Multiple sequence alignment - TraesCS5B01G505300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G505300 chr5B 100.000 4802 0 0 1 4802 671125144 671129945 0.000000e+00 8868.0
1 TraesCS5B01G505300 chr5B 92.173 626 42 6 1 623 411668317 411667696 0.000000e+00 878.0
2 TraesCS5B01G505300 chr5B 91.038 636 39 13 1 624 289261955 289261326 0.000000e+00 843.0
3 TraesCS5B01G505300 chr5B 92.495 493 35 2 4311 4802 546417617 546418108 0.000000e+00 704.0
4 TraesCS5B01G505300 chr5D 96.217 1586 42 10 2733 4315 531895292 531896862 0.000000e+00 2580.0
5 TraesCS5B01G505300 chr5D 95.204 980 34 6 789 1767 531892360 531893327 0.000000e+00 1537.0
6 TraesCS5B01G505300 chr5D 86.486 851 63 17 2713 3534 531894463 531895290 0.000000e+00 887.0
7 TraesCS5B01G505300 chr5D 84.514 381 40 13 1701 2067 531893357 531893732 4.570000e-95 359.0
8 TraesCS5B01G505300 chr5D 85.401 274 27 8 2359 2631 531894203 531894464 6.120000e-69 272.0
9 TraesCS5B01G505300 chr4A 94.171 1218 58 7 828 2043 640238013 640236807 0.000000e+00 1844.0
10 TraesCS5B01G505300 chr4A 90.848 1344 95 20 2664 3994 640235850 640234522 0.000000e+00 1775.0
11 TraesCS5B01G505300 chr4A 96.044 455 15 3 2214 2667 640236516 640236064 0.000000e+00 737.0
12 TraesCS5B01G505300 chr4A 92.480 492 36 1 4311 4802 17397330 17397820 0.000000e+00 702.0
13 TraesCS5B01G505300 chr4A 98.039 102 1 1 2051 2152 640236728 640236628 4.940000e-40 176.0
14 TraesCS5B01G505300 chr4A 88.372 86 9 1 2630 2714 544057440 544057355 8.500000e-18 102.0
15 TraesCS5B01G505300 chr2B 92.800 625 38 6 1 621 390359980 390360601 0.000000e+00 898.0
16 TraesCS5B01G505300 chr2B 89.623 636 44 14 1 620 691001915 691002544 0.000000e+00 789.0
17 TraesCS5B01G505300 chr2A 92.013 626 41 8 1 620 43468226 43468848 0.000000e+00 870.0
18 TraesCS5B01G505300 chr2A 94.382 89 5 0 4227 4315 707998354 707998442 2.330000e-28 137.0
19 TraesCS5B01G505300 chr3B 91.680 625 43 7 1 620 90123948 90124568 0.000000e+00 857.0
20 TraesCS5B01G505300 chr3B 90.287 628 44 13 1 620 754973259 754972641 0.000000e+00 806.0
21 TraesCS5B01G505300 chr3B 92.480 492 36 1 4311 4802 378693403 378692913 0.000000e+00 702.0
22 TraesCS5B01G505300 chr3B 93.478 92 6 0 4227 4318 378693547 378693456 2.330000e-28 137.0
23 TraesCS5B01G505300 chr3B 88.372 86 7 3 2631 2714 740890330 740890246 3.060000e-17 100.0
24 TraesCS5B01G505300 chr1B 91.080 639 34 20 1 622 558520841 558521473 0.000000e+00 843.0
25 TraesCS5B01G505300 chr1B 90.461 629 44 14 1 621 40817930 40818550 0.000000e+00 815.0
26 TraesCS5B01G505300 chrUn 92.886 492 34 1 4311 4802 46153889 46154379 0.000000e+00 713.0
27 TraesCS5B01G505300 chrUn 94.382 89 5 0 4227 4315 46153745 46153833 2.330000e-28 137.0
28 TraesCS5B01G505300 chrUn 94.545 55 3 0 2630 2684 48473122 48473176 8.560000e-13 86.1
29 TraesCS5B01G505300 chr7A 92.886 492 34 1 4311 4802 26771480 26770990 0.000000e+00 713.0
30 TraesCS5B01G505300 chr1D 92.886 492 34 1 4311 4802 482919888 482919398 0.000000e+00 713.0
31 TraesCS5B01G505300 chr1D 93.258 89 6 0 4227 4315 482920032 482919944 1.080000e-26 132.0
32 TraesCS5B01G505300 chr3A 92.668 491 36 0 4312 4802 719287616 719287126 0.000000e+00 708.0
33 TraesCS5B01G505300 chr3A 94.382 89 5 0 4227 4315 455798997 455799085 2.330000e-28 137.0
34 TraesCS5B01G505300 chr4D 92.480 492 36 1 4311 4802 498966739 498967229 0.000000e+00 702.0
35 TraesCS5B01G505300 chr4D 94.382 89 5 0 4227 4315 498966595 498966683 2.330000e-28 137.0
36 TraesCS5B01G505300 chr4D 88.000 100 10 2 2625 2722 98453264 98453165 3.040000e-22 117.0
37 TraesCS5B01G505300 chr3D 91.886 493 38 2 4311 4802 20901491 20901982 0.000000e+00 688.0
38 TraesCS5B01G505300 chr6B 93.258 89 6 0 4227 4315 428429 428517 1.080000e-26 132.0
39 TraesCS5B01G505300 chr6A 93.258 89 6 0 4227 4315 558097808 558097896 1.080000e-26 132.0
40 TraesCS5B01G505300 chr2D 90.805 87 7 1 2629 2714 406941740 406941826 1.090000e-21 115.0
41 TraesCS5B01G505300 chr2D 90.476 63 6 0 2622 2684 535105561 535105623 3.080000e-12 84.2
42 TraesCS5B01G505300 chr2D 79.389 131 11 10 2600 2714 535105699 535105569 1.430000e-10 78.7
43 TraesCS5B01G505300 chr2D 94.737 38 1 1 739 776 638395737 638395701 1.870000e-04 58.4
44 TraesCS5B01G505300 chr6D 84.444 90 11 3 2626 2714 413078327 413078240 8.560000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G505300 chr5B 671125144 671129945 4801 False 8868.0 8868 100.0000 1 4802 1 chr5B.!!$F2 4801
1 TraesCS5B01G505300 chr5B 411667696 411668317 621 True 878.0 878 92.1730 1 623 1 chr5B.!!$R2 622
2 TraesCS5B01G505300 chr5B 289261326 289261955 629 True 843.0 843 91.0380 1 624 1 chr5B.!!$R1 623
3 TraesCS5B01G505300 chr5D 531892360 531896862 4502 False 1127.0 2580 89.5644 789 4315 5 chr5D.!!$F1 3526
4 TraesCS5B01G505300 chr4A 640234522 640238013 3491 True 1133.0 1844 94.7755 828 3994 4 chr4A.!!$R2 3166
5 TraesCS5B01G505300 chr2B 390359980 390360601 621 False 898.0 898 92.8000 1 621 1 chr2B.!!$F1 620
6 TraesCS5B01G505300 chr2B 691001915 691002544 629 False 789.0 789 89.6230 1 620 1 chr2B.!!$F2 619
7 TraesCS5B01G505300 chr2A 43468226 43468848 622 False 870.0 870 92.0130 1 620 1 chr2A.!!$F1 619
8 TraesCS5B01G505300 chr3B 90123948 90124568 620 False 857.0 857 91.6800 1 620 1 chr3B.!!$F1 619
9 TraesCS5B01G505300 chr3B 754972641 754973259 618 True 806.0 806 90.2870 1 620 1 chr3B.!!$R2 619
10 TraesCS5B01G505300 chr3B 378692913 378693547 634 True 419.5 702 92.9790 4227 4802 2 chr3B.!!$R3 575
11 TraesCS5B01G505300 chr1B 558520841 558521473 632 False 843.0 843 91.0800 1 622 1 chr1B.!!$F2 621
12 TraesCS5B01G505300 chr1B 40817930 40818550 620 False 815.0 815 90.4610 1 621 1 chr1B.!!$F1 620
