Multiple sequence alignment - TraesCS5B01G504400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G504400 chr5B 100.000 6643 0 0 1 6643 670532364 670539006 0.000000e+00 12268.0
1 TraesCS5B01G504400 chr5B 82.237 912 129 20 2889 3774 670683935 670684839 0.000000e+00 756.0
2 TraesCS5B01G504400 chr5B 82.887 485 62 10 4282 4764 18337820 18338285 3.710000e-112 416.0
3 TraesCS5B01G504400 chr5B 89.888 178 16 2 4969 5145 18343690 18343866 1.860000e-55 228.0
4 TraesCS5B01G504400 chr5B 90.286 175 14 2 2623 2794 670534935 670535109 6.700000e-55 226.0
5 TraesCS5B01G504400 chr5B 90.286 175 14 2 2572 2746 670534986 670535157 6.700000e-55 226.0
6 TraesCS5B01G504400 chr5B 90.964 166 15 0 4812 4977 18338290 18338455 2.410000e-54 224.0
7 TraesCS5B01G504400 chr5B 90.000 140 13 1 4147 4286 18337638 18337776 5.290000e-41 180.0
8 TraesCS5B01G504400 chr5B 84.397 141 21 1 1952 2091 675874920 675875060 3.230000e-28 137.0
9 TraesCS5B01G504400 chr4A 95.190 3181 123 12 2623 5786 641253697 641250530 0.000000e+00 5000.0
10 TraesCS5B01G504400 chr4A 91.362 984 53 21 1770 2746 641254481 641253523 0.000000e+00 1317.0
11 TraesCS5B01G504400 chr4A 85.117 1028 129 17 4630 5646 641009113 641008099 0.000000e+00 1029.0
12 TraesCS5B01G504400 chr4A 83.442 918 101 24 4282 5188 524285643 524286520 0.000000e+00 806.0
13 TraesCS5B01G504400 chr4A 83.025 919 123 19 2889 3780 641010911 641009999 0.000000e+00 802.0
14 TraesCS5B01G504400 chr4A 81.461 917 132 16 2889 3780 641068496 641067593 0.000000e+00 717.0
15 TraesCS5B01G504400 chr4A 93.053 475 25 2 6119 6589 641249710 641249240 0.000000e+00 688.0
16 TraesCS5B01G504400 chr4A 88.326 454 39 8 1277 1721 641254922 641254474 3.530000e-147 532.0
17 TraesCS5B01G504400 chr4A 97.386 153 3 1 5967 6119 641250149 641249998 6.610000e-65 259.0
18 TraesCS5B01G504400 chr4A 81.646 316 17 11 797 1089 641255496 641255199 2.410000e-54 224.0
19 TraesCS5B01G504400 chr4A 88.028 142 14 3 4147 4287 524285462 524285601 1.480000e-36 165.0
20 TraesCS5B01G504400 chr4A 95.062 81 4 0 354 434 735837495 735837415 1.940000e-25 128.0
21 TraesCS5B01G504400 chr4A 80.899 89 17 0 2572 2660 641253598 641253510 3.320000e-08 71.3
22 TraesCS5B01G504400 chr4A 85.938 64 4 3 6585 6643 641248974 641248911 5.560000e-06 63.9
23 TraesCS5B01G504400 chr4A 84.375 64 7 2 2734 2794 641253685 641253622 7.190000e-05 60.2
24 TraesCS5B01G504400 chr5D 94.980 3028 108 20 3052 6069 531388810 531391803 0.000000e+00 4710.0
25 TraesCS5B01G504400 chr5D 92.941 850 37 10 1980 2807 531387646 531388494 0.000000e+00 1216.0
26 TraesCS5B01G504400 chr5D 89.142 921 40 27 831 1718 531386580 531387473 0.000000e+00 1092.0
27 TraesCS5B01G504400 chr5D 85.533 1023 125 16 4630 5643 531405396 531406404 0.000000e+00 1048.0
28 TraesCS5B01G504400 chr5D 82.366 913 122 24 2889 3774 531403601 531404501 0.000000e+00 758.0
29 TraesCS5B01G504400 chr5D 93.249 474 27 2 6116 6589 531392106 531392574 0.000000e+00 693.0
30 TraesCS5B01G504400 chr5D 91.342 462 34 3 2572 3027 531388355 531388816 1.570000e-175 627.0
31 TraesCS5B01G504400 chr5D 90.855 339 30 1 4808 5145 26264862 26265200 2.820000e-123 453.0
32 TraesCS5B01G504400 chr5D 88.158 304 33 3 429 730 531385698 531386000 6.330000e-95 359.0
33 TraesCS5B01G504400 chr5D 84.900 351 50 2 1 351 531384588 531384935 1.060000e-92 351.0
34 TraesCS5B01G504400 chr5D 86.184 304 35 6 429 730 531384937 531385235 8.310000e-84 322.0
35 TraesCS5B01G504400 chr5D 90.336 238 23 0 114 351 531385459 531385696 5.000000e-81 313.0
36 TraesCS5B01G504400 chr5D 94.382 178 9 1 1770 1947 531387469 531387645 8.490000e-69 272.0
37 TraesCS5B01G504400 chr5D 93.820 178 8 1 2572 2746 531388406 531388583 1.420000e-66 265.0
38 TraesCS5B01G504400 chr5D 84.298 242 32 3 2572 2807 531388304 531388545 1.440000e-56 231.0
39 TraesCS5B01G504400 chr5D 88.202 178 15 3 2623 2794 531388253 531388430 2.430000e-49 207.0
40 TraesCS5B01G504400 chr5D 87.324 142 18 0 1951 2092 265961979 265961838 5.330000e-36 163.0
41 TraesCS5B01G504400 chr5D 92.188 64 3 1 729 790 531385330 531385393 9.180000e-14 89.8
42 TraesCS5B01G504400 chr5D 82.022 89 13 1 2722 2807 531388253 531388341 9.240000e-09 73.1
43 TraesCS5B01G504400 chr2A 83.179 862 107 20 4294 5145 702063496 702062663 0.000000e+00 754.0
44 TraesCS5B01G504400 chr2A 87.413 143 12 5 4147 4287 702063688 702063550 6.900000e-35 159.0
45 TraesCS5B01G504400 chr4B 85.103 631 78 7 4282 4904 65082275 65082897 1.220000e-176 630.0
46 TraesCS5B01G504400 chr4B 84.628 631 81 7 4282 4904 65499937 65500559 1.220000e-171 614.0
47 TraesCS5B01G504400 chr4B 87.160 257 21 6 4933 5188 65082897 65083142 1.410000e-71 281.0
48 TraesCS5B01G504400 chr4B 86.770 257 22 3 4933 5188 65500559 65500804 6.560000e-70 276.0
49 TraesCS5B01G504400 chr7B 84.564 149 21 2 1952 2099 746316079 746316226 5.370000e-31 147.0
50 TraesCS5B01G504400 chr7B 91.398 93 3 3 354 441 450564937 450565029 9.050000e-24 122.0
51 TraesCS5B01G504400 chr2B 97.531 81 1 1 354 434 614917217 614917138 3.230000e-28 137.0
52 TraesCS5B01G504400 chr2B 85.271 129 14 4 1952 2077 260758216 260758090 1.940000e-25 128.0
53 TraesCS5B01G504400 chr3B 96.341 82 3 0 354 435 5175528 5175447 1.160000e-27 135.0
54 TraesCS5B01G504400 chr3B 97.436 78 1 1 354 431 669330989 669331065 1.500000e-26 132.0
55 TraesCS5B01G504400 chr3B 94.118 85 5 0 348 432 5175445 5175529 5.410000e-26 130.0
56 TraesCS5B01G504400 chr3B 94.048 84 3 1 350 431 825250112 825250029 6.990000e-25 126.0
57 TraesCS5B01G504400 chr6A 84.028 144 18 4 1952 2092 235489263 235489122 4.180000e-27 134.0
58 TraesCS5B01G504400 chr6A 84.028 144 18 4 1952 2092 243958431 243958290 4.180000e-27 134.0
59 TraesCS5B01G504400 chr3D 94.186 86 4 1 348 432 457400871 457400786 5.410000e-26 130.0
60 TraesCS5B01G504400 chr3D 82.895 152 19 5 1952 2098 563692621 563692472 5.410000e-26 130.0
61 TraesCS5B01G504400 chr7A 85.156 128 16 3 1956 2082 422830962 422830837 1.940000e-25 128.0
62 TraesCS5B01G504400 chr6D 93.023 86 2 2 354 439 298214080 298213999 9.050000e-24 122.0
63 TraesCS5B01G504400 chr6B 81.944 144 25 1 1950 2092 613586920 613587063 3.250000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G504400 chr5B 670532364 670539006 6642 False 12268.000000 12268 100.000000 1 6643 1 chr5B.!!$F2 6642
1 TraesCS5B01G504400 chr5B 670683935 670684839 904 False 756.000000 756 82.237000 2889 3774 1 chr5B.!!$F3 885
2 TraesCS5B01G504400 chr5B 18337638 18338455 817 False 273.333333 416 87.950333 4147 4977 3 chr5B.!!$F5 830
3 TraesCS5B01G504400 chr4A 641008099 641010911 2812 True 915.500000 1029 84.071000 2889 5646 2 chr4A.!!$R3 2757
