Multiple sequence alignment - TraesCS5B01G504200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G504200 chr5B 100.000 2336 0 0 1 2336 670304090 670306425 0.000000e+00 4314.0
1 TraesCS5B01G504200 chr5B 97.248 1417 27 5 605 2021 670139049 670137645 0.000000e+00 2390.0
2 TraesCS5B01G504200 chr5B 86.748 981 54 14 626 1558 670246958 670246006 0.000000e+00 1022.0
3 TraesCS5B01G504200 chr5B 93.540 387 21 4 220 604 535391634 535392018 7.240000e-160 573.0
4 TraesCS5B01G504200 chr5B 92.784 388 23 4 220 603 602244080 602244466 7.290000e-155 556.0
5 TraesCS5B01G504200 chr5B 87.447 470 29 2 1581 2021 670240017 670239549 4.450000e-142 514.0
6 TraesCS5B01G504200 chr5B 96.226 212 7 1 1 211 670139254 670139043 1.720000e-91 346.0
7 TraesCS5B01G504200 chr5B 94.624 186 9 1 1380 1565 670136659 670136475 1.060000e-73 287.0
8 TraesCS5B01G504200 chr5B 93.478 184 12 0 1797 1980 670136842 670136659 8.220000e-70 274.0
9 TraesCS5B01G504200 chr5B 88.542 96 9 2 2005 2098 670238662 670238567 5.280000e-22 115.0
10 TraesCS5B01G504200 chr5D 88.172 930 49 30 677 1558 531203392 531202476 0.000000e+00 1051.0
11 TraesCS5B01G504200 chr5D 86.658 757 53 27 827 1558 531254636 531253903 0.000000e+00 795.0
12 TraesCS5B01G504200 chr5D 90.419 167 15 1 2023 2188 531196897 531196731 3.910000e-53 219.0
13 TraesCS5B01G504200 chr5D 90.968 155 10 2 679 829 531254843 531254689 3.040000e-49 206.0
14 TraesCS5B01G504200 chr5D 89.831 59 6 0 621 679 531206173 531206115 2.490000e-10 76.8
15 TraesCS5B01G504200 chr5D 95.556 45 2 0 1581 1625 531253584 531253540 3.220000e-09 73.1
16 TraesCS5B01G504200 chr4A 86.860 723 45 24 869 1558 641359473 641360178 0.000000e+00 763.0
17 TraesCS5B01G504200 chr4A 86.818 220 17 4 621 828 641358511 641358730 3.880000e-58 235.0
18 TraesCS5B01G504200 chr4A 87.097 186 19 5 2006 2188 641378121 641378304 3.040000e-49 206.0
19 TraesCS5B01G504200 chr7B 93.830 389 20 3 220 604 730902837 730902449 1.200000e-162 582.0
20 TraesCS5B01G504200 chr7B 92.268 388 27 3 220 604 21314817 21314430 4.390000e-152 547.0
21 TraesCS5B01G504200 chr7B 91.214 387 31 3 220 605 4009833 4010217 7.400000e-145 523.0
22 TraesCS5B01G504200 chr7B 90.000 80 7 1 2241 2319 446646072 446645993 4.110000e-18 102.0
23 TraesCS5B01G504200 chr2B 93.846 390 19 5 220 606 592320817 592321204 1.200000e-162 582.0
24 TraesCS5B01G504200 chr4B 92.408 382 18 6 227 604 117380371 117379997 3.420000e-148 534.0
25 TraesCS5B01G504200 chr3D 91.495 388 31 2 220 605 43797986 43797599 1.230000e-147 532.0
26 TraesCS5B01G504200 chr3D 91.192 386 33 1 220 604 570039142 570039527 7.400000e-145 523.0
27 TraesCS5B01G504200 chr3D 81.006 179 30 3 2014 2188 356454730 356454908 3.130000e-29 139.0
28 TraesCS5B01G504200 chr4D 94.805 77 3 1 2241 2316 196895633 196895557 4.080000e-23 119.0
29 TraesCS5B01G504200 chr3B 93.750 80 4 1 2241 2319 626200059 626199980 4.080000e-23 119.0
30 TraesCS5B01G504200 chr7D 92.500 80 5 1 2241 2319 18211391 18211312 1.900000e-21 113.0
31 TraesCS5B01G504200 chr6D 92.500 80 5 1 2241 2319 102881867 102881788 1.900000e-21 113.0
32 TraesCS5B01G504200 chr6D 93.056 72 4 1 2246 2316 243026468 243026539 1.140000e-18 104.0
33 TraesCS5B01G504200 chr2D 92.500 80 5 1 2241 2319 486341232 486341153 1.900000e-21 113.0
34 TraesCS5B01G504200 chr2D 74.436 266 46 14 1712 1969 307831949 307831698 6.870000e-16 95.3
35 TraesCS5B01G504200 chr2A 92.208 77 5 1 2241 2316 12077262 12077338 8.830000e-20 108.0
36 TraesCS5B01G504200 chr6B 90.789 76 6 1 2242 2316 662242051 662242126 1.480000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G504200 chr5B 670304090 670306425 2335 False 4314.000000 4314 100.000000 1 2336 1 chr5B.!!$F3 2335
1 TraesCS5B01G504200 chr5B 670246006 670246958 952 True 1022.000000 1022 86.748000 626 1558 1 chr5B.!!$R1 932
2 TraesCS5B01G504200 chr5B 670136475 670139254 2779 True 824.250000 2390 95.394000 1 2021 4 chr5B.!!$R2 2020
3 TraesCS5B01G504200 chr5B 670238567 670240017 1450 True 314.500000 514 87.994500 1581 2098 2 chr5B.!!$R3 517
4 TraesCS5B01G504200 chr5D 531202476 531206173 3697 True 563.900000 1051 89.001500 621 1558 2 chr5D.!!$R2 937
5 TraesCS5B01G504200 chr5D 531253540 531254843 1303 True 358.033333 795 91.060667 679 1625 3 chr5D.!!$R3 946
6 TraesCS5B01G504200 chr4A 641358511 641360178 1667 False 499.000000 763 86.839000 621 1558 2 chr4A.!!$F2 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 225 0.036483 TTGCATTGAGAGTGCGGCTA 60.036 50.0 0.0 0.0 45.37 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 8492 0.036952 AGTCCTCACGACATGCCAAG 60.037 55.0 0.0 0.0 44.66 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.421056 ACGGTGATAAGTCTAGGACATGAAA 59.579 40.000 0.00 0.00 34.60 2.69
146 147 0.533032 ACCGAGAGTTGAAGCTAGCC 59.467 55.000 12.13 0.00 0.00 3.93
180 181 0.975556 TGAGGAGTTAGCGGCCATGA 60.976 55.000 2.24 0.00 0.00 3.07
206 208 6.258727 AGGCTATCGAACACATGTAAGATTTG 59.741 38.462 0.00 0.00 0.00 2.32
207 209 5.904080 GCTATCGAACACATGTAAGATTTGC 59.096 40.000 0.00 6.12 0.00 3.68
208 210 5.878332 ATCGAACACATGTAAGATTTGCA 57.122 34.783 0.00 0.00 0.00 4.08
209 211 5.878332 TCGAACACATGTAAGATTTGCAT 57.122 34.783 0.00 0.00 36.36 3.96
210 212 6.252967 TCGAACACATGTAAGATTTGCATT 57.747 33.333 0.00 0.00 33.54 3.56
211 213 6.085573 TCGAACACATGTAAGATTTGCATTG 58.914 36.000 0.00 0.00 33.54 2.82
212 214 6.072783 TCGAACACATGTAAGATTTGCATTGA 60.073 34.615 0.00 0.00 33.54 2.57
213 215 6.249893 CGAACACATGTAAGATTTGCATTGAG 59.750 38.462 0.00 0.00 33.54 3.02
214 216 6.822667 ACACATGTAAGATTTGCATTGAGA 57.177 33.333 0.00 0.00 33.54 3.27
215 217 6.849502 ACACATGTAAGATTTGCATTGAGAG 58.150 36.000 0.00 0.00 33.54 3.20
216 218 6.432162 ACACATGTAAGATTTGCATTGAGAGT 59.568 34.615 0.00 0.00 33.54 3.24
217 219 6.745907 CACATGTAAGATTTGCATTGAGAGTG 59.254 38.462 0.00 0.00 33.54 3.51
218 220 5.300969 TGTAAGATTTGCATTGAGAGTGC 57.699 39.130 0.00 0.00 42.81 4.40
219 221 3.482722 AAGATTTGCATTGAGAGTGCG 57.517 42.857 0.00 0.00 45.37 5.34
220 222 1.741706 AGATTTGCATTGAGAGTGCGG 59.258 47.619 0.00 0.00 45.37 5.69
221 223 0.171903 ATTTGCATTGAGAGTGCGGC 59.828 50.000 0.00 0.00 45.37 6.53
222 224 0.890542 TTTGCATTGAGAGTGCGGCT 60.891 50.000 0.00 0.00 45.37 5.52
223 225 0.036483 TTGCATTGAGAGTGCGGCTA 60.036 50.000 0.00 0.00 45.37 3.93
224 226 0.036483 TGCATTGAGAGTGCGGCTAA 60.036 50.000 0.00 0.00 45.37 3.09
225 227 0.375106 GCATTGAGAGTGCGGCTAAC 59.625 55.000 0.00 0.00 32.29 2.34
226 228 1.009829 CATTGAGAGTGCGGCTAACC 58.990 55.000 0.00 0.00 0.00 2.85
227 229 0.905357 ATTGAGAGTGCGGCTAACCT 59.095 50.000 0.00 0.00 0.00 3.50
228 230 0.037326 TTGAGAGTGCGGCTAACCTG 60.037 55.000 0.00 0.00 0.00 4.00
229 231 1.811679 GAGAGTGCGGCTAACCTGC 60.812 63.158 0.00 0.00 36.43 4.85
230 232 2.047274 GAGTGCGGCTAACCTGCA 60.047 61.111 0.00 0.00 41.20 4.41
233 235 4.715523 TGCGGCTAACCTGCACCC 62.716 66.667 0.00 0.00 39.47 4.61
236 238 4.796495 GGCTAACCTGCACCCGGG 62.796 72.222 22.25 22.25 43.59 5.73
238 240 3.717294 CTAACCTGCACCCGGGCT 61.717 66.667 24.08 4.79 41.53 5.19
239 241 3.682292 CTAACCTGCACCCGGGCTC 62.682 68.421 24.08 13.62 41.53 4.70
314 316 8.887036 TTTGTGTGATAGATAATTAGATGCGT 57.113 30.769 0.00 0.00 0.00 5.24
315 317 7.873739 TGTGTGATAGATAATTAGATGCGTG 57.126 36.000 0.00 0.00 0.00 5.34
316 318 7.657336 TGTGTGATAGATAATTAGATGCGTGA 58.343 34.615 0.00 0.00 0.00 4.35
317 319 7.809806 TGTGTGATAGATAATTAGATGCGTGAG 59.190 37.037 0.00 0.00 0.00 3.51
318 320 7.274468 GTGTGATAGATAATTAGATGCGTGAGG 59.726 40.741 0.00 0.00 0.00 3.86
319 321 7.039714 TGTGATAGATAATTAGATGCGTGAGGT 60.040 37.037 0.00 0.00 0.00 3.85
320 322 7.815068 GTGATAGATAATTAGATGCGTGAGGTT 59.185 37.037 0.00 0.00 0.00 3.50
321 323 8.029522 TGATAGATAATTAGATGCGTGAGGTTC 58.970 37.037 0.00 0.00 0.00 3.62
322 324 5.223382 AGATAATTAGATGCGTGAGGTTCG 58.777 41.667 0.00 0.00 0.00 3.95
329 331 3.329231 CGTGAGGTTCGCTGCAAA 58.671 55.556 0.00 0.00 0.00 3.68
330 332 1.205064 CGTGAGGTTCGCTGCAAAG 59.795 57.895 0.00 0.00 0.00 2.77
331 333 1.221466 CGTGAGGTTCGCTGCAAAGA 61.221 55.000 0.00 0.00 0.00 2.52
332 334 1.160137 GTGAGGTTCGCTGCAAAGAT 58.840 50.000 0.00 0.00 0.00 2.40
333 335 1.129437 GTGAGGTTCGCTGCAAAGATC 59.871 52.381 0.00 0.00 0.00 2.75
334 336 1.270785 TGAGGTTCGCTGCAAAGATCA 60.271 47.619 0.00 0.00 0.00 2.92
335 337 1.806542 GAGGTTCGCTGCAAAGATCAA 59.193 47.619 0.00 0.00 0.00 2.57
336 338 1.537202 AGGTTCGCTGCAAAGATCAAC 59.463 47.619 0.00 0.00 0.00 3.18
337 339 1.537202 GGTTCGCTGCAAAGATCAACT 59.463 47.619 0.00 0.00 0.00 3.16
338 340 2.413371 GGTTCGCTGCAAAGATCAACTC 60.413 50.000 0.00 0.00 0.00 3.01
339 341 1.070821 TCGCTGCAAAGATCAACTCG 58.929 50.000 0.00 0.00 0.00 4.18
340 342 0.792640 CGCTGCAAAGATCAACTCGT 59.207 50.000 0.00 0.00 0.00 4.18
341 343 1.195448 CGCTGCAAAGATCAACTCGTT 59.805 47.619 0.00 0.00 0.00 3.85
342 344 2.349817 CGCTGCAAAGATCAACTCGTTT 60.350 45.455 0.00 0.00 0.00 3.60
343 345 2.975851 GCTGCAAAGATCAACTCGTTTG 59.024 45.455 0.00 0.00 36.42 2.93
344 346 3.558505 CTGCAAAGATCAACTCGTTTGG 58.441 45.455 0.00 0.00 35.69 3.28
345 347 3.210227 TGCAAAGATCAACTCGTTTGGA 58.790 40.909 0.00 0.00 35.69 3.53
346 348 3.003275 TGCAAAGATCAACTCGTTTGGAC 59.997 43.478 0.00 0.00 35.69 4.02
347 349 3.003275 GCAAAGATCAACTCGTTTGGACA 59.997 43.478 0.00 0.00 35.69 4.02
348 350 4.320494 GCAAAGATCAACTCGTTTGGACAT 60.320 41.667 0.00 0.00 35.69 3.06
349 351 5.762045 CAAAGATCAACTCGTTTGGACATT 58.238 37.500 0.00 0.00 35.69 2.71
350 352 6.208644 CAAAGATCAACTCGTTTGGACATTT 58.791 36.000 0.00 0.00 35.69 2.32
351 353 5.362556 AGATCAACTCGTTTGGACATTTG 57.637 39.130 0.00 0.00 35.69 2.32
352 354 5.063204 AGATCAACTCGTTTGGACATTTGA 58.937 37.500 0.00 0.00 35.69 2.69
353 355 4.811555 TCAACTCGTTTGGACATTTGAG 57.188 40.909 0.69 0.00 35.69 3.02
354 356 3.003275 TCAACTCGTTTGGACATTTGAGC 59.997 43.478 0.69 0.00 35.69 4.26
355 357 2.571212 ACTCGTTTGGACATTTGAGCA 58.429 42.857 0.00 0.00 0.00 4.26
356 358 2.948979 ACTCGTTTGGACATTTGAGCAA 59.051 40.909 0.00 0.00 0.00 3.91
357 359 3.003689 ACTCGTTTGGACATTTGAGCAAG 59.996 43.478 0.00 0.00 0.00 4.01
358 360 2.948979 TCGTTTGGACATTTGAGCAAGT 59.051 40.909 0.00 0.00 0.00 3.16
359 361 3.003275 TCGTTTGGACATTTGAGCAAGTC 59.997 43.478 0.00 0.00 0.00 3.01
360 362 3.003689 CGTTTGGACATTTGAGCAAGTCT 59.996 43.478 0.00 0.00 0.00 3.24
361 363 4.293415 GTTTGGACATTTGAGCAAGTCTG 58.707 43.478 0.00 0.00 0.00 3.51
362 364 3.213206 TGGACATTTGAGCAAGTCTGT 57.787 42.857 0.00 0.00 0.00 3.41
363 365 2.880268 TGGACATTTGAGCAAGTCTGTG 59.120 45.455 0.00 0.00 0.00 3.66
364 366 2.351157 GGACATTTGAGCAAGTCTGTGC 60.351 50.000 0.00 0.00 45.28 4.57
386 388 2.447408 AAAAGACAAAACCGGGGTCT 57.553 45.000 6.32 10.44 43.35 3.85
387 389 1.977056 AAAGACAAAACCGGGGTCTC 58.023 50.000 17.04 1.47 40.80 3.36
388 390 1.137697 AAGACAAAACCGGGGTCTCT 58.862 50.000 17.04 3.56 40.80 3.10
389 391 2.019807 AGACAAAACCGGGGTCTCTA 57.980 50.000 6.32 0.00 37.31 2.43
390 392 2.332117 AGACAAAACCGGGGTCTCTAA 58.668 47.619 6.32 0.00 37.31 2.10
391 393 2.707257 AGACAAAACCGGGGTCTCTAAA 59.293 45.455 6.32 0.00 37.31 1.85
392 394 3.136992 AGACAAAACCGGGGTCTCTAAAA 59.863 43.478 6.32 0.00 37.31 1.52
393 395 3.884693 GACAAAACCGGGGTCTCTAAAAA 59.115 43.478 6.32 0.00 0.00 1.94
416 418 9.705290 AAAAAGTTTACTGTTCATGAACTGTTT 57.295 25.926 38.98 28.92 46.58 2.83
417 419 9.705290 AAAAGTTTACTGTTCATGAACTGTTTT 57.295 25.926 38.98 31.42 46.58 2.43
418 420 8.687824 AAGTTTACTGTTCATGAACTGTTTTG 57.312 30.769 38.98 23.52 46.58 2.44
419 421 8.050778 AGTTTACTGTTCATGAACTGTTTTGA 57.949 30.769 38.98 26.09 46.58 2.69
420 422 7.968405 AGTTTACTGTTCATGAACTGTTTTGAC 59.032 33.333 38.98 30.93 46.58 3.18
421 423 5.248870 ACTGTTCATGAACTGTTTTGACC 57.751 39.130 33.14 10.82 46.58 4.02
422 424 4.097892 ACTGTTCATGAACTGTTTTGACCC 59.902 41.667 33.14 10.38 46.58 4.46
423 425 3.066064 TGTTCATGAACTGTTTTGACCCG 59.934 43.478 32.57 0.00 41.67 5.28
424 426 3.201353 TCATGAACTGTTTTGACCCGA 57.799 42.857 0.00 0.00 0.00 5.14
425 427 3.750371 TCATGAACTGTTTTGACCCGAT 58.250 40.909 0.00 0.00 0.00 4.18
426 428 4.141287 TCATGAACTGTTTTGACCCGATT 58.859 39.130 0.00 0.00 0.00 3.34
427 429 4.582656 TCATGAACTGTTTTGACCCGATTT 59.417 37.500 0.00 0.00 0.00 2.17
428 430 4.300189 TGAACTGTTTTGACCCGATTTG 57.700 40.909 0.00 0.00 0.00 2.32
429 431 3.697045 TGAACTGTTTTGACCCGATTTGT 59.303 39.130 0.00 0.00 0.00 2.83
430 432 3.982576 ACTGTTTTGACCCGATTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
431 433 2.289547 ACTGTTTTGACCCGATTTGTCG 59.710 45.455 0.00 0.00 35.46 4.35
432 434 2.289547 CTGTTTTGACCCGATTTGTCGT 59.710 45.455 0.00 0.00 35.46 4.34
433 435 2.683867 TGTTTTGACCCGATTTGTCGTT 59.316 40.909 0.00 0.00 35.46 3.85
434 436 3.128938 TGTTTTGACCCGATTTGTCGTTT 59.871 39.130 0.00 0.00 35.46 3.60
435 437 4.106909 GTTTTGACCCGATTTGTCGTTTT 58.893 39.130 0.00 0.00 35.46 2.43
436 438 4.373348 TTTGACCCGATTTGTCGTTTTT 57.627 36.364 0.00 0.00 35.46 1.94
437 439 3.341857 TGACCCGATTTGTCGTTTTTG 57.658 42.857 0.00 0.00 35.46 2.44
438 440 2.048498 GACCCGATTTGTCGTTTTTGC 58.952 47.619 0.00 0.00 0.00 3.68
439 441 1.269361 ACCCGATTTGTCGTTTTTGCC 60.269 47.619 0.00 0.00 0.00 4.52
440 442 1.049251 CCGATTTGTCGTTTTTGCCG 58.951 50.000 0.00 0.00 0.00 5.69
441 443 1.334239 CCGATTTGTCGTTTTTGCCGA 60.334 47.619 0.00 0.00 0.00 5.54
442 444 1.969256 CGATTTGTCGTTTTTGCCGAG 59.031 47.619 0.00 0.00 34.56 4.63
443 445 2.349060 CGATTTGTCGTTTTTGCCGAGA 60.349 45.455 0.00 0.00 34.56 4.04
444 446 2.461897 TTTGTCGTTTTTGCCGAGAC 57.538 45.000 0.00 0.00 34.56 3.36
445 447 1.658994 TTGTCGTTTTTGCCGAGACT 58.341 45.000 0.00 0.00 34.56 3.24
446 448 1.658994 TGTCGTTTTTGCCGAGACTT 58.341 45.000 0.00 0.00 34.56 3.01
447 449 1.329292 TGTCGTTTTTGCCGAGACTTG 59.671 47.619 0.00 0.00 34.56 3.16
448 450 0.306533 TCGTTTTTGCCGAGACTTGC 59.693 50.000 0.00 0.00 0.00 4.01
449 451 0.307760 CGTTTTTGCCGAGACTTGCT 59.692 50.000 0.00 0.00 0.00 3.91
450 452 1.660333 CGTTTTTGCCGAGACTTGCTC 60.660 52.381 0.00 0.00 40.38 4.26
451 453 1.333619 GTTTTTGCCGAGACTTGCTCA 59.666 47.619 0.00 0.00 44.15 4.26
452 454 1.674359 TTTTGCCGAGACTTGCTCAA 58.326 45.000 0.00 0.00 44.15 3.02
453 455 1.674359 TTTGCCGAGACTTGCTCAAA 58.326 45.000 0.00 4.97 44.15 2.69
454 456 1.896220 TTGCCGAGACTTGCTCAAAT 58.104 45.000 0.00 0.00 44.15 2.32
455 457 1.159285 TGCCGAGACTTGCTCAAATG 58.841 50.000 0.00 0.00 44.15 2.32
456 458 1.160137 GCCGAGACTTGCTCAAATGT 58.840 50.000 0.00 0.00 44.15 2.71
457 459 1.129437 GCCGAGACTTGCTCAAATGTC 59.871 52.381 0.00 0.00 44.15 3.06
458 460 1.734465 CCGAGACTTGCTCAAATGTCC 59.266 52.381 0.00 0.00 44.15 4.02
459 461 2.416747 CGAGACTTGCTCAAATGTCCA 58.583 47.619 0.00 0.00 44.15 4.02
460 462 2.807967 CGAGACTTGCTCAAATGTCCAA 59.192 45.455 0.00 0.00 44.15 3.53
461 463 3.250762 CGAGACTTGCTCAAATGTCCAAA 59.749 43.478 0.00 0.00 44.15 3.28
462 464 4.083110 CGAGACTTGCTCAAATGTCCAAAT 60.083 41.667 0.00 0.00 44.15 2.32
463 465 5.130292 AGACTTGCTCAAATGTCCAAATG 57.870 39.130 0.00 0.00 0.00 2.32
464 466 4.828939 AGACTTGCTCAAATGTCCAAATGA 59.171 37.500 0.00 0.00 0.00 2.57
465 467 5.048224 AGACTTGCTCAAATGTCCAAATGAG 60.048 40.000 7.82 7.82 41.69 2.90
466 468 4.586001 ACTTGCTCAAATGTCCAAATGAGT 59.414 37.500 11.79 0.00 41.03 3.41
467 469 5.069516 ACTTGCTCAAATGTCCAAATGAGTT 59.930 36.000 11.79 0.00 41.03 3.01
468 470 4.873817 TGCTCAAATGTCCAAATGAGTTG 58.126 39.130 11.79 0.00 41.03 3.16
469 471 4.583907 TGCTCAAATGTCCAAATGAGTTGA 59.416 37.500 0.00 0.00 41.03 3.18
470 472 5.244402 TGCTCAAATGTCCAAATGAGTTGAT 59.756 36.000 0.00 0.00 41.03 2.57
471 473 6.161381 GCTCAAATGTCCAAATGAGTTGATT 58.839 36.000 0.00 0.00 41.03 2.57
472 474 6.647895 GCTCAAATGTCCAAATGAGTTGATTT 59.352 34.615 0.00 0.00 41.03 2.17
473 475 7.172019 GCTCAAATGTCCAAATGAGTTGATTTT 59.828 33.333 0.00 0.00 41.03 1.82
474 476 8.961294 TCAAATGTCCAAATGAGTTGATTTTT 57.039 26.923 0.00 0.00 39.87 1.94
475 477 8.828644 TCAAATGTCCAAATGAGTTGATTTTTG 58.171 29.630 0.00 0.06 39.87 2.44
476 478 6.790285 ATGTCCAAATGAGTTGATTTTTGC 57.210 33.333 0.00 0.00 39.87 3.68
477 479 5.668471 TGTCCAAATGAGTTGATTTTTGCA 58.332 33.333 0.00 0.00 39.87 4.08
478 480 5.754406 TGTCCAAATGAGTTGATTTTTGCAG 59.246 36.000 0.00 0.00 39.87 4.41
479 481 4.751098 TCCAAATGAGTTGATTTTTGCAGC 59.249 37.500 0.00 0.00 39.87 5.25
480 482 4.512198 CCAAATGAGTTGATTTTTGCAGCA 59.488 37.500 0.00 0.00 39.87 4.41
481 483 5.333798 CCAAATGAGTTGATTTTTGCAGCAG 60.334 40.000 0.00 0.00 39.87 4.24
482 484 3.374220 TGAGTTGATTTTTGCAGCAGG 57.626 42.857 0.00 0.00 0.00 4.85
483 485 2.064014 GAGTTGATTTTTGCAGCAGGC 58.936 47.619 0.00 0.00 45.13 4.85
484 486 1.150827 GTTGATTTTTGCAGCAGGCC 58.849 50.000 0.00 0.00 43.89 5.19
485 487 1.050204 TTGATTTTTGCAGCAGGCCT 58.950 45.000 0.00 0.00 43.89 5.19
486 488 0.604578 TGATTTTTGCAGCAGGCCTC 59.395 50.000 0.00 0.00 43.89 4.70
487 489 0.604578 GATTTTTGCAGCAGGCCTCA 59.395 50.000 0.00 0.00 43.89 3.86
488 490 1.206371 GATTTTTGCAGCAGGCCTCAT 59.794 47.619 0.00 0.00 43.89 2.90
489 491 0.319083 TTTTTGCAGCAGGCCTCATG 59.681 50.000 0.00 5.69 43.89 3.07
490 492 2.162338 TTTTGCAGCAGGCCTCATGC 62.162 55.000 25.47 25.47 43.89 4.06
495 497 2.501128 GCAGGCCTCATGCGTCTA 59.499 61.111 0.00 0.00 42.61 2.59
496 498 1.153369 GCAGGCCTCATGCGTCTAA 60.153 57.895 0.00 0.00 42.61 2.10
497 499 0.533755 GCAGGCCTCATGCGTCTAAT 60.534 55.000 0.00 0.00 42.61 1.73
498 500 1.959042 CAGGCCTCATGCGTCTAATT 58.041 50.000 0.00 0.00 42.61 1.40
499 501 2.806745 GCAGGCCTCATGCGTCTAATTA 60.807 50.000 0.00 0.00 42.61 1.40
500 502 3.668447 CAGGCCTCATGCGTCTAATTAT 58.332 45.455 0.00 0.00 42.61 1.28
501 503 3.681897 CAGGCCTCATGCGTCTAATTATC 59.318 47.826 0.00 0.00 42.61 1.75
502 504 3.580458 AGGCCTCATGCGTCTAATTATCT 59.420 43.478 0.00 0.00 42.61 1.98
503 505 4.772624 AGGCCTCATGCGTCTAATTATCTA 59.227 41.667 0.00 0.00 42.61 1.98
504 506 4.865365 GGCCTCATGCGTCTAATTATCTAC 59.135 45.833 0.00 0.00 42.61 2.59
505 507 4.865365 GCCTCATGCGTCTAATTATCTACC 59.135 45.833 0.00 0.00 0.00 3.18
506 508 5.566826 GCCTCATGCGTCTAATTATCTACCA 60.567 44.000 0.00 0.00 0.00 3.25
507 509 5.864474 CCTCATGCGTCTAATTATCTACCAC 59.136 44.000 0.00 0.00 0.00 4.16
508 510 6.399639 TCATGCGTCTAATTATCTACCACA 57.600 37.500 0.00 0.00 0.00 4.17
509 511 6.213677 TCATGCGTCTAATTATCTACCACAC 58.786 40.000 0.00 0.00 0.00 3.82
510 512 5.585820 TGCGTCTAATTATCTACCACACA 57.414 39.130 0.00 0.00 0.00 3.72
511 513 5.968254 TGCGTCTAATTATCTACCACACAA 58.032 37.500 0.00 0.00 0.00 3.33
512 514 6.399743 TGCGTCTAATTATCTACCACACAAA 58.600 36.000 0.00 0.00 0.00 2.83
513 515 6.874664 TGCGTCTAATTATCTACCACACAAAA 59.125 34.615 0.00 0.00 0.00 2.44
514 516 7.388224 TGCGTCTAATTATCTACCACACAAAAA 59.612 33.333 0.00 0.00 0.00 1.94
574 576 2.276732 TTTTTCCTGACAGGGAGCAG 57.723 50.000 21.56 0.00 35.59 4.24
575 577 0.250901 TTTTCCTGACAGGGAGCAGC 60.251 55.000 21.56 0.00 35.59 5.25
576 578 1.130054 TTTCCTGACAGGGAGCAGCT 61.130 55.000 21.56 0.00 35.59 4.24
577 579 1.834856 TTCCTGACAGGGAGCAGCTG 61.835 60.000 21.56 10.11 35.59 4.24
578 580 2.288778 CCTGACAGGGAGCAGCTGA 61.289 63.158 20.43 0.00 0.00 4.26
579 581 1.218585 CTGACAGGGAGCAGCTGAG 59.781 63.158 20.43 0.00 0.00 3.35
580 582 2.125188 GACAGGGAGCAGCTGAGC 60.125 66.667 20.43 7.89 0.00 4.26
581 583 3.678951 GACAGGGAGCAGCTGAGCC 62.679 68.421 20.43 17.11 34.23 4.70
582 584 4.486503 CAGGGAGCAGCTGAGCCC 62.487 72.222 27.90 27.90 41.00 5.19
597 599 3.089874 CCCGGGCTCCTGGATGAA 61.090 66.667 8.08 0.00 45.10 2.57
598 600 2.455565 CCCGGGCTCCTGGATGAAT 61.456 63.158 8.08 0.00 45.10 2.57
599 601 1.533711 CCGGGCTCCTGGATGAATT 59.466 57.895 8.09 0.00 45.10 2.17
600 602 0.764890 CCGGGCTCCTGGATGAATTA 59.235 55.000 8.09 0.00 45.10 1.40
601 603 1.352352 CCGGGCTCCTGGATGAATTAT 59.648 52.381 8.09 0.00 45.10 1.28
602 604 2.616510 CCGGGCTCCTGGATGAATTATC 60.617 54.545 8.09 0.00 45.10 1.75
603 605 2.704572 GGGCTCCTGGATGAATTATCG 58.295 52.381 0.00 0.00 36.62 2.92
604 606 2.039084 GGGCTCCTGGATGAATTATCGT 59.961 50.000 0.00 0.00 36.62 3.73
605 607 3.496870 GGGCTCCTGGATGAATTATCGTT 60.497 47.826 0.00 0.00 36.62 3.85
728 3456 4.927267 TCATTTCAGTTAGGTGGATGGT 57.073 40.909 0.00 0.00 0.00 3.55
765 3493 1.531423 GAGGACTGGACGTGTCTACA 58.469 55.000 0.00 0.00 35.04 2.74
1587 7037 2.165641 AGTGCAGTGCAATGAATCATGG 59.834 45.455 21.67 0.00 41.47 3.66
1646 7096 7.545362 ACTAGATGCACTAAACATCATGAAC 57.455 36.000 0.00 0.00 45.19 3.18
1684 7134 6.897259 TGTAACGACAACCATAATTAGAGC 57.103 37.500 0.00 0.00 30.68 4.09
1757 7207 0.806868 ATGCTGTGAAGGCGATGTTG 59.193 50.000 0.00 0.00 0.00 3.33
1760 7210 1.804151 GCTGTGAAGGCGATGTTGTTA 59.196 47.619 0.00 0.00 0.00 2.41
1761 7211 2.225491 GCTGTGAAGGCGATGTTGTTAA 59.775 45.455 0.00 0.00 0.00 2.01
1762 7212 3.810373 CTGTGAAGGCGATGTTGTTAAC 58.190 45.455 0.00 0.00 0.00 2.01
1763 7213 3.206964 TGTGAAGGCGATGTTGTTAACA 58.793 40.909 3.59 3.59 46.94 2.41
1862 7341 1.202222 CCCATGATGAAGAACGCAAGC 60.202 52.381 0.00 0.00 45.62 4.01
1868 7347 1.154580 GAAGAACGCAAGCAGTCGC 60.155 57.895 0.00 0.00 45.62 5.19
1891 7370 2.100197 GAAGCCCATCCCAAAACCTAC 58.900 52.381 0.00 0.00 0.00 3.18
1892 7371 1.382914 AGCCCATCCCAAAACCTACT 58.617 50.000 0.00 0.00 0.00 2.57
1917 7396 1.071385 CCTCTCCCCATTCAAGGATCG 59.929 57.143 0.00 0.00 0.00 3.69
1918 7397 0.469917 TCTCCCCATTCAAGGATCGC 59.530 55.000 0.00 0.00 0.00 4.58
1935 7414 3.394674 TCGCAAGGTