Multiple sequence alignment - TraesCS5B01G504800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G504800 chr5B 100.000 2390 0 0 1 2390 670799274 670796885 0.000000e+00 4414.0
1 TraesCS5B01G504800 chr5B 96.033 857 23 3 1 847 7027950 7028805 0.000000e+00 1384.0
2 TraesCS5B01G504800 chr5B 95.558 833 26 3 27 849 377343098 377342267 0.000000e+00 1323.0
3 TraesCS5B01G504800 chr5B 95.921 760 20 6 99 848 64726396 64727154 0.000000e+00 1221.0
4 TraesCS5B01G504800 chr5B 82.064 591 63 24 852 1408 670694847 670694266 4.650000e-127 464.0
5 TraesCS5B01G504800 chr5B 82.143 476 62 14 852 1309 670716941 670716471 1.040000e-103 387.0
6 TraesCS5B01G504800 chr7B 95.804 858 25 3 1 848 695289637 695290493 0.000000e+00 1375.0
7 TraesCS5B01G504800 chr7B 95.416 829 26 4 27 845 684941422 684942248 0.000000e+00 1310.0
8 TraesCS5B01G504800 chr6B 95.470 861 28 3 1 851 497220051 497220910 0.000000e+00 1363.0
9 TraesCS5B01G504800 chr6B 82.377 244 27 6 2143 2375 120801321 120801083 5.210000e-47 198.0
10 TraesCS5B01G504800 chr6B 87.037 54 3 3 2066 2118 48558240 48558290 9.230000e-05 58.4
11 TraesCS5B01G504800 chr1B 95.571 858 27 3 1 848 66281028 66281884 0.000000e+00 1363.0
12 TraesCS5B01G504800 chr1B 95.476 862 25 5 1 849 565940969 565940109 0.000000e+00 1363.0
13 TraesCS5B01G504800 chr1B 96.894 161 4 1 1 161 329301450 329301291 3.920000e-68 268.0
14 TraesCS5B01G504800 chr2B 95.343 859 28 4 1 849 233043278 233042422 0.000000e+00 1354.0
15 TraesCS5B01G504800 chr2B 95.000 860 32 3 1 850 94094923 94094065 0.000000e+00 1339.0
16 TraesCS5B01G504800 chr2B 88.259 247 7 1 4 250 701767156 701766932 2.340000e-70 276.0
17 TraesCS5B01G504800 chr3B 96.158 833 21 3 27 849 224282825 224283656 0.000000e+00 1351.0
18 TraesCS5B01G504800 chr3B 95.511 802 25 4 59 850 734988903 734989703 0.000000e+00 1271.0
19 TraesCS5B01G504800 chr3B 93.993 849 26 4 1 848 56338217 56339041 0.000000e+00 1262.0
20 TraesCS5B01G504800 chr3B 78.516 256 38 11 2129 2376 518997996 518998242 4.110000e-33 152.0
21 TraesCS5B01G504800 chr5D 80.376 1065 95 48 852 1893 531462799 531461826 0.000000e+00 704.0
22 TraesCS5B01G504800 chr5D 85.036 695 43 27 846 1507 531476621 531475955 0.000000e+00 651.0
23 TraesCS5B01G504800 chr5D 82.111 559 57 19 885 1408 531412236 531411686 2.820000e-119 438.0
24 TraesCS5B01G504800 chr5D 81.092 476 59 19 852 1309 531445257 531444795 3.780000e-93 351.0
25 TraesCS5B01G504800 chr5D 82.731 249 33 8 2131 2370 103602708 103602461 1.860000e-51 213.0
26 TraesCS5B01G504800 chr5D 82.474 194 22 3 995 1188 531416326 531416145 2.460000e-35 159.0
27 TraesCS5B01G504800 chr5D 88.596 114 9 3 1924 2034 531461829 531461717 4.140000e-28 135.0
28 TraesCS5B01G504800 chr4A 81.540 818 73 33 865 1652 640921977 640922746 9.450000e-169 603.0
29 TraesCS5B01G504800 chr4A 86.729 535 26 14 846 1344 640916338 640916863 9.650000e-154 553.0
30 TraesCS5B01G504800 chr4A 85.401 411 39 10 995 1390 641000223 641000627 7.950000e-110 407.0
31 TraesCS5B01G504800 chr4A 81.304 460 56 17 866 1297 640944730 640945187 1.760000e-91 346.0
32 TraesCS5B01G504800 chr6D 80.347 346 37 20 2060 2390 50674281 50674610 1.430000e-57 233.0
33 TraesCS5B01G504800 chr6D 76.991 113 16 6 2063 2173 26360468 26360572 3.320000e-04 56.5
34 TraesCS5B01G504800 chr5A 80.368 326 47 8 2064 2387 34709872 34710182 5.140000e-57 231.0
35 TraesCS5B01G504800 chr5A 78.134 343 45 12 2060 2387 94800250 94800577 8.720000e-45 191.0
36 TraesCS5B01G504800 chr5A 80.682 264 34 14 2106 2359 111608319 111608063 3.140000e-44 189.0
37 TraesCS5B01G504800 chr3D 79.701 335 56 9 2060 2390 591608992 591608666 5.140000e-57 231.0
38 TraesCS5B01G504800 chr3D 79.341 334 53 10 2060 2390 485140017 485140337 1.110000e-53 220.0
39 TraesCS5B01G504800 chr3A 77.083 336 55 12 2060 2386 722498565 722498887 8.780000e-40 174.0
40 TraesCS5B01G504800 chr2D 84.932 146 16 6 2248 2390 537221944 537221802 2.480000e-30 143.0
41 TraesCS5B01G504800 chr2D 90.196 51 4 1 2070 2119 537222177 537222127 5.510000e-07 65.8
42 TraesCS5B01G504800 chr2D 77.570 107 18 6 2067 2173 484475309 484475209 2.570000e-05 60.2
43 TraesCS5B01G504800 chr7A 100.000 30 0 0 2065 2094 8598402 8598431 3.320000e-04 56.5
44 TraesCS5B01G504800 chr4B 90.698 43 2 2 2067 2109 620947623 620947663 3.320000e-04 56.5
45 TraesCS5B01G504800 chr7D 100.000 29 0 0 2065 2093 7798806 7798834 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G504800 chr5B 670796885 670799274 2389 True 4414.0 4414 100.0000 1 2390 1 chr5B.!!$R4 2389
1 TraesCS5B01G504800 chr5B 7027950 7028805 855 False 1384.0 1384 96.0330 1 847 1 chr5B.!!$F1 846
2 TraesCS5B01G504800 chr5B 377342267 377343098 831 True 1323.0 1323 95.5580 27 849 1 chr5B.!!$R1 822
3 TraesCS5B01G504800 chr5B 64726396 64727154 758 False 1221.0 1221 95.9210 99 848 1 chr5B.!!$F2 749
4 TraesCS5B01G504800 chr5B 670694266 670694847 581 True 464.0 464 82.0640 852 1408 1 chr5B.!!$R2 556
5 TraesCS5B01G504800 chr7B 695289637 695290493 856 False 1375.0 1375 95.8040 1 848 1 chr7B.!!$F2 847
6 TraesCS5B01G504800 chr7B 684941422 684942248 826 False 1310.0 1310 95.4160 27 845 1 chr7B.!!$F1 818
7 TraesCS5B01G504800 chr6B 497220051 497220910 859 False 1363.0 1363 95.4700 1 851 1 chr6B.!!$F2 850
8 TraesCS5B01G504800 chr1B 66281028 66281884 856 False 1363.0 1363 95.5710 1 848 1 chr1B.!!$F1 847
9 TraesCS5B01G504800 chr1B 565940109 565940969 860 True 1363.0 1363 95.4760 1 849 1 chr1B.!!$R2 848
10 TraesCS5B01G504800 chr2B 233042422 233043278 856 True 1354.0 1354 95.3430 1 849 1 chr2B.!!$R2 848
11 TraesCS5B01G504800 chr2B 94094065 94094923 858 True 1339.0 1339 95.0000 1 850 1 chr2B.!!$R1 849
12 TraesCS5B01G504800 chr3B 224282825 224283656 831 False 1351.0 1351 96.1580 27 849 1 chr3B.!!$F2 822
13 TraesCS5B01G504800 chr3B 734988903 734989703 800 False 1271.0 1271 95.5110 59 850 1 chr3B.!!$F4 791
14 TraesCS5B01G504800 chr3B 56338217 56339041 824 False 1262.0 1262 93.9930 1 848 1 chr3B.!!$F1 847
15 TraesCS5B01G504800 chr5D 531475955 531476621 666 True 651.0 651 85.0360 846 1507 1 chr5D.!!$R3 661
16 TraesCS5B01G504800 chr5D 531461717 531462799 1082 True 419.5 704 84.4860 852 2034 2 chr5D.!!$R5 1182
17 TraesCS5B01G504800 chr5D 531411686 531416326 4640 True 298.5 438 82.2925 885 1408 2 chr5D.!!$R4 523
18 TraesCS5B01G504800 chr4A 640921977 640922746 769 False 603.0 603 81.5400 865 1652 1 chr4A.!!$F2 787
19 TraesCS5B01G504800 chr4A 640916338 640916863 525 False 553.0 553 86.7290 846 1344 1 chr4A.!!$F1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 4140 0.71167 CGCACGCGCTTACTCTTTTA 59.288 50.0 5.73 0.0 35.3 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 5604 0.035458 AACCCAGCTTCGACTTCAGG 59.965 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 180 4.100084 CCCGATGCAGCAGGACCA 62.100 66.667 13.25 0.00 0.00 4.02
205 246 1.692749 GGGGTAGCAGGATGGGTCA 60.693 63.158 0.00 0.00 35.86 4.02
215 256 1.639635 GGATGGGTCAGTGGATGCCT 61.640 60.000 0.00 0.00 0.00 4.75
350 392 1.542375 AGGTCTTGGATGCTGGGGT 60.542 57.895 0.00 0.00 0.00 4.95
770 816 3.568743 GTGCGTGTGTTGCGGTGA 61.569 61.111 0.00 0.00 34.24 4.02
868 914 2.201436 CTCTCCGCTACGCCGCATAT 62.201 60.000 0.00 0.00 0.00 1.78
926 4134 2.805353 CTCACGCACGCGCTTACT 60.805 61.111 12.02 0.00 44.19 2.24
927 4135 2.778997 CTCACGCACGCGCTTACTC 61.779 63.158 12.02 0.00 44.19 2.59
928 4136 2.805353 CACGCACGCGCTTACTCT 60.805 61.111 12.02 0.00 44.19 3.24
929 4137 2.049433 ACGCACGCGCTTACTCTT 60.049 55.556 12.02 0.00 44.19 2.85
930 4138 1.663702 ACGCACGCGCTTACTCTTT 60.664 52.632 12.02 0.00 44.19 2.52
931 4139 1.219522 ACGCACGCGCTTACTCTTTT 61.220 50.000 12.02 0.00 44.19 2.27
932 4140 0.711670 CGCACGCGCTTACTCTTTTA 59.288 50.000 5.73 0.00 35.30 1.52
933 4141 1.323534 CGCACGCGCTTACTCTTTTAT 59.676 47.619 5.73 0.00 35.30 1.40
988 4224 1.216444 CGAGCAGAGTTAGCCAGCA 59.784 57.895 0.00 0.00 0.00 4.41
1053 4300 0.319641 GGGAGAATACGATGGCGACC 60.320 60.000 0.00 0.00 41.64 4.79
1408 4682 0.246635 GGCAGGTCGTGAGCTAGAAA 59.753 55.000 0.63 0.00 37.39 2.52
1409 4683 1.134670 GGCAGGTCGTGAGCTAGAAAT 60.135 52.381 0.63 0.00 37.39 2.17
1410 4684 2.100916 GGCAGGTCGTGAGCTAGAAATA 59.899 50.000 0.63 0.00 37.39 1.40
1411 4685 3.376540 GCAGGTCGTGAGCTAGAAATAG 58.623 50.000 0.63 0.00 37.39 1.73
1413 4687 4.440250 GCAGGTCGTGAGCTAGAAATAGAA 60.440 45.833 0.63 0.00 37.39 2.10
1414 4688 5.737635 GCAGGTCGTGAGCTAGAAATAGAAT 60.738 44.000 0.63 0.00 37.39 2.40
1415 4689 6.515200 GCAGGTCGTGAGCTAGAAATAGAATA 60.515 42.308 0.63 0.00 37.39 1.75
1416 4690 7.081349 CAGGTCGTGAGCTAGAAATAGAATAG 58.919 42.308 0.63 0.00 37.39 1.73
1420 4694 9.176181 GTCGTGAGCTAGAAATAGAATAGAAAG 57.824 37.037 0.00 0.00 0.00 2.62
1422 4696 9.737427 CGTGAGCTAGAAATAGAATAGAAAGAA 57.263 33.333 0.00 0.00 0.00 2.52
1431 4706 8.675040 AAATAGAATAGAAAGAAAGCAAACGC 57.325 30.769 0.00 0.00 0.00 4.84
1454 4729 1.662044 GCCCACTTGTTGGCTTCTG 59.338 57.895 8.40 0.00 45.37 3.02
1481 4762 3.703286 ACTTTGGGACGCTGTAAAAAC 57.297 42.857 0.00 0.00 0.00 2.43
1570 4871 4.065088 GAGATTCAGTGGTGTTAACTGCA 58.935 43.478 7.22 0.00 43.88 4.41
1586 4887 0.112995 TGCATTTGGAGAAGCTGGGT 59.887 50.000 0.00 0.00 0.00 4.51
1613 4914 7.410407 GCCACTAACACGCAAAGATTTTTATTC 60.410 37.037 0.00 0.00 0.00 1.75
1637 4940 5.461526 GGTTGGCTCTTTTGTACAGAATTC 58.538 41.667 0.00 0.00 0.00 2.17
1661 4969 2.845797 TCTGATCCCAGATCAGGCC 58.154 57.895 26.35 0.00 44.01 5.19
1665 4973 2.408880 GATCCCAGATCAGGCCTGCC 62.409 65.000 28.91 20.87 0.00 4.85
1673 4981 1.826720 GATCAGGCCTGCCATTCAAAA 59.173 47.619 28.91 7.75 38.92 2.44
1674 4982 1.714541 TCAGGCCTGCCATTCAAAAA 58.285 45.000 28.91 3.28 38.92 1.94
1675 4983 1.344114 TCAGGCCTGCCATTCAAAAAC 59.656 47.619 28.91 0.00 38.92 2.43
1679 4987 1.866601 GCCTGCCATTCAAAAACACAC 59.133 47.619 0.00 0.00 0.00 3.82
1686 4994 1.997669 TTCAAAAACACACGTTGCCC 58.002 45.000 0.00 0.00 34.86 5.36
1702 5010 2.311463 TGCCCTGCTATCTCTGTCTAC 58.689 52.381 0.00 0.00 0.00 2.59
1703 5011 1.268352 GCCCTGCTATCTCTGTCTACG 59.732 57.143 0.00 0.00 0.00 3.51
1704 5012 2.577700 CCCTGCTATCTCTGTCTACGT 58.422 52.381 0.00 0.00 0.00 3.57
1705 5013 3.741249 CCCTGCTATCTCTGTCTACGTA 58.259 50.000 0.00 0.00 0.00 3.57
1706 5014 3.499157 CCCTGCTATCTCTGTCTACGTAC 59.501 52.174 0.00 0.00 0.00 3.67
1707 5015 4.127907 CCTGCTATCTCTGTCTACGTACA 58.872 47.826 0.00 0.00 0.00 2.90
1708 5016 4.575236 CCTGCTATCTCTGTCTACGTACAA 59.425 45.833 0.00 0.00 0.00 2.41
1709 5017 5.277586 CCTGCTATCTCTGTCTACGTACAAG 60.278 48.000 0.00 0.00 0.00 3.16
1710 5018 5.425630 TGCTATCTCTGTCTACGTACAAGA 58.574 41.667 0.00 0.00 0.00 3.02
1711 5019 5.524281 TGCTATCTCTGTCTACGTACAAGAG 59.476 44.000 14.23 14.23 0.00 2.85
1712 5020 5.524646 GCTATCTCTGTCTACGTACAAGAGT 59.475 44.000 17.56 11.20 31.84 3.24
1713 5021 6.700960 GCTATCTCTGTCTACGTACAAGAGTA 59.299 42.308 17.56 11.55 31.84 2.59
1714 5022 7.224362 GCTATCTCTGTCTACGTACAAGAGTAA 59.776 40.741 17.56 10.23 31.84 2.24
1715 5023 7.918536 ATCTCTGTCTACGTACAAGAGTAAA 57.081 36.000 17.56 5.91 31.84 2.01
1716 5024 7.734924 TCTCTGTCTACGTACAAGAGTAAAA 57.265 36.000 17.56 3.47 31.84 1.52
1717 5025 7.804712 TCTCTGTCTACGTACAAGAGTAAAAG 58.195 38.462 17.56 0.00 31.84 2.27
1718 5026 7.443575 TCTCTGTCTACGTACAAGAGTAAAAGT 59.556 37.037 17.56 0.00 31.84 2.66
1727 5035 7.091443 CGTACAAGAGTAAAAGTGGAAGAGAT 58.909 38.462 0.00 0.00 30.67 2.75
1746 5054 3.322254 AGATAACGGACCACATCCTCATC 59.678 47.826 0.00 0.00 46.69 2.92
1761 5069 4.040047 TCCTCATCCAGTCCAATGTGTAT 58.960 43.478 0.00 0.00 0.00 2.29
1762 5070 4.132336 CCTCATCCAGTCCAATGTGTATG 58.868 47.826 0.00 0.00 0.00 2.39
1766 5074 4.406648 TCCAGTCCAATGTGTATGCTAG 57.593 45.455 0.00 0.00 0.00 3.42
1767 5075 4.030216 TCCAGTCCAATGTGTATGCTAGA 58.970 43.478 0.00 0.00 0.00 2.43
1768 5076 4.100035 TCCAGTCCAATGTGTATGCTAGAG 59.900 45.833 0.00 0.00 0.00 2.43
1769 5077 3.806521 CAGTCCAATGTGTATGCTAGAGC 59.193 47.826 0.00 0.00 42.50 4.09
1770 5078 3.708631 AGTCCAATGTGTATGCTAGAGCT 59.291 43.478 2.72 0.00 42.66 4.09
1792 5100 3.614092 AGACAGACTTGGCATATGGTTG 58.386 45.455 4.56 0.00 33.45 3.77
1803 5111 4.307443 GCATATGGTTGCCTTCTTAACC 57.693 45.455 4.56 0.00 45.15 2.85
1804 5112 3.068165 GCATATGGTTGCCTTCTTAACCC 59.932 47.826 4.56 0.00 44.48 4.11
1805 5113 2.990740 ATGGTTGCCTTCTTAACCCA 57.009 45.000 0.00 0.00 44.48 4.51
1806 5114 2.990740 TGGTTGCCTTCTTAACCCAT 57.009 45.000 0.00 0.00 44.48 4.00
1807 5115 3.252554 TGGTTGCCTTCTTAACCCATT 57.747 42.857 0.00 0.00 44.48 3.16
1808 5116 3.582164 TGGTTGCCTTCTTAACCCATTT 58.418 40.909 0.00 0.00 44.48 2.32
1809 5117 3.576550 TGGTTGCCTTCTTAACCCATTTC 59.423 43.478 0.00 0.00 44.48 2.17
1810 5118 3.056107 GGTTGCCTTCTTAACCCATTTCC 60.056 47.826 0.00 0.00 40.31 3.13
1811 5119 2.815158 TGCCTTCTTAACCCATTTCCC 58.185 47.619 0.00 0.00 0.00 3.97
1812 5120 2.381961 TGCCTTCTTAACCCATTTCCCT 59.618 45.455 0.00 0.00 0.00 4.20
1817 5125 2.093128 TCTTAACCCATTTCCCTCTCGC 60.093 50.000 0.00 0.00 0.00 5.03
1826 5134 0.104855 TTCCCTCTCGCAATGATCCG 59.895 55.000 0.00 0.00 0.00 4.18
1828 5136 0.598680 CCCTCTCGCAATGATCCGAC 60.599 60.000 0.00 0.00 0.00 4.79
1840 5148 1.209504 TGATCCGACCATCCAAACTCC 59.790 52.381 0.00 0.00 0.00 3.85
1844 5152 0.734889 CGACCATCCAAACTCCATGC 59.265 55.000 0.00 0.00 0.00 4.06
1853 5161 2.513753 CAAACTCCATGCACACCCTTA 58.486 47.619 0.00 0.00 0.00 2.69
1858 5166 3.010584 ACTCCATGCACACCCTTAAGAAT 59.989 43.478 3.36 0.00 0.00 2.40
1878 5186 5.950549 AGAATCGGTGGTTAAGAACTAGAGA 59.049 40.000 0.00 0.00 0.00 3.10
1884 5192 5.336610 GGTGGTTAAGAACTAGAGAGGTGAC 60.337 48.000 0.00 0.00 0.00 3.67
1893 5201 3.596956 ACTAGAGAGGTGACCCCTAAAGA 59.403 47.826 0.00 0.00 46.51 2.52
1894 5202 3.108847 AGAGAGGTGACCCCTAAAGAG 57.891 52.381 0.00 0.00 46.51 2.85
1895 5203 2.655407 AGAGAGGTGACCCCTAAAGAGA 59.345 50.000 0.00 0.00 46.51 3.10
1896 5204 3.077695 AGAGAGGTGACCCCTAAAGAGAA 59.922 47.826 0.00 0.00 46.51 2.87
1897 5205 3.174779 AGAGGTGACCCCTAAAGAGAAC 58.825 50.000 0.00 0.00 46.51 3.01
1898 5206 2.904434 GAGGTGACCCCTAAAGAGAACA 59.096 50.000 0.00 0.00 46.51 3.18
1899 5207 3.519913 GAGGTGACCCCTAAAGAGAACAT 59.480 47.826 0.00 0.00 46.51 2.71
1900 5208 3.916989 AGGTGACCCCTAAAGAGAACATT 59.083 43.478 0.00 0.00 43.87 2.71
1901 5209 4.354087 AGGTGACCCCTAAAGAGAACATTT 59.646 41.667 0.00 0.00 43.87 2.32
1902 5210 4.700692 GGTGACCCCTAAAGAGAACATTTC 59.299 45.833 0.00 0.00 0.00 2.17
1903 5211 4.392138 GTGACCCCTAAAGAGAACATTTCG 59.608 45.833 0.00 0.00 34.02 3.46
1904 5212 3.344515 ACCCCTAAAGAGAACATTTCGC 58.655 45.455 0.00 0.00 34.02 4.70
1905 5213 3.244770 ACCCCTAAAGAGAACATTTCGCA 60.245 43.478 0.00 0.00 34.02 5.10
1906 5214 3.756434 CCCCTAAAGAGAACATTTCGCAA 59.244 43.478 0.00 0.00 34.02 4.85
1907 5215 4.217550 CCCCTAAAGAGAACATTTCGCAAA 59.782 41.667 0.00 0.00 34.02 3.68
1908 5216 5.278758 CCCCTAAAGAGAACATTTCGCAAAA 60.279 40.000 0.00 0.00 34.02 2.44
1909 5217 6.212955 CCCTAAAGAGAACATTTCGCAAAAA 58.787 36.000 0.00 0.00 34.02 1.94
1910 5218 6.363357 CCCTAAAGAGAACATTTCGCAAAAAG 59.637 38.462 0.00 0.00 34.02 2.27
1911 5219 7.138736 CCTAAAGAGAACATTTCGCAAAAAGA 58.861 34.615 0.00 0.00 34.02 2.52
1912 5220 7.647715 CCTAAAGAGAACATTTCGCAAAAAGAA 59.352 33.333 0.00 0.00 34.02 2.52
1913 5221 7.455331 AAAGAGAACATTTCGCAAAAAGAAG 57.545 32.000 0.00 0.00 34.02 2.85
1914 5222 5.523369 AGAGAACATTTCGCAAAAAGAAGG 58.477 37.500 0.00 0.00 34.02 3.46
1915 5223 5.299279 AGAGAACATTTCGCAAAAAGAAGGA 59.701 36.000 0.00 0.00 34.02 3.36
1916 5224 5.901552 AGAACATTTCGCAAAAAGAAGGAA 58.098 33.333 0.00 0.00 34.02 3.36
1917 5225 5.979517 AGAACATTTCGCAAAAAGAAGGAAG 59.020 36.000 0.00 0.00 34.02 3.46
1918 5226 5.514274 ACATTTCGCAAAAAGAAGGAAGA 57.486 34.783 0.00 0.00 0.00 2.87
1919 5227 5.901552 ACATTTCGCAAAAAGAAGGAAGAA 58.098 33.333 0.00 0.00 0.00 2.52
1920 5228 6.337356 ACATTTCGCAAAAAGAAGGAAGAAA 58.663 32.000 0.00 0.00 0.00 2.52
1921 5229 6.816140 ACATTTCGCAAAAAGAAGGAAGAAAA 59.184 30.769 0.00 0.00 31.47 2.29
1922 5230 7.333174 ACATTTCGCAAAAAGAAGGAAGAAAAA 59.667 29.630 0.00 0.00 31.47 1.94
1992 5300 7.112779 CAGTTTCCTGGAGTTTATGGAATAGT 58.887 38.462 0.00 0.00 38.24 2.12
1993 5301 7.066284 CAGTTTCCTGGAGTTTATGGAATAGTG 59.934 40.741 0.00 0.00 38.24 2.74
1994 5302 5.630415 TCCTGGAGTTTATGGAATAGTGG 57.370 43.478 0.00 0.00 0.00 4.00
1995 5303 5.285401 TCCTGGAGTTTATGGAATAGTGGA 58.715 41.667 0.00 0.00 0.00 4.02
1997 5305 5.823045 CCTGGAGTTTATGGAATAGTGGAAC 59.177 44.000 0.00 0.00 0.00 3.62
2001 5309 6.002653 AGTTTATGGAATAGTGGAACCTCC 57.997 41.667 0.00 0.00 37.80 4.30
2034 5344 2.747446 GACAGGTGTGTTTGACTTGTGT 59.253 45.455 0.00 0.00 36.88 3.72
2035 5345 2.487762 ACAGGTGTGTTTGACTTGTGTG 59.512 45.455 0.00 0.00 30.30 3.82
2036 5346 1.472480 AGGTGTGTTTGACTTGTGTGC 59.528 47.619 0.00 0.00 0.00 4.57
2037 5347 1.472480 GGTGTGTTTGACTTGTGTGCT 59.528 47.619 0.00 0.00 0.00 4.40
2038 5348 2.477863 GGTGTGTTTGACTTGTGTGCTC 60.478 50.000 0.00 0.00 0.00 4.26
2039 5349 2.420022 GTGTGTTTGACTTGTGTGCTCT 59.580 45.455 0.00 0.00 0.00 4.09
2040 5350 3.081061 TGTGTTTGACTTGTGTGCTCTT 58.919 40.909 0.00 0.00 0.00 2.85
2041 5351 3.126858 TGTGTTTGACTTGTGTGCTCTTC 59.873 43.478 0.00 0.00 0.00 2.87
2042 5352 2.351418 TGTTTGACTTGTGTGCTCTTCG 59.649 45.455 0.00 0.00 0.00 3.79
2043 5353 2.595124 TTGACTTGTGTGCTCTTCGA 57.405 45.000 0.00 0.00 0.00 3.71
2044 5354 2.595124 TGACTTGTGTGCTCTTCGAA 57.405 45.000 0.00 0.00 0.00 3.71
2045 5355 2.899976 TGACTTGTGTGCTCTTCGAAA 58.100 42.857 0.00 0.00 0.00 3.46
2046 5356 2.607635 TGACTTGTGTGCTCTTCGAAAC 59.392 45.455 0.00 0.00 0.00 2.78
2047 5357 2.607635 GACTTGTGTGCTCTTCGAAACA 59.392 45.455 0.00 0.00 0.00 2.83
2048 5358 2.609459 ACTTGTGTGCTCTTCGAAACAG 59.391 45.455 0.00 0.00 0.00 3.16
2049 5359 1.581934 TGTGTGCTCTTCGAAACAGG 58.418 50.000 0.00 0.00 0.00 4.00
2050 5360 1.134521 TGTGTGCTCTTCGAAACAGGT 60.135 47.619 0.00 0.00 0.00 4.00
2051 5361 1.940613 GTGTGCTCTTCGAAACAGGTT 59.059 47.619 0.00 0.00 0.00 3.50
2052 5362 2.354821 GTGTGCTCTTCGAAACAGGTTT 59.645 45.455 0.00 0.00 35.14 3.27
2053 5363 3.013921 TGTGCTCTTCGAAACAGGTTTT 58.986 40.909 0.00 0.00 32.11 2.43
2054 5364 3.064820 TGTGCTCTTCGAAACAGGTTTTC 59.935 43.478 0.00 0.00 32.11 2.29
2059 5369 3.345087 CGAAACAGGTTTTCGCTCG 57.655 52.632 6.24 0.00 43.52 5.03
2060 5370 0.110823 CGAAACAGGTTTTCGCTCGG 60.111 55.000 6.24 0.00 43.52 4.63
2061 5371 0.942252 GAAACAGGTTTTCGCTCGGT 59.058 50.000 0.00 0.00 32.11 4.69
2062 5372 0.661020 AAACAGGTTTTCGCTCGGTG 59.339 50.000 0.00 0.00 0.00 4.94
2063 5373 1.782028 AACAGGTTTTCGCTCGGTGC 61.782 55.000 0.00 0.00 38.57 5.01
2072 5382 4.072088 GCTCGGTGCGGACGTTTG 62.072 66.667 0.00 0.00 0.00 2.93
2073 5383 3.411351 CTCGGTGCGGACGTTTGG 61.411 66.667 0.00 0.00 0.00 3.28
2074 5384 4.224274 TCGGTGCGGACGTTTGGT 62.224 61.111 0.00 0.00 0.00 3.67
2075 5385 3.273834 CGGTGCGGACGTTTGGTT 61.274 61.111 0.00 0.00 0.00 3.67
2076 5386 2.635338 GGTGCGGACGTTTGGTTC 59.365 61.111 0.00 0.00 0.00 3.62
2077 5387 2.635338 GTGCGGACGTTTGGTTCC 59.365 61.111 0.00 0.00 0.00 3.62
2078 5388 1.890510 GTGCGGACGTTTGGTTCCT 60.891 57.895 0.00 0.00 0.00 3.36
2079 5389 1.890041 TGCGGACGTTTGGTTCCTG 60.890 57.895 0.00 0.00 0.00 3.86
2080 5390 2.613506 GCGGACGTTTGGTTCCTGG 61.614 63.158 0.00 0.00 0.00 4.45
2081 5391 1.964373 CGGACGTTTGGTTCCTGGG 60.964 63.158 0.00 0.00 0.00 4.45
2082 5392 1.149854 GGACGTTTGGTTCCTGGGT 59.850 57.895 0.00 0.00 0.00 4.51
2083 5393 1.170290 GGACGTTTGGTTCCTGGGTG 61.170 60.000 0.00 0.00 0.00 4.61
2084 5394 0.464916 GACGTTTGGTTCCTGGGTGT 60.465 55.000 0.00 0.00 0.00 4.16
2085 5395 0.838608 ACGTTTGGTTCCTGGGTGTA 59.161 50.000 0.00 0.00 0.00 2.90
2086 5396 1.422402 ACGTTTGGTTCCTGGGTGTAT 59.578 47.619 0.00 0.00 0.00 2.29
2087 5397 2.638855 ACGTTTGGTTCCTGGGTGTATA 59.361 45.455 0.00 0.00 0.00 1.47
2088 5398 3.264964 ACGTTTGGTTCCTGGGTGTATAT 59.735 43.478 0.00 0.00 0.00 0.86
2089 5399 4.470664 ACGTTTGGTTCCTGGGTGTATATA 59.529 41.667 0.00 0.00 0.00 0.86
2090 5400 4.812626 CGTTTGGTTCCTGGGTGTATATAC 59.187 45.833 5.89 5.89 0.00 1.47
2091 5401 5.627272 CGTTTGGTTCCTGGGTGTATATACA 60.627 44.000 11.62 11.62 0.00 2.29
2104 5414 5.373222 GTGTATATACACCCAGCAATTGGA 58.627 41.667 28.48 0.00 46.85 3.53
2105 5415 5.825679 GTGTATATACACCCAGCAATTGGAA 59.174 40.000 28.48 0.00 46.85 3.53
2106 5416 6.320164 GTGTATATACACCCAGCAATTGGAAA 59.680 38.462 28.48 0.00 46.85 3.13
2107 5417 7.147983 GTGTATATACACCCAGCAATTGGAAAA 60.148 37.037 28.48 0.00 46.85 2.29
2182 5492 9.814899 TCTGAAATAAATTTGACTCTTTTTGCA 57.185 25.926 0.00 0.00 0.00 4.08
2183 5493 9.853921 CTGAAATAAATTTGACTCTTTTTGCAC 57.146 29.630 0.00 0.00 0.00 4.57
2184 5494 9.598517 TGAAATAAATTTGACTCTTTTTGCACT 57.401 25.926 0.00 0.00 0.00 4.40
2190 5500 9.683069 AAATTTGACTCTTTTTGCACTAGTATG 57.317 29.630 0.00 0.00 0.00 2.39
2191 5501 7.801716 TTTGACTCTTTTTGCACTAGTATGT 57.198 32.000 0.00 0.00 0.00 2.29
2192 5502 8.896320 TTTGACTCTTTTTGCACTAGTATGTA 57.104 30.769 0.00 0.00 0.00 2.29
2193 5503 8.896320 TTGACTCTTTTTGCACTAGTATGTAA 57.104 30.769 0.00 0.00 0.00 2.41
2194 5504 9.502091 TTGACTCTTTTTGCACTAGTATGTAAT 57.498 29.630 0.00 0.00 0.00 1.89
2195 5505 9.502091 TGACTCTTTTTGCACTAGTATGTAATT 57.498 29.630 0.00 0.00 0.00 1.40
2201 5511 8.442605 TTTTGCACTAGTATGTAATTTTTCGC 57.557 30.769 0.00 0.00 0.00 4.70
2202 5512 6.114221 TGCACTAGTATGTAATTTTTCGCC 57.886 37.500 0.00 0.00 0.00 5.54
2203 5513 5.644206 TGCACTAGTATGTAATTTTTCGCCA 59.356 36.000 0.00 0.00 0.00 5.69
2204 5514 6.149640 TGCACTAGTATGTAATTTTTCGCCAA 59.850 34.615 0.00 0.00 0.00 4.52
2205 5515 7.148154 TGCACTAGTATGTAATTTTTCGCCAAT 60.148 33.333 0.00 0.00 0.00 3.16
2206 5516 8.339714 GCACTAGTATGTAATTTTTCGCCAATA 58.660 33.333 0.00 0.00 0.00 1.90
2212 5522 9.961266 GTATGTAATTTTTCGCCAATAAAAACC 57.039 29.630 0.00 0.00 38.30 3.27
2213 5523 7.422878 TGTAATTTTTCGCCAATAAAAACCC 57.577 32.000 0.00 0.00 38.30 4.11
2214 5524 6.990349 TGTAATTTTTCGCCAATAAAAACCCA 59.010 30.769 0.00 0.00 38.30 4.51
2215 5525 6.552859 AATTTTTCGCCAATAAAAACCCAG 57.447 33.333 0.00 0.00 38.30 4.45
2216 5526 2.734276 TTCGCCAATAAAAACCCAGC 57.266 45.000 0.00 0.00 0.00 4.85
2217 5527 1.621992 TCGCCAATAAAAACCCAGCA 58.378 45.000 0.00 0.00 0.00 4.41
2218 5528 2.175202 TCGCCAATAAAAACCCAGCAT 58.825 42.857 0.00 0.00 0.00 3.79
2219 5529 2.564947 TCGCCAATAAAAACCCAGCATT 59.435 40.909 0.00 0.00 0.00 3.56
2220 5530 2.672381 CGCCAATAAAAACCCAGCATTG 59.328 45.455 0.00 0.00 0.00 2.82
2221 5531 3.616076 CGCCAATAAAAACCCAGCATTGA 60.616 43.478 0.00 0.00 0.00 2.57
2222 5532 3.684305 GCCAATAAAAACCCAGCATTGAC 59.316 43.478 0.00 0.00 0.00 3.18
2223 5533 4.563374 GCCAATAAAAACCCAGCATTGACT 60.563 41.667 0.00 0.00 0.00 3.41
2224 5534 5.550290 CCAATAAAAACCCAGCATTGACTT 58.450 37.500 0.00 0.00 0.00 3.01
2225 5535 5.997129 CCAATAAAAACCCAGCATTGACTTT 59.003 36.000 0.00 0.00 0.00 2.66
2226 5536 6.147656 CCAATAAAAACCCAGCATTGACTTTC 59.852 38.462 0.00 0.00 0.00 2.62
2227 5537 3.369546 AAAACCCAGCATTGACTTTCG 57.630 42.857 0.00 0.00 0.00 3.46
2228 5538 2.270352 AACCCAGCATTGACTTTCGA 57.730 45.000 0.00 0.00 0.00 3.71
2229 5539 1.813513 ACCCAGCATTGACTTTCGAG 58.186 50.000 0.00 0.00 0.00 4.04
2230 5540 1.089920 CCCAGCATTGACTTTCGAGG 58.910 55.000 0.00 0.00 0.00 4.63
2231 5541 1.339055 CCCAGCATTGACTTTCGAGGA 60.339 52.381 0.00 0.00 0.00 3.71
2232 5542 2.426522 CCAGCATTGACTTTCGAGGAA 58.573 47.619 0.00 0.00 0.00 3.36
2233 5543 2.813754 CCAGCATTGACTTTCGAGGAAA 59.186 45.455 0.00 0.00 0.00 3.13
2234 5544 3.253188 CCAGCATTGACTTTCGAGGAAAA 59.747 43.478 0.00 0.00 30.84 2.29
2235 5545 4.261572 CCAGCATTGACTTTCGAGGAAAAA 60.262 41.667 0.00 0.00 30.84 1.94
2265 5575 9.529325 TTGCTATATACAAGACACTATTCACAC 57.471 33.333 0.00 0.00 0.00 3.82
2266 5576 8.914011 TGCTATATACAAGACACTATTCACACT 58.086 33.333 0.00 0.00 0.00 3.55
2273 5583 8.902540 ACAAGACACTATTCACACTATTTTGA 57.097 30.769 0.00 0.00 0.00 2.69
2274 5584 8.774586 ACAAGACACTATTCACACTATTTTGAC 58.225 33.333 0.00 0.00 0.00 3.18
2275 5585 7.907214 AGACACTATTCACACTATTTTGACC 57.093 36.000 0.00 0.00 0.00 4.02
2276 5586 7.450074 AGACACTATTCACACTATTTTGACCA 58.550 34.615 0.00 0.00 0.00 4.02
2277 5587 7.936847 AGACACTATTCACACTATTTTGACCAA 59.063 33.333 0.00 0.00 0.00 3.67
2278 5588 8.458573 ACACTATTCACACTATTTTGACCAAA 57.541 30.769 0.00 0.00 0.00 3.28
2279 5589 9.077885 ACACTATTCACACTATTTTGACCAAAT 57.922 29.630 0.00 0.00 38.69 2.32
2280 5590 9.912634 CACTATTCACACTATTTTGACCAAATT 57.087 29.630 0.00 0.00 36.43 1.82
2285 5595 9.442047 TTCACACTATTTTGACCAAATTTTTGT 57.558 25.926 2.63 0.00 36.43 2.83
2286 5596 9.442047 TCACACTATTTTGACCAAATTTTTGTT 57.558 25.926 2.63 0.00 36.43 2.83
2304 5614 3.690487 TTTTTCGCCCTGAAGTCGA 57.310 47.368 0.00 0.00 37.99 4.20
2305 5615 1.956297 TTTTTCGCCCTGAAGTCGAA 58.044 45.000 0.00 0.00 39.97 3.71
2306 5616 1.508632 TTTTCGCCCTGAAGTCGAAG 58.491 50.000 0.00 0.00 42.14 3.79
2307 5617 0.949105 TTTCGCCCTGAAGTCGAAGC 60.949 55.000 0.00 0.00 42.14 3.86
2308 5618 1.816863 TTCGCCCTGAAGTCGAAGCT 61.817 55.000 0.00 0.00 37.31 3.74
2309 5619 2.097038 CGCCCTGAAGTCGAAGCTG 61.097 63.158 0.00 0.00 0.00 4.24
2310 5620 1.743252 GCCCTGAAGTCGAAGCTGG 60.743 63.158 0.00 0.00 0.00 4.85
2311 5621 1.078848 CCCTGAAGTCGAAGCTGGG 60.079 63.158 9.82 9.82 34.99 4.45
2312 5622 1.674057 CCTGAAGTCGAAGCTGGGT 59.326 57.895 0.00 0.00 0.00 4.51
2313 5623 0.035458 CCTGAAGTCGAAGCTGGGTT 59.965 55.000 0.00 0.00 0.00 4.11
2314 5624 1.543429 CCTGAAGTCGAAGCTGGGTTT 60.543 52.381 0.00 0.00 0.00 3.27
2315 5625 2.222027 CTGAAGTCGAAGCTGGGTTTT 58.778 47.619 0.00 0.00 0.00 2.43
2316 5626 2.618709 CTGAAGTCGAAGCTGGGTTTTT 59.381 45.455 0.00 0.00 0.00 1.94
2317 5627 2.357637 TGAAGTCGAAGCTGGGTTTTTG 59.642 45.455 0.00 0.00 0.00 2.44
2318 5628 2.052782 AGTCGAAGCTGGGTTTTTGT 57.947 45.000 0.00 0.00 0.00 2.83
2319 5629 2.375146 AGTCGAAGCTGGGTTTTTGTT 58.625 42.857 0.00 0.00 0.00 2.83
2320 5630 2.099098 AGTCGAAGCTGGGTTTTTGTTG 59.901 45.455 0.00 0.00 0.00 3.33
2321 5631 2.098443 GTCGAAGCTGGGTTTTTGTTGA 59.902 45.455 0.00 0.00 0.00 3.18
2322 5632 2.098443 TCGAAGCTGGGTTTTTGTTGAC 59.902 45.455 0.00 0.00 0.00 3.18
2323 5633 2.459934 GAAGCTGGGTTTTTGTTGACG 58.540 47.619 0.00 0.00 0.00 4.35
2324 5634 0.744281 AGCTGGGTTTTTGTTGACGG 59.256 50.000 0.00 0.00 0.00 4.79
2325 5635 0.741915 GCTGGGTTTTTGTTGACGGA 59.258 50.000 0.00 0.00 0.00 4.69
2326 5636 1.135333 GCTGGGTTTTTGTTGACGGAA 59.865 47.619 0.00 0.00 0.00 4.30
2327 5637 2.798145 GCTGGGTTTTTGTTGACGGAAG 60.798 50.000 0.00 0.00 0.00 3.46
2328 5638 2.685897 CTGGGTTTTTGTTGACGGAAGA 59.314 45.455 0.00 0.00 0.00 2.87
2329 5639 3.292460 TGGGTTTTTGTTGACGGAAGAT 58.708 40.909 0.00 0.00 0.00 2.40
2330 5640 3.702045 TGGGTTTTTGTTGACGGAAGATT 59.298 39.130 0.00 0.00 0.00 2.40
2331 5641 4.888239 TGGGTTTTTGTTGACGGAAGATTA 59.112 37.500 0.00 0.00 0.00 1.75
2332 5642 5.536916 TGGGTTTTTGTTGACGGAAGATTAT 59.463 36.000 0.00 0.00 0.00 1.28
2333 5643 6.715718 TGGGTTTTTGTTGACGGAAGATTATA 59.284 34.615 0.00 0.00 0.00 0.98
2334 5644 7.394923 TGGGTTTTTGTTGACGGAAGATTATAT 59.605 33.333 0.00 0.00 0.00 0.86
2335 5645 8.895737 GGGTTTTTGTTGACGGAAGATTATATA 58.104 33.333 0.00 0.00 0.00 0.86
2336 5646 9.712359 GGTTTTTGTTGACGGAAGATTATATAC 57.288 33.333 0.00 0.00 0.00 1.47
2341 5651 9.961265 TTGTTGACGGAAGATTATATACTAGTG 57.039 33.333 5.39 0.00 0.00 2.74
2342 5652 8.080417 TGTTGACGGAAGATTATATACTAGTGC 58.920 37.037 5.39 0.00 0.00 4.40
2343 5653 7.754851 TGACGGAAGATTATATACTAGTGCA 57.245 36.000 5.39 0.00 0.00 4.57
2344 5654 7.817641 TGACGGAAGATTATATACTAGTGCAG 58.182 38.462 5.39 0.00 0.00 4.41
2345 5655 7.664318 TGACGGAAGATTATATACTAGTGCAGA 59.336 37.037 5.39 0.00 0.00 4.26
2346 5656 8.405418 ACGGAAGATTATATACTAGTGCAGAA 57.595 34.615 5.39 0.00 0.00 3.02
2347 5657 8.516234 ACGGAAGATTATATACTAGTGCAGAAG 58.484 37.037 5.39 0.00 0.00 2.85
2348 5658 8.731605 CGGAAGATTATATACTAGTGCAGAAGA 58.268 37.037 5.39 0.00 0.00 2.87
2357 5667 5.283457 ACTAGTGCAGAAGAAAGTCAAGT 57.717 39.130 0.00 0.00 0.00 3.16
2358 5668 5.675538 ACTAGTGCAGAAGAAAGTCAAGTT 58.324 37.500 0.00 0.00 0.00 2.66
2359 5669 6.116126 ACTAGTGCAGAAGAAAGTCAAGTTT 58.884 36.000 0.00 0.00 0.00 2.66
2360 5670 7.272978 ACTAGTGCAGAAGAAAGTCAAGTTTA 58.727 34.615 0.00 0.00 0.00 2.01
2361 5671 7.934120 ACTAGTGCAGAAGAAAGTCAAGTTTAT 59.066 33.333 0.00 0.00 0.00 1.40
2362 5672 7.573968 AGTGCAGAAGAAAGTCAAGTTTATT 57.426 32.000 0.00 0.00 0.00 1.40
2363 5673 7.643579 AGTGCAGAAGAAAGTCAAGTTTATTC 58.356 34.615 8.83 8.83 37.73 1.75
2364 5674 7.283127 AGTGCAGAAGAAAGTCAAGTTTATTCA 59.717 33.333 16.00 0.00 39.20 2.57
2365 5675 7.915397 GTGCAGAAGAAAGTCAAGTTTATTCAA 59.085 33.333 16.00 3.49 39.20 2.69
2366 5676 8.465999 TGCAGAAGAAAGTCAAGTTTATTCAAA 58.534 29.630 16.00 3.23 39.20 2.69
2367 5677 9.301153 GCAGAAGAAAGTCAAGTTTATTCAAAA 57.699 29.630 16.00 0.00 39.20 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 180 2.126149 CTGCAGCGAGACGAGCTT 60.126 61.111 0.00 0.00 44.06 3.74
215 256 0.251916 CCAATAGGTCGGCCAGAACA 59.748 55.000 9.71 2.42 39.61 3.18
770 816 0.670162 AGTACAACCACACGCTACGT 59.330 50.000 0.00 0.00 42.36 3.57
858 904 0.823769 TCTGAGGAGATATGCGGCGT 60.824 55.000 9.37 0.00 0.00 5.68
868 914 1.066858 GCGGTTTGTGATCTGAGGAGA 60.067 52.381 0.00 0.00 0.00 3.71
926 4134 8.408043 TGATGGAAGCAAGAAAGAATAAAAGA 57.592 30.769 0.00 0.00 0.00 2.52
1024 4271 0.754587 GTATTCTCCCCCGTCGTCCT 60.755 60.000 0.00 0.00 0.00 3.85
1053 4300 4.688419 ACGTACGACCACGCCGTG 62.688 66.667 24.41 10.95 45.77 4.94
1408 4682 6.456988 CCGCGTTTGCTTTCTTTCTATTCTAT 60.457 38.462 4.92 0.00 39.65 1.98
1409 4683 5.163893 CCGCGTTTGCTTTCTTTCTATTCTA 60.164 40.000 4.92 0.00 39.65 2.10
1410 4684 4.378459 CCGCGTTTGCTTTCTTTCTATTCT 60.378 41.667 4.92 0.00 39.65 2.40
1411 4685 3.846335 CCGCGTTTGCTTTCTTTCTATTC 59.154 43.478 4.92 0.00 39.65 1.75
1413 4687 2.161609 CCCGCGTTTGCTTTCTTTCTAT 59.838 45.455 4.92 0.00 39.65 1.98
1414 4688 1.533731 CCCGCGTTTGCTTTCTTTCTA 59.466 47.619 4.92 0.00 39.65 2.10
1415 4689 0.310854 CCCGCGTTTGCTTTCTTTCT 59.689 50.000 4.92 0.00 39.65 2.52
1416 4690 0.309612 TCCCGCGTTTGCTTTCTTTC 59.690 50.000 4.92 0.00 39.65 2.62
1420 4694 2.126850 GCTCCCGCGTTTGCTTTC 60.127 61.111 4.92 0.00 39.65 2.62
1431 4706 2.672996 CCAACAAGTGGGCTCCCG 60.673 66.667 0.00 0.00 44.64 5.14
1454 4729 4.914291 CGTCCCAAAGTTCAACGC 57.086 55.556 0.00 0.00 0.00 4.84
1481 4762 7.823310 CCTCATTCTCATTCCTATTATCAGTGG 59.177 40.741 0.00 0.00 0.00 4.00
1517 4801 4.883083 TCGGCACATTACCTAATCTCATC 58.117 43.478 0.00 0.00 0.00 2.92
1518 4802 4.800914 GCTCGGCACATTACCTAATCTCAT 60.801 45.833 0.00 0.00 0.00 2.90
1519 4803 3.492656 GCTCGGCACATTACCTAATCTCA 60.493 47.826 0.00 0.00 0.00 3.27
1549 4848 4.085357 TGCAGTTAACACCACTGAATCT 57.915 40.909 8.61 0.00 43.90 2.40
1561 4860 4.479619 CAGCTTCTCCAAATGCAGTTAAC 58.520 43.478 0.00 0.00 0.00 2.01
1570 4871 0.613012 GGCACCCAGCTTCTCCAAAT 60.613 55.000 0.00 0.00 44.79 2.32
1586 4887 1.890876 ATCTTTGCGTGTTAGTGGCA 58.109 45.000 0.00 0.00 34.35 4.92
1613 4914 2.489971 TCTGTACAAAAGAGCCAACCG 58.510 47.619 0.00 0.00 0.00 4.44
1661 4969 2.808244 ACGTGTGTTTTTGAATGGCAG 58.192 42.857 0.00 0.00 0.00 4.85
1665 4973 2.283884 GGGCAACGTGTGTTTTTGAATG 59.716 45.455 0.00 0.00 35.72 2.67
1679 4987 0.176680 ACAGAGATAGCAGGGCAACG 59.823 55.000 0.00 0.00 37.60 4.10
1686 4994 5.524281 TCTTGTACGTAGACAGAGATAGCAG 59.476 44.000 0.00 0.00 0.00 4.24
1702 5010 6.444633 TCTCTTCCACTTTTACTCTTGTACG 58.555 40.000 0.00 0.00 0.00 3.67
1703 5011 9.924650 TTATCTCTTCCACTTTTACTCTTGTAC 57.075 33.333 0.00 0.00 0.00 2.90
1704 5012 9.924650 GTTATCTCTTCCACTTTTACTCTTGTA 57.075 33.333 0.00 0.00 0.00 2.41
1705 5013 7.599245 CGTTATCTCTTCCACTTTTACTCTTGT 59.401 37.037 0.00 0.00 0.00 3.16
1706 5014 7.063544 CCGTTATCTCTTCCACTTTTACTCTTG 59.936 40.741 0.00 0.00 0.00 3.02
1707 5015 7.039223 TCCGTTATCTCTTCCACTTTTACTCTT 60.039 37.037 0.00 0.00 0.00 2.85
1708 5016 6.436532 TCCGTTATCTCTTCCACTTTTACTCT 59.563 38.462 0.00 0.00 0.00 3.24
1709 5017 6.530887 GTCCGTTATCTCTTCCACTTTTACTC 59.469 42.308 0.00 0.00 0.00 2.59
1710 5018 6.396450 GTCCGTTATCTCTTCCACTTTTACT 58.604 40.000 0.00 0.00 0.00 2.24
1711 5019 5.579904 GGTCCGTTATCTCTTCCACTTTTAC 59.420 44.000 0.00 0.00 0.00 2.01
1712 5020 5.246656 TGGTCCGTTATCTCTTCCACTTTTA 59.753 40.000 0.00 0.00 0.00 1.52
1713 5021 4.041198 TGGTCCGTTATCTCTTCCACTTTT 59.959 41.667 0.00 0.00 0.00 2.27
1714 5022 3.581332 TGGTCCGTTATCTCTTCCACTTT 59.419 43.478 0.00 0.00 0.00 2.66
1715 5023 3.056035 GTGGTCCGTTATCTCTTCCACTT 60.056 47.826 0.00 0.00 40.14 3.16
1716 5024 2.496470 GTGGTCCGTTATCTCTTCCACT 59.504 50.000 0.00 0.00 40.14 4.00
1717 5025 2.232941 TGTGGTCCGTTATCTCTTCCAC 59.767 50.000 0.00 0.00 42.56 4.02
1718 5026 2.531771 TGTGGTCCGTTATCTCTTCCA 58.468 47.619 0.00 0.00 0.00 3.53
1746 5054 4.375272 CTCTAGCATACACATTGGACTGG 58.625 47.826 0.00 0.00 0.00 4.00
1761 5069 3.020274 CCAAGTCTGTCTAGCTCTAGCA 58.980 50.000 4.54 1.25 45.16 3.49
1762 5070 2.223711 GCCAAGTCTGTCTAGCTCTAGC 60.224 54.545 0.00 0.00 42.49 3.42
1766 5074 2.977772 ATGCCAAGTCTGTCTAGCTC 57.022 50.000 0.00 0.00 0.00 4.09
1767 5075 3.070734 CCATATGCCAAGTCTGTCTAGCT 59.929 47.826 0.00 0.00 0.00 3.32
1768 5076 3.181461 ACCATATGCCAAGTCTGTCTAGC 60.181 47.826 0.00 0.00 0.00 3.42
1769 5077 4.679373 ACCATATGCCAAGTCTGTCTAG 57.321 45.455 0.00 0.00 0.00 2.43
1770 5078 4.769688 CAACCATATGCCAAGTCTGTCTA 58.230 43.478 0.00 0.00 0.00 2.59
1792 5100 3.024547 GAGGGAAATGGGTTAAGAAGGC 58.975 50.000 0.00 0.00 0.00 4.35
1796 5104 2.093128 GCGAGAGGGAAATGGGTTAAGA 60.093 50.000 0.00 0.00 0.00 2.10
1797 5105 2.289565 GCGAGAGGGAAATGGGTTAAG 58.710 52.381 0.00 0.00 0.00 1.85
1798 5106 1.631388 TGCGAGAGGGAAATGGGTTAA 59.369 47.619 0.00 0.00 0.00 2.01
1799 5107 1.281419 TGCGAGAGGGAAATGGGTTA 58.719 50.000 0.00 0.00 0.00 2.85
1800 5108 0.404040 TTGCGAGAGGGAAATGGGTT 59.596 50.000 0.00 0.00 0.00 4.11
1801 5109 0.625849 ATTGCGAGAGGGAAATGGGT 59.374 50.000 0.00 0.00 0.00 4.51
1802 5110 1.027357 CATTGCGAGAGGGAAATGGG 58.973 55.000 0.00 0.00 0.00 4.00
1803 5111 2.042686 TCATTGCGAGAGGGAAATGG 57.957 50.000 0.00 0.00 32.17 3.16
1804 5112 2.551459 GGATCATTGCGAGAGGGAAATG 59.449 50.000 0.00 0.00 0.00 2.32
1805 5113 2.808202 CGGATCATTGCGAGAGGGAAAT 60.808 50.000 0.00 0.00 39.29 2.17
1806 5114 1.473257 CGGATCATTGCGAGAGGGAAA 60.473 52.381 0.00 0.00 39.29 3.13
1807 5115 0.104855 CGGATCATTGCGAGAGGGAA 59.895 55.000 0.00 0.00 39.29 3.97
1808 5116 0.755327 TCGGATCATTGCGAGAGGGA 60.755 55.000 0.00 0.00 41.04 4.20
1809 5117 0.598680 GTCGGATCATTGCGAGAGGG 60.599 60.000 0.00 0.00 46.79 4.30
1810 5118 0.598680 GGTCGGATCATTGCGAGAGG 60.599 60.000 0.00 0.00 46.79 3.69
1811 5119 0.103026 TGGTCGGATCATTGCGAGAG 59.897 55.000 0.00 0.00 46.79 3.20
1812 5120 0.752658 ATGGTCGGATCATTGCGAGA 59.247 50.000 0.00 0.00 46.79 4.04
1817 5125 3.282021 AGTTTGGATGGTCGGATCATTG 58.718 45.455 5.03 0.00 0.00 2.82
1826 5134 1.474077 GTGCATGGAGTTTGGATGGTC 59.526 52.381 0.00 0.00 0.00 4.02
1828 5136 1.203052 GTGTGCATGGAGTTTGGATGG 59.797 52.381 0.00 0.00 0.00 3.51
1840 5148 2.355756 CCGATTCTTAAGGGTGTGCATG 59.644 50.000 1.85 0.00 0.00 4.06
1844 5152 2.290071 ACCACCGATTCTTAAGGGTGTG 60.290 50.000 20.55 15.87 46.64 3.82
1853 5161 6.436532 TCTCTAGTTCTTAACCACCGATTCTT 59.563 38.462 0.00 0.00 0.00 2.52
1858 5166 4.015084 CCTCTCTAGTTCTTAACCACCGA 58.985 47.826 0.00 0.00 0.00 4.69
1884 5192 3.343617 TGCGAAATGTTCTCTTTAGGGG 58.656 45.455 0.00 0.00 0.00 4.79
1893 5201 5.514274 TCCTTCTTTTTGCGAAATGTTCT 57.486 34.783 11.07 0.00 0.00 3.01
1894 5202 5.977129 TCTTCCTTCTTTTTGCGAAATGTTC 59.023 36.000 11.07 0.00 0.00 3.18
1895 5203 5.901552 TCTTCCTTCTTTTTGCGAAATGTT 58.098 33.333 11.07 0.00 0.00 2.71
1896 5204 5.514274 TCTTCCTTCTTTTTGCGAAATGT 57.486 34.783 11.07 0.00 0.00 2.71
1897 5205 6.826893 TTTCTTCCTTCTTTTTGCGAAATG 57.173 33.333 0.00 2.89 0.00 2.32
1898 5206 7.841915 TTTTTCTTCCTTCTTTTTGCGAAAT 57.158 28.000 0.00 0.00 0.00 2.17
1922 5230 7.344612 ACCATCCTTTGTTCTCTTTAGGTTTTT 59.655 33.333 0.00 0.00 0.00 1.94
1923 5231 6.839134 ACCATCCTTTGTTCTCTTTAGGTTTT 59.161 34.615 0.00 0.00 0.00 2.43
1924 5232 6.373759 ACCATCCTTTGTTCTCTTTAGGTTT 58.626 36.000 0.00 0.00 0.00 3.27
1925 5233 5.953571 ACCATCCTTTGTTCTCTTTAGGTT 58.046 37.500 0.00 0.00 0.00 3.50
1926 5234 5.584551 ACCATCCTTTGTTCTCTTTAGGT 57.415 39.130 0.00 0.00 0.00 3.08
1969 5277 6.318900 CCACTATTCCATAAACTCCAGGAAAC 59.681 42.308 0.00 0.00 42.83 2.78
1972 5280 5.285401 TCCACTATTCCATAAACTCCAGGA 58.715 41.667 0.00 0.00 0.00 3.86
1979 5287 5.131067 GGGAGGTTCCACTATTCCATAAAC 58.869 45.833 0.00 0.00 38.64 2.01
1989 5297 0.113776 AGACACGGGAGGTTCCACTA 59.886 55.000 0.00 0.00 38.64 2.74
1992 5300 0.761323 TGAAGACACGGGAGGTTCCA 60.761 55.000 0.00 0.00 38.64 3.53
1993 5301 0.320508 GTGAAGACACGGGAGGTTCC 60.321 60.000 0.00 0.00 37.28 3.62
1994 5302 3.212450 GTGAAGACACGGGAGGTTC 57.788 57.895 0.00 0.00 37.28 3.62
2013 5323 2.747446 ACACAAGTCAAACACACCTGTC 59.253 45.455 0.00 0.00 0.00 3.51
2015 5325 2.731968 GCACACAAGTCAAACACACCTG 60.732 50.000 0.00 0.00 0.00 4.00
2034 5344 3.963383 GAAAACCTGTTTCGAAGAGCA 57.037 42.857 0.00 0.00 38.43 4.26
2042 5352 0.942252 ACCGAGCGAAAACCTGTTTC 59.058 50.000 0.00 0.00 31.45 2.78
2043 5353 0.661020 CACCGAGCGAAAACCTGTTT 59.339 50.000 0.00 0.00 0.00 2.83
2044 5354 1.782028 GCACCGAGCGAAAACCTGTT 61.782 55.000 0.00 0.00 0.00 3.16
2045 5355 2.251642 GCACCGAGCGAAAACCTGT 61.252 57.895 0.00 0.00 0.00 4.00
2046 5356 2.556287 GCACCGAGCGAAAACCTG 59.444 61.111 0.00 0.00 0.00 4.00
2055 5365 4.072088 CAAACGTCCGCACCGAGC 62.072 66.667 0.00 0.00 40.87 5.03
2056 5366 3.411351 CCAAACGTCCGCACCGAG 61.411 66.667 0.00 0.00 0.00 4.63
2057 5367 3.736732 AACCAAACGTCCGCACCGA 62.737 57.895 0.00 0.00 0.00 4.69
2058 5368 3.231324 GAACCAAACGTCCGCACCG 62.231 63.158 0.00 0.00 0.00 4.94
2059 5369 2.635338 GAACCAAACGTCCGCACC 59.365 61.111 0.00 0.00 0.00 5.01
2060 5370 1.890510 AGGAACCAAACGTCCGCAC 60.891 57.895 0.00 0.00 0.00 5.34
2061 5371 1.890041 CAGGAACCAAACGTCCGCA 60.890 57.895 0.00 0.00 0.00 5.69
2062 5372 2.613506 CCAGGAACCAAACGTCCGC 61.614 63.158 0.00 0.00 0.00 5.54
2063 5373 1.964373 CCCAGGAACCAAACGTCCG 60.964 63.158 0.00 0.00 0.00 4.79
2064 5374 1.149854 ACCCAGGAACCAAACGTCC 59.850 57.895 0.00 0.00 0.00 4.79
2065 5375 0.464916 ACACCCAGGAACCAAACGTC 60.465 55.000 0.00 0.00 0.00 4.34
2066 5376 0.838608 TACACCCAGGAACCAAACGT 59.161 50.000 0.00 0.00 0.00 3.99
2067 5377 2.194201 ATACACCCAGGAACCAAACG 57.806 50.000 0.00 0.00 0.00 3.60
2068 5378 5.747342 TGTATATACACCCAGGAACCAAAC 58.253 41.667 11.62 0.00 0.00 2.93
2082 5392 5.638530 TCCAATTGCTGGGTGTATATACA 57.361 39.130 11.62 11.62 46.44 2.29
2083 5393 6.952773 TTTCCAATTGCTGGGTGTATATAC 57.047 37.500 5.89 5.89 46.44 1.47
2084 5394 7.962995 TTTTTCCAATTGCTGGGTGTATATA 57.037 32.000 0.00 0.00 46.44 0.86
2085 5395 6.865834 TTTTTCCAATTGCTGGGTGTATAT 57.134 33.333 0.00 0.00 46.44 0.86
2156 5466 9.814899 TGCAAAAAGAGTCAAATTTATTTCAGA 57.185 25.926 0.00 0.00 0.00 3.27
2157 5467 9.853921 GTGCAAAAAGAGTCAAATTTATTTCAG 57.146 29.630 0.00 0.00 0.00 3.02
2158 5468 9.598517 AGTGCAAAAAGAGTCAAATTTATTTCA 57.401 25.926 0.00 0.00 0.00 2.69
2164 5474 9.683069 CATACTAGTGCAAAAAGAGTCAAATTT 57.317 29.630 5.39 0.00 0.00 1.82
2165 5475 8.850156 ACATACTAGTGCAAAAAGAGTCAAATT 58.150 29.630 5.39 0.00 0.00 1.82
2166 5476 8.396272 ACATACTAGTGCAAAAAGAGTCAAAT 57.604 30.769 5.39 0.00 0.00 2.32
2167 5477 7.801716 ACATACTAGTGCAAAAAGAGTCAAA 57.198 32.000 5.39 0.00 0.00 2.69
2168 5478 8.896320 TTACATACTAGTGCAAAAAGAGTCAA 57.104 30.769 5.39 0.00 0.00 3.18
2169 5479 9.502091 AATTACATACTAGTGCAAAAAGAGTCA 57.498 29.630 5.39 0.00 0.00 3.41
2175 5485 8.907685 GCGAAAAATTACATACTAGTGCAAAAA 58.092 29.630 5.39 0.00 0.00 1.94
2176 5486 7.539366 GGCGAAAAATTACATACTAGTGCAAAA 59.461 33.333 5.39 0.00 0.00 2.44
2177 5487 7.024768 GGCGAAAAATTACATACTAGTGCAAA 58.975 34.615 5.39 0.00 0.00 3.68
2178 5488 6.149640 TGGCGAAAAATTACATACTAGTGCAA 59.850 34.615 5.39 0.00 0.00 4.08
2179 5489 5.644206 TGGCGAAAAATTACATACTAGTGCA 59.356 36.000 5.39 0.00 0.00 4.57
2180 5490 6.114221 TGGCGAAAAATTACATACTAGTGC 57.886 37.500 5.39 0.00 0.00 4.40
2186 5496 9.961266 GGTTTTTATTGGCGAAAAATTACATAC 57.039 29.630 7.48 0.00 37.89 2.39
2187 5497 9.152595 GGGTTTTTATTGGCGAAAAATTACATA 57.847 29.630 7.48 0.00 37.89 2.29
2188 5498 7.661847 TGGGTTTTTATTGGCGAAAAATTACAT 59.338 29.630 7.48 0.00 37.89 2.29
2189 5499 6.990349 TGGGTTTTTATTGGCGAAAAATTACA 59.010 30.769 7.48 5.49 37.89 2.41
2190 5500 7.422878 TGGGTTTTTATTGGCGAAAAATTAC 57.577 32.000 7.48 3.69 37.89 1.89
2191 5501 6.147985 GCTGGGTTTTTATTGGCGAAAAATTA 59.852 34.615 7.48 0.00 37.89 1.40
2192 5502 5.049060 GCTGGGTTTTTATTGGCGAAAAATT 60.049 36.000 7.48 0.00 37.89 1.82
2193 5503 4.454161 GCTGGGTTTTTATTGGCGAAAAAT 59.546 37.500 7.48 0.00 37.89 1.82
2194 5504 3.810386 GCTGGGTTTTTATTGGCGAAAAA 59.190 39.130 0.00 1.72 34.28 1.94
2195 5505 3.181465 TGCTGGGTTTTTATTGGCGAAAA 60.181 39.130 0.00 0.00 0.00 2.29
2196 5506 2.365617 TGCTGGGTTTTTATTGGCGAAA 59.634 40.909 0.00 0.00 0.00 3.46
2197 5507 1.964223 TGCTGGGTTTTTATTGGCGAA 59.036 42.857 0.00 0.00 0.00 4.70
2198 5508 1.621992 TGCTGGGTTTTTATTGGCGA 58.378 45.000 0.00 0.00 0.00 5.54
2199 5509 2.671130 ATGCTGGGTTTTTATTGGCG 57.329 45.000 0.00 0.00 0.00 5.69
2200 5510 3.684305 GTCAATGCTGGGTTTTTATTGGC 59.316 43.478 0.00 0.00 31.47 4.52
2201 5511 5.151297 AGTCAATGCTGGGTTTTTATTGG 57.849 39.130 0.00 0.00 31.47 3.16
2202 5512 6.128849 CGAAAGTCAATGCTGGGTTTTTATTG 60.129 38.462 0.00 0.00 0.00 1.90
2203 5513 5.925969 CGAAAGTCAATGCTGGGTTTTTATT 59.074 36.000 0.00 0.00 0.00 1.40
2204 5514 5.242838 TCGAAAGTCAATGCTGGGTTTTTAT 59.757 36.000 0.00 0.00 0.00 1.40
2205 5515 4.580995 TCGAAAGTCAATGCTGGGTTTTTA 59.419 37.500 0.00 0.00 0.00 1.52
2206 5516 3.383185 TCGAAAGTCAATGCTGGGTTTTT 59.617 39.130 0.00 0.00 0.00 1.94
2207 5517 2.955660 TCGAAAGTCAATGCTGGGTTTT 59.044 40.909 0.00 0.00 0.00 2.43
2208 5518 2.554032 CTCGAAAGTCAATGCTGGGTTT 59.446 45.455 0.00 0.00 0.00 3.27
2209 5519 2.154462 CTCGAAAGTCAATGCTGGGTT 58.846 47.619 0.00 0.00 0.00 4.11
2210 5520 1.611673 CCTCGAAAGTCAATGCTGGGT 60.612 52.381 0.00 0.00 0.00 4.51
2211 5521 1.089920 CCTCGAAAGTCAATGCTGGG 58.910 55.000 0.00 0.00 0.00 4.45
2212 5522 2.099141 TCCTCGAAAGTCAATGCTGG 57.901 50.000 0.00 0.00 0.00 4.85
2213 5523 4.488126 TTTTCCTCGAAAGTCAATGCTG 57.512 40.909 0.00 0.00 32.93 4.41
2239 5549 9.529325 GTGTGAATAGTGTCTTGTATATAGCAA 57.471 33.333 0.00 0.00 0.00 3.91
2240 5550 8.914011 AGTGTGAATAGTGTCTTGTATATAGCA 58.086 33.333 0.00 0.00 0.00 3.49
2247 5557 9.990360 TCAAAATAGTGTGAATAGTGTCTTGTA 57.010 29.630 0.00 0.00 0.00 2.41
2248 5558 8.774586 GTCAAAATAGTGTGAATAGTGTCTTGT 58.225 33.333 0.00 0.00 0.00 3.16
2249 5559 8.230486 GGTCAAAATAGTGTGAATAGTGTCTTG 58.770 37.037 0.00 0.00 0.00 3.02
2250 5560 7.936847 TGGTCAAAATAGTGTGAATAGTGTCTT 59.063 33.333 0.00 0.00 0.00 3.01
2251 5561 7.450074 TGGTCAAAATAGTGTGAATAGTGTCT 58.550 34.615 0.00 0.00 0.00 3.41
2252 5562 7.667043 TGGTCAAAATAGTGTGAATAGTGTC 57.333 36.000 0.00 0.00 0.00 3.67
2253 5563 8.458573 TTTGGTCAAAATAGTGTGAATAGTGT 57.541 30.769 0.00 0.00 0.00 3.55
2254 5564 9.912634 AATTTGGTCAAAATAGTGTGAATAGTG 57.087 29.630 0.00 0.00 37.51 2.74
2259 5569 9.442047 ACAAAAATTTGGTCAAAATAGTGTGAA 57.558 25.926 10.38 0.00 42.34 3.18
2260 5570 9.442047 AACAAAAATTTGGTCAAAATAGTGTGA 57.558 25.926 10.38 0.00 42.34 3.58
2292 5602 1.743252 CCAGCTTCGACTTCAGGGC 60.743 63.158 0.00 0.00 0.00 5.19
2293 5603 1.078848 CCCAGCTTCGACTTCAGGG 60.079 63.158 0.00 0.00 0.00 4.45
2294 5604 0.035458 AACCCAGCTTCGACTTCAGG 59.965 55.000 0.00 0.00 0.00 3.86
2295 5605 1.884235 AAACCCAGCTTCGACTTCAG 58.116 50.000 0.00 0.00 0.00 3.02
2296 5606 2.341846 AAAACCCAGCTTCGACTTCA 57.658 45.000 0.00 0.00 0.00 3.02
2297 5607 2.357952 ACAAAAACCCAGCTTCGACTTC 59.642 45.455 0.00 0.00 0.00 3.01
2298 5608 2.375146 ACAAAAACCCAGCTTCGACTT 58.625 42.857 0.00 0.00 0.00 3.01
2299 5609 2.052782 ACAAAAACCCAGCTTCGACT 57.947 45.000 0.00 0.00 0.00 4.18
2300 5610 2.098443 TCAACAAAAACCCAGCTTCGAC 59.902 45.455 0.00 0.00 0.00 4.20
2301 5611 2.098443 GTCAACAAAAACCCAGCTTCGA 59.902 45.455 0.00 0.00 0.00 3.71
2302 5612 2.459934 GTCAACAAAAACCCAGCTTCG 58.540 47.619 0.00 0.00 0.00 3.79
2303 5613 2.459934 CGTCAACAAAAACCCAGCTTC 58.540 47.619 0.00 0.00 0.00 3.86
2304 5614 1.136110 CCGTCAACAAAAACCCAGCTT 59.864 47.619 0.00 0.00 0.00 3.74
2305 5615 0.744281 CCGTCAACAAAAACCCAGCT 59.256 50.000 0.00 0.00 0.00 4.24
2306 5616 0.741915 TCCGTCAACAAAAACCCAGC 59.258 50.000 0.00 0.00 0.00 4.85
2307 5617 2.685897 TCTTCCGTCAACAAAAACCCAG 59.314 45.455 0.00 0.00 0.00 4.45
2308 5618 2.724454 TCTTCCGTCAACAAAAACCCA 58.276 42.857 0.00 0.00 0.00 4.51
2309 5619 4.316205 AATCTTCCGTCAACAAAAACCC 57.684 40.909 0.00 0.00 0.00 4.11
2310 5620 9.712359 GTATATAATCTTCCGTCAACAAAAACC 57.288 33.333 0.00 0.00 0.00 3.27
2315 5625 9.961265 CACTAGTATATAATCTTCCGTCAACAA 57.039 33.333 0.00 0.00 0.00 2.83
2316 5626 8.080417 GCACTAGTATATAATCTTCCGTCAACA 58.920 37.037 0.00 0.00 0.00 3.33
2317 5627 8.080417 TGCACTAGTATATAATCTTCCGTCAAC 58.920 37.037 0.00 0.00 0.00 3.18
2318 5628 8.173542 TGCACTAGTATATAATCTTCCGTCAA 57.826 34.615 0.00 0.00 0.00 3.18
2319 5629 7.664318 TCTGCACTAGTATATAATCTTCCGTCA 59.336 37.037 0.00 0.00 0.00 4.35
2320 5630 8.041829 TCTGCACTAGTATATAATCTTCCGTC 57.958 38.462 0.00 0.00 0.00 4.79
2321 5631 7.997773 TCTGCACTAGTATATAATCTTCCGT 57.002 36.000 0.00 0.00 0.00 4.69
2322 5632 8.731605 TCTTCTGCACTAGTATATAATCTTCCG 58.268 37.037 0.00 0.00 0.00 4.30
2331 5641 8.754080 ACTTGACTTTCTTCTGCACTAGTATAT 58.246 33.333 0.00 0.00 0.00 0.86
2332 5642 8.123639 ACTTGACTTTCTTCTGCACTAGTATA 57.876 34.615 0.00 0.00 0.00 1.47
2333 5643 6.998802 ACTTGACTTTCTTCTGCACTAGTAT 58.001 36.000 0.00 0.00 0.00 2.12
2334 5644 6.406692 ACTTGACTTTCTTCTGCACTAGTA 57.593 37.500 0.00 0.00 0.00 1.82
2335 5645 5.283457 ACTTGACTTTCTTCTGCACTAGT 57.717 39.130 0.00 0.00 0.00 2.57
2336 5646 6.610741 AAACTTGACTTTCTTCTGCACTAG 57.389 37.500 0.00 0.00 0.00 2.57
2337 5647 8.677148 AATAAACTTGACTTTCTTCTGCACTA 57.323 30.769 0.00 0.00 0.00 2.74
2338 5648 7.283127 TGAATAAACTTGACTTTCTTCTGCACT 59.717 33.333 0.00 0.00 0.00 4.40
2339 5649 7.417612 TGAATAAACTTGACTTTCTTCTGCAC 58.582 34.615 0.00 0.00 0.00 4.57
2340 5650 7.566760 TGAATAAACTTGACTTTCTTCTGCA 57.433 32.000 0.00 0.00 0.00 4.41
2341 5651 8.856490 TTTGAATAAACTTGACTTTCTTCTGC 57.144 30.769 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.