4 TraesCS5B01G504400 chr4A 641248911 641255496 6585 True 912.822222 5000 88.686111 797 6643 9 chr4A.!!$R4 5846
5 TraesCS5B01G504400 chr4A 641067593 641068496 903 True 717.000000 717 81.461000 2889 3780 1 chr4A.!!$R1 891
6 TraesCS5B01G504400 chr4A 524285462 524286520 1058 False 485.500000 806 85.735000 4147 5188 2 chr4A.!!$F1 1041
7 TraesCS5B01G504400 chr5D 531403601 531406404 2803 False 903.000000 1048 83.949500 2889 5643 2 chr5D.!!$F3 2754
8 TraesCS5B01G504400 chr5D 531384588 531392574 7986 False 721.393333 4710 89.742933 1 6589 15 chr5D.!!$F2 6588
9 TraesCS5B01G504400 chr2A 702062663 702063688 1025 True 456.500000 754 85.296000 4147 5145 2 chr2A.!!$R1 998
10 TraesCS5B01G504400 chr4B 65082275 65083142 867 False 455.500000 630 86.131500 4282 5188 2 chr4B.!!$F1 906
11 TraesCS5B01G504400 chr4B 65499937 65500804 867 False 445.000000 614 85.699000 4282 5188 2 chr4B.!!$F2 906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 1390 0.242017 GCAGCTCATGAACCAACCAC 59.758 55.000 0.00 0.00 0.00 4.16 F
1576 2963 0.036858 GGAGTGGAGAGAACCAGCAC 60.037 60.000 0.00 0.00 40.85 4.40 F
1955 3344 0.107831 TGTGTCCAAGTGCACTACCC 59.892 55.000 22.01 6.79 36.63 3.69 F
1968 3357 0.195096 ACTACCCCCTCCTTCCACAA 59.805 55.000 0.00 0.00 0.00 3.33 F
3129 4643 0.172803 ACAGGTGCGACGATTCCTAC 59.827 55.000 0.00 0.00 0.00 3.18 F
3239 4756 2.555227 GGAGGAAAATGCAACTCCTGGA 60.555 50.000 16.85 0.00 0.00 3.86 F
4387 6060 1.417890 AGTGTGTCTGTTTCAGGAGGG 59.582 52.381 0.00 0.00 31.51 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 3337 0.546747 TGTGGAAGGAGGGGGTAGTG 60.547 60.000 0.00 0.00 0.00 2.74 R
2499 3903 0.673022 CAGTGCCTCCTCTTCACAGC 60.673 60.000 0.00 0.00 33.44 4.40 R
2799 4311 1.523758 ACTGGACGAAGGTTTCATGC 58.476 50.000 0.00 0.00 0.00 4.06 R
3218 4735 1.821136 CCAGGAGTTGCATTTTCCTCC 59.179 52.381 10.32 9.17 43.14 4.30 R
4039 5618 0.474184 ATACCCCAGCCAAGAATCCG 59.526 55.000 0.00 0.00 0.00 4.18 R
4540 6214 2.024369 TCCTCAGTACACAGGCATCCTA 60.024 50.000 5.42 0.00 29.64 2.94 R
6267 8623 1.304381 GAATTGACTGCCTGCCCCA 60.304 57.895 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.940470 CCCAATATGTATTACTTGCCTCTCC 59.060 44.000 0.00 0.00 0.00 3.71
29 30 7.038302 CCCAATATGTATTACTTGCCTCTCCTA 60.038 40.741 0.00 0.00 0.00 2.94
30 31 7.819900 CCAATATGTATTACTTGCCTCTCCTAC 59.180 40.741 0.00 0.00 0.00 3.18
39 40 3.759815 TGCCTCTCCTACCTCTAAGTT 57.240 47.619 0.00 0.00 0.00 2.66
90 91 2.933139 AGAACCCAAATACCCCCAATCT 59.067 45.455 0.00 0.00 0.00 2.40
103 104 1.063417 CCCAATCTCTTTGCATCCCCT 60.063 52.381 0.00 0.00 33.73 4.79
107 108 4.382362 CCAATCTCTTTGCATCCCCTTTTC 60.382 45.833 0.00 0.00 33.73 2.29
123 883 0.966875 TTTCGGCCATTGATGCAGCT 60.967 50.000 2.24 0.00 0.00 4.24
131 891 0.924823 ATTGATGCAGCTTCCCTCCT 59.075 50.000 2.53 0.00 0.00 3.69
158 918 1.281867 CCCTTTGGGTGCAGTCTATGA 59.718 52.381 0.00 0.00 38.25 2.15
196 956 9.113838 ACTAATGACTTGTCATATCCAAATGTC 57.886 33.333 15.50 0.00 0.00 3.06
204 964 0.250793 TATCCAAATGTCGCCACCGT 59.749 50.000 0.00 0.00 35.54 4.83
219 979 1.531748 CCGTGATGGTAAGGGGCAT 59.468 57.895 0.00 0.00 0.00 4.40
222 982 1.681780 CGTGATGGTAAGGGGCATTGT 60.682 52.381 0.00 0.00 0.00 2.71
235 995 0.801251 GCATTGTCTTGCGCTTCTCT 59.199 50.000 9.73 0.00 32.06 3.10
239 999 3.660501 TTGTCTTGCGCTTCTCTTCTA 57.339 42.857 9.73 0.00 0.00 2.10
241 1001 3.515630 TGTCTTGCGCTTCTCTTCTATG 58.484 45.455 9.73 0.00 0.00 2.23
265 1025 0.396435 TGTCCACCCATGTCTGTGAC 59.604 55.000 8.39 5.62 34.37 3.67
307 1067 6.317140 TCAACCATTGCATTACTCTCATCTTC 59.683 38.462 0.00 0.00 0.00 2.87
323 1083 7.665690 TCTCATCTTCTTATCTATCACAAGCC 58.334 38.462 0.00 0.00 0.00 4.35
324 1084 7.288621 TCTCATCTTCTTATCTATCACAAGCCA 59.711 37.037 0.00 0.00 0.00 4.75
332 1092 2.805671 TCTATCACAAGCCACGTTGTTG 59.194 45.455 0.00 0.00 38.65 3.33
337 1097 1.746220 ACAAGCCACGTTGTTGCTTTA 59.254 42.857 5.62 0.00 40.76 1.85
351 1111 7.219154 CGTTGTTGCTTTACTGACACAAAATTA 59.781 33.333 0.00 0.00 0.00 1.40
354 1114 8.894731 TGTTGCTTTACTGACACAAAATTAGTA 58.105 29.630 0.00 0.00 0.00 1.82
355 1115 9.166126 GTTGCTTTACTGACACAAAATTAGTAC 57.834 33.333 0.00 0.00 0.00 2.73
356 1116 8.671384 TGCTTTACTGACACAAAATTAGTACT 57.329 30.769 0.00 0.00 0.00 2.73
357 1117 9.116067 TGCTTTACTGACACAAAATTAGTACTT 57.884 29.630 0.00 0.00 0.00 2.24
358 1118 9.595357 GCTTTACTGACACAAAATTAGTACTTC 57.405 33.333 0.00 0.00 0.00 3.01
360 1120 9.841295 TTTACTGACACAAAATTAGTACTTCCT 57.159 29.630 0.00 0.00 0.00 3.36
361 1121 7.964604 ACTGACACAAAATTAGTACTTCCTC 57.035 36.000 0.00 0.00 0.00 3.71
362 1122 6.935208 ACTGACACAAAATTAGTACTTCCTCC 59.065 38.462 0.00 0.00 0.00 4.30
363 1123 5.929992 TGACACAAAATTAGTACTTCCTCCG 59.070 40.000 0.00 0.00 0.00 4.63
364 1124 5.861727 ACACAAAATTAGTACTTCCTCCGT 58.138 37.500 0.00 0.00 0.00 4.69
365 1125 5.930569 ACACAAAATTAGTACTTCCTCCGTC 59.069 40.000 0.00 0.00 0.00 4.79
366 1126 5.350640 CACAAAATTAGTACTTCCTCCGTCC 59.649 44.000 0.00 0.00 0.00 4.79
367 1127 4.750021 AAATTAGTACTTCCTCCGTCCC 57.250 45.455 0.00 0.00 0.00 4.46
368 1128 2.905415 TTAGTACTTCCTCCGTCCCA 57.095 50.000 0.00 0.00 0.00 4.37
369 1129 3.393426 TTAGTACTTCCTCCGTCCCAT 57.607 47.619 0.00 0.00 0.00 4.00
370 1130 4.524802 TTAGTACTTCCTCCGTCCCATA 57.475 45.455 0.00 0.00 0.00 2.74
371 1131 3.393426 AGTACTTCCTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
372 1132 3.924922 AGTACTTCCTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
373 1133 3.641906 AGTACTTCCTCCGTCCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
374 1134 2.478292 ACTTCCTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
375 1135 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
376 1136 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
377 1137 4.101119 ACTTCCTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
378 1138 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
379 1139 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
381 1141 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
382 1142 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
383 1143 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
384 1144 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
385 1145 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
423 1183 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
424 1184 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
425 1185 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
426 1186 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
427 1187 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
428 1188 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
429 1189 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
430 1190 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
437 1197 1.213926 GGACGGAGGGAGTAGTTAGGA 59.786 57.143 0.00 0.00 0.00 2.94
438 1198 2.357569 GGACGGAGGGAGTAGTTAGGAA 60.358 54.545 0.00 0.00 0.00 3.36
439 1199 3.564264 GACGGAGGGAGTAGTTAGGAAT 58.436 50.000 0.00 0.00 0.00 3.01
449 1209 8.440771 AGGGAGTAGTTAGGAATATGGATTTTG 58.559 37.037 0.00 0.00 0.00 2.44
450 1210 7.175119 GGGAGTAGTTAGGAATATGGATTTTGC 59.825 40.741 0.00 0.00 0.00 3.68
452 1212 7.816411 AGTAGTTAGGAATATGGATTTTGCCT 58.184 34.615 0.00 0.00 0.00 4.75
474 1234 0.470268 TTTGGGGTGTTGGTTAGGGC 60.470 55.000 0.00 0.00 0.00 5.19
490 1250 0.813821 GGGCTCCTGATTCTTTGCAC 59.186 55.000 0.00 0.00 0.00 4.57
491 1251 0.449388 GGCTCCTGATTCTTTGCACG 59.551 55.000 0.00 0.00 0.00 5.34
503 1263 2.393989 TTTGCACGCCGCGAATGAAA 62.394 50.000 21.79 6.21 46.97 2.69
510 1270 0.366534 GCCGCGAATGAAAATTGCAC 59.633 50.000 8.23 0.00 0.00 4.57
540 1301 9.815306 TTTATAGAGAGATGTAGCTTATGGAGT 57.185 33.333 0.00 0.00 0.00 3.85
541 1302 7.701539 ATAGAGAGATGTAGCTTATGGAGTG 57.298 40.000 0.00 0.00 0.00 3.51
560 1321 3.137544 AGTGTAGGTTGGGTGAACAATCA 59.862 43.478 0.00 0.00 36.12 2.57
570 1331 9.744468 GGTTGGGTGAACAATCAATATAATTAC 57.256 33.333 0.00 0.00 37.30 1.89
605 1366 8.961294 ATCTTTCTAGATTCAACTGGATTCAG 57.039 34.615 0.00 0.00 41.20 3.02
629 1390 0.242017 GCAGCTCATGAACCAACCAC 59.758 55.000 0.00 0.00 0.00 4.16
630 1391 1.901591 CAGCTCATGAACCAACCACT 58.098 50.000 0.00 0.00 0.00 4.00
686 1447 2.094234 GGATTGTGGTTTCAATTCCCGG 60.094 50.000 0.00 0.00 38.03 5.73
693 1454 2.764010 GGTTTCAATTCCCGGCCTTAAT 59.236 45.455 0.00 0.00 0.00 1.40
714 1475 4.497473 TTTTGCAAGGTTCGATTACTGG 57.503 40.909 0.00 0.00 0.00 4.00
730 1491 5.939764 TTACTGGTGCAGATATGTCTCTT 57.060 39.130 0.00 0.00 35.18 2.85
732 1493 5.528043 ACTGGTGCAGATATGTCTCTTAG 57.472 43.478 0.00 0.00 35.18 2.18
733 1494 4.959210 ACTGGTGCAGATATGTCTCTTAGT 59.041 41.667 0.00 0.00 35.18 2.24
734 1495 5.068460 ACTGGTGCAGATATGTCTCTTAGTC 59.932 44.000 0.00 0.00 35.18 2.59
735 1496 5.204292 TGGTGCAGATATGTCTCTTAGTCT 58.796 41.667 0.00 0.00 30.42 3.24
737 1498 6.833933 TGGTGCAGATATGTCTCTTAGTCTAA 59.166 38.462 0.00 0.00 30.42 2.10
738 1499 7.342026 TGGTGCAGATATGTCTCTTAGTCTAAA 59.658 37.037 0.00 0.00 30.42 1.85
790 1648 5.012893 AGGAGTGGAGCAAAGGAAAATAAG 58.987 41.667 0.00 0.00 0.00 1.73
794 2037 2.168521 GGAGCAAAGGAAAATAAGGGCC 59.831 50.000 0.00 0.00 0.00 5.80
795 2038 2.831526 GAGCAAAGGAAAATAAGGGCCA 59.168 45.455 6.18 0.00 0.00 5.36
803 2046 3.948473 GGAAAATAAGGGCCAGTTCTCTC 59.052 47.826 6.18 0.00 0.00 3.20
808 2051 0.397816 AGGGCCAGTTCTCTCGCTAT 60.398 55.000 6.18 0.00 0.00 2.97
822 2065 1.001268 TCGCTATCACGAGAAGATGGC 60.001 52.381 0.00 0.00 43.82 4.40
827 2070 2.169789 CACGAGAAGATGGCCTGCG 61.170 63.158 3.32 0.00 0.00 5.18
828 2071 2.185350 CGAGAAGATGGCCTGCGT 59.815 61.111 3.32 0.00 0.00 5.24
829 2072 1.320344 ACGAGAAGATGGCCTGCGTA 61.320 55.000 3.32 0.00 0.00 4.42
889 2133 1.134530 CATTCGTGTCTCGGTCTCGC 61.135 60.000 0.00 0.00 40.32 5.03
890 2134 1.306642 ATTCGTGTCTCGGTCTCGCT 61.307 55.000 0.00 0.00 40.32 4.93
896 2140 3.578272 CTCGGTCTCGCTCTCGGG 61.578 72.222 0.00 0.00 37.58 5.14
897 2141 4.405671 TCGGTCTCGCTCTCGGGT 62.406 66.667 0.00 0.00 37.48 5.28
898 2142 3.878519 CGGTCTCGCTCTCGGGTC 61.879 72.222 0.00 0.00 37.48 4.46
899 2143 2.438795 GGTCTCGCTCTCGGGTCT 60.439 66.667 0.00 0.00 37.48 3.85
900 2144 2.474612 GGTCTCGCTCTCGGGTCTC 61.475 68.421 0.00 0.00 37.48 3.36
901 2145 2.511829 TCTCGCTCTCGGGTCTCG 60.512 66.667 0.00 0.00 37.48 4.04
902 2146 4.244802 CTCGCTCTCGGGTCTCGC 62.245 72.222 0.00 0.00 39.05 5.03
922 2166 1.141449 CTCGGGAGCAGAAGCAGAG 59.859 63.158 0.00 0.00 45.49 3.35
923 2167 2.511145 CGGGAGCAGAAGCAGAGC 60.511 66.667 0.00 0.00 45.49 4.09
953 2200 1.903978 AAAAACCCCACCCAACCCCT 61.904 55.000 0.00 0.00 0.00 4.79
1000 2261 2.038975 CCTCGTCTCCTCCCCCAA 59.961 66.667 0.00 0.00 0.00 4.12
1001 2262 1.383248 CCTCGTCTCCTCCCCCAAT 60.383 63.158 0.00 0.00 0.00 3.16
1031 2297 4.426313 TCCGCCTCTCGCTCAGGA 62.426 66.667 0.00 0.00 36.73 3.86
1032 2298 3.898509 CCGCCTCTCGCTCAGGAG 61.899 72.222 0.00 0.00 36.73 3.69
1041 2307 4.925861 GCTCAGGAGATGCCCCGC 62.926 72.222 0.00 0.00 37.37 6.13
1239 2547 1.388547 TGGTTAGGGCATGATTTCGC 58.611 50.000 0.00 0.00 0.00 4.70
1381 2766 1.636769 GGGGTTTGGAGGCCTCTAGG 61.637 65.000 31.36 0.00 38.53 3.02
1438 2823 1.270305 TGAAACGAGCTGTCTTCCAGG 60.270 52.381 0.00 0.00 41.81 4.45
1469 2854 4.261197 GCAAAAGAATCCGTGAACAAGACT 60.261 41.667 0.00 0.00 0.00 3.24
1488 2873 7.175467 ACAAGACTGATAATCTGTGCAATTTCA 59.825 33.333 0.00 0.00 0.00 2.69
1524 2911 2.214216 TGCTTACCCTGCAGGACGT 61.214 57.895 34.91 25.16 39.89 4.34
1525 2912 1.448013 GCTTACCCTGCAGGACGTC 60.448 63.158 34.91 14.50 39.89 4.34
1576 2963 0.036858 GGAGTGGAGAGAACCAGCAC 60.037 60.000 0.00 0.00 40.85 4.40
1619 3006 1.070786 AACGGCTGTCAACATCGGT 59.929 52.632 0.00 2.34 0.00 4.69
1620 3007 0.319083 AACGGCTGTCAACATCGGTA 59.681 50.000 0.00 0.00 0.00 4.02
1670 3058 1.882623 GAGCTTTCACCTTGGTTCAGG 59.117 52.381 0.00 0.00 40.23 3.86
1718 3107 0.453390 GCCACTCTGCCAAAGTATGC 59.547 55.000 0.00 0.00 0.00 3.14
1719 3108 1.825090 CCACTCTGCCAAAGTATGCA 58.175 50.000 0.00 0.00 35.86 3.96
1720 3109 2.372264 CCACTCTGCCAAAGTATGCAT 58.628 47.619 3.79 3.79 36.79 3.96
1721 3110 3.544684 CCACTCTGCCAAAGTATGCATA 58.455 45.455 1.16 1.16 36.79 3.14
1722 3111 4.139786 CCACTCTGCCAAAGTATGCATAT 58.860 43.478 10.16 0.00 36.79 1.78
1723 3112 5.308014 CCACTCTGCCAAAGTATGCATATA 58.692 41.667 10.16 0.00 36.79 0.86
1724 3113 5.942236 CCACTCTGCCAAAGTATGCATATAT 59.058 40.000 10.16 0.00 36.79 0.86
1725 3114 6.432162 CCACTCTGCCAAAGTATGCATATATT 59.568 38.462 10.16 5.54 36.79 1.28
1726 3115 7.361542 CCACTCTGCCAAAGTATGCATATATTC 60.362 40.741 10.16 0.00 36.79 1.75
1727 3116 6.656693 ACTCTGCCAAAGTATGCATATATTCC 59.343 38.462 10.16 0.00 36.79 3.01
1728 3117 5.945784 TCTGCCAAAGTATGCATATATTCCC 59.054 40.000 10.16 0.00 36.79 3.97
1729 3118 5.891198 TGCCAAAGTATGCATATATTCCCT 58.109 37.500 10.16 0.00 31.31 4.20
1730 3119 6.314120 TGCCAAAGTATGCATATATTCCCTT 58.686 36.000 10.16 4.52 31.31 3.95
1731 3120 6.782000 TGCCAAAGTATGCATATATTCCCTTT 59.218 34.615 10.16 10.31 31.31 3.11
1732 3121 7.289782 TGCCAAAGTATGCATATATTCCCTTTT 59.710 33.333 10.16 0.00 31.31 2.27
1733 3122 8.150296 GCCAAAGTATGCATATATTCCCTTTTT 58.850 33.333 10.16 0.00 0.00 1.94
1756 3145 7.706100 TTTTCTGTAACCCTGTTTACTTTGT 57.294 32.000 0.00 0.00 33.73 2.83