13 TraesCS5B01G505300 chrUn 46153745 46154379 634 False 425.0 713 93.6340 4227 4802 2 chrUn.!!$F2 575
14 TraesCS5B01G505300 chr1D 482919398 482920032 634 True 422.5 713 93.0720 4227 4802 2 chr1D.!!$R1 575
15 TraesCS5B01G505300 chr4D 498966595 498967229 634 False 419.5 702 93.4310 4227 4802 2 chr4D.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 829 0.249741 CGGTTTTGACACGAGGGAGT 60.250 55.0 0.00 0.0 0.00 3.85 F
2157 2409 0.886563 GGTTTGCAGCTGCTGATCTT 59.113 50.0 36.61 0.0 42.66 2.40 F
2204 2726 0.104934 GGAGGGGATCAGGCCTAAGA 60.105 60.0 3.98 0.0 0.00 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2716 0.179000 AAGTCCGCATCTTAGGCCTG 59.821 55.000 17.99 0.00 0.00 4.85 R
3003 4573 0.235926 GTTTCTTGTGCACCGAGCTC 59.764 55.000 15.69 2.73 45.94 4.09 R
4203 5810 1.139853 GGAGAGGAGTTGCACCCTATG 59.860 57.143 1.35 0.00 31.84 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.757868 CCCTTGGAGTTGTTGTTGTTGA 59.242 45.455 0.00 0.00 0.00 3.18
67 68 2.549282 CGGGCGAAGTTGACAACG 59.451 61.111 12.54 2.62 36.23 4.10
292 295 1.553690 CGGAGGAGGTGGTGGTGATT 61.554 60.000 0.00 0.00 0.00 2.57
294 297 0.693049 GAGGAGGTGGTGGTGATTGT 59.307 55.000 0.00 0.00 0.00 2.71
350 357 2.434884 ACATGGCTCGGTCGCAAG 60.435 61.111 0.00 0.00 0.00 4.01
422 430 7.778853 TGTTACCATGTAAAGTAGTTTGGGAAA 59.221 33.333 5.77 0.00 29.18 3.13
443 451 1.347320 CGTAGAACCCTTTGTCTCGC 58.653 55.000 0.00 0.00 0.00 5.03
466 476 3.531538 CCGCGGTATATATTGAGGCAAT 58.468 45.455 19.50 0.00 37.80 3.56
521 554 1.195115 CAGGGGGAGATCGACAGAAA 58.805 55.000 0.00 0.00 0.00 2.52
540 574 5.576384 CAGAAAAGAAAGATCGACCAGAGAG 59.424 44.000 0.00 0.00 0.00 3.20
614 659 9.860393 ACCTCTCCTATCCCTATACAATAATTT 57.140 33.333 0.00 0.00 0.00 1.82
630 675 8.587952 ACAATAATTTTAACAACTCAAGCACC 57.412 30.769 0.00 0.00 0.00 5.01
631 676 8.421002 ACAATAATTTTAACAACTCAAGCACCT 58.579 29.630 0.00 0.00 0.00 4.00
632 677 9.260002 CAATAATTTTAACAACTCAAGCACCTT 57.740 29.630 0.00 0.00 0.00 3.50
633 678 8.816640 ATAATTTTAACAACTCAAGCACCTTG 57.183 30.769 0.00 0.00 42.25 3.61
634 679 5.652994 TTTTAACAACTCAAGCACCTTGT 57.347 34.783 5.03 0.00 41.66 3.16
635 680 5.652994 TTTAACAACTCAAGCACCTTGTT 57.347 34.783 5.03 0.00 41.66 2.83
636 681 5.652994 TTAACAACTCAAGCACCTTGTTT 57.347 34.783 5.03 0.00 41.66 2.83
637 682 4.535526 AACAACTCAAGCACCTTGTTTT 57.464 36.364 5.03 0.00 41.66 2.43
638 683 3.848726 ACAACTCAAGCACCTTGTTTTG 58.151 40.909 14.17 14.17 41.66 2.44
639 684 3.258123 ACAACTCAAGCACCTTGTTTTGT 59.742 39.130 14.99 14.99 41.66 2.83
640 685 3.508744 ACTCAAGCACCTTGTTTTGTG 57.491 42.857 5.03 0.00 41.66 3.33
641 686 3.088532 ACTCAAGCACCTTGTTTTGTGA 58.911 40.909 5.03 0.00 41.66 3.58
642 687 3.701040 ACTCAAGCACCTTGTTTTGTGAT 59.299 39.130 5.03 0.00 41.66 3.06
643 688 4.202050 ACTCAAGCACCTTGTTTTGTGATC 60.202 41.667 5.03 0.00 41.66 2.92
644 689 3.698539 TCAAGCACCTTGTTTTGTGATCA 59.301 39.130 0.00 0.00 41.66 2.92
645 690 3.715628 AGCACCTTGTTTTGTGATCAC 57.284 42.857 19.27 19.27 34.37 3.06
646 691 3.023119 AGCACCTTGTTTTGTGATCACA 58.977 40.909 24.56 24.56 39.98 3.58
647 692 6.134675 CAAGCACCTTGTTTTGTGATCACAA 61.135 40.000 32.36 32.36 41.28 3.33
648 693 7.557364 CAAGCACCTTGTTTTGTGATCACAAA 61.557 38.462 37.97 37.97 44.54 2.83
661 706 7.202016 TGTGATCACAAAAATGAGAAGGTAC 57.798 36.000 26.02 0.00 38.56 3.34
662 707 6.998074 TGTGATCACAAAAATGAGAAGGTACT 59.002 34.615 26.02 0.00 38.54 2.73
663 708 7.502226 TGTGATCACAAAAATGAGAAGGTACTT 59.498 33.333 26.02 0.00 45.78 2.24
680 725 7.195374 AGGTACTTGGTTTCAGCAATATAGA 57.805 36.000 0.00 0.00 34.84 1.98
681 726 7.806180 AGGTACTTGGTTTCAGCAATATAGAT 58.194 34.615 0.00 0.00 34.84 1.98
682 727 7.716998 AGGTACTTGGTTTCAGCAATATAGATG 59.283 37.037 0.00 0.00 34.84 2.90
683 728 7.499232 GGTACTTGGTTTCAGCAATATAGATGT 59.501 37.037 0.00 0.00 34.84 3.06
684 729 7.559590 ACTTGGTTTCAGCAATATAGATGTC 57.440 36.000 0.00 0.00 34.84 3.06
685 730 7.112122 ACTTGGTTTCAGCAATATAGATGTCA 58.888 34.615 0.00 0.00 34.84 3.58
686 731 6.925610 TGGTTTCAGCAATATAGATGTCAC 57.074 37.500 0.00 0.00 0.00 3.67
687 732 6.413892 TGGTTTCAGCAATATAGATGTCACA 58.586 36.000 0.00 0.00 0.00 3.58
688 733 7.056006 TGGTTTCAGCAATATAGATGTCACAT 58.944 34.615 0.00 0.00 0.00 3.21
689 734 7.557358 TGGTTTCAGCAATATAGATGTCACATT 59.443 33.333 0.00 0.00 0.00 2.71
690 735 8.408601 GGTTTCAGCAATATAGATGTCACATTT 58.591 33.333 0.00 0.00 0.00 2.32
691 736 9.229784 GTTTCAGCAATATAGATGTCACATTTG 57.770 33.333 0.00 0.00 0.00 2.32
692 737 8.510243 TTCAGCAATATAGATGTCACATTTGT 57.490 30.769 0.00 0.00 0.00 2.83
693 738 8.510243 TCAGCAATATAGATGTCACATTTGTT 57.490 30.769 0.00 0.00 0.00 2.83
694 739 8.615211 TCAGCAATATAGATGTCACATTTGTTC 58.385 33.333 0.00 0.00 0.00 3.18
695 740 8.400186 CAGCAATATAGATGTCACATTTGTTCA 58.600 33.333 0.00 0.00 0.00 3.18
696 741 8.618677 AGCAATATAGATGTCACATTTGTTCAG 58.381 33.333 0.00 0.00 0.00 3.02
697 742 8.400947 GCAATATAGATGTCACATTTGTTCAGT 58.599 33.333 0.00 0.00 0.00 3.41
700 745 7.849804 ATAGATGTCACATTTGTTCAGTACC 57.150 36.000 0.00 0.00 0.00 3.34
701 746 5.620206 AGATGTCACATTTGTTCAGTACCA 58.380 37.500 0.00 0.00 0.00 3.25
702 747 6.061441 AGATGTCACATTTGTTCAGTACCAA 58.939 36.000 0.00 0.00 0.00 3.67
703 748 6.716628 AGATGTCACATTTGTTCAGTACCAAT 59.283 34.615 0.00 0.00 0.00 3.16
704 749 6.312399 TGTCACATTTGTTCAGTACCAATC 57.688 37.500 0.00 0.00 0.00 2.67
705 750 5.240623 TGTCACATTTGTTCAGTACCAATCC 59.759 40.000 0.00 0.00 0.00 3.01
706 751 5.473504 GTCACATTTGTTCAGTACCAATCCT 59.526 40.000 0.00 0.00 0.00 3.24
707 752 5.705441 TCACATTTGTTCAGTACCAATCCTC 59.295 40.000 0.00 0.00 0.00 3.71
708 753 5.707298 CACATTTGTTCAGTACCAATCCTCT 59.293 40.000 0.00 0.00 0.00 3.69
709 754 6.207417 CACATTTGTTCAGTACCAATCCTCTT 59.793 38.462 0.00 0.00 0.00 2.85
710 755 6.777580 ACATTTGTTCAGTACCAATCCTCTTT 59.222 34.615 0.00 0.00 0.00 2.52
711 756 6.877611 TTTGTTCAGTACCAATCCTCTTTC 57.122 37.500 0.00 0.00 0.00 2.62
712 757 5.560722 TGTTCAGTACCAATCCTCTTTCA 57.439 39.130 0.00 0.00 0.00 2.69
713 758 6.126863 TGTTCAGTACCAATCCTCTTTCAT 57.873 37.500 0.00 0.00 0.00 2.57
714 759 6.542821 TGTTCAGTACCAATCCTCTTTCATT 58.457 36.000 0.00 0.00 0.00 2.57
715 760 7.685481 TGTTCAGTACCAATCCTCTTTCATTA 58.315 34.615 0.00 0.00 0.00 1.90
716 761 8.160765 TGTTCAGTACCAATCCTCTTTCATTAA 58.839 33.333 0.00 0.00 0.00 1.40
717 762 9.178758 GTTCAGTACCAATCCTCTTTCATTAAT 57.821 33.333 0.00 0.00 0.00 1.40
718 763 8.964476 TCAGTACCAATCCTCTTTCATTAATC 57.036 34.615 0.00 0.00 0.00 1.75
719 764 8.548025 TCAGTACCAATCCTCTTTCATTAATCA 58.452 33.333 0.00 0.00 0.00 2.57
720 765 9.177608 CAGTACCAATCCTCTTTCATTAATCAA 57.822 33.333 0.00 0.00 0.00 2.57
721 766 9.927081 AGTACCAATCCTCTTTCATTAATCAAT 57.073 29.630 0.00 0.00 0.00 2.57
724 769 9.039165 ACCAATCCTCTTTCATTAATCAATTGT 57.961 29.630 5.13 0.00 0.00 2.71
725 770 9.309516 CCAATCCTCTTTCATTAATCAATTGTG 57.690 33.333 5.13 0.00 0.00 3.33
726 771 9.865321 CAATCCTCTTTCATTAATCAATTGTGT 57.135 29.630 5.13 0.00 0.00 3.72
728 773 9.865321 ATCCTCTTTCATTAATCAATTGTGTTG 57.135 29.630 5.13 0.00 0.00 3.33
729 774 8.859090 TCCTCTTTCATTAATCAATTGTGTTGT 58.141 29.630 5.13 0.00 0.00 3.32
730 775 8.918658 CCTCTTTCATTAATCAATTGTGTTGTG 58.081 33.333 5.13 6.35 0.00 3.33
731 776 9.467258 CTCTTTCATTAATCAATTGTGTTGTGT 57.533 29.630 5.13 0.00 0.00 3.72
732 777 9.462174 TCTTTCATTAATCAATTGTGTTGTGTC 57.538 29.630 5.13 0.00 0.00 3.67
733 778 7.850268 TTCATTAATCAATTGTGTTGTGTCG 57.150 32.000 5.13 0.00 0.00 4.35
734 779 6.377780 TCATTAATCAATTGTGTTGTGTCGG 58.622 36.000 5.13 0.00 0.00 4.79
735 780 5.759506 TTAATCAATTGTGTTGTGTCGGT 57.240 34.783 5.13 0.00 0.00 4.69
736 781 4.647424 AATCAATTGTGTTGTGTCGGTT 57.353 36.364 5.13 0.00 0.00 4.44
737 782 5.759506 AATCAATTGTGTTGTGTCGGTTA 57.240 34.783 5.13 0.00 0.00 2.85
738 783 5.957842 ATCAATTGTGTTGTGTCGGTTAT 57.042 34.783 5.13 0.00 0.00 1.89
739 784 7.441890 AATCAATTGTGTTGTGTCGGTTATA 57.558 32.000 5.13 0.00 0.00 0.98
740 785 6.230849 TCAATTGTGTTGTGTCGGTTATAC 57.769 37.500 5.13 0.00 0.00 1.47
741 786 5.992829 TCAATTGTGTTGTGTCGGTTATACT 59.007 36.000 5.13 0.00 0.00 2.12
742 787 6.146510 TCAATTGTGTTGTGTCGGTTATACTC 59.853 38.462 5.13 0.00 0.00 2.59
743 788 3.916761 TGTGTTGTGTCGGTTATACTCC 58.083 45.455 0.00 0.00 0.00 3.85
744 789 3.321396 TGTGTTGTGTCGGTTATACTCCA 59.679 43.478 0.00 0.00 0.00 3.86
745 790 4.020928 TGTGTTGTGTCGGTTATACTCCAT 60.021 41.667 0.00 0.00 0.00 3.41
746 791 4.565564 GTGTTGTGTCGGTTATACTCCATC 59.434 45.833 0.00 0.00 0.00 3.51
747 792 4.117685 GTTGTGTCGGTTATACTCCATCC 58.882 47.826 0.00 0.00 0.00 3.51
748 793 2.359848 TGTGTCGGTTATACTCCATCCG 59.640 50.000 0.00 0.00 42.12 4.18
749 794 2.360165 GTGTCGGTTATACTCCATCCGT 59.640 50.000 0.00 0.00 41.58 4.69
750 795 3.025978 TGTCGGTTATACTCCATCCGTT 58.974 45.455 0.00 0.00 41.58 4.44
751 796 3.448301 TGTCGGTTATACTCCATCCGTTT 59.552 43.478 0.00 0.00 41.58 3.60
752 797 4.047142 GTCGGTTATACTCCATCCGTTTC 58.953 47.826 0.00 0.00 41.58 2.78
753 798 3.700539 TCGGTTATACTCCATCCGTTTCA 59.299 43.478 0.00 0.00 41.58 2.69
754 799 4.342951 TCGGTTATACTCCATCCGTTTCAT 59.657 41.667 0.00 0.00 41.58 2.57
755 800 5.535783 TCGGTTATACTCCATCCGTTTCATA 59.464 40.000 0.00 0.00 41.58 2.15
756 801 6.040729 TCGGTTATACTCCATCCGTTTCATAA 59.959 38.462 0.00 0.00 41.58 1.90
757 802 6.872020 CGGTTATACTCCATCCGTTTCATAAT 59.128 38.462 0.00 0.00 36.99 1.28
758 803 8.030692 CGGTTATACTCCATCCGTTTCATAATA 58.969 37.037 0.00 0.00 36.99 0.98
759 804 9.886132 GGTTATACTCCATCCGTTTCATAATAT 57.114 33.333 0.00 0.00 0.00 1.28
765 810 7.819900 ACTCCATCCGTTTCATAATATAAGAGC 59.180 37.037 0.00 0.00 0.00 4.09
766 811 6.811665 TCCATCCGTTTCATAATATAAGAGCG 59.188 38.462 0.00 0.00 0.00 5.03
767 812 6.036083 CCATCCGTTTCATAATATAAGAGCGG 59.964 42.308 0.00 0.00 34.92 5.52
768 813 6.092955 TCCGTTTCATAATATAAGAGCGGT 57.907 37.500 0.00 0.00 35.06 5.68
769 814 6.518493 TCCGTTTCATAATATAAGAGCGGTT 58.482 36.000 0.00 0.00 35.06 4.44
770 815 6.987992 TCCGTTTCATAATATAAGAGCGGTTT 59.012 34.615 0.00 0.00 35.06 3.27
771 816 7.496591 TCCGTTTCATAATATAAGAGCGGTTTT 59.503 33.333 0.00 0.00 35.06 2.43
772 817 7.586300 CCGTTTCATAATATAAGAGCGGTTTTG 59.414 37.037 0.00 0.00 31.62 2.44
773 818 8.332464 CGTTTCATAATATAAGAGCGGTTTTGA 58.668 33.333 0.00 0.00 0.00 2.69
774 819 9.434559 GTTTCATAATATAAGAGCGGTTTTGAC 57.565 33.333 0.00 0.00 0.00 3.18
775 820 8.725405 TTCATAATATAAGAGCGGTTTTGACA 57.275 30.769 0.00 0.00 0.00 3.58
776 821 8.138365 TCATAATATAAGAGCGGTTTTGACAC 57.862 34.615 0.00 0.00 0.00 3.67
777 822 5.464965 AATATAAGAGCGGTTTTGACACG 57.535 39.130 0.00 0.00 0.00 4.49
778 823 2.512485 TAAGAGCGGTTTTGACACGA 57.488 45.000 0.00 0.00 0.00 4.35
779 824 1.217882 AAGAGCGGTTTTGACACGAG 58.782 50.000 0.00 0.00 0.00 4.18
780 825 0.600255 AGAGCGGTTTTGACACGAGG 60.600 55.000 0.00 0.00 0.00 4.63
781 826 1.566018 GAGCGGTTTTGACACGAGGG 61.566 60.000 0.00 0.00 0.00 4.30
782 827 1.595929 GCGGTTTTGACACGAGGGA 60.596 57.895 0.00 0.00 0.00 4.20
783 828 1.566018 GCGGTTTTGACACGAGGGAG 61.566 60.000 0.00 0.00 0.00 4.30
784 829 0.249741 CGGTTTTGACACGAGGGAGT 60.250 55.000 0.00 0.00 0.00 3.85
785 830 1.000060 CGGTTTTGACACGAGGGAGTA 60.000 52.381 0.00 0.00 0.00 2.59
786 831 2.546373 CGGTTTTGACACGAGGGAGTAA 60.546 50.000 0.00 0.00 0.00 2.24
787 832 3.671716 GGTTTTGACACGAGGGAGTAAT 58.328 45.455 0.00 0.00 0.00 1.89
788 833 4.070009 GGTTTTGACACGAGGGAGTAATT 58.930 43.478 0.00 0.00 0.00 1.40
789 834 4.083484 GGTTTTGACACGAGGGAGTAATTG 60.083 45.833 0.00 0.00 0.00 2.32
790 835 4.345859 TTTGACACGAGGGAGTAATTGT 57.654 40.909 0.00 0.00 0.00 2.71
791 836 4.345859 TTGACACGAGGGAGTAATTGTT 57.654 40.909 0.00 0.00 0.00 2.83
792 837 4.345859 TGACACGAGGGAGTAATTGTTT 57.654 40.909 0.00 0.00 0.00 2.83
795 840 5.237779 TGACACGAGGGAGTAATTGTTTTTC 59.762 40.000 0.00 0.00 0.00 2.29
799 844 7.172703 ACACGAGGGAGTAATTGTTTTTCTTAG 59.827 37.037 0.00 0.00 0.00 2.18
963 1008 5.061721 AGGAAGTTTTCACCACTACCAAT 57.938 39.130 0.00 0.00 0.00 3.16
964 1009 5.070685 AGGAAGTTTTCACCACTACCAATC 58.929 41.667 0.00 0.00 0.00 2.67
965 1010 4.083484 GGAAGTTTTCACCACTACCAATCG 60.083 45.833 0.00 0.00 0.00 3.34
966 1011 4.081322 AGTTTTCACCACTACCAATCGT 57.919 40.909 0.00 0.00 0.00 3.73
967 1012 4.062991 AGTTTTCACCACTACCAATCGTC 58.937 43.478 0.00 0.00 0.00 4.20
970 1015 1.822990 TCACCACTACCAATCGTCTCC 59.177 52.381 0.00 0.00 0.00 3.71
971 1016 1.134788 CACCACTACCAATCGTCTCCC 60.135 57.143 0.00 0.00 0.00 4.30
972 1017 1.191535 CCACTACCAATCGTCTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
973 1018 1.137086 CCACTACCAATCGTCTCCCAG 59.863 57.143 0.00 0.00 0.00 4.45
1348 1399 3.822192 CCGACATCCGCCTCGACA 61.822 66.667 0.00 0.00 36.84 4.35
1446 1497 1.068943 TCCTCCTCCCTCTCCGCTAT 61.069 60.000 0.00 0.00 0.00 2.97
1527 1578 4.632458 GGATCCGGCGAGCTCGAC 62.632 72.222 38.74 35.62 45.58 4.20
1692 1743 2.560981 GTTCCATTTCAACATCCCCGTT 59.439 45.455 0.00 0.00 0.00 4.44
1767 1818 9.739276 TGTCTTTGATTGATTGTTAGGAACTAT 57.261 29.630 0.00 0.00 42.38 2.12
1786 1932 3.698029 ATTCTATGATGTTGGTTGCGC 57.302 42.857 0.00 0.00 0.00 6.09
1801 1948 2.742053 GTTGCGCGGATTGGATATGTAT 59.258 45.455 8.83 0.00 0.00 2.29
1842 1992 6.785963 AGGTTATAATGGGCTAGCTTACACTA 59.214 38.462 15.72 6.47 0.00 2.74
1848 1998 3.134458 GGGCTAGCTTACACTATTGCTG 58.866 50.000 15.72 0.00 37.02 4.41
1858 2008 6.590292 GCTTACACTATTGCTGTTCTACTGAA 59.410 38.462 0.00 0.00 0.00 3.02
1907 2057 4.520111 TGAGATTGCCGAATTATTGGATGG 59.480 41.667 0.00 0.00 30.72 3.51
1965 2123 5.730550 AGTATTCGTTCTGGCTAAATGTCA 58.269 37.500 0.00 0.00 0.00 3.58
2043 2201 7.389607 GCAAGGTCAAGAACTAATTTGGTACTA 59.610 37.037 0.00 0.00 0.00 1.82
2044 2202 8.936864 CAAGGTCAAGAACTAATTTGGTACTAG 58.063 37.037 0.00 0.00 0.00 2.57
2045 2203 8.203681 AGGTCAAGAACTAATTTGGTACTAGT 57.796 34.615 0.00 0.00 0.00 2.57
2046 2204 8.657712 AGGTCAAGAACTAATTTGGTACTAGTT 58.342 33.333 0.00 4.61 38.32 2.24
2047 2205 9.281371 GGTCAAGAACTAATTTGGTACTAGTTT 57.719 33.333 0.00 0.00 36.30 2.66
2157 2409 0.886563 GGTTTGCAGCTGCTGATCTT 59.113 50.000 36.61 0.00 42.66 2.40
2159 2411 1.135460 GTTTGCAGCTGCTGATCTTCC 60.135 52.381 36.61 14.10 42.66 3.46
2162 2414 1.340697 TGCAGCTGCTGATCTTCCATT 60.341 47.619 36.61 0.00 42.66 3.16
2167 2419 2.358267 GCTGCTGATCTTCCATTTCCAG 59.642 50.000 0.00 0.00 0.00 3.86
2169 2421 3.878103 CTGCTGATCTTCCATTTCCAGAG 59.122 47.826 0.00 0.00 0.00 3.35
2170 2422 3.212685 GCTGATCTTCCATTTCCAGAGG 58.787 50.000 0.00 0.00 0.00 3.69
2171 2423 3.818180 CTGATCTTCCATTTCCAGAGGG 58.182 50.000 0.00 0.00 0.00 4.30
2172 2424 3.457380 CTGATCTTCCATTTCCAGAGGGA 59.543 47.826 0.00 0.00 43.03 4.20
2173 2425 3.200825 TGATCTTCCATTTCCAGAGGGAC 59.799 47.826 0.00 0.00 44.89 4.46
2177 2487 1.815421 CATTTCCAGAGGGACCGCG 60.815 63.158 0.00 0.00 44.89 6.46
2203 2725 1.130678 GGGAGGGGATCAGGCCTAAG 61.131 65.000 3.98 0.00 0.00 2.18
2204 2726 0.104934 GGAGGGGATCAGGCCTAAGA 60.105 60.000 3.98 0.00 0.00 2.10
2212 2752 0.687757 TCAGGCCTAAGATGCGGACT 60.688 55.000 3.98 0.00 39.98 3.85
2354 2894 5.055144 CACTGATCAGTTATCTCACCATGG 58.945 45.833 25.84 11.19 40.20 3.66
2390 2930 8.238631 GGTCTGAAAGTGTAGAGTTAGACTTAG 58.761 40.741 9.18 0.00 41.14 2.18
2451 2991 8.081633 CCTACATGAATGCAACTTTGAACTAAA 58.918 33.333 0.00 0.00 0.00 1.85
2477 3017 5.465390 GGTTCCAAACTGGCTTATTCAAAAC 59.535 40.000 0.00 0.00 37.47 2.43
2508 3049 9.851686 AACATCCATTACTTATAATCAGCAGAA 57.148 29.630 0.00 0.00 0.00 3.02
2639 3180 5.753921 GTCATGAAATTAACTACTCCCTCCG 59.246 44.000 0.00 0.00 0.00 4.63
2667 3208 6.866248 CCAAATTAATTGTCGCACCTTTAGTT 59.134 34.615 0.39 0.00 37.32 2.24
2706 3464 4.245660 CTGCGACATTAATATGGATCGGT 58.754 43.478 0.00 0.00 36.01 4.69
2726 3484 7.008021 TCGGTGGGAGTATAAAAAGTTAGTT 57.992 36.000 0.00 0.00 0.00 2.24
2818 4385 6.882656 AGTGCATGAGTGATAGTACTTTCAT 58.117 36.000 17.43 9.17 0.00 2.57
2944 4513 1.418637 TGGAGGTTTAACAAGCCGAGT 59.581 47.619 0.00 0.00 0.00 4.18
2966 4535 4.918201 GCCCTCCGCCCAATCTCG 62.918 72.222 0.00 0.00 0.00 4.04
3087 4657 1.134128 TGTGAGCATGACCACACAGTT 60.134 47.619 14.15 0.00 38.26 3.16
3122 4692 8.344098 CGAATTTAGTGGTTTTGGTTGTAGTTA 58.656 33.333 0.00 0.00 0.00 2.24
3136 4706 7.323420 TGGTTGTAGTTAAGACTCTGATCATG 58.677 38.462 0.00 0.00 37.33 3.07
3254 4824 0.445436 CAAGTAGCAAAGCCAGCTCG 59.555 55.000 0.00 0.00 42.32 5.03
3354 4924 1.980784 ATGCTAGAGGGCCTGCTGTG 61.981 60.000 12.95 7.06 0.00 3.66
3370 4940 7.260603 GCCTGCTGTGTTTATTTATTCAATCT 58.739 34.615 0.00 0.00 0.00 2.40
3416 4988 5.901413 ATGGATTAGAGAAGCAGGAATGA 57.099 39.130 0.00 0.00 0.00 2.57
3435 5007 2.087646 GAGAACCTGAACATTGGAGCC 58.912 52.381 0.00 0.00 0.00 4.70
3450 5022 3.253955 GCCGTATTATGGCGCCAG 58.746 61.111 35.36 19.96 40.96 4.85
3497 5069 9.701355 CGGGAACATTTTATTATTTTCAAATGC 57.299 29.630 3.88 0.00 39.32 3.56
3516 5088 5.603170 ATGCACATATTTTTCCCTGGAAG 57.397 39.130 0.00 0.00 35.38 3.46
3614 5186 8.839343 TGTATTTGTGATATGTTTGCATCCTAG 58.161 33.333 0.00 0.00 36.58 3.02
3695 5269 5.748152 CGGATCAGCTTTTTGACAAAGAAAA 59.252 36.000 0.10 0.00 0.00 2.29
3722 5296 6.771188 AATCTGTGAAACTCTAACAACTCG 57.229 37.500 0.00 0.00 38.04 4.18
3723 5297 4.049186 TCTGTGAAACTCTAACAACTCGC 58.951 43.478 0.00 0.00 38.04 5.03
3835 5442 2.164219 CTGGCTCTGTTGTTGTTGTTGT 59.836 45.455 0.00 0.00 0.00 3.32
3836 5443 2.560542 TGGCTCTGTTGTTGTTGTTGTT 59.439 40.909 0.00 0.00 0.00 2.83
3837 5444 2.923020 GGCTCTGTTGTTGTTGTTGTTG 59.077 45.455 0.00 0.00 0.00 3.33
3848 5455 0.527385 TTGTTGTTGAGCTTTGGCGC 60.527 50.000 0.00 0.00 44.37 6.53
3866 5473 2.735663 GCGCTCTTGATGGAGTATGATG 59.264 50.000 0.00 0.00 35.89 3.07
3920 5527 3.041211 TGCAGAGCTGGGTCTGTATAAT 58.959 45.455 24.34 0.00 45.07 1.28
4184 5791 5.123820 TGGCCTTCGAATTTCTGAATAACAG 59.876 40.000 3.32 0.00 46.97 3.16
4196 5803 4.948004 TCTGAATAACAGTCGGCTTAGAGA 59.052 41.667 0.00 0.00 45.86 3.10
4201 5808 4.373348 AACAGTCGGCTTAGAGATGTAC 57.627 45.455 0.00 0.00 0.00 2.90
4202 5809 3.622630 ACAGTCGGCTTAGAGATGTACT 58.377 45.455 0.00 0.00 0.00 2.73
4203 5810 3.628487 ACAGTCGGCTTAGAGATGTACTC 59.372 47.826 0.00 0.00 45.22 2.59
4218 5826 2.500098 TGTACTCATAGGGTGCAACTCC 59.500 50.000 0.00 0.00 39.04 3.85
4219 5827 1.958288 ACTCATAGGGTGCAACTCCT 58.042 50.000 0.00 5.70 39.04 3.69
4220 5828 1.834263 ACTCATAGGGTGCAACTCCTC 59.166 52.381 0.00 0.00 39.04 3.71
4267 5875 3.124636 GCACGTGGGTAAAGTCAGTTATG 59.875 47.826 18.88 0.00 0.00 1.90
4301 5909 1.064017 TCCACCACCTCACTTTGCTTT 60.064 47.619 0.00 0.00 0.00 3.51
4351 6018 8.348507 CAAATGTAAGATAAGATGGGAGAAAGC 58.651 37.037 0.00 0.00 0.00 3.51
4388 6055 2.761465 GGGCAGCCTAGGCATCCTT 61.761 63.158 34.70 11.89 44.88 3.36
4397 6064 2.374504 CCTAGGCATCCTTGACATGGAT 59.625 50.000 15.45 15.45 44.44 3.41
4448 6115 2.608623 CCTTGGTTGGTTTGGAAGGAT 58.391 47.619 0.00 0.00 36.09 3.24
4451 6118 1.337118 GGTTGGTTTGGAAGGATGCA 58.663 50.000 0.00 0.00 0.00 3.96
4452 6119 1.691434 GGTTGGTTTGGAAGGATGCAA 59.309 47.619 0.00 0.00 34.82 4.08
4501 6168 3.882444 CATGTGATGAAGAGGACATGGT 58.118 45.455 0.00 0.00 41.25 3.55
4503 6170 2.905736 TGTGATGAAGAGGACATGGTGA 59.094 45.455 0.00 0.00 0.00 4.02
4505 6172 4.716287 TGTGATGAAGAGGACATGGTGATA 59.284 41.667 0.00 0.00 0.00 2.15
4529 6196 2.119801 ATGAGTGCACTTCCATCACC 57.880 50.000 22.65 5.86 0.00 4.02
4539 6206 1.175983 TTCCATCACCGTTGGCAACC 61.176 55.000 23.68 7.21 34.06 3.77
4541 6208 1.963855 CATCACCGTTGGCAACCGA 60.964 57.895 23.68 17.46 0.00 4.69
4576 6243 2.116125 GCACTCCCCTTGGCTTGT 59.884 61.111 0.00 0.00 0.00 3.16
4586 6253 1.733402 CTTGGCTTGTGGGTCGCAAA 61.733 55.000 0.00 0.00 33.37 3.68
4625 6292 4.216042 CCCTCCATTTTTGCAATTTCCAAC 59.784 41.667 0.00 0.00 0.00 3.77
4707 6374 4.261578 ACAAATTCTGGGCTCACAATTG 57.738 40.909 3.24 3.24 0.00 2.32
4728 6395 7.976135 ATTGAGCACATCCTTGAATACTATC 57.024 36.000 0.00 0.00 0.00 2.08
4731 6398 5.862845 AGCACATCCTTGAATACTATCAGG 58.137 41.667 0.00 0.00 0.00 3.86
4734 6401 6.017605 GCACATCCTTGAATACTATCAGGTTG 60.018 42.308 0.00 0.00 0.00 3.77
4784 6451 1.627834 GAGGGGGTGGATGATGAGATC 59.372 57.143 0.00 0.00 0.00 2.75
4790 6457 3.432186 GGGTGGATGATGAGATCGTTTGA 60.432 47.826 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.735772 CCGCACCCTCTGGTATGCT 61.736 63.158 7.98 0.00 45.57 3.79
67 68 0.037447 AGGAGGGCAAAGAAGAGCAC 59.963 55.000 0.00 0.00 0.00 4.40
121 122 2.436646 CACCACCTCGATGCCACC 60.437 66.667 0.00 0.00 0.00 4.61
350 357 0.523966 AGATCGCATCTAGCTACCGC 59.476 55.000 0.00 0.00 42.61 5.68
422 430 1.067776 CGAGACAAAGGGTTCTACGCT 60.068 52.381 0.00 0.00 43.70 5.07
443 451 1.556564 CCTCAATATATACCGCGGCG 58.443 55.000 28.58 16.78 0.00 6.46
521 554 2.763448 CCCTCTCTGGTCGATCTTTCTT 59.237 50.000 0.00 0.00 0.00 2.52
540 574 3.294214 TCTCTATCCCTTGTAACGACCC 58.706 50.000 0.00 0.00 0.00 4.46
614 659 5.652994 AAACAAGGTGCTTGAGTTGTTAA 57.347 34.783 0.00 0.00 43.42 2.01
623 668 3.798337 GTGATCACAAAACAAGGTGCTTG 59.202 43.478 21.07 0.00 45.85 4.01
624 669 3.446873 TGTGATCACAAAACAAGGTGCTT 59.553 39.130 26.02 0.00 38.56 3.91
625 670 3.023119 TGTGATCACAAAACAAGGTGCT 58.977 40.909 26.02 0.00 38.56 4.40
626 671 3.435105 TGTGATCACAAAACAAGGTGC 57.565 42.857 26.02 0.00 38.56 5.01
637 682 6.998074 AGTACCTTCTCATTTTTGTGATCACA 59.002 34.615 24.56 24.56 39.98 3.58
638 683 7.440523 AGTACCTTCTCATTTTTGTGATCAC 57.559 36.000 19.27 19.27 0.00 3.06
639 684 7.040478 CCAAGTACCTTCTCATTTTTGTGATCA 60.040 37.037 0.00 0.00 0.00 2.92
640 685 7.040409 ACCAAGTACCTTCTCATTTTTGTGATC 60.040 37.037 0.00 0.00 0.00 2.92
641 686 6.777580 ACCAAGTACCTTCTCATTTTTGTGAT 59.222 34.615 0.00 0.00 0.00 3.06
642 687 6.126409 ACCAAGTACCTTCTCATTTTTGTGA 58.874 36.000 0.00 0.00 0.00 3.58
643 688 6.391227 ACCAAGTACCTTCTCATTTTTGTG 57.609 37.500 0.00 0.00 0.00 3.33
644 689 7.123547 TGAAACCAAGTACCTTCTCATTTTTGT 59.876 33.333 0.00 0.00 0.00 2.83
645 690 7.488322 TGAAACCAAGTACCTTCTCATTTTTG 58.512 34.615 0.00 0.00 0.00 2.44
646 691 7.654022 TGAAACCAAGTACCTTCTCATTTTT 57.346 32.000 0.00 0.00 0.00 1.94
647 692 6.239036 GCTGAAACCAAGTACCTTCTCATTTT 60.239 38.462 0.00 0.00 0.00 1.82
648 693 5.241728 GCTGAAACCAAGTACCTTCTCATTT 59.758 40.000 0.00 0.00 0.00 2.32
649 694 4.762251 GCTGAAACCAAGTACCTTCTCATT 59.238 41.667 0.00 0.00 0.00 2.57
650 695 4.202461 TGCTGAAACCAAGTACCTTCTCAT 60.202 41.667 0.00 0.00 0.00 2.90
651 696 3.135712 TGCTGAAACCAAGTACCTTCTCA 59.864 43.478 0.00 0.00 0.00 3.27
652 697 3.740115 TGCTGAAACCAAGTACCTTCTC 58.260 45.455 0.00 0.00 0.00 2.87
653 698 3.857157 TGCTGAAACCAAGTACCTTCT 57.143 42.857 0.00 0.00 0.00 2.85
654 699 6.759497 ATATTGCTGAAACCAAGTACCTTC 57.241 37.500 0.00 0.00 0.00 3.46
655 700 7.630082 TCTATATTGCTGAAACCAAGTACCTT 58.370 34.615 0.00 0.00 0.00 3.50
656 701 7.195374 TCTATATTGCTGAAACCAAGTACCT 57.805 36.000 0.00 0.00 0.00 3.08
657 702 7.499232 ACATCTATATTGCTGAAACCAAGTACC 59.501 37.037 0.00 0.00 0.00 3.34
658 703 8.438676 ACATCTATATTGCTGAAACCAAGTAC 57.561 34.615 0.00 0.00 0.00 2.73
659 704 8.264347 TGACATCTATATTGCTGAAACCAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
660 705 7.066284 GTGACATCTATATTGCTGAAACCAAGT 59.934 37.037 0.00 0.00 0.00 3.16
661 706 7.066163 TGTGACATCTATATTGCTGAAACCAAG 59.934 37.037 0.00 0.00 0.00 3.61
662 707 6.883756 TGTGACATCTATATTGCTGAAACCAA 59.116 34.615 0.00 0.00 0.00 3.67
663 708 6.413892 TGTGACATCTATATTGCTGAAACCA 58.586 36.000 0.00 0.00 0.00 3.67
664 709 6.925610 TGTGACATCTATATTGCTGAAACC 57.074 37.500 0.00 0.00 0.00 3.27
665 710 9.229784 CAAATGTGACATCTATATTGCTGAAAC 57.770 33.333 0.00 0.00 0.00 2.78
666 711 8.959548 ACAAATGTGACATCTATATTGCTGAAA 58.040 29.630 0.00 0.00 0.00 2.69
667 712 8.510243 ACAAATGTGACATCTATATTGCTGAA 57.490 30.769 0.00 0.00 0.00 3.02
668 713 8.510243 AACAAATGTGACATCTATATTGCTGA 57.490 30.769 0.00 0.00 0.00 4.26
669 714 8.400186 TGAACAAATGTGACATCTATATTGCTG 58.600 33.333 0.00 0.00 0.00 4.41
670 715 8.510243 TGAACAAATGTGACATCTATATTGCT 57.490 30.769 0.00 0.00 0.00 3.91
671 716 8.400947 ACTGAACAAATGTGACATCTATATTGC 58.599 33.333 0.00 0.00 0.00 3.56
674 719 9.547753 GGTACTGAACAAATGTGACATCTATAT 57.452 33.333 0.00 0.00 0.00 0.86
675 720 8.536175 TGGTACTGAACAAATGTGACATCTATA 58.464 33.333 0.00 0.00 0.00 1.31
676 721 7.394016 TGGTACTGAACAAATGTGACATCTAT 58.606 34.615 0.00 0.00 0.00 1.98
677 722 6.764379 TGGTACTGAACAAATGTGACATCTA 58.236 36.000 0.00 0.00 0.00 1.98
678 723 5.620206 TGGTACTGAACAAATGTGACATCT 58.380 37.500 0.00 0.00 0.00 2.90
679 724 5.940192 TGGTACTGAACAAATGTGACATC 57.060 39.130 0.00 0.00 0.00 3.06
680 725 6.071952 GGATTGGTACTGAACAAATGTGACAT 60.072 38.462 0.00 0.00 31.42 3.06
681 726 5.240623 GGATTGGTACTGAACAAATGTGACA 59.759 40.000 0.00 0.00 31.42 3.58
682 727 5.473504 AGGATTGGTACTGAACAAATGTGAC 59.526 40.000 0.00 0.00 31.42 3.67
683 728 5.630121 AGGATTGGTACTGAACAAATGTGA 58.370 37.500 0.00 0.00 31.42 3.58
684 729 5.707298 AGAGGATTGGTACTGAACAAATGTG 59.293 40.000 0.00 0.00 31.42 3.21
685 730 5.880901 AGAGGATTGGTACTGAACAAATGT 58.119 37.500 0.00 0.00 31.42 2.71
686 731 6.824305 AAGAGGATTGGTACTGAACAAATG 57.176 37.500 0.00 0.00 31.42 2.32
687 732 7.004086 TGAAAGAGGATTGGTACTGAACAAAT 58.996 34.615 0.00 0.00 34.18 2.32
688 733 6.361433 TGAAAGAGGATTGGTACTGAACAAA 58.639 36.000 0.00 0.00 0.00 2.83
689 734 5.935945 TGAAAGAGGATTGGTACTGAACAA 58.064 37.500 0.00 0.00 0.00 2.83
690 735 5.560722 TGAAAGAGGATTGGTACTGAACA 57.439 39.130 0.00 0.00 0.00 3.18
691 736 8.561738 TTAATGAAAGAGGATTGGTACTGAAC 57.438 34.615 0.00 0.00 0.00 3.18
692 737 9.396022 GATTAATGAAAGAGGATTGGTACTGAA 57.604 33.333 0.00 0.00 0.00 3.02
693 738 8.548025 TGATTAATGAAAGAGGATTGGTACTGA 58.452 33.333 0.00 0.00 0.00 3.41
694 739 8.737168 TGATTAATGAAAGAGGATTGGTACTG 57.263 34.615 0.00 0.00 0.00 2.74
695 740 9.927081 ATTGATTAATGAAAGAGGATTGGTACT 57.073 29.630 0.00 0.00 0.00 2.73
698 743 9.039165 ACAATTGATTAATGAAAGAGGATTGGT 57.961 29.630 13.59 0.00 0.00 3.67
699 744 9.309516 CACAATTGATTAATGAAAGAGGATTGG 57.690 33.333 13.59 0.00 0.00 3.16
700 745 9.865321 ACACAATTGATTAATGAAAGAGGATTG 57.135 29.630 13.59 0.00 0.00 2.67
702 747 9.865321 CAACACAATTGATTAATGAAAGAGGAT 57.135 29.630 13.59 0.00 0.00 3.24
703 748 8.859090 ACAACACAATTGATTAATGAAAGAGGA 58.141 29.630 13.59 0.00 0.00 3.71
704 749 8.918658 CACAACACAATTGATTAATGAAAGAGG 58.081 33.333 13.59 0.00 0.00 3.69
705 750 9.467258 ACACAACACAATTGATTAATGAAAGAG 57.533 29.630 13.59 0.00 0.00 2.85
706 751 9.462174 GACACAACACAATTGATTAATGAAAGA 57.538 29.630 13.59 0.00 0.00 2.52
707 752 8.419435 CGACACAACACAATTGATTAATGAAAG 58.581 33.333 13.59 0.00 0.00 2.62
708 753 7.380870 CCGACACAACACAATTGATTAATGAAA 59.619 33.333 13.59 0.00 0.00 2.69
709 754 6.860539 CCGACACAACACAATTGATTAATGAA 59.139 34.615 13.59 0.00 0.00 2.57
710 755 6.016693 ACCGACACAACACAATTGATTAATGA 60.017 34.615 13.59 0.00 0.00 2.57
711 756 6.148948 ACCGACACAACACAATTGATTAATG 58.851 36.000 13.59 9.89 0.00 1.90
712 757 6.325919 ACCGACACAACACAATTGATTAAT 57.674 33.333 13.59 0.00 0.00 1.40
713 758 5.759506 ACCGACACAACACAATTGATTAA 57.240 34.783 13.59 0.00 0.00 1.40
714 759 5.759506 AACCGACACAACACAATTGATTA 57.240 34.783 13.59 0.00 0.00 1.75
715 760 4.647424 AACCGACACAACACAATTGATT 57.353 36.364 13.59 3.09 0.00 2.57
716 761 5.957842 ATAACCGACACAACACAATTGAT 57.042 34.783 13.59 0.00 0.00 2.57
717 762 5.992829 AGTATAACCGACACAACACAATTGA 59.007 36.000 13.59 0.00 0.00 2.57
718 763 6.236017 AGTATAACCGACACAACACAATTG 57.764 37.500 3.24 3.24 0.00 2.32
719 764 5.410439 GGAGTATAACCGACACAACACAATT 59.590 40.000 0.00 0.00 0.00 2.32
720 765 4.933400 GGAGTATAACCGACACAACACAAT 59.067 41.667 0.00 0.00 0.00 2.71
721 766 4.202233 TGGAGTATAACCGACACAACACAA 60.202 41.667 0.00 0.00 0.00 3.33
722 767 3.321396 TGGAGTATAACCGACACAACACA 59.679 43.478 0.00 0.00 0.00 3.72
723 768 3.916761 TGGAGTATAACCGACACAACAC 58.083 45.455 0.00 0.00 0.00 3.32
724 769 4.382254 GGATGGAGTATAACCGACACAACA 60.382 45.833 0.00 0.00 0.00 3.33
725 770 4.117685 GGATGGAGTATAACCGACACAAC 58.882 47.826 0.00 0.00 0.00 3.32
726 771 3.181484 CGGATGGAGTATAACCGACACAA 60.181 47.826 0.00 0.00 45.31 3.33
727 772 2.359848 CGGATGGAGTATAACCGACACA 59.640 50.000 0.00 0.00 45.31 3.72
728 773 2.360165 ACGGATGGAGTATAACCGACAC 59.640 50.000 0.00 0.00 45.31 3.67
729 774 2.658285 ACGGATGGAGTATAACCGACA 58.342 47.619 0.00 0.00 45.31 4.35
730 775 3.722728 AACGGATGGAGTATAACCGAC 57.277 47.619 0.00 0.00 45.31 4.79
731 776 3.700539 TGAAACGGATGGAGTATAACCGA 59.299 43.478 0.00 0.00 45.31 4.69
733 778 9.886132 ATATTATGAAACGGATGGAGTATAACC 57.114 33.333 0.00 0.00 0.00 2.85
739 784 7.819900 GCTCTTATATTATGAAACGGATGGAGT 59.180 37.037 0.00 0.00 0.00 3.85
