 TTCGGTAGGGAACTGAGTAGT 57.554 47.619 0.00 0.00 44.36 2.73
272 273 2.996631 TCGGTAGGGAACTGAGTAGTC 58.003 52.381 0.00 0.00 43.88 2.59
273 274 2.306805 TCGGTAGGGAACTGAGTAGTCA 59.693 50.000 0.00 0.00 43.88 3.41
274 275 3.087031 CGGTAGGGAACTGAGTAGTCAA 58.913 50.000 1.11 0.00 43.88 3.18
275 276 3.128938 CGGTAGGGAACTGAGTAGTCAAG 59.871 52.174 1.11 0.00 43.88 3.02
276 277 4.342359 GGTAGGGAACTGAGTAGTCAAGA 58.658 47.826 1.11 0.00 43.88 3.02
277 278 4.771054 GGTAGGGAACTGAGTAGTCAAGAA 59.229 45.833 1.11 0.00 43.88 2.52
278 279 5.245526 GGTAGGGAACTGAGTAGTCAAGAAA 59.754 44.000 1.11 0.00 43.88 2.52
279 280 6.070710 GGTAGGGAACTGAGTAGTCAAGAAAT 60.071 42.308 1.11 0.00 43.88 2.17
280 281 7.123847 GGTAGGGAACTGAGTAGTCAAGAAATA 59.876 40.741 1.11 0.00 43.88 1.40
281 282 7.176589 AGGGAACTGAGTAGTCAAGAAATAG 57.823 40.000 1.11 0.00 41.13 1.73
282 283 6.726764 AGGGAACTGAGTAGTCAAGAAATAGT 59.273 38.462 1.11 0.00 41.13 2.12
283 284 6.814146 GGGAACTGAGTAGTCAAGAAATAGTG 59.186 42.308 1.11 0.00 35.69 2.74
284 285 6.814146 GGAACTGAGTAGTCAAGAAATAGTGG 59.186 42.308 1.11 0.00 35.69 4.00
285 286 6.919775 ACTGAGTAGTCAAGAAATAGTGGT 57.080 37.500 1.11 0.00 28.79 4.16
286 287 6.926313 ACTGAGTAGTCAAGAAATAGTGGTC 58.074 40.000 1.11 0.00 28.79 4.02
287 288 6.493802 ACTGAGTAGTCAAGAAATAGTGGTCA 59.506 38.462 1.11 0.00 28.79 4.02
288 289 6.925211 TGAGTAGTCAAGAAATAGTGGTCAG 58.075 40.000 0.00 0.00 0.00 3.51
289 290 6.719829 TGAGTAGTCAAGAAATAGTGGTCAGA 59.280 38.462 0.00 0.00 0.00 3.27
290 291 7.094162 TGAGTAGTCAAGAAATAGTGGTCAGAG 60.094 40.741 0.00 0.00 0.00 3.35
291 292 6.722129 AGTAGTCAAGAAATAGTGGTCAGAGT 59.278 38.462 0.00 0.00 0.00 3.24
292 293 6.426646 AGTCAAGAAATAGTGGTCAGAGTT 57.573 37.500 0.00 0.00 0.00 3.01
293 294 6.459923 AGTCAAGAAATAGTGGTCAGAGTTC 58.540 40.000 0.00 0.00 0.00 3.01
294 295 5.346281 GTCAAGAAATAGTGGTCAGAGTTCG 59.654 44.000 0.00 0.00 0.00 3.95
295 296 4.457834 AGAAATAGTGGTCAGAGTTCGG 57.542 45.455 0.00 0.00 0.00 4.30
480 523 2.045536 CTGCAAGGCCTGGAGGAC 60.046 66.667 12.85 0.00 46.16 3.85
595 644 1.141019 GCGCATCCCTGACTTCGTA 59.859 57.895 0.30 0.00 0.00 3.43
600 649 1.762957 CATCCCTGACTTCGTACCCAT 59.237 52.381 0.00 0.00 0.00 4.00
604 653 1.548719 CCTGACTTCGTACCCATCACA 59.451 52.381 0.00 0.00 0.00 3.58
631 683 4.761058 TTCTCCCTCGCCGCTCCT 62.761 66.667 0.00 0.00 0.00 3.69
736 797 1.379044 CCTGTGGGAGCCAATCACC 60.379 63.158 0.00 0.00 34.18 4.02
878 946 1.538512 TCTTCGTCTTCACCGTCGATT 59.461 47.619 0.00 0.00 32.54 3.34
912 986 1.554042 GACGTTGTCACATCGGCGTT 61.554 55.000 12.73 0.00 31.83 4.84
919 993 2.268298 GTCACATCGGCGTTCTTGTAT 58.732 47.619 6.85 0.00 0.00 2.29
930 1004 3.692576 CGTTCTTGTATTCGTCGGAGAT 58.307 45.455 0.00 0.00 40.67 2.75
937 1011 0.537188 ATTCGTCGGAGATTGGCACT 59.463 50.000 0.00 0.00 40.67 4.40
943 1017 1.384191 GGAGATTGGCACTTGGGGT 59.616 57.895 0.00 0.00 0.00 4.95
993 1120 2.028130 CTGCTCTACTTCCTGTCCGAT 58.972 52.381 0.00 0.00 0.00 4.18
1066 1193 1.749665 CCACCACCAGACGGTTACA 59.250 57.895 0.00 0.00 46.31 2.41
1216 1361 2.227089 GAGCCGGATTGTCGACCTGT 62.227 60.000 14.12 0.00 0.00 4.00
1217 1362 1.375523 GCCGGATTGTCGACCTGTT 60.376 57.895 14.12 0.00 0.00 3.16
1219 1364 0.796312 CCGGATTGTCGACCTGTTTG 59.204 55.000 14.12 0.00 0.00 2.93
1220 1371 1.606994 CCGGATTGTCGACCTGTTTGA 60.607 52.381 14.12 0.00 0.00 2.69
1230 1387 3.146066 CGACCTGTTTGATTTTCTCCCA 58.854 45.455 0.00 0.00 0.00 4.37
1231 1388 3.568007 CGACCTGTTTGATTTTCTCCCAA 59.432 43.478 0.00 0.00 0.00 4.12
1232 1389 4.218417 CGACCTGTTTGATTTTCTCCCAAT 59.782 41.667 0.00 0.00 0.00 3.16
1234 1391 5.857268 ACCTGTTTGATTTTCTCCCAATTG 58.143 37.500 0.00 0.00 0.00 2.32
1243 1400 5.782893 TTTTCTCCCAATTGTTGTCGATT 57.217 34.783 4.43 0.00 0.00 3.34
1250 1407 5.982516 TCCCAATTGTTGTCGATTCAAAAAG 59.017 36.000 4.43 0.00 29.66 2.27
1252 1409 6.074356 CCCAATTGTTGTCGATTCAAAAAGTC 60.074 38.462 4.43 0.00 29.66 3.01
1253 1410 6.697019 CCAATTGTTGTCGATTCAAAAAGTCT 59.303 34.615 4.43 0.00 29.66 3.24
1255 1412 8.594687 CAATTGTTGTCGATTCAAAAAGTCTTT 58.405 29.630 0.00 0.00 29.66 2.52
1300 1457 5.497474 AGGGAGTAAATGCTATTTTCGTGT 58.503 37.500 0.00 0.00 0.00 4.49
1301 1458 5.585047 AGGGAGTAAATGCTATTTTCGTGTC 59.415 40.000 0.00 0.00 0.00 3.67
1333 1490 7.661847 TGTATAGTCTCTTCATGATCGAGCTAA 59.338 37.037 18.77 0.00 0.00 3.09
1346 1503 0.179097 GAGCTAAAGTCGGAGCAGGG 60.179 60.000 0.00 0.00 41.36 4.45
1353 1510 0.250770 AGTCGGAGCAGGGGAAAAAC 60.251 55.000 0.00 0.00 0.00 2.43
1380 1537 3.619038 GTGCTAGTCATGGCTTCTGTAAC 59.381 47.826 4.49 0.00 33.27 2.50
1415 1572 4.202357 TGTCAGCTTCTACACTCCACATTT 60.202 41.667 0.00 0.00 0.00 2.32
1498 1658 2.520968 GGTGGTCAGCAAGGGGTT 59.479 61.111 0.00 0.00 0.00 4.11
1514 1674 2.621668 GGGGTTTGGGAGGAGAAATCAG 60.622 54.545 0.00 0.00 0.00 2.90
1561 1721 0.034089 AGGGGTGCAAGGCTATCAAC 60.034 55.000 0.00 0.00 0.00 3.18
1607 1767 1.675116 GCTGCTTCAGACATGCTCTCA 60.675 52.381 0.00 0.00 32.44 3.27
1665 1825 1.133356 TCTCCTAGCTAGGCATGCTGA 60.133 52.381 31.76 18.84 43.31 4.26
1691 1851 5.986004 AGCGTAACTTATGGATAGTTTGC 57.014 39.130 0.00 0.00 37.12 3.68
1692 1852 4.814771 AGCGTAACTTATGGATAGTTTGCC 59.185 41.667 0.00 0.00 36.90 4.52
1697 1857 4.196971 ACTTATGGATAGTTTGCCGGAAC 58.803 43.478 5.05 0.54 0.00 3.62
1734 1894 7.649306 AGTTAGTTCATTGTTCTTTTCATGTGC 59.351 33.333 0.00 0.00 0.00 4.57
1735 1895 5.904941 AGTTCATTGTTCTTTTCATGTGCA 58.095 33.333 0.00 0.00 0.00 4.57
1741 1901 5.119931 TGTTCTTTTCATGTGCATACACC 57.880 39.130 0.00 0.00 46.86 4.16
1801 1962 1.890625 TAATGGCGCACTACCGGTGT 61.891 55.000 19.93 10.78 46.86 4.16
1857 2031 1.760029 TGGTGCGCCATTAGTATCTGA 59.240 47.619 16.89 0.00 40.46 3.27
1906 2080 3.447229 GCCATTAGTTTTGCCCATAGTGT 59.553 43.478 0.00 0.00 0.00 3.55
2057 2249 6.827251 AGCATCCATATAACAATCATAGCCAG 59.173 38.462 0.00 0.00 0.00 4.85
2218 2480 6.480981 CACAAATGAAAAAGAAGCACTCCATT 59.519 34.615 0.00 0.00 0.00 3.16
2336 2627 9.566530 GAAGAAGAATAAGAAGAATTTTGGAGC 57.433 33.333 0.00 0.00 0.00 4.70
2337 2628 8.876303 AGAAGAATAAGAAGAATTTTGGAGCT 57.124 30.769 0.00 0.00 0.00 4.09
2338 2629 9.965902 AGAAGAATAAGAAGAATTTTGGAGCTA 57.034 29.630 0.00 0.00 0.00 3.32
2347 2642 8.993424 AGAAGAATTTTGGAGCTAACCTATAGA 58.007 33.333 0.00 0.00 0.00 1.98
2375 2670 6.931840 ACTAAGCATATAAGCTCCAAGTTAGC 59.068 38.462 2.41 0.00 45.89 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.755064 CGTATCTTGACTTAAAACGATCAAATT 57.245 29.630 0.00 0.00 31.00 1.82
10 11 8.388103 CCGTATCTTGACTTAAAACGATCAAAT 58.612 33.333 0.00 0.00 31.00 2.32
11 12 7.622672 GCCGTATCTTGACTTAAAACGATCAAA 60.623 37.037 0.00 0.00 31.00 2.69
12 13 6.183360 GCCGTATCTTGACTTAAAACGATCAA 60.183 38.462 0.00 0.00 0.00 2.57
13 14 5.290158 GCCGTATCTTGACTTAAAACGATCA 59.710 40.000 0.00 0.00 0.00 2.92
14 15 5.276726 GGCCGTATCTTGACTTAAAACGATC 60.277 44.000 0.00 0.00 0.00 3.69
15 16 4.569564 GGCCGTATCTTGACTTAAAACGAT 59.430 41.667 0.00 0.00 0.00 3.73
16 17 3.928375 GGCCGTATCTTGACTTAAAACGA 59.072 43.478 0.00 0.00 0.00 3.85
17 18 3.930848 AGGCCGTATCTTGACTTAAAACG 59.069 43.478 0.00 0.00 0.00 3.60
18 19 5.522824 CCTAGGCCGTATCTTGACTTAAAAC 59.477 44.000 0.00 0.00 0.00 2.43
19 20 5.422970 TCCTAGGCCGTATCTTGACTTAAAA 59.577 40.000 2.96 0.00 0.00 1.52
20 21 4.957954 TCCTAGGCCGTATCTTGACTTAAA 59.042 41.667 2.96 0.00 0.00 1.52
21 22 4.539726 TCCTAGGCCGTATCTTGACTTAA 58.460 43.478 2.96 0.00 0.00 1.85
22 23 4.174704 TCCTAGGCCGTATCTTGACTTA 57.825 45.455 2.96 0.00 0.00 2.24
23 24 3.028094 TCCTAGGCCGTATCTTGACTT 57.972 47.619 2.96 0.00 0.00 3.01
24 25 2.750141 TCCTAGGCCGTATCTTGACT 57.250 50.000 2.96 0.00 0.00 3.41
25 26 4.080687 ACTATCCTAGGCCGTATCTTGAC 58.919 47.826 2.96 0.00 0.00 3.18
26 27 4.333690 GACTATCCTAGGCCGTATCTTGA 58.666 47.826 2.96 0.00 0.00 3.02
27 28 3.127203 CGACTATCCTAGGCCGTATCTTG 59.873 52.174 2.96 0.00 0.00 3.02
28 29 3.244840 ACGACTATCCTAGGCCGTATCTT 60.245 47.826 2.96 0.00 37.40 2.40
29 30 2.305343 ACGACTATCCTAGGCCGTATCT 59.695 50.000 2.96 0.00 37.40 1.98
30 31 2.709213 ACGACTATCCTAGGCCGTATC 58.291 52.381 2.96 0.00 37.40 2.24
31 32 2.818432 CAACGACTATCCTAGGCCGTAT 59.182 50.000 2.96 0.00 37.90 3.06
32 33 2.158769 TCAACGACTATCCTAGGCCGTA 60.159 50.000 2.96 0.00 37.90 4.02
33 34 1.030457 CAACGACTATCCTAGGCCGT 58.970 55.000 2.96 5.60 39.56 5.68
34 35 1.315690 TCAACGACTATCCTAGGCCG 58.684 55.000 2.96 4.97 34.00 6.13
35 36 2.694109 AGTTCAACGACTATCCTAGGCC 59.306 50.000 2.96 0.00 0.00 5.19
36 37 4.113354 CAAGTTCAACGACTATCCTAGGC 58.887 47.826 2.96 0.00 0.00 3.93
37 38 5.578005 TCAAGTTCAACGACTATCCTAGG 57.422 43.478 0.82 0.82 0.00 3.02
38 39 9.582431 TTATTTCAAGTTCAACGACTATCCTAG 57.418 33.333 0.00 0.00 0.00 3.02
40 41 9.449719 AATTATTTCAAGTTCAACGACTATCCT 57.550 29.630 0.00 0.00 0.00 3.24
46 47 9.434559 GCCTATAATTATTTCAAGTTCAACGAC 57.565 33.333 2.68 0.00 0.00 4.34
47 48 8.617809 GGCCTATAATTATTTCAAGTTCAACGA 58.382 33.333 2.68 0.00 0.00 3.85
48 49 7.586300 CGGCCTATAATTATTTCAAGTTCAACG 59.414 37.037 2.68 0.00 0.00 4.10
49 50 8.403236 ACGGCCTATAATTATTTCAAGTTCAAC 58.597 33.333 2.68 0.00 0.00 3.18
50 51 8.514330 ACGGCCTATAATTATTTCAAGTTCAA 57.486 30.769 2.68 0.00 0.00 2.69
51 52 8.402472 CAACGGCCTATAATTATTTCAAGTTCA 58.598 33.333 2.68 0.00 0.00 3.18
52 53 7.378728 GCAACGGCCTATAATTATTTCAAGTTC 59.621 37.037 2.68 0.00 0.00 3.01
53 54 7.068226 AGCAACGGCCTATAATTATTTCAAGTT 59.932 33.333 2.68 3.44 42.56 2.66
54 55 6.546034 AGCAACGGCCTATAATTATTTCAAGT 59.454 34.615 2.68 0.00 42.56 3.16
55 56 6.970484 AGCAACGGCCTATAATTATTTCAAG 58.030 36.000 2.68 0.00 42.56 3.02
56 57 6.952773 AGCAACGGCCTATAATTATTTCAA 57.047 33.333 2.68 0.00 42.56 2.69
57 58 9.158233 GTATAGCAACGGCCTATAATTATTTCA 57.842 33.333 2.68 0.00 42.56 2.69
58 59 9.158233 TGTATAGCAACGGCCTATAATTATTTC 57.842 33.333 2.68 0.00 42.56 2.17
59 60 8.943002 GTGTATAGCAACGGCCTATAATTATTT 58.057 33.333 2.68 0.00 42.56 1.40
60 61 8.098286 TGTGTATAGCAACGGCCTATAATTATT 58.902 33.333 2.68 0.00 42.56 1.40
61 62 7.617225 TGTGTATAGCAACGGCCTATAATTAT 58.383 34.615 0.00 2.97 42.56 1.28
62 63 6.995364 TGTGTATAGCAACGGCCTATAATTA 58.005 36.000 0.00 0.00 42.56 1.40
63 64 5.860611 TGTGTATAGCAACGGCCTATAATT 58.139 37.500 0.00 0.00 42.56 1.40
64 65 5.477607 TGTGTATAGCAACGGCCTATAAT 57.522 39.130 0.00 0.00 42.56 1.28
65 66 4.940905 TGTGTATAGCAACGGCCTATAA 57.059 40.909 0.00 0.00 42.56 0.98
66 67 4.525100 TCATGTGTATAGCAACGGCCTATA 59.475 41.667 0.00 0.00 42.56 1.31
67 68 3.323691 TCATGTGTATAGCAACGGCCTAT 59.676 43.478 0.00 0.00 42.56 2.57
68 69 2.696187 TCATGTGTATAGCAACGGCCTA 59.304 45.455 0.00 0.00 42.56 3.93
69 70 1.484653 TCATGTGTATAGCAACGGCCT 59.515 47.619 0.00 0.00 42.56 5.19
70 71 1.948104 TCATGTGTATAGCAACGGCC 58.052 50.000 0.00 0.00 42.56 6.13
71 72 2.872245 ACATCATGTGTATAGCAACGGC 59.128 45.455 0.00 0.00 39.91 5.68
72 73 4.119136 TGACATCATGTGTATAGCAACGG 58.881 43.478 0.00 0.00 42.36 4.44
73 74 5.673029 CATGACATCATGTGTATAGCAACG 58.327 41.667 12.83 0.00 46.40 4.10
88 89 4.083164 TCCATAAATGATGCGCATGACATC 60.083 41.667 30.76 14.87 43.46 3.06
89 90 3.822167 TCCATAAATGATGCGCATGACAT 59.178 39.130 30.76 22.41 37.28 3.06
90 91 3.003585 GTCCATAAATGATGCGCATGACA 59.996 43.478 30.76 21.04 37.28 3.58
91 92 3.558505 GTCCATAAATGATGCGCATGAC 58.441 45.455 30.76 21.12 37.28 3.06
92 93 2.223845 CGTCCATAAATGATGCGCATGA 59.776 45.455 30.76 22.10 37.28 3.07
93 94 2.223845 TCGTCCATAAATGATGCGCATG 59.776 45.455 30.76 13.20 37.28 4.06
94 95 2.493035 TCGTCCATAAATGATGCGCAT 58.507 42.857 25.66 25.66 39.43 4.73
95 96 1.946745 TCGTCCATAAATGATGCGCA 58.053 45.000 14.96 14.96 33.79 6.09
96 97 2.224079 ACATCGTCCATAAATGATGCGC 59.776 45.455 0.00 0.00 43.50 6.09
97 98 4.213674 CAACATCGTCCATAAATGATGCG 58.786 43.478 6.10 0.00 43.50 4.73
98 99 3.976942 GCAACATCGTCCATAAATGATGC 59.023 43.478 6.10 1.91 43.50 3.91
99 100 5.428496 AGCAACATCGTCCATAAATGATG 57.572 39.130 4.89 4.89 44.66 3.07
100 101 7.445096 TGATTAGCAACATCGTCCATAAATGAT 59.555 33.333 0.00 0.00 0.00 2.45
101 102 6.765512 TGATTAGCAACATCGTCCATAAATGA 59.234 34.615 0.00 0.00 0.00 2.57
102 103 6.958255 TGATTAGCAACATCGTCCATAAATG 58.042 36.000 0.00 0.00 0.00 2.32
103 104 7.566760 TTGATTAGCAACATCGTCCATAAAT 57.433 32.000 0.00 0.00 0.00 1.40
104 105 6.993786 TTGATTAGCAACATCGTCCATAAA 57.006 33.333 0.00 0.00 0.00 1.40
105 106 6.183360 GGTTTGATTAGCAACATCGTCCATAA 60.183 38.462 0.00 0.00 35.91 1.90
106 107 5.295787 GGTTTGATTAGCAACATCGTCCATA 59.704 40.000 0.00 0.00 35.91 2.74
107 108 4.096382 GGTTTGATTAGCAACATCGTCCAT 59.904 41.667 0.00 0.00 35.91 3.41
108 109 3.438781 GGTTTGATTAGCAACATCGTCCA 59.561 43.478 0.00 0.00 35.91 4.02
109 110 3.485216 CGGTTTGATTAGCAACATCGTCC 60.485 47.826 0.00 0.00 35.91 4.79
110 111 3.124636 ACGGTTTGATTAGCAACATCGTC 59.875 43.478 0.00 0.00 35.91 4.20
111 112 3.071479 ACGGTTTGATTAGCAACATCGT 58.929 40.909 0.00 0.00 35.91 3.73
112 113 3.740044 ACGGTTTGATTAGCAACATCG 57.260 42.857 0.00 0.00 35.91 3.84
113 114 4.165779 CCAACGGTTTGATTAGCAACATC 58.834 43.478 0.00 0.00 35.91 3.06
114 115 3.572255 ACCAACGGTTTGATTAGCAACAT 59.428 39.130 0.00 0.00 35.91 2.71
115 116 2.952978 ACCAACGGTTTGATTAGCAACA 59.047 40.909 0.00 0.00 35.91 3.33
116 117 3.305110 CACCAACGGTTTGATTAGCAAC 58.695 45.455 0.00 0.00 35.91 4.17
117 118 2.294791 CCACCAACGGTTTGATTAGCAA 59.705 45.455 0.00 0.00 34.24 3.91
118 119 1.883275 CCACCAACGGTTTGATTAGCA 59.117 47.619 0.00 0.00 34.24 3.49
119 120 2.095415 GTCCACCAACGGTTTGATTAGC 60.095 50.000 0.00 0.00 34.24 3.09
120 121 2.158841 CGTCCACCAACGGTTTGATTAG 59.841 50.000 0.00 0.00 38.96 1.73
121 122 2.144730 CGTCCACCAACGGTTTGATTA 58.855 47.619 0.00 0.00 38.96 1.75
122 123 0.948678 CGTCCACCAACGGTTTGATT 59.051 50.000 0.00 0.00 38.96 2.57
123 124 1.512156 GCGTCCACCAACGGTTTGAT 61.512 55.000 0.00 0.00 42.81 2.57
124 125 2.181521 GCGTCCACCAACGGTTTGA 61.182 57.895 0.00 0.00 42.81 2.69
125 126 2.330041 GCGTCCACCAACGGTTTG 59.670 61.111 0.00 0.00 42.81 2.93
126 127 2.903350 GGCGTCCACCAACGGTTT 60.903 61.111 0.00 0.00 42.81 3.27
130 131 4.953868 TCACGGCGTCCACCAACG 62.954 66.667 10.85 0.00 45.31 4.10
131 132 2.781595 ATCTCACGGCGTCCACCAAC 62.782 60.000 10.85 0.00 0.00 3.77
132 133 2.107041 AATCTCACGGCGTCCACCAA 62.107 55.000 10.85 0.00 0.00 3.67
133 134 2.107041 AAATCTCACGGCGTCCACCA 62.107 55.000 10.85 0.00 0.00 4.17
134 135 0.953960 AAAATCTCACGGCGTCCACC 60.954 55.000 10.85 0.00 0.00 4.61
135 136 0.165944 CAAAATCTCACGGCGTCCAC 59.834 55.000 10.85 0.00 0.00 4.02
136 137 1.573829 GCAAAATCTCACGGCGTCCA 61.574 55.000 10.85 0.00 0.00 4.02
137 138 1.134694 GCAAAATCTCACGGCGTCC 59.865 57.895 10.85 0.00 0.00 4.79
138 139 0.447801 ATGCAAAATCTCACGGCGTC 59.552 50.000 10.85 0.00 0.00 5.19
139 140 0.447801 GATGCAAAATCTCACGGCGT 59.552 50.000 6.77 6.77 0.00 5.68
140 141 0.587242 CGATGCAAAATCTCACGGCG 60.587 55.000 4.80 4.80 0.00 6.46
141 142 0.447801 ACGATGCAAAATCTCACGGC 59.552 50.000 0.00 0.00 0.00 5.68
142 143 2.476185 GGAACGATGCAAAATCTCACGG 60.476 50.000 0.00 0.00 0.00 4.94
143 144 2.416547 AGGAACGATGCAAAATCTCACG 59.583 45.455 0.00 0.00 0.00 4.35
144 145 5.545658 TTAGGAACGATGCAAAATCTCAC 57.454 39.130 0.00 0.00 0.00 3.51
145 146 6.757897 ATTTAGGAACGATGCAAAATCTCA 57.242 33.333 0.00 0.00 0.00 3.27
146 147 6.473455 CCAATTTAGGAACGATGCAAAATCTC 59.527 38.462 0.00 0.00 0.00 2.75
147 148 6.071391 ACCAATTTAGGAACGATGCAAAATCT 60.071 34.615 0.00 0.00 0.00 2.40
148 149 6.034898 CACCAATTTAGGAACGATGCAAAATC 59.965 38.462 0.00 0.00 0.00 2.17
149 150 5.868801 CACCAATTTAGGAACGATGCAAAAT 59.131 36.000 0.00 0.00 0.00 1.82
150 151 5.010112 TCACCAATTTAGGAACGATGCAAAA 59.990 36.000 0.00 0.00 0.00 2.44
151 152 4.520874 TCACCAATTTAGGAACGATGCAAA 59.479 37.500 0.00 0.00 0.00 3.68
152 153 4.075682 TCACCAATTTAGGAACGATGCAA 58.924 39.130 0.00 0.00 0.00 4.08
153 154 3.680490 TCACCAATTTAGGAACGATGCA 58.320 40.909 0.00 0.00 0.00 3.96
154 155 3.065371 CCTCACCAATTTAGGAACGATGC 59.935 47.826 0.00 0.00 31.64 3.91
155 156 3.065371 GCCTCACCAATTTAGGAACGATG 59.935 47.826 0.00 0.00 31.64 3.84
156 157 3.279434 GCCTCACCAATTTAGGAACGAT 58.721 45.455 0.00 0.00 31.64 3.73
157 158 2.039216 TGCCTCACCAATTTAGGAACGA 59.961 45.455 0.00 0.00 31.64 3.85
158 159 2.432444 TGCCTCACCAATTTAGGAACG 58.568 47.619 0.00 0.00 31.64 3.95
159 160 3.763897 ACATGCCTCACCAATTTAGGAAC 59.236 43.478 0.00 0.00 31.64 3.62
160 161 4.016444 GACATGCCTCACCAATTTAGGAA 58.984 43.478 0.00 0.00 31.64 3.36
161 162 3.010027 TGACATGCCTCACCAATTTAGGA 59.990 43.478 0.00 0.00 31.64 2.94
162 163 3.129287 GTGACATGCCTCACCAATTTAGG 59.871 47.826 5.37 0.00 35.44 2.69
163 164 3.181507 CGTGACATGCCTCACCAATTTAG 60.182 47.826 10.04 0.00 37.83 1.85
164 165 2.746904 CGTGACATGCCTCACCAATTTA 59.253 45.455 10.04 0.00 37.83 1.40
165 166 1.541147 CGTGACATGCCTCACCAATTT 59.459 47.619 10.04 0.00 37.83 1.82
166 167 1.167851 CGTGACATGCCTCACCAATT 58.832 50.000 10.04 0.00 37.83 2.32
167 168 1.308069 GCGTGACATGCCTCACCAAT 61.308 55.000 8.55 0.00 37.83 3.16
168 169 1.965930 GCGTGACATGCCTCACCAA 60.966 57.895 8.55 0.00 37.83 3.67
169 170 2.358615 GCGTGACATGCCTCACCA 60.359 61.111 8.55 0.00 37.83 4.17
170 171 3.490759 CGCGTGACATGCCTCACC 61.491 66.667 13.97 3.84 37.83 4.02
171 172 4.152625 GCGCGTGACATGCCTCAC 62.153 66.667 13.97 6.42 37.75 3.51
172 173 4.678499 TGCGCGTGACATGCCTCA 62.678 61.111 13.97 9.26 0.00 3.86
173 174 2.839324 CTTTGCGCGTGACATGCCTC 62.839 60.000 13.97 6.81 0.00 4.70
174 175 2.969806 CTTTGCGCGTGACATGCCT 61.970 57.895 13.97 0.00 0.00 4.75
175 176 1.906994 TACTTTGCGCGTGACATGCC 61.907 55.000 13.97 7.50 0.00 4.40
176 177 0.519175 CTACTTTGCGCGTGACATGC 60.519 55.000 8.43 9.73 0.00 4.06
177 178 0.790207 ACTACTTTGCGCGTGACATG 59.210 50.000 8.43 0.00 0.00 3.21
178 179 1.508632 AACTACTTTGCGCGTGACAT 58.491 45.000 8.43 0.00 0.00 3.06
179 180 1.259507 GAAACTACTTTGCGCGTGACA 59.740 47.619 8.43 0.00 0.00 3.58
180 181 1.259507 TGAAACTACTTTGCGCGTGAC 59.740 47.619 8.43 0.00 0.00 3.67
181 182 1.573026 TGAAACTACTTTGCGCGTGA 58.427 45.000 8.43 0.00 0.00 4.35
182 183 2.376915 TTGAAACTACTTTGCGCGTG 57.623 45.000 8.43 0.00 0.00 5.34
183 184 2.096174 TGTTTGAAACTACTTTGCGCGT 59.904 40.909 8.43 0.00 0.00 6.01
184 185 2.462565 GTGTTTGAAACTACTTTGCGCG 59.537 45.455 9.69 0.00 0.00 6.86
185 186 3.430931 TGTGTTTGAAACTACTTTGCGC 58.569 40.909 9.69 0.00 0.00 6.09
186 187 5.034152 ACATGTGTTTGAAACTACTTTGCG 58.966 37.500 9.69 0.00 0.00 4.85
187 188 9.840427 ATATACATGTGTTTGAAACTACTTTGC 57.160 29.630 9.11 0.00 0.00 3.68
211 212 9.337396 AGTCACAAAGTCTCACAATTGTAAATA 57.663 29.630 11.53 0.00 34.45 1.40
212 213 8.225603 AGTCACAAAGTCTCACAATTGTAAAT 57.774 30.769 11.53 0.00 34.45 1.40
213 214 7.624360 AGTCACAAAGTCTCACAATTGTAAA 57.376 32.000 11.53 1.62 34.45 2.01
214 215 7.624360 AAGTCACAAAGTCTCACAATTGTAA 57.376 32.000 11.53 0.00 34.45 2.41
215 216 7.624360 AAAGTCACAAAGTCTCACAATTGTA 57.376 32.000 11.53 0.00 34.45 2.41
216 217 6.515272 AAAGTCACAAAGTCTCACAATTGT 57.485 33.333 4.92 4.92 36.49 2.71
217 218 7.645340 CCTTAAAGTCACAAAGTCTCACAATTG 59.355 37.037 3.24 3.24 0.00 2.32
218 219 7.339466 ACCTTAAAGTCACAAAGTCTCACAATT 59.661 33.333 0.00 0.00 0.00 2.32
219 220 6.828785 ACCTTAAAGTCACAAAGTCTCACAAT 59.171 34.615 0.00 0.00 0.00 2.71
220 221 6.177610 ACCTTAAAGTCACAAAGTCTCACAA 58.822 36.000 0.00 0.00 0.00 3.33
221 222 5.741011 ACCTTAAAGTCACAAAGTCTCACA 58.259 37.500 0.00 0.00 0.00 3.58
222 223 7.781548 TTACCTTAAAGTCACAAAGTCTCAC 57.218 36.000 0.00 0.00 0.00 3.51
223 224 7.444183 CCATTACCTTAAAGTCACAAAGTCTCA 59.556 37.037 0.00 0.00 0.00 3.27
224 225 7.660208 TCCATTACCTTAAAGTCACAAAGTCTC 59.340 37.037 0.00 0.00 0.00 3.36
225 226 7.514721 TCCATTACCTTAAAGTCACAAAGTCT 58.485 34.615 0.00 0.00 0.00 3.24
226 227 7.739498 TCCATTACCTTAAAGTCACAAAGTC 57.261 36.000 0.00 0.00 0.00 3.01
227 228 8.706322 AATCCATTACCTTAAAGTCACAAAGT 57.294 30.769 0.00 0.00 0.00 2.66
228 229 7.962918 CGAATCCATTACCTTAAAGTCACAAAG 59.037 37.037 0.00 0.00 0.00 2.77
229 230 7.094549 CCGAATCCATTACCTTAAAGTCACAAA 60.095 37.037 0.00 0.00 0.00 2.83
230 231 6.373216 CCGAATCCATTACCTTAAAGTCACAA 59.627 38.462 0.00 0.00 0.00 3.33
231 232 5.878116 CCGAATCCATTACCTTAAAGTCACA 59.122 40.000 0.00 0.00 0.00 3.58
232 233 5.878669 ACCGAATCCATTACCTTAAAGTCAC 59.121 40.000 0.00 0.00 0.00 3.67
233 234 6.057321 ACCGAATCCATTACCTTAAAGTCA 57.943 37.500 0.00 0.00 0.00 3.41
234 235 6.704937 CCTACCGAATCCATTACCTTAAAGTC 59.295 42.308 0.00 0.00 0.00 3.01
235 236 6.408891 CCCTACCGAATCCATTACCTTAAAGT 60.409 42.308 0.00 0.00 0.00 2.66
236 237 5.995897 CCCTACCGAATCCATTACCTTAAAG 59.004 44.000 0.00 0.00 0.00 1.85
237 238 5.666718 TCCCTACCGAATCCATTACCTTAAA 59.333 40.000 0.00 0.00 0.00 1.52
238 239 5.218179 TCCCTACCGAATCCATTACCTTAA 58.782 41.667 0.00 0.00 0.00 1.85
239 240 4.818447 TCCCTACCGAATCCATTACCTTA 58.182 43.478 0.00 0.00 0.00 2.69
240 241 3.660959 TCCCTACCGAATCCATTACCTT 58.339 45.455 0.00 0.00 0.00 3.50
241 242 3.339713 TCCCTACCGAATCCATTACCT 57.660 47.619 0.00 0.00 0.00 3.08
242 243 3.390311 AGTTCCCTACCGAATCCATTACC 59.610 47.826 0.00 0.00 0.00 2.85
243 244 4.100498 TCAGTTCCCTACCGAATCCATTAC 59.900 45.833 0.00 0.00 0.00 1.89
244 245 4.291792 TCAGTTCCCTACCGAATCCATTA 58.708 43.478 0.00 0.00 0.00 1.90
245 246 3.112263 TCAGTTCCCTACCGAATCCATT 58.888 45.455 0.00 0.00 0.00 3.16
246 247 2.700897 CTCAGTTCCCTACCGAATCCAT 59.299 50.000 0.00 0.00 0.00 3.41
247 248 2.108168 CTCAGTTCCCTACCGAATCCA 58.892 52.381 0.00 0.00 0.00 3.41
248 249 2.108970 ACTCAGTTCCCTACCGAATCC 58.891 52.381 0.00 0.00 0.00 3.01
249 250 3.952967 ACTACTCAGTTCCCTACCGAATC 59.047 47.826 0.00 0.00 0.00 2.52
250 251 3.952967 GACTACTCAGTTCCCTACCGAAT 59.047 47.826 0.00 0.00 34.21 3.34
251 252 3.245016 TGACTACTCAGTTCCCTACCGAA 60.245 47.826 0.00 0.00 34.21 4.30
252 253 2.306805 TGACTACTCAGTTCCCTACCGA 59.693 50.000 0.00 0.00 34.21 4.69
253 254 2.719739 TGACTACTCAGTTCCCTACCG 58.280 52.381 0.00 0.00 34.21 4.02
254 255 4.342359 TCTTGACTACTCAGTTCCCTACC 58.658 47.826 0.00 0.00 34.21 3.18
255 256 5.979288 TTCTTGACTACTCAGTTCCCTAC 57.021 43.478 0.00 0.00 34.21 3.18
256 257 7.894364 ACTATTTCTTGACTACTCAGTTCCCTA 59.106 37.037 0.00 0.00 34.21 3.53
257 258 6.726764 ACTATTTCTTGACTACTCAGTTCCCT 59.273 38.462 0.00 0.00 34.21 4.20
258 259 6.814146 CACTATTTCTTGACTACTCAGTTCCC 59.186 42.308 0.00 0.00 34.21 3.97
259 260 6.814146 CCACTATTTCTTGACTACTCAGTTCC 59.186 42.308 0.00 0.00 34.21 3.62
260 261 7.379750 ACCACTATTTCTTGACTACTCAGTTC 58.620 38.462 0.00 0.00 34.21 3.01
261 262 7.015292 TGACCACTATTTCTTGACTACTCAGTT 59.985 37.037 0.00 0.00 34.21 3.16
262 263 6.493802 TGACCACTATTTCTTGACTACTCAGT 59.506 38.462 0.00 0.00 37.87 3.41
263 264 6.925211 TGACCACTATTTCTTGACTACTCAG 58.075 40.000 0.00 0.00 0.00 3.35
264 265 6.719829 TCTGACCACTATTTCTTGACTACTCA 59.280 38.462 0.00 0.00 0.00 3.41
265 266 7.094118 ACTCTGACCACTATTTCTTGACTACTC 60.094 40.741 0.00 0.00 0.00 2.59
266 267 6.722129 ACTCTGACCACTATTTCTTGACTACT 59.278 38.462 0.00 0.00 0.00 2.57
267 268 6.926313 ACTCTGACCACTATTTCTTGACTAC 58.074 40.000 0.00 0.00 0.00 2.73
268 269 7.540474 AACTCTGACCACTATTTCTTGACTA 57.460 36.000 0.00 0.00 0.00 2.59
269 270 6.426646 AACTCTGACCACTATTTCTTGACT 57.573 37.500 0.00 0.00 0.00 3.41
270 271 5.346281 CGAACTCTGACCACTATTTCTTGAC 59.654 44.000 0.00 0.00 0.00 3.18
271 272 5.470368 CGAACTCTGACCACTATTTCTTGA 58.530 41.667 0.00 0.00 0.00 3.02
272 273 4.627467 CCGAACTCTGACCACTATTTCTTG 59.373 45.833 0.00 0.00 0.00 3.02
273 274 4.822026 CCGAACTCTGACCACTATTTCTT 58.178 43.478 0.00 0.00 0.00 2.52
274 275 3.368531 GCCGAACTCTGACCACTATTTCT 60.369 47.826 0.00 0.00 0.00 2.52
275 276 2.930682 GCCGAACTCTGACCACTATTTC 59.069 50.000 0.00 0.00 0.00 2.17
276 277 2.354805 GGCCGAACTCTGACCACTATTT 60.355 50.000 0.00 0.00 0.00 1.40
277 278 1.207329 GGCCGAACTCTGACCACTATT 59.793 52.381 0.00 0.00 0.00 1.73
278 279 0.824759 GGCCGAACTCTGACCACTAT 59.175 55.000 0.00 0.00 0.00 2.12
279 280 0.251653 AGGCCGAACTCTGACCACTA 60.252 55.000 0.00 0.00 0.00 2.74
280 281 1.534235 AGGCCGAACTCTGACCACT 60.534 57.895 0.00 0.00 0.00 4.00
281 282 1.374758 CAGGCCGAACTCTGACCAC 60.375 63.158 0.00 0.00 33.11 4.16
282 283 2.583441 CCAGGCCGAACTCTGACCA 61.583 63.158 0.00 0.00 33.11 4.02
283 284 2.113243 AACCAGGCCGAACTCTGACC 62.113 60.000 0.00 0.00 33.11 4.02
284 285 0.951040 CAACCAGGCCGAACTCTGAC 60.951 60.000 0.00 0.00 33.11 3.51
285 286 1.118965 TCAACCAGGCCGAACTCTGA 61.119 55.000 0.00 0.00 33.11 3.27
286 287 0.671781 CTCAACCAGGCCGAACTCTG 60.672 60.000 0.00 0.00 0.00 3.35
287 288 1.674057 CTCAACCAGGCCGAACTCT 59.326 57.895 0.00 0.00 0.00 3.24
288 289 2.035442 GCTCAACCAGGCCGAACTC 61.035 63.158 0.00 0.00 0.00 3.01
289 290 2.032681 GCTCAACCAGGCCGAACT 59.967 61.111 0.00 0.00 0.00 3.01
290 291 3.056328 GGCTCAACCAGGCCGAAC 61.056 66.667 0.00 0.00 42.12 3.95
294 295 3.056328 GTTCGGCTCAACCAGGCC 61.056 66.667 0.00 0.00 45.29 5.19
295 296 3.056328 GGTTCGGCTCAACCAGGC 61.056 66.667 11.26 0.00 44.79 4.85
381 421 3.518998 CGATGTCGTCCGGGAGCT 61.519 66.667 0.00 0.00 34.11 4.09
595 644 4.101448 GGCGAGGCTGTGATGGGT 62.101 66.667 0.00 0.00 0.00 4.51
600 649 2.604686 AGAAGGGCGAGGCTGTGA 60.605 61.111 0.00 0.00 0.00 3.58
604 653 4.406763 AGGGAGAAGGGCGAGGCT 62.407 66.667 0.00 0.00 0.00 4.58
878 946 2.258591 GTCTGCGTCAGCCGAGAA 59.741 61.111 2.45 0.00 44.33 2.87
912 986 3.737047 GCCAATCTCCGACGAATACAAGA 60.737 47.826 0.00 0.00 0.00 3.02
919 993 0.320374 AAGTGCCAATCTCCGACGAA 59.680 50.000 0.00 0.00 0.00 3.85
937 1011 1.301623 CGCTGGAATGGTACCCCAA 59.698 57.895 10.07 0.00 46.04 4.12
943 1017 4.615901 CAGCACGCTGGAATGGTA 57.384 55.556 11.29 0.00 40.17 3.25
993 1120 0.044702 ACTCCAGGATCATCCCACCA 59.955 55.000 0.00 0.00 37.19 4.17
1056 1183 1.037493 TGTCACTGCTGTAACCGTCT 58.963 50.000 0.00 0.00 0.00 4.18
1066 1193 5.277828 GGTTAAATCTTTCGTTGTCACTGCT 60.278 40.000 0.00 0.00 0.00 4.24
1216 1361 5.982516 CGACAACAATTGGGAGAAAATCAAA 59.017 36.000 10.83 0.00 34.12 2.69
1217 1362 5.300539 TCGACAACAATTGGGAGAAAATCAA 59.699 36.000 10.83 0.00 34.12 2.57
1219 1364 5.371115 TCGACAACAATTGGGAGAAAATC 57.629 39.130 10.83 0.00 34.12 2.17
1220 1371 5.982890 ATCGACAACAATTGGGAGAAAAT 57.017 34.783 10.83 0.00 34.12 1.82
1230 1387 8.702163 AAAGACTTTTTGAATCGACAACAATT 57.298 26.923 0.00 0.00 0.00 2.32
1231 1388 8.190784 AGAAAGACTTTTTGAATCGACAACAAT 58.809 29.630 1.12 0.00 0.00 2.71
1232 1389 7.535139 AGAAAGACTTTTTGAATCGACAACAA 58.465 30.769 1.12 0.00 0.00 2.83
1234 1391 6.633234 GGAGAAAGACTTTTTGAATCGACAAC 59.367 38.462 1.12 0.00 0.00 3.32
1243 1400 5.125417 CCAACACTGGAGAAAGACTTTTTGA 59.875 40.000 1.12 0.00 46.92 2.69
1250 1407 1.202818 AGCCCAACACTGGAGAAAGAC 60.203 52.381 0.00 0.00 46.92 3.01
1252 1409 1.986882 AAGCCCAACACTGGAGAAAG 58.013 50.000 0.00 0.00 46.92 2.62
1253 1410 2.031120 CAAAGCCCAACACTGGAGAAA 58.969 47.619 0.00 0.00 46.92 2.52
1255 1412 0.823356 GCAAAGCCCAACACTGGAGA 60.823 55.000 0.00 0.00 46.92 3.71
1300 1457 7.703058 TCATGAAGAGACTATACACAGTTGA 57.297 36.000 0.00 0.00 0.00 3.18
1301 1458 7.378194 CGATCATGAAGAGACTATACACAGTTG 59.622 40.741 0.00 0.00 0.00 3.16
1333 1490 0.476771 TTTTTCCCCTGCTCCGACTT 59.523 50.000 0.00 0.00 0.00 3.01
1346 1503 2.610374 TGACTAGCACACACGTTTTTCC 59.390 45.455 0.00 0.00 0.00 3.13
1353 1510 0.390340 AGCCATGACTAGCACACACG 60.390 55.000 0.00 0.00 0.00 4.49
1380 1537 4.070716 AGAAGCTGACAACTGGAATCAAG 58.929 43.478 0.00 0.00 0.00 3.02
1498 1658 5.104360 CCATTCTACTGATTTCTCCTCCCAA 60.104 44.000 0.00 0.00 0.00 4.12
1514 1674 2.472909 GCACCTGCGCCCATTCTAC 61.473 63.158 4.18 0.00 0.00 2.59
1561 1721 0.512952 CGTTGGCAAAGTCCTTCTCG 59.487 55.000 0.00 0.00 0.00 4.04
1585 1745 0.392729 GAGCATGTCTGAAGCAGCCT 60.393 55.000 0.00 0.00 0.00 4.58
1587 1747 1.008329 GAGAGCATGTCTGAAGCAGC 58.992 55.000 0.00 0.00 34.71 5.25
1607 1767 4.019231 GGAGTAGAACCCAAACCTGATCTT 60.019 45.833 0.00 0.00 0.00 2.40
1665 1825 7.170998 GCAAACTATCCATAAGTTACGCTACAT 59.829 37.037 0.00 0.00 36.17 2.29
1677 1837 3.118702 TCGTTCCGGCAAACTATCCATAA 60.119 43.478 0.00 0.00 0.00 1.90
1734 1894 4.536765 AGGCCTTTTCCTAATGGTGTATG 58.463 43.478 0.00 0.00 33.95 2.39
1735 1895 4.881157 AGGCCTTTTCCTAATGGTGTAT 57.119 40.909 0.00 0.00 33.95 2.29
1741 1901 5.520376 CCATTGTAGGCCTTTTCCTAATG 57.480 43.478 12.58 12.52 40.18 1.90
1801 1962 1.484653 AGTGGCGTGATACTAATGGCA 59.515 47.619 0.00 0.00 36.83 4.92
1906 2080 3.632333 AGTATAGCAGACACTAGTGGCA 58.368 45.455 30.11 10.34 42.32 4.92
1972 2159 9.739276 TGAAATAGTGACCTGACATTAAGAAAT 57.261 29.630 0.00 0.00 0.00 2.17
2057 2249 7.728847 TGTATATATGATGGAACTTGTGTGC 57.271 36.000 0.00 0.00 0.00 4.57
2201 2463 4.039488 TGCATGAATGGAGTGCTTCTTTTT 59.961 37.500 0.00 0.00 39.52 1.94
2218 2480 1.825090 ATTCACGGAAGCTTGCATGA 58.175 45.000 12.93 12.93 0.00 3.07
2347 2642 8.581253 AACTTGGAGCTTATATGCTTAGTTTT 57.419 30.769 13.82 3.97 44.17 2.43
2480 2775 7.762382 AGCTCCAAAATAACTTATGTTAGCAC 58.238 34.615 7.24 0.00 41.33 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.