1757 3146 8.804912 TTTTCTGTAACCCTGTTTACTTTGTA 57.195 30.769 0.00 0.00 33.73 2.41
1758 3147 8.441312 TTTCTGTAACCCTGTTTACTTTGTAG 57.559 34.615 0.00 0.00 33.73 2.74
1759 3148 7.128234 TCTGTAACCCTGTTTACTTTGTAGT 57.872 36.000 0.00 0.00 38.44 2.73
1760 3149 8.248904 TCTGTAACCCTGTTTACTTTGTAGTA 57.751 34.615 0.00 0.00 35.78 1.82
1761 3150 8.143835 TCTGTAACCCTGTTTACTTTGTAGTAC 58.856 37.037 0.00 0.00 36.61 2.73
1762 3151 8.021898 TGTAACCCTGTTTACTTTGTAGTACT 57.978 34.615 0.00 0.00 36.61 2.73
1763 3152 8.485392 TGTAACCCTGTTTACTTTGTAGTACTT 58.515 33.333 0.00 0.00 36.61 2.24
1764 3153 9.330063 GTAACCCTGTTTACTTTGTAGTACTTT 57.670 33.333 0.00 0.00 36.61 2.66
1765 3154 7.797038 ACCCTGTTTACTTTGTAGTACTTTG 57.203 36.000 0.00 0.00 36.61 2.77
1766 3155 7.341030 ACCCTGTTTACTTTGTAGTACTTTGT 58.659 34.615 0.00 0.60 36.61 2.83
1767 3156 8.485392 ACCCTGTTTACTTTGTAGTACTTTGTA 58.515 33.333 0.00 0.00 36.61 2.41
1768 3157 8.768019 CCCTGTTTACTTTGTAGTACTTTGTAC 58.232 37.037 0.00 0.00 36.61 2.90
1769 3158 8.482429 CCTGTTTACTTTGTAGTACTTTGTACG 58.518 37.037 0.00 0.00 36.61 3.67
1770 3159 8.925161 TGTTTACTTTGTAGTACTTTGTACGT 57.075 30.769 0.00 0.00 36.61 3.57
1807 3196 6.017275 GGATGGAATAAGAGAATTGCAGAGTG 60.017 42.308 0.00 0.00 40.01 3.51
1816 3205 7.551035 AGAGAATTGCAGAGTGTTTGATATC 57.449 36.000 0.00 0.00 0.00 1.63
1866 3255 3.453717 ACTGATGCAGAGAGCCAAAGATA 59.546 43.478 0.82 0.00 44.83 1.98
1948 3337 3.733443 AAGGAAATTGTGTCCAAGTGC 57.267 42.857 0.00 0.00 37.65 4.40
1955 3344 0.107831 TGTGTCCAAGTGCACTACCC 59.892 55.000 22.01 6.79 36.63 3.69
1956 3345 0.605589 GTGTCCAAGTGCACTACCCC 60.606 60.000 22.01 9.54 33.22 4.95
1957 3346 1.002502 GTCCAAGTGCACTACCCCC 60.003 63.158 22.01 3.72 0.00 5.40
1958 3347 1.151899 TCCAAGTGCACTACCCCCT 60.152 57.895 22.01 0.00 0.00 4.79
1959 3348 1.198759 TCCAAGTGCACTACCCCCTC 61.199 60.000 22.01 0.00 0.00 4.30
1960 3349 1.299976 CAAGTGCACTACCCCCTCC 59.700 63.158 22.01 0.00 0.00 4.30
1961 3350 1.161113 AAGTGCACTACCCCCTCCT 59.839 57.895 22.01 0.00 0.00 3.69
1962 3351 0.475828 AAGTGCACTACCCCCTCCTT 60.476 55.000 22.01 0.00 0.00 3.36
1963 3352 0.910088 AGTGCACTACCCCCTCCTTC 60.910 60.000 20.16 0.00 0.00 3.46
1964 3353 1.615424 TGCACTACCCCCTCCTTCC 60.615 63.158 0.00 0.00 0.00 3.46
1965 3354 1.615424 GCACTACCCCCTCCTTCCA 60.615 63.158 0.00 0.00 0.00 3.53
1966 3355 1.911702 GCACTACCCCCTCCTTCCAC 61.912 65.000 0.00 0.00 0.00 4.02
1967 3356 0.546747 CACTACCCCCTCCTTCCACA 60.547 60.000 0.00 0.00 0.00 4.17
1968 3357 0.195096 ACTACCCCCTCCTTCCACAA 59.805 55.000 0.00 0.00 0.00 3.33
1969 3358 1.203570 ACTACCCCCTCCTTCCACAAT 60.204 52.381 0.00 0.00 0.00 2.71
1970 3359 1.923148 CTACCCCCTCCTTCCACAATT 59.077 52.381 0.00 0.00 0.00 2.32
1971 3360 2.068831 ACCCCCTCCTTCCACAATTA 57.931 50.000 0.00 0.00 0.00 1.40
1972 3361 2.584773 ACCCCCTCCTTCCACAATTAT 58.415 47.619 0.00 0.00 0.00 1.28
1973 3362 3.754976 ACCCCCTCCTTCCACAATTATA 58.245 45.455 0.00 0.00 0.00 0.98
1974 3363 4.123745 ACCCCCTCCTTCCACAATTATAA 58.876 43.478 0.00 0.00 0.00 0.98
1975 3364 4.168088 ACCCCCTCCTTCCACAATTATAAG 59.832 45.833 0.00 0.00 0.00 1.73
1976 3365 4.415512 CCCCCTCCTTCCACAATTATAAGA 59.584 45.833 0.00 0.00 0.00 2.10
1977 3366 5.075067 CCCCCTCCTTCCACAATTATAAGAT 59.925 44.000 0.00 0.00 0.00 2.40
1978 3367 6.006449 CCCCTCCTTCCACAATTATAAGATG 58.994 44.000 0.00 0.00 0.00 2.90
1979 3368 6.410853 CCCCTCCTTCCACAATTATAAGATGT 60.411 42.308 1.82 1.82 0.00 3.06
1980 3369 7.062957 CCCTCCTTCCACAATTATAAGATGTT 58.937 38.462 4.41 0.00 0.00 2.71
1981 3370 7.229506 CCCTCCTTCCACAATTATAAGATGTTC 59.770 40.741 4.41 0.00 0.00 3.18
1982 3371 7.995488 CCTCCTTCCACAATTATAAGATGTTCT 59.005 37.037 4.41 0.00 0.00 3.01
1985 3374 8.778358 CCTTCCACAATTATAAGATGTTCTAGC 58.222 37.037 4.41 0.00 0.00 3.42
1986 3375 9.330063 CTTCCACAATTATAAGATGTTCTAGCA 57.670 33.333 4.41 0.00 0.00 3.49
1987 3376 8.893219 TCCACAATTATAAGATGTTCTAGCAG 57.107 34.615 4.41 0.00 0.00 4.24
2109 3511 7.557724 AGGAAGTATCTTTTACAGCTAGGAAC 58.442 38.462 0.00 0.00 0.00 3.62
2122 3524 2.863137 GCTAGGAACTGAAGCTCATTCG 59.137 50.000 0.00 0.00 41.52 3.34
2423 3827 2.816672 GAGTTTCAAAGGCCTGAGAAGG 59.183 50.000 5.69 0.00 0.00 3.46
2431 3835 1.194781 GGCCTGAGAAGGGTCACAGA 61.195 60.000 0.00 0.00 43.07 3.41
2499 3903 9.663904 TGAAAATTCTAAAGTGAAGTTCATTCG 57.336 29.630 9.18 0.00 41.14 3.34
2511 3915 2.300152 AGTTCATTCGCTGTGAAGAGGA 59.700 45.455 9.71 4.56 40.65 3.71
2512 3916 2.662006 TCATTCGCTGTGAAGAGGAG 57.338 50.000 9.71 0.00 40.65 3.69
2653 4057 0.689080 ATCCTGCATCTCCTCCACGT 60.689 55.000 0.00 0.00 0.00 4.49
2698 4102 0.326904 AGGTCCATCCTGCATCTCCA 60.327 55.000 0.00 0.00 46.19 3.86
2699 4103 0.548031 GGTCCATCCTGCATCTCCAA 59.452 55.000 0.00 0.00 0.00 3.53
2734 4243 1.078823 TCACCCAGTAGACAGGTCCAT 59.921 52.381 0.00 0.00 0.00 3.41
2795 4307 0.842635 GGTTCATCCTGCATCTCCCT 59.157 55.000 0.00 0.00 0.00 4.20
2799 4311 1.767088 TCATCCTGCATCTCCCTCAAG 59.233 52.381 0.00 0.00 0.00 3.02
2825 4337 3.611766 AACCTTCGTCCAGTATGAAGG 57.388 47.619 19.68 19.68 40.24 3.46
2842 4354 2.570386 AGGGCATACTTCCCAGTAGT 57.430 50.000 0.48 0.00 46.36 2.73
2927 4439 2.499289 AGTAGGAGTGATGGTCAAGCAG 59.501 50.000 0.00 0.00 0.00 4.24
3129 4643 0.172803 ACAGGTGCGACGATTCCTAC 59.827 55.000 0.00 0.00 0.00 3.18
3160 4674 8.388103 CCACATAATACAAAAGGAGAAGTTACG 58.612 37.037 0.00 0.00 0.00 3.18
3162 4676 9.367444 ACATAATACAAAAGGAGAAGTTACGAG 57.633 33.333 0.00 0.00 0.00 4.18
3218 4735 2.877168 GAGAAGGTAGCCAATGCAGATG 59.123 50.000 0.00 0.00 41.13 2.90
3239 4756 2.555227 GGAGGAAAATGCAACTCCTGGA 60.555 50.000 16.85 0.00 0.00 3.86
3491 5016 7.931578 TGGTTATGACGGTCTATTTTTGAAT 57.068 32.000 9.88 0.00 0.00 2.57
3638 5163 3.316573 GACGCCCTCCACCAGAAGG 62.317 68.421 0.00 0.00 42.21 3.46
3833 5375 3.777106 TGCTTCAACTTCTCCATCTGT 57.223 42.857 0.00 0.00 0.00 3.41
4010 5560 9.912634 CCAGAAATTAGCTGATTTTCTACAAAA 57.087 29.630 16.68 0.00 36.19 2.44
4039 5618 3.933332 GCTCAAGTAGTATGGGTGTGTTC 59.067 47.826 0.00 0.00 0.00 3.18
4101 5680 6.405286 CGATTGGTATTTGGCAAATTGGTAGA 60.405 38.462 28.56 8.65 32.38 2.59
4132 5711 2.113860 TACTTGCTTTGCAGGCTAGG 57.886 50.000 21.29 11.78 39.28 3.02
4139 5718 3.750599 TGCTTTGCAGGCTAGGTAACTTT 60.751 43.478 13.44 0.00 40.50 2.66
4196 5780 9.178758 GTGATTGATAAAATGGAGTAGGAGTTT 57.821 33.333 0.00 0.00 0.00 2.66
4333 6006 4.389077 GCCTAAGTGGATTCGATTATTCGG 59.611 45.833 7.14 0.00 41.26 4.30
4362 6035 6.681777 AGCAAAGTAAGATTAGCAAAAGGTG 58.318 36.000 0.00 0.00 0.00 4.00
4387 6060 1.417890 AGTGTGTCTGTTTCAGGAGGG 59.582 52.381 0.00 0.00 31.51 4.30
4490 6163 6.896883 ACATTTTGGGTAGTCTAATACTCCC 58.103 40.000 0.00 0.00 41.96 4.30
4540 6214 2.695147 GGGAATCGCCATTTCAGGATTT 59.305 45.455 0.00 0.00 38.95 2.17
4570 6245 4.444306 CCTGTGTACTGAGGAAACCAAGAA 60.444 45.833 5.09 0.00 0.00 2.52
4666 6400 2.234168 GTCCCTGTGAACTCCTTACTCC 59.766 54.545 0.00 0.00 0.00 3.85
4694 6428 1.270571 TGCGACTGTGCCAAGTTGATA 60.271 47.619 3.87 0.00 33.96 2.15
4727 6463 6.212791 TGAGGGTACATCTTAATATGCTACCC 59.787 42.308 24.96 24.96 44.17 3.69
4728 6464 6.088819 AGGGTACATCTTAATATGCTACCCA 58.911 40.000 28.82 4.45 45.01 4.51
4834 6584 5.182001 AGTTGTCCATTTTCTAGCATCACAC 59.818 40.000 0.00 0.00 0.00 3.82
4904 6657 6.071728 CCTTTGTTATGCTCTGACATTCCTTT 60.072 38.462 0.00 0.00 0.00 3.11
4926 6679 3.763897 TGCTTTTTAGGGGATGCTTTCTC 59.236 43.478 0.00 0.00 0.00 2.87
5002 6784 5.047306 TCTGTAGTATCACCCAGAGTTTGTG 60.047 44.000 0.00 0.00 30.80 3.33
5100 6882 6.406370 TGACGAATTCTGTCCAGTTTATGAT 58.594 36.000 20.23 0.00 35.46 2.45
5213 6997 3.867857 TGACCTTGTTTATAGCATGCGA 58.132 40.909 13.01 7.70 0.00 5.10
5224 7008 9.435688 TGTTTATAGCATGCGATTCATATACTT 57.564 29.630 18.74 0.00 33.19 2.24
5297 7082 2.624169 GCTTGGAGGCGTACAACAA 58.376 52.632 0.00 0.00 0.00 2.83
5399 7184 6.590292 TGTTAGTGCTCTTACTCTGTATTTGC 59.410 38.462 6.50 0.00 32.19 3.68
5400 7185 4.508662 AGTGCTCTTACTCTGTATTTGCC 58.491 43.478 0.00 0.00 0.00 4.52
5401 7186 4.223923 AGTGCTCTTACTCTGTATTTGCCT 59.776 41.667 0.00 0.00 0.00 4.75
5402 7187 5.422331 AGTGCTCTTACTCTGTATTTGCCTA 59.578 40.000 0.00 0.00 0.00 3.93
5403 7188 6.098982 AGTGCTCTTACTCTGTATTTGCCTAT 59.901 38.462 0.00 0.00 0.00 2.57
5404 7189 6.763610 GTGCTCTTACTCTGTATTTGCCTATT 59.236 38.462 0.00 0.00 0.00 1.73
5405 7190 7.281100 GTGCTCTTACTCTGTATTTGCCTATTT 59.719 37.037 0.00 0.00 0.00 1.40
5406 7191 7.280876 TGCTCTTACTCTGTATTTGCCTATTTG 59.719 37.037 0.00 0.00 0.00 2.32
5569 7359 3.383698 AACAGGGATAGACGGAGAGAA 57.616 47.619 0.00 0.00 0.00 2.87
5574 7364 4.218852 CAGGGATAGACGGAGAGAATTACC 59.781 50.000 0.00 0.00 0.00 2.85
5720 7510 7.042925 GCAAATTATGGTGCTCATGAAAGATTC 60.043 37.037 0.00 0.00 37.78 2.52
5728 7518 6.971184 GGTGCTCATGAAAGATTCAGTTAATG 59.029 38.462 0.00 0.00 43.98 1.90
5791 7581 6.925610 TCTGGTGTCTGCATTATTATTCAC 57.074 37.500 0.00 0.00 0.00 3.18
5792 7582 6.413892 TCTGGTGTCTGCATTATTATTCACA 58.586 36.000 0.00 0.00 0.00 3.58
5795 7585 6.883756 TGGTGTCTGCATTATTATTCACAGAA 59.116 34.615 0.00 0.00 36.05 3.02
5819 7609 5.241949 ACCTGCAATCCTCGTAGAATACTAG 59.758 44.000 0.00 0.00 40.12 2.57
5942 8003 2.093181 CCGGGATTACATGAGTGAACCA 60.093 50.000 0.00 0.00 0.00 3.67
6041 8104 9.541143 TTTTTCAGTTTGATTTGATTCCCTAAC 57.459 29.630 0.00 0.00 0.00 2.34
6239 8595 3.364889 CATGCGAATCATGCCAGATTT 57.635 42.857 2.71 0.00 45.20 2.17
6267 8623 6.515272 AAATCGTCAAATTAATCCTGTGCT 57.485 33.333 0.00 0.00 0.00 4.40
6295 8651 0.460284 CAGTCAATTCGAGGGACGGG 60.460 60.000 7.31 2.26 42.82 5.28
6299 8655 0.460284 CAATTCGAGGGACGGGTGAG 60.460 60.000 0.00 0.00 42.82 3.51
6300 8656 1.614241 AATTCGAGGGACGGGTGAGG 61.614 60.000 0.00 0.00 42.82 3.86
6301 8657 2.509931 ATTCGAGGGACGGGTGAGGA 62.510 60.000 0.00 0.00 42.82 3.71
6302 8658 2.442272 CGAGGGACGGGTGAGGAT 60.442 66.667 0.00 0.00 38.46 3.24
6381 8737 1.270907 AATCCACTCGAGCTCCTTGT 58.729 50.000 13.61 1.44 0.00 3.16
6446 8802 8.654230 AGATTGTCATGTCAGTGTAATATGTC 57.346 34.615 0.00 0.00 0.00 3.06
6494 8850 1.095228 TGGCGTATTGCTGCTAAGGC 61.095 55.000 0.00 1.42 45.43 4.35
6507 8863 2.010544 GCTAAGGCGGGGAAGTGTTAC 61.011 57.143 0.00 0.00 0.00 2.50
6522 8879 6.703165 GGAAGTGTTACGACTTAGGAAGAAAA 59.297 38.462 0.00 0.00 36.27 2.29
6523 8880 7.387122 GGAAGTGTTACGACTTAGGAAGAAAAT 59.613 37.037 0.00 0.00 36.27 1.82
6577 8938 9.561069 GATACAAGTATTATGAGGGTTGTCAAT 57.439 33.333 0.00 0.00 30.97 2.57
6589 8950 7.010160 TGAGGGTTGTCAATTTAGGAAGAAAT 58.990 34.615 0.00 0.00 0.00 2.17
6590 8951 7.039784 TGAGGGTTGTCAATTTAGGAAGAAATG 60.040 37.037 0.00 0.00 0.00 2.32
6591 8952 5.869344 GGGTTGTCAATTTAGGAAGAAATGC 59.131 40.000 0.00 0.00 0.00 3.56
6592 8953 6.295292 GGGTTGTCAATTTAGGAAGAAATGCT 60.295 38.462 0.00 0.00 0.00 3.79
6593 8954 6.808704 GGTTGTCAATTTAGGAAGAAATGCTC 59.191 38.462 0.00 0.00 0.00 4.26
6595 8956 6.248433 TGTCAATTTAGGAAGAAATGCTCCT 58.752 36.000 0.00 0.00 36.45 3.69
6597 8958 5.888161 TCAATTTAGGAAGAAATGCTCCTCC 59.112 40.000 0.00 0.00 35.12 4.30
6598 8959 3.543680 TTAGGAAGAAATGCTCCTCCG 57.456 47.619 0.00 0.00 39.41 4.63
6599 8960 1.573108 AGGAAGAAATGCTCCTCCGA 58.427 50.000 0.00 0.00 39.41 4.55
6600 8961 2.122768 AGGAAGAAATGCTCCTCCGAT 58.877 47.619 0.00 0.00 39.41 4.18
6602 8963 3.711704 AGGAAGAAATGCTCCTCCGATTA 59.288 43.478 0.00 0.00 39.41 1.75
6603 8964 4.061596 GGAAGAAATGCTCCTCCGATTAG 58.938 47.826 0.00 0.00 0.00 1.73
6634 9270 1.135859 GCTATGCCAATATGCAGCGAC 60.136 52.381 0.00 0.00 45.93 5.19
6637 9273 0.178767 TGCCAATATGCAGCGACTCT 59.821 50.000 0.00 0.00 36.04 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.940470 GGAGAGGCAAGTAATACATATTGGG 59.060 44.000 0.00 0.00 0.00 4.12
20 21 4.383226 CCAAAACTTAGAGGTAGGAGAGGC 60.383 50.000 0.00 0.00 0.00 4.70
27 28 5.024118 TCTCCTCCCAAAACTTAGAGGTAG 58.976 45.833 4.91 2.47 45.16 3.18
29 30 3.841255 CTCTCCTCCCAAAACTTAGAGGT 59.159 47.826 4.91 0.00 45.16 3.85
30 31 3.198853 CCTCTCCTCCCAAAACTTAGAGG 59.801 52.174 0.00 0.00 46.11 3.69
39 40 0.338467 TCCGATCCTCTCCTCCCAAA 59.662 55.000 0.00 0.00 0.00 3.28
75 76 3.768757 TGCAAAGAGATTGGGGGTATTTG 59.231 43.478 0.00 0.00 39.54 2.32
81 82 1.406903 GGATGCAAAGAGATTGGGGG 58.593 55.000 0.00 0.00 39.54 5.40
90 91 1.544724 CCGAAAAGGGGATGCAAAGA 58.455 50.000 0.00 0.00 35.97 2.52
103 104 0.108709 GCTGCATCAATGGCCGAAAA 60.109 50.000 0.00 0.00 0.00 2.29
107 108 1.065273 GAAGCTGCATCAATGGCCG 59.935 57.895 1.02 0.00 0.00 6.13
123 883 1.848835 AAGGGGATGGGAGGAGGGAA 61.849 60.000 0.00 0.00 0.00 3.97
146 906 7.978975 AGTAAGAAGAAGAATCATAGACTGCAC 59.021 37.037 0.00 0.00 0.00 4.57
190 950 1.305219 CCATCACGGTGGCGACATTT 61.305 55.000 8.50 0.00 46.14 2.32
204 964 1.922447 AGACAATGCCCCTTACCATCA 59.078 47.619 0.00 0.00 0.00 3.07
219 979 2.533266 AGAAGAGAAGCGCAAGACAA 57.467 45.000 11.47 0.00 43.02 3.18
222 982 2.739932 GCCATAGAAGAGAAGCGCAAGA 60.740 50.000 11.47 0.00 43.02 3.02
235 995 1.638070 TGGGTGGACAATGCCATAGAA 59.362 47.619 0.18 0.00 40.68 2.10
239 999 0.041535 ACATGGGTGGACAATGCCAT 59.958 50.000 0.00 0.00 40.68 4.40
241 1001 0.323725 AGACATGGGTGGACAATGCC 60.324 55.000 0.00 0.00 0.00 4.40
283 1043 6.318144 AGAAGATGAGAGTAATGCAATGGTTG 59.682 38.462 0.00 0.00 0.00 3.77
284 1044 6.421485 AGAAGATGAGAGTAATGCAATGGTT 58.579 36.000 0.00 0.00 0.00 3.67
287 1047 9.491675 AGATAAGAAGATGAGAGTAATGCAATG 57.508 33.333 0.00 0.00 0.00 2.82
307 1067 4.870426 ACAACGTGGCTTGTGATAGATAAG 59.130 41.667 0.00 0.00 32.95 1.73
323 1083 3.181515 TGTGTCAGTAAAGCAACAACGTG 60.182 43.478 0.00 0.00 0.00 4.49
324 1084 3.004171 TGTGTCAGTAAAGCAACAACGT 58.996 40.909 0.00 0.00 0.00 3.99
332 1092 9.595357 GAAGTACTAATTTTGTGTCAGTAAAGC 57.405 33.333 0.00 0.00 0.00 3.51
337 1097 6.935208 GGAGGAAGTACTAATTTTGTGTCAGT 59.065 38.462 0.00 0.00 0.00 3.41
351 1111 3.393426 TTATGGGACGGAGGAAGTACT 57.607 47.619 0.00 0.00 0.00 2.73
354 1114 2.478292 ACATTATGGGACGGAGGAAGT 58.522 47.619 0.00 0.00 0.00 3.01
355 1115 4.344102 TCTTACATTATGGGACGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
356 1116 4.100498 GTCTTACATTATGGGACGGAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
357 1117 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
358 1118 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
359 1119 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
360 1120 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
398 1158 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
399 1159 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
400 1160 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
401 1161 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
402 1162 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
404 1164 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
405 1165 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
406 1166 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
407 1167 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
408 1168 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
409 1169 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
410 1170 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
411 1171 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
412 1172 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
413 1173 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
414 1174 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
415 1175 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
416 1176 1.689984 CTAACTACTCCCTCCGTCCC 58.310 60.000 0.00 0.00 0.00 4.46
417 1177 1.213926 TCCTAACTACTCCCTCCGTCC 59.786 57.143 0.00 0.00 0.00 4.79
418 1178 2.725221 TCCTAACTACTCCCTCCGTC 57.275 55.000 0.00 0.00 0.00 4.79
419 1179 3.684408 ATTCCTAACTACTCCCTCCGT 57.316 47.619 0.00 0.00 0.00 4.69
420 1180 4.463186 CCATATTCCTAACTACTCCCTCCG 59.537 50.000 0.00 0.00 0.00 4.63
421 1181 5.652324 TCCATATTCCTAACTACTCCCTCC 58.348 45.833 0.00 0.00 0.00 4.30
422 1182 7.800300 AATCCATATTCCTAACTACTCCCTC 57.200 40.000 0.00 0.00 0.00 4.30
423 1183 8.440771 CAAAATCCATATTCCTAACTACTCCCT 58.559 37.037 0.00 0.00 0.00 4.20
424 1184 7.175119 GCAAAATCCATATTCCTAACTACTCCC 59.825 40.741 0.00 0.00 0.00 4.30
425 1185 7.175119 GGCAAAATCCATATTCCTAACTACTCC 59.825 40.741 0.00 0.00 0.00 3.85
426 1186 7.939588 AGGCAAAATCCATATTCCTAACTACTC 59.060 37.037 0.00 0.00 0.00 2.59
427 1187 7.816411 AGGCAAAATCCATATTCCTAACTACT 58.184 34.615 0.00 0.00 0.00 2.57
428 1188 8.465273 AAGGCAAAATCCATATTCCTAACTAC 57.535 34.615 0.00 0.00 0.00 2.73
429 1189 9.487442 AAAAGGCAAAATCCATATTCCTAACTA 57.513 29.630 0.00 0.00 0.00 2.24
430 1190 7.978099 AAAGGCAAAATCCATATTCCTAACT 57.022 32.000 0.00 0.00 0.00 2.24
457 1217 1.776710 AGCCCTAACCAACACCCCA 60.777 57.895 0.00 0.00 0.00 4.96
474 1234 0.449388 GGCGTGCAAAGAATCAGGAG 59.551 55.000 0.00 0.00 0.00 3.69
490 1250 1.069924 TGCAATTTTCATTCGCGGCG 61.070 50.000 17.70 17.70 0.00 6.46
491 1251 0.366534 GTGCAATTTTCATTCGCGGC 59.633 50.000 6.13 0.00 0.00 6.53
524 1285 5.793030 ACCTACACTCCATAAGCTACATC 57.207 43.478 0.00 0.00 0.00 3.06
528 1289 3.709653 CCCAACCTACACTCCATAAGCTA 59.290 47.826 0.00 0.00 0.00 3.32
529 1290 2.505819 CCCAACCTACACTCCATAAGCT 59.494 50.000 0.00 0.00 0.00 3.74
534 1295 2.038863 TCACCCAACCTACACTCCAT 57.961 50.000 0.00 0.00 0.00 3.41
536 1297 1.418637 TGTTCACCCAACCTACACTCC 59.581 52.381 0.00 0.00 33.51 3.85
540 1301 3.866703 TGATTGTTCACCCAACCTACA 57.133 42.857 0.00 0.00 33.51 2.74
541 1302 8.514330 TTATATTGATTGTTCACCCAACCTAC 57.486 34.615 0.00 0.00 33.51 3.18
591 1352 1.887956 GCCAGGCTGAATCCAGTTGAA 60.888 52.381 17.94 0.00 42.35 2.69
598 1359 1.823041 GAGCTGCCAGGCTGAATCC 60.823 63.158 22.08 4.13 43.20 3.01
603 1364 1.378119 TTCATGAGCTGCCAGGCTG 60.378 57.895 14.15 14.07 43.20 4.85
605 1366 2.413142 GGTTCATGAGCTGCCAGGC 61.413 63.158 3.66 3.66 0.00 4.85
629 1390 8.800332 AGAATGAAATTATATTGGGCTAGCAAG 58.200 33.333 18.24 0.00 36.07 4.01
630 1391 8.710749 AGAATGAAATTATATTGGGCTAGCAA 57.289 30.769 18.24 3.14 36.07 3.91
661 1422 4.401202 GGGAATTGAAACCACAATCCGTAT 59.599 41.667 0.00 0.00 39.19 3.06
665 1426 2.094234 CCGGGAATTGAAACCACAATCC 60.094 50.000 0.00 0.00 39.19 3.01
667 1428 1.275010 GCCGGGAATTGAAACCACAAT 59.725 47.619 2.18 0.00 41.43 2.71
669 1430 1.182385 GGCCGGGAATTGAAACCACA 61.182 55.000 2.18 0.00 0.00 4.17
686 1447 3.908213 TCGAACCTTGCAAAATTAAGGC 58.092 40.909 0.00 0.00 45.83 4.35
693 1454 3.886505 ACCAGTAATCGAACCTTGCAAAA 59.113 39.130 0.00 0.00 0.00 2.44
714 1475 9.190858 CATTTAGACTAAGAGACATATCTGCAC 57.809 37.037 0.00 0.00 34.34 4.57
764 1622 1.078848 CCTTTGCTCCACTCCTCCG 60.079 63.158 0.00 0.00 0.00 4.63
790 1648 0.032815 GATAGCGAGAGAACTGGCCC 59.967 60.000 0.00 0.00 46.44 5.80
803 2046 1.413382 GCCATCTTCTCGTGATAGCG 58.587 55.000 0.00 0.00 0.00 4.26
808 2051 1.219124 GCAGGCCATCTTCTCGTGA 59.781 57.895 5.01 0.00 0.00 4.35
817 2060 1.661821 CGCTACTACGCAGGCCATC 60.662 63.158 5.01 0.00 0.00 3.51
819 2062 1.750018 TACGCTACTACGCAGGCCA 60.750 57.895 5.01 0.00 36.19 5.36
821 2064 0.591741 CAGTACGCTACTACGCAGGC 60.592 60.000 0.00 0.00 37.23 4.85
822 2065 0.731417 ACAGTACGCTACTACGCAGG 59.269 55.000 0.00 0.00 37.23 4.85
827 2070 2.448726 CGTCCACAGTACGCTACTAC 57.551 55.000 0.00 0.00 37.23 2.73
866 2110 2.186903 CCGAGACACGAATGGGGG 59.813 66.667 0.00 0.00 45.77 5.40
867 2111 1.153628 GACCGAGACACGAATGGGG 60.154 63.158 0.00 0.00 45.77 4.96
868 2112 0.179134 GAGACCGAGACACGAATGGG 60.179 60.000 0.00 0.00 45.77 4.00
869 2113 0.523546 CGAGACCGAGACACGAATGG 60.524 60.000 0.00 0.00 45.77 3.16
870 2114 1.134530 GCGAGACCGAGACACGAATG 61.135 60.000 0.00 0.00 45.77 2.67
889 2133 2.530497 CGAGAGCGAGACCCGAGAG 61.530 68.421 0.00 0.00 41.76 3.20
890 2134 2.511829 CGAGAGCGAGACCCGAGA 60.512 66.667 0.00 0.00 41.76 4.04
902 2146 1.141449 CTGCTTCTGCTCCCGAGAG 59.859 63.158 0.00 0.00 43.57 3.20
922 2166 2.031012 GTTTTTGGCCCCTGCTGC 59.969 61.111 0.00 0.00 37.74 5.25
923 2167 2.743060 GGTTTTTGGCCCCTGCTG 59.257 61.111 0.00 0.00 37.74 4.41
1148 2454 2.825264 GAGAGGATGCGAAGGGGG 59.175 66.667 0.00 0.00 0.00 5.40
1149 2455 2.081425 CTCGAGAGGATGCGAAGGGG 62.081 65.000 6.58 0.00 35.95 4.79
1150 2456 1.361993 CTCGAGAGGATGCGAAGGG 59.638 63.158 6.58 0.00 35.95 3.95
1151 2457 1.299773 GCTCGAGAGGATGCGAAGG 60.300 63.158 18.75 0.00 35.95 3.46
1152 2458 0.031857 ATGCTCGAGAGGATGCGAAG 59.968 55.000 18.75 0.00 38.11 3.79
1216 2524 3.181497 CGAAATCATGCCCTAACCAACAG 60.181 47.826 0.00 0.00 0.00 3.16
1239 2547 4.253352 TCTCACAAAAGAAAACACGACG 57.747 40.909 0.00 0.00 0.00 5.12
1266 2603 1.227468 GTAGTCGAAATCCGCCCCC 60.227 63.158 0.00 0.00 38.37 5.40
1283 2662 0.734889 GCATACATGAAAGGCGCTGT 59.265 50.000 7.64 4.98 0.00 4.40
1381 2766 1.134848 GGTCAGACAGATCCAGTCAGC 60.135 57.143 15.77 4.78 38.46 4.26
1382 2767 2.174360 TGGTCAGACAGATCCAGTCAG 58.826 52.381 15.77 9.49 38.46 3.51
1383 2768 2.309136 TGGTCAGACAGATCCAGTCA 57.691 50.000 15.77 0.00 38.46 3.41
1424 2809 0.980423 AGAACCCTGGAAGACAGCTC 59.020 55.000 0.00 0.00 46.14 4.09
1426 2811 0.398318 ACAGAACCCTGGAAGACAGC 59.602 55.000 0.00 0.00 46.14 4.40
1438 2823 2.293399 ACGGATTCTTTTGCACAGAACC 59.707 45.455 9.27 11.02 33.04 3.62
1488 2873 6.543831 GGTAAGCAGAACCATCATCAAGTATT 59.456 38.462 0.00 0.00 36.96 1.89
1576 2963 2.009051 TGGATGCAGCTGAACATAACG 58.991 47.619 20.43 0.00 0.00 3.18
1619 3006 6.737608 ACAGGGTAAAGAAAAAGGGCATATA 58.262 36.000 0.00 0.00 0.00 0.86
1620 3007 5.589831 ACAGGGTAAAGAAAAAGGGCATAT 58.410 37.500 0.00 0.00 0.00 1.78
1692 3081 2.282040 GGCAGAGTGGCAAGCAGT 60.282 61.111 0.00 0.00 43.14 4.40
1731 3120 8.124808 ACAAAGTAAACAGGGTTACAGAAAAA 57.875 30.769 9.67 0.00 36.59 1.94
1732 3121 7.706100 ACAAAGTAAACAGGGTTACAGAAAA 57.294 32.000 9.67 0.00 36.59 2.29
1733 3122 8.048514 ACTACAAAGTAAACAGGGTTACAGAAA 58.951 33.333 9.67 0.00 36.59 2.52
1734 3123 7.567458 ACTACAAAGTAAACAGGGTTACAGAA 58.433 34.615 9.67 0.00 36.59 3.02
1735 3124 7.128234 ACTACAAAGTAAACAGGGTTACAGA 57.872 36.000 9.67 0.00 36.59 3.41
1736 3125 8.146412 AGTACTACAAAGTAAACAGGGTTACAG 58.854 37.037 9.67 0.99 39.90 2.74
1737 3126 8.021898 AGTACTACAAAGTAAACAGGGTTACA 57.978 34.615 9.67 0.00 39.90 2.41
1738 3127 8.893219 AAGTACTACAAAGTAAACAGGGTTAC 57.107 34.615 0.00 0.00 39.90 2.50
1739 3128 9.328845 CAAAGTACTACAAAGTAAACAGGGTTA 57.671 33.333 0.00 0.00 39.90 2.85
1740 3129 7.830697 ACAAAGTACTACAAAGTAAACAGGGTT 59.169 33.333 0.00 0.00 39.90 4.11
1741 3130 7.341030 ACAAAGTACTACAAAGTAAACAGGGT 58.659 34.615 0.00 0.00 39.90 4.34
1742 3131 7.797038 ACAAAGTACTACAAAGTAAACAGGG 57.203 36.000 0.00 0.00 39.90 4.45
1743 3132 8.482429 CGTACAAAGTACTACAAAGTAAACAGG 58.518 37.037 0.00 0.00 39.90 4.00
1744 3133 9.023967 ACGTACAAAGTACTACAAAGTAAACAG 57.976 33.333 0.00 0.00 39.90 3.16
1745 3134 8.925161 ACGTACAAAGTACTACAAAGTAAACA 57.075 30.769 0.00 0.00 39.90 2.83
1750 3139 9.748708 TTTCATACGTACAAAGTACTACAAAGT 57.251 29.630 0.00 0.00 39.91 2.66
1753 3142 8.649841 GCATTTCATACGTACAAAGTACTACAA 58.350 33.333 0.00 0.00 0.00 2.41
1754 3143 8.030692 AGCATTTCATACGTACAAAGTACTACA 58.969 33.333 0.00 0.00 0.00 2.74
1755 3144 8.403606 AGCATTTCATACGTACAAAGTACTAC 57.596 34.615 0.00 0.00 0.00 2.73
1756 3145 8.865978 CAAGCATTTCATACGTACAAAGTACTA 58.134 33.333 0.00 0.00 0.00 1.82
1757 3146 7.148474 CCAAGCATTTCATACGTACAAAGTACT 60.148 37.037 0.00 0.00 0.00 2.73
1758 3147 6.959311 CCAAGCATTTCATACGTACAAAGTAC 59.041 38.462 0.00 0.00 0.00 2.73
1759 3148 6.874664 TCCAAGCATTTCATACGTACAAAGTA 59.125 34.615 0.00 0.00 0.00 2.24
1760 3149 5.703592 TCCAAGCATTTCATACGTACAAAGT 59.296 36.000 0.00 0.00 0.00 2.66
1761 3150 6.176975 TCCAAGCATTTCATACGTACAAAG 57.823 37.500 0.00 0.00 0.00 2.77
1762 3151 6.404184 CCATCCAAGCATTTCATACGTACAAA 60.404 38.462 0.00 0.28 0.00 2.83
1763 3152 5.065859 CCATCCAAGCATTTCATACGTACAA 59.934 40.000 0.00 0.00 0.00 2.41
1764 3153 4.574421 CCATCCAAGCATTTCATACGTACA 59.426 41.667 0.00 0.00 0.00 2.90
1765 3154 4.814234 TCCATCCAAGCATTTCATACGTAC 59.186 41.667 0.00 0.00 0.00 3.67
1766 3155 5.029807 TCCATCCAAGCATTTCATACGTA 57.970 39.130 0.00 0.00 0.00 3.57
1767 3156 3.884895 TCCATCCAAGCATTTCATACGT 58.115 40.909 0.00 0.00 0.00 3.57
1768 3157 4.898829 TTCCATCCAAGCATTTCATACG 57.101 40.909 0.00 0.00 0.00 3.06
1769 3158 8.169977 TCTTATTCCATCCAAGCATTTCATAC 57.830 34.615 0.00 0.00 0.00 2.39
1770 3159 8.219868 TCTCTTATTCCATCCAAGCATTTCATA 58.780 33.333 0.00 0.00 0.00 2.15
1771 3160 7.064866 TCTCTTATTCCATCCAAGCATTTCAT 58.935 34.615 0.00 0.00 0.00 2.57
1772 3161 6.425735 TCTCTTATTCCATCCAAGCATTTCA 58.574 36.000 0.00 0.00 0.00 2.69
1773 3162 6.949352 TCTCTTATTCCATCCAAGCATTTC 57.051 37.500 0.00 0.00 0.00 2.17
1774 3163 7.909485 ATTCTCTTATTCCATCCAAGCATTT 57.091 32.000 0.00 0.00 0.00 2.32
1816 3205 7.999679 TCTATTGCAAAATCCATCCTAGTTTG 58.000 34.615 1.71 0.00 35.58 2.93
1866 3255 7.951347 AGGAATGCTTTGAGTCTAATTCAAT 57.049 32.000 0.00 0.00 34.76 2.57
1924 3313 5.183904 GCACTTGGACACAATTTCCTTAGAT 59.816 40.000 0.00 0.00 35.73 1.98
1928 3317 3.030291 TGCACTTGGACACAATTTCCTT 58.970 40.909 0.00 0.00 35.73 3.36
1948 3337 0.546747 TGTGGAAGGAGGGGGTAGTG 60.547 60.000 0.00 0.00 0.00 2.74
1955 3344 6.605119 ACATCTTATAATTGTGGAAGGAGGG 58.395 40.000 1.53 0.00 0.00 4.30
1956 3345 7.995488 AGAACATCTTATAATTGTGGAAGGAGG 59.005 37.037 2.86 0.00 0.00 4.30
1957 3346 8.970859 AGAACATCTTATAATTGTGGAAGGAG 57.029 34.615 2.86 0.00 0.00 3.69
1959 3348 8.778358 GCTAGAACATCTTATAATTGTGGAAGG 58.222 37.037 0.00 0.00 0.00 3.46
1960 3349 9.330063 TGCTAGAACATCTTATAATTGTGGAAG 57.670 33.333 0.00 2.91 0.00 3.46
1961 3350 9.330063 CTGCTAGAACATCTTATAATTGTGGAA 57.670 33.333 0.00 0.00 0.00 3.53
1962 3351 8.486210 ACTGCTAGAACATCTTATAATTGTGGA 58.514 33.333 0.00 0.00 0.00 4.02
1963 3352 8.668510 ACTGCTAGAACATCTTATAATTGTGG 57.331 34.615 0.00 0.00 0.00 4.17
1971 3360 9.678260 AAATCAGAAACTGCTAGAACATCTTAT 57.322 29.630 0.00 0.00 0.00 1.73
1972 3361 8.939929 CAAATCAGAAACTGCTAGAACATCTTA 58.060 33.333 0.00 0.00 0.00 2.10
1973 3362 7.094463 CCAAATCAGAAACTGCTAGAACATCTT 60.094 37.037 0.00 0.00 0.00 2.40
1974 3363 6.373774 CCAAATCAGAAACTGCTAGAACATCT 59.626 38.462 0.00 0.00 0.00 2.90
1975 3364 6.372659 TCCAAATCAGAAACTGCTAGAACATC 59.627 38.462 0.00 0.00 0.00 3.06
1976 3365 6.240894 TCCAAATCAGAAACTGCTAGAACAT 58.759 36.000 0.00 0.00 0.00 2.71
1977 3366 5.620206 TCCAAATCAGAAACTGCTAGAACA 58.380 37.500 0.00 0.00 0.00 3.18
1978 3367 6.150140 ACATCCAAATCAGAAACTGCTAGAAC 59.850 38.462 0.00 0.00 0.00 3.01
1979 3368 6.149973 CACATCCAAATCAGAAACTGCTAGAA 59.850 38.462 0.00 0.00 0.00 2.10
1980 3369 5.645067 CACATCCAAATCAGAAACTGCTAGA 59.355 40.000 0.00 0.00 0.00 2.43
1981 3370 5.413833 ACACATCCAAATCAGAAACTGCTAG 59.586 40.000 0.00 0.00 0.00 3.42
1982 3371 5.316167 ACACATCCAAATCAGAAACTGCTA 58.684 37.500 0.00 0.00 0.00 3.49
1983 3372 4.147321 ACACATCCAAATCAGAAACTGCT 58.853 39.130 0.00 0.00 0.00 4.24
1984 3373 4.510038 ACACATCCAAATCAGAAACTGC 57.490 40.909 0.00 0.00 0.00 4.40
1985 3374 9.559958 GTTTATACACATCCAAATCAGAAACTG 57.440 33.333 0.00 0.00 0.00 3.16
1986 3375 8.450964 CGTTTATACACATCCAAATCAGAAACT 58.549 33.333 0.00 0.00 0.00 2.66
1987 3376 7.218204 GCGTTTATACACATCCAAATCAGAAAC 59.782 37.037 0.00 0.00 0.00 2.78
2109 3511 4.934075 TTTCATGTCGAATGAGCTTCAG 57.066 40.909 9.27 0.00 33.10 3.02
2122 3524 9.474920 CAGAGAGGTAGATAGAATTTTCATGTC 57.525 37.037 0.00 0.00 0.00 3.06
2375 3779 3.998913 TTCACCTGCACCATGATTAGA 57.001 42.857 0.00 0.00 0.00 2.10
2431 3835 2.643801 ACCAATTTGATGGGCCACATTT 59.356 40.909 9.28 0.00 45.18 2.32
2499 3903 0.673022 CAGTGCCTCCTCTTCACAGC 60.673 60.000 0.00 0.00 33.44 4.40
2511 3915 3.088532 CTCTCTCTACTCAACAGTGCCT 58.911 50.000 0.00 0.00 33.62 4.75
2512 3916 2.165437 CCTCTCTCTACTCAACAGTGCC 59.835 54.545 0.00 0.00 33.62 5.01
2653 4057 7.161404 GTCTACTGGGTGATATGCATTTCATA 58.839 38.462 20.56 9.39 41.52 2.15
2698 4102 6.367983 ACTGGGTGATATGCATTTCATAGTT 58.632 36.000 20.56 9.28 40.69 2.24
2699 4103 5.945310 ACTGGGTGATATGCATTTCATAGT 58.055 37.500 20.56 19.72 40.69 2.12
2734 4243 4.842531 TTTCATAGTTGGAGATGCAGGA 57.157 40.909 0.00 0.00 0.00 3.86
2795 4307 2.151202 GGACGAAGGTTTCATGCTTGA 58.849 47.619 0.00 0.00 0.00 3.02
2799 4311 1.523758 ACTGGACGAAGGTTTCATGC 58.476 50.000 0.00 0.00 0.00 4.06
2825 4337 2.103263 CCTGACTACTGGGAAGTATGCC 59.897 54.545 0.00 0.00 37.61 4.40
2927 4439 3.296516 CGCATCGCTTCAAGGAAAC 57.703 52.632 0.00 0.00 0.00 2.78
3129 4643 7.786178 TCTCCTTTTGTATTATGTGGAATCG 57.214 36.000 0.00 0.00 0.00 3.34
3160 4674 2.430465 TGAAGCTGCTGGTCAATTCTC 58.570 47.619 1.35 0.00 0.00 2.87
3162 4676 2.816087 TCTTGAAGCTGCTGGTCAATTC 59.184 45.455 15.05 3.22 0.00 2.17
3218 4735 1.821136 CCAGGAGTTGCATTTTCCTCC 59.179 52.381 10.32 9.17 43.14 4.30
3239 4756 4.180377 TCCCAGTAGGTTGATCGTCTAT 57.820 45.455 0.00 0.00 36.75 1.98
3491 5016 9.639563 TGGAAATGGAATATAATCTGTTAGCAA 57.360 29.630 0.00 0.00 0.00 3.91
3638 5163 3.064545 GCATACTCACTTCCAGCAATGTC 59.935 47.826 0.00 0.00 0.00 3.06
3793 5334 4.400251 AGCAACAACACTATGGGAATCATG 59.600 41.667 0.00 0.00 37.30 3.07
3833 5375 8.164733 TGTTTTCCCATACTAAACCATCTACAA 58.835 33.333 0.00 0.00 32.25 2.41
4010 5560 6.493458 ACACCCATACTACTTGAGCAATTTTT 59.507 34.615 0.00 0.00 0.00 1.94
4039 5618 0.474184 ATACCCCAGCCAAGAATCCG 59.526 55.000 0.00 0.00 0.00 4.18
4170 5749 8.738645 AACTCCTACTCCATTTTATCAATCAC 57.261 34.615 0.00 0.00 0.00 3.06
4196 5780 7.010160 AGAATATTTTTCTGTTGGAACCAGGA 58.990 34.615 0.00 0.00 33.13 3.86
4237 5822 3.257393 CAGAAGGTTCGAGTGGATTCAG 58.743 50.000 0.00 0.00 0.00 3.02
4239 5824 2.996621 CACAGAAGGTTCGAGTGGATTC 59.003 50.000 9.27 0.00 35.73 2.52
4333 6006 7.611213 TTTGCTAATCTTACTTTGCTAGGAC 57.389 36.000 0.00 0.00 0.00 3.85
4362 6035 2.289002 CCTGAAACAGACACACTCTTGC 59.711 50.000 0.00 0.00 32.44 4.01
4461 6134 8.047310 AGTATTAGACTACCCAAAATGTCCAAG 58.953 37.037 0.00 0.00 36.27 3.61
4490 6163 4.394300 ACTGAATCTCATTGCGAAAAGGAG 59.606 41.667 6.61 6.61 0.00 3.69
4540 6214 2.024369 TCCTCAGTACACAGGCATCCTA 60.024 50.000 5.42 0.00 29.64 2.94
4666 6400 4.035558 ACTTGGCACAGTCGCATAATAATG 59.964 41.667 0.00 0.00 42.39 1.90
4727 6463 7.360269 GCTGAATTATGAAAACCCAACATTGTG 60.360 37.037 0.00 0.00 0.00 3.33
4728 6464 6.650390 GCTGAATTATGAAAACCCAACATTGT 59.350 34.615 0.00 0.00 0.00 2.71
4904 6657 3.763897 GAGAAAGCATCCCCTAAAAAGCA 59.236 43.478 0.00 0.00 0.00 3.91
5002 6784 3.051081 AGGCATCTTCTTGGCGATATC 57.949 47.619 0.00 0.00 46.11 1.63
5100 6882 5.721000 AGGGAAAAATATCAAGGCAATGTCA 59.279 36.000 0.00 0.00 0.00 3.58
5213 6997 9.209175 GAAAGAAGGCACGATAAGTATATGAAT 57.791 33.333 0.00 0.00 0.00 2.57
5224 7008 8.974060 ATATAAAAAGGAAAGAAGGCACGATA 57.026 30.769 0.00 0.00 0.00 2.92
5297 7082 9.923143 CATCAATATATGCCTTCATGACAAAAT 57.077 29.630 0.00 0.00 34.22 1.82
5569 7359 6.147437 TCACAAAAACTCCCCATAGGTAAT 57.853 37.500 0.00 0.00 36.75 1.89
5574 7364 3.193479 GGCTTCACAAAAACTCCCCATAG 59.807 47.826 0.00 0.00 0.00 2.23
5720 7510 3.974401 CCGTGTGAAAACAGCATTAACTG 59.026 43.478 0.00 0.00 43.59 3.16
5728 7518 1.923864 CCAAAACCGTGTGAAAACAGC 59.076 47.619 0.00 0.00 0.00 4.40
5791 7581 2.166459 TCTACGAGGATTGCAGGTTCTG 59.834 50.000 0.00 0.00 34.12 3.02
5792 7582 2.457598 TCTACGAGGATTGCAGGTTCT 58.542 47.619 0.00 0.00 0.00 3.01
5795 7585 3.961408 AGTATTCTACGAGGATTGCAGGT 59.039 43.478 0.00 0.00 0.00 4.00
5819 7609 7.467623 ACAAATGAAGCGAACATAAGAGATTC 58.532 34.615 0.00 0.00 0.00 2.52
5933 7994 2.282701 TAATACGCGGTGGTTCACTC 57.717 50.000 12.47 0.00 34.40 3.51
6106 8169 7.431960 CACACGATTATTCATACAACCAATTGG 59.568 37.037 23.31 23.31 40.42 3.16
6128 8484 4.067972 TCAGAACCCTAGTTTCACACAC 57.932 45.455 4.60 0.00 35.94 3.82
6244 8600 6.324819 CAGCACAGGATTAATTTGACGATTT 58.675 36.000 7.63 0.00 0.00 2.17
6267 8623 1.304381 GAATTGACTGCCTGCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
6381 8737 4.214310 TGGTTCATTTGAGCTTCCTTCAA 58.786 39.130 0.00 0.00 33.00 2.69
6446 8802 7.219535 GCAAATCAAGCATACAGAGTAACAATG 59.780 37.037 0.00 0.00 0.00 2.82
6494 8850 2.416431 CCTAAGTCGTAACACTTCCCCG 60.416 54.545 0.00 0.00 37.75 5.73
6507 8863 6.456181 GCATCACAGATTTTCTTCCTAAGTCG 60.456 42.308 0.00 0.00 0.00 4.18
6522 8879 2.736719 GCACGTCACTAGCATCACAGAT 60.737 50.000 0.00 0.00 0.00 2.90
6523 8880 1.402852 GCACGTCACTAGCATCACAGA 60.403 52.381 0.00 0.00 0.00 3.41
6589 8950 0.687757 ACAGCCTAATCGGAGGAGCA 60.688 55.000 3.44 0.00 39.15 4.26
6590 8951 0.466124 AACAGCCTAATCGGAGGAGC 59.534 55.000 3.44 0.00 39.15 4.70
6591 8952 1.069358 GGAACAGCCTAATCGGAGGAG 59.931 57.143 3.44 0.00 39.15 3.69
6592 8953 1.120530 GGAACAGCCTAATCGGAGGA 58.879 55.000 3.44 0.00 39.15 3.71
6593 8954 0.106894 GGGAACAGCCTAATCGGAGG 59.893 60.000 0.00 0.00 39.88 4.30
6595 8956 0.830648 CAGGGAACAGCCTAATCGGA 59.169 55.000 0.00 0.00 36.66 4.55
6597 8958 0.179000 AGCAGGGAACAGCCTAATCG 59.821 55.000 0.00 0.00 45.26 3.34
6598 8959 3.406764 CATAGCAGGGAACAGCCTAATC 58.593 50.000 0.00 0.00 45.26 1.75
6599 8960 2.487986 GCATAGCAGGGAACAGCCTAAT 60.488 50.000 0.00 0.00 45.26 1.73
6600 8961 1.134098 GCATAGCAGGGAACAGCCTAA 60.134 52.381 0.00 0.00 45.26 2.69
6602 8963 1.225704 GCATAGCAGGGAACAGCCT 59.774 57.895 0.00 0.00 45.26 4.58
6603 8964 1.825622 GGCATAGCAGGGAACAGCC 60.826 63.158 0.00 0.00 45.26 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.