740 785 7.009631 CGCTCTTATATTATGAAACGGATGGAG 59.990 40.741 0.00 0.00 0.00 3.86
741 786 6.811665 CGCTCTTATATTATGAAACGGATGGA 59.188 38.462 0.00 0.00 0.00 3.41
742 787 6.036083 CCGCTCTTATATTATGAAACGGATGG 59.964 42.308 0.00 0.00 35.47 3.51
743 788 6.590292 ACCGCTCTTATATTATGAAACGGATG 59.410 38.462 0.00 0.00 36.24 3.51
744 789 6.698380 ACCGCTCTTATATTATGAAACGGAT 58.302 36.000 0.00 0.00 36.24 4.18
745 790 6.092955 ACCGCTCTTATATTATGAAACGGA 57.907 37.500 0.00 0.00 36.24 4.69
746 791 6.780706 AACCGCTCTTATATTATGAAACGG 57.219 37.500 0.00 0.00 37.51 4.44
747 792 8.332464 TCAAAACCGCTCTTATATTATGAAACG 58.668 33.333 0.00 0.00 0.00 3.60
748 793 9.434559 GTCAAAACCGCTCTTATATTATGAAAC 57.565 33.333 0.00 0.00 0.00 2.78
749 794 9.168451 TGTCAAAACCGCTCTTATATTATGAAA 57.832 29.630 0.00 0.00 0.00 2.69
750 795 8.609176 GTGTCAAAACCGCTCTTATATTATGAA 58.391 33.333 0.00 0.00 0.00 2.57
751 796 7.042992 CGTGTCAAAACCGCTCTTATATTATGA 60.043 37.037 0.00 0.00 0.00 2.15
752 797 7.042992 TCGTGTCAAAACCGCTCTTATATTATG 60.043 37.037 0.00 0.00 0.00 1.90
753 798 6.982141 TCGTGTCAAAACCGCTCTTATATTAT 59.018 34.615 0.00 0.00 0.00 1.28
754 799 6.331845 TCGTGTCAAAACCGCTCTTATATTA 58.668 36.000 0.00 0.00 0.00 0.98
755 800 5.172934 TCGTGTCAAAACCGCTCTTATATT 58.827 37.500 0.00 0.00 0.00 1.28
756 801 4.751060 TCGTGTCAAAACCGCTCTTATAT 58.249 39.130 0.00 0.00 0.00 0.86
757 802 4.171005 CTCGTGTCAAAACCGCTCTTATA 58.829 43.478 0.00 0.00 0.00 0.98
758 803 2.993899 CTCGTGTCAAAACCGCTCTTAT 59.006 45.455 0.00 0.00 0.00 1.73
759 804 2.400399 CTCGTGTCAAAACCGCTCTTA 58.600 47.619 0.00 0.00 0.00 2.10
760 805 1.217882 CTCGTGTCAAAACCGCTCTT 58.782 50.000 0.00 0.00 0.00 2.85
761 806 0.600255 CCTCGTGTCAAAACCGCTCT 60.600 55.000 0.00 0.00 0.00 4.09
762 807 1.566018 CCCTCGTGTCAAAACCGCTC 61.566 60.000 0.00 0.00 0.00 5.03
763 808 1.597027 CCCTCGTGTCAAAACCGCT 60.597 57.895 0.00 0.00 0.00 5.52
764 809 1.566018 CTCCCTCGTGTCAAAACCGC 61.566 60.000 0.00 0.00 0.00 5.68
765 810 0.249741 ACTCCCTCGTGTCAAAACCG 60.250 55.000 0.00 0.00 0.00 4.44
766 811 2.825861 TACTCCCTCGTGTCAAAACC 57.174 50.000 0.00 0.00 0.00 3.27
767 812 4.514066 ACAATTACTCCCTCGTGTCAAAAC 59.486 41.667 0.00 0.00 0.00 2.43
768 813 4.710324 ACAATTACTCCCTCGTGTCAAAA 58.290 39.130 0.00 0.00 0.00 2.44
769 814 4.345859 ACAATTACTCCCTCGTGTCAAA 57.654 40.909 0.00 0.00 0.00 2.69
770 815 4.345859 AACAATTACTCCCTCGTGTCAA 57.654 40.909 0.00 0.00 0.00 3.18
771 816 4.345859 AAACAATTACTCCCTCGTGTCA 57.654 40.909 0.00 0.00 0.00 3.58
772 817 5.469084 AGAAAAACAATTACTCCCTCGTGTC 59.531 40.000 0.00 0.00 0.00 3.67
773 818 5.374071 AGAAAAACAATTACTCCCTCGTGT 58.626 37.500 0.00 0.00 0.00 4.49
774 819 5.941948 AGAAAAACAATTACTCCCTCGTG 57.058 39.130 0.00 0.00 0.00 4.35
775 820 7.447594 TCTAAGAAAAACAATTACTCCCTCGT 58.552 34.615 0.00 0.00 0.00 4.18
776 821 7.900782 TCTAAGAAAAACAATTACTCCCTCG 57.099 36.000 0.00 0.00 0.00 4.63
777 822 9.232473 ACATCTAAGAAAAACAATTACTCCCTC 57.768 33.333 0.00 0.00 0.00 4.30
778 823 9.014297 CACATCTAAGAAAAACAATTACTCCCT 57.986 33.333 0.00 0.00 0.00 4.20
779 824 9.010029 TCACATCTAAGAAAAACAATTACTCCC 57.990 33.333 0.00 0.00 0.00 4.30
820 865 7.094762 CCCACAAGACAATTTAACCTCTTCTAC 60.095 40.741 0.00 0.00 0.00 2.59
941 986 4.513406 TTGGTAGTGGTGAAAACTTCCT 57.487 40.909 0.00 0.00 36.39 3.36
963 1008 2.680352 GCTGGGACTGGGAGACGA 60.680 66.667 0.00 0.00 0.00 4.20
964 1009 3.775654 GGCTGGGACTGGGAGACG 61.776 72.222 0.00 0.00 0.00 4.18
965 1010 3.775654 CGGCTGGGACTGGGAGAC 61.776 72.222 0.00 0.00 0.00 3.36
971 1016 4.641645 TGGTTGCGGCTGGGACTG 62.642 66.667 0.00 0.00 0.00 3.51
972 1017 4.643387 GTGGTTGCGGCTGGGACT 62.643 66.667 0.00 0.00 0.00 3.85
973 1018 4.643387 AGTGGTTGCGGCTGGGAC 62.643 66.667 0.00 0.00 0.00 4.46
1076 1127 1.080354 TAGTACAGGTGCTGGGGCT 59.920 57.895 0.00 0.00 39.59 5.19
1079 1130 1.153628 GCGTAGTACAGGTGCTGGG 60.154 63.158 0.38 0.00 35.51 4.45
1082 1133 1.955080 GATAGGCGTAGTACAGGTGCT 59.045 52.381 0.38 0.00 0.00 4.40
1083 1134 1.000496 GGATAGGCGTAGTACAGGTGC 60.000 57.143 0.38 0.00 0.00 5.01
1084 1135 1.612463 GGGATAGGCGTAGTACAGGTG 59.388 57.143 0.38 0.00 0.00 4.00
1085 1136 1.816961 CGGGATAGGCGTAGTACAGGT 60.817 57.143 0.38 0.00 0.00 4.00
1086 1137 0.879765 CGGGATAGGCGTAGTACAGG 59.120 60.000 0.38 0.00 0.00 4.00
1087 1138 0.240411 GCGGGATAGGCGTAGTACAG 59.760 60.000 0.38 0.00 0.00 2.74
1088 1139 1.174712 GGCGGGATAGGCGTAGTACA 61.175 60.000 0.38 0.00 0.00 2.90
1386 1437 2.317609 GCTGAGCGCGAGGTTGAAA 61.318 57.895 12.10 0.00 45.11 2.69
1425 1476 2.428085 GCGGAGAGGGAGGAGGAAC 61.428 68.421 0.00 0.00 0.00 3.62
1526 1577 0.749454 ATACGTAACCCCTCTCGCGT 60.749 55.000 5.77 0.00 36.52 6.01
1527 1578 0.317603 CATACGTAACCCCTCTCGCG 60.318 60.000 0.00 0.00 0.00 5.87
1692 1743 5.827797 GGCATCCAATCAGTCAATTACCTTA 59.172 40.000 0.00 0.00 0.00 2.69
1767 1818 1.396648 CGCGCAACCAACATCATAGAA 59.603 47.619 8.75 0.00 0.00 2.10
1786 1932 6.655003 AGCTTACCAAATACATATCCAATCCG 59.345 38.462 0.00 0.00 0.00 4.18
1842 1992 7.023575 CGCTAAAAATTCAGTAGAACAGCAAT 58.976 34.615 0.00 0.00 36.39 3.56
1848 1998 6.402226 CCCAGTCGCTAAAAATTCAGTAGAAC 60.402 42.308 0.00 0.00 36.39 3.01
1858 2008 3.950397 TCATGACCCAGTCGCTAAAAAT 58.050 40.909 0.00 0.00 34.95 1.82
1907 2057 4.641989 ACTTCCTATGATCACACCAAATGC 59.358 41.667 0.00 0.00 0.00 3.56
1965 2123 8.606830 ACTAATCCTCACAACTCCTTTTAGATT 58.393 33.333 0.00 0.00 0.00 2.40
2011 2169 1.202976 AGTTCTTGACCTTGCCATGCT 60.203 47.619 0.00 0.00 0.00 3.79
2157 2409 1.910580 GCGGTCCCTCTGGAAATGGA 61.911 60.000 0.00 0.00 44.07 3.41
2159 2411 1.815421 CGCGGTCCCTCTGGAAATG 60.815 63.158 0.00 0.00 44.07 2.32
2184 2494 1.073706 TTAGGCCTGATCCCCTCCC 60.074 63.158 17.99 0.00 32.65 4.30
2187 2497 1.739750 CATCTTAGGCCTGATCCCCT 58.260 55.000 17.99 0.00 35.22 4.79
2190 2500 0.321122 CCGCATCTTAGGCCTGATCC 60.321 60.000 17.99 0.00 0.00 3.36
2194 2716 0.179000 AAGTCCGCATCTTAGGCCTG 59.821 55.000 17.99 0.00 0.00 4.85
2218 2758 5.551760 AGTCTGCACTGCAACAATATTAC 57.448 39.130 4.99 0.00 38.41 1.89
2235 2775 9.653287 TCAATACCTCACTAACATAAAAGTCTG 57.347 33.333 0.00 0.00 0.00 3.51
2322 2862 8.409371 TGAGATAACTGATCAGTGATAACTGTC 58.591 37.037 28.52 17.99 41.58 3.51
2354 2894 2.771328 CTTTCAGACCCCTGGCACCC 62.771 65.000 0.00 0.00 40.76 4.61
2362 2902 4.771054 TCTAACTCTACACTTTCAGACCCC 59.229 45.833 0.00 0.00 0.00 4.95
2390 2930 2.955614 TCTAGGCTAAACACTTCGTGC 58.044 47.619 0.00 0.00 36.98 5.34
2451 2991 4.415596 TGAATAAGCCAGTTTGGAACCAT 58.584 39.130 0.00 0.00 40.96 3.55
2535 3076 7.740805 AGGGCTTTACTTATTTCCTGATCTAG 58.259 38.462 0.00 0.00 0.00 2.43
2639 3180 5.248870 AGGTGCGACAATTAATTTGGATC 57.751 39.130 0.00 0.00 39.80 3.36
2667 3208 4.210537 GTCGCAGCTTTAGTACAAAGTTGA 59.789 41.667 24.54 11.75 39.74 3.18
2706 3464 8.259411 TCGCATAACTAACTTTTTATACTCCCA 58.741 33.333 0.00 0.00 0.00 4.37
2726 3484 9.811995 ATTGTCTTTGTACTAGTAAATCGCATA 57.188 29.630 3.61 0.00 0.00 3.14
2818 4385 1.079474 TTCGCACTTCGCAGGCATA 60.079 52.632 0.00 0.00 42.60 3.14
2924 4493 1.418637 ACTCGGCTTGTTAAACCTCCA 59.581 47.619 0.00 0.00 0.00 3.86
3003 4573 0.235926 GTTTCTTGTGCACCGAGCTC 59.764 55.000 15.69 2.73 45.94 4.09
3061 4631 2.293955 TGTGGTCATGCTCACAAATGTG 59.706 45.455 15.34 7.22 46.91 3.21
3065 4635 1.948834 CTGTGTGGTCATGCTCACAAA 59.051 47.619 18.07 13.81 44.19 2.83
3087 4657 6.680874 AAACCACTAAATTCGTACAACACA 57.319 33.333 0.00 0.00 0.00 3.72
3122 4692 4.782156 AGAAGGGAACATGATCAGAGTCTT 59.218 41.667 0.00 2.83 0.00 3.01
3136 4706 6.777213 TCATAAGAGTCTACAGAAGGGAAC 57.223 41.667 0.00 0.00 0.00 3.62
3185 4755 6.867550 TGTCTATATATATGTGGCAGTCTGC 58.132 40.000 16.93 16.93 44.08 4.26
3254 4824 4.748277 TGTACAGTAGGGGATTAGCAAC 57.252 45.455 0.00 0.00 0.00 4.17
3370 4940 6.239217 TGAGAAATATAGCTGGCTCAAAGA 57.761 37.500 0.00 0.00 30.26 2.52
3416 4988 1.611673 CGGCTCCAATGTTCAGGTTCT 60.612 52.381 0.00 0.00 0.00 3.01
3435 5007 1.995484 CTCATCTGGCGCCATAATACG 59.005 52.381 32.87 17.79 0.00 3.06
3450 5022 6.934645 TCCCGTTAACAATTGGATATCTCATC 59.065 38.462 10.83 0.00 0.00 2.92
3848 5455 5.922053 TGTTCCATCATACTCCATCAAGAG 58.078 41.667 0.00 0.00 39.91 2.85
3866 5473 4.932146 AGCTGTTACACACAAATTGTTCC 58.068 39.130 0.00 0.00 35.67 3.62
3920 5527 9.860650 ACTATTTACAAATATGTATTCTGCCCA 57.139 29.630 0.00 0.00 41.51 5.36
3963 5570 1.534697 GGTGGTCTTTGGTGGTCCA 59.465 57.895 0.00 0.00 42.66 4.02
3964 5571 1.599797 CGGTGGTCTTTGGTGGTCC 60.600 63.158 0.00 0.00 0.00 4.46
3965 5572 1.599797 CCGGTGGTCTTTGGTGGTC 60.600 63.158 0.00 0.00 0.00 4.02
4083 5690 9.979578 AGAAAATGTGAATGCTACAAACATTTA 57.020 25.926 11.26 0.00 45.75 1.40
4085 5692 8.891671 AAGAAAATGTGAATGCTACAAACATT 57.108 26.923 0.00 0.00 41.85 2.71
4184 5791 4.839668 ATGAGTACATCTCTAAGCCGAC 57.160 45.455 0.00 0.00 43.13 4.79
4196 5803 3.134804 GGAGTTGCACCCTATGAGTACAT 59.865 47.826 0.00 0.00 40.16 2.29
4201 5808 2.102252 GAGAGGAGTTGCACCCTATGAG 59.898 54.545 1.35 0.00 31.84 2.90
4202 5809 2.111384 GAGAGGAGTTGCACCCTATGA 58.889 52.381 1.35 0.00 31.84 2.15
4203 5810 1.139853 GGAGAGGAGTTGCACCCTATG 59.860 57.143 1.35 0.00 31.84 2.23
4218 5826 3.627577 CCCAACCATCGTAATTTGGAGAG 59.372 47.826 0.82 0.00 40.97 3.20
4219 5827 3.264706 TCCCAACCATCGTAATTTGGAGA 59.735 43.478 0.82 4.12 40.97 3.71
4220 5828 3.616219 TCCCAACCATCGTAATTTGGAG 58.384 45.455 0.82 0.00 40.97 3.86
4267 5875 2.109126 GTGGATGGCCTGCGAAGTC 61.109 63.158 3.32 0.00 34.31 3.01
4313 5980 3.071747 TCTTACATTTGCCCCCAAAAACC 59.928 43.478 0.00 0.00 43.58 3.27
4318 5985 5.199982 TCTTATCTTACATTTGCCCCCAA 57.800 39.130 0.00 0.00 0.00 4.12
4322 5989 5.385198 TCCCATCTTATCTTACATTTGCCC 58.615 41.667 0.00 0.00 0.00 5.36
4351 6018 1.086696 CATGTCCTTGGGCGTACAAG 58.913 55.000 12.42 12.42 45.71 3.16
4374 6041 1.142465 CATGTCAAGGATGCCTAGGCT 59.858 52.381 33.07 19.27 42.51 4.58
4388 6055 3.063316 CACGTGCGAATTTATCCATGTCA 59.937 43.478 0.82 0.00 30.67 3.58
4419 6086 0.482446 ACCAACCAAGGCCATCTGAA 59.518 50.000 5.01 0.00 0.00 3.02
4448 6115 2.106566 TCAACCCAAGCTCTTTTTGCA 58.893 42.857 0.00 0.00 0.00 4.08
4451 6118 4.444733 CCCAAATCAACCCAAGCTCTTTTT 60.445 41.667 0.00 0.00 0.00 1.94
4452 6119 3.071457 CCCAAATCAACCCAAGCTCTTTT 59.929 43.478 0.00 0.00 0.00 2.27
4484 6151 6.505048 AATATCACCATGTCCTCTTCATCA 57.495 37.500 0.00 0.00 0.00 3.07
4501 6168 7.774625 TGATGGAAGTGCACTCATAAAATATCA 59.225 33.333 21.95 16.73 0.00 2.15
4503 6170 7.013655 GGTGATGGAAGTGCACTCATAAAATAT 59.986 37.037 21.95 0.00 33.25 1.28
4505 6172 5.126061 GGTGATGGAAGTGCACTCATAAAAT 59.874 40.000 21.95 8.36 33.25 1.82
4529 6196 1.008995 CCTTTGTCGGTTGCCAACG 60.009 57.895 0.74 0.00 0.00 4.10
4539 6206 1.160137 CAGAAAGAGGCCCTTTGTCG 58.840 55.000 19.97 9.85 44.63 4.35
4541 6208 0.540597 GCCAGAAAGAGGCCCTTTGT 60.541 55.000 19.97 14.76 44.63 2.83
4586 6253 0.616111 AGGGAGCGATGTCTTCTGGT 60.616 55.000 0.00 0.00 0.00 4.00
4590 6257 0.755686 ATGGAGGGAGCGATGTCTTC 59.244 55.000 0.00 0.00 0.00 2.87
4625 6292 2.794103 TGGATGGTGTCATTCTTGTGG 58.206 47.619 0.00 0.00 32.98 4.17
4685 6352 4.344679 TCAATTGTGAGCCCAGAATTTGTT 59.655 37.500 5.13 0.00 41.66 2.83
4707 6374 5.931146 CCTGATAGTATTCAAGGATGTGCTC 59.069 44.000 2.69 0.00 0.00 4.26
4728 6395 1.003812 TCGTAATCCAACCCCAACCTG 59.996 52.381 0.00 0.00 0.00 4.00
4731 6398 2.629051 CTCTCGTAATCCAACCCCAAC 58.371 52.381 0.00 0.00 0.00 3.77
4734 6401 1.138464 GACCTCTCGTAATCCAACCCC 59.862 57.143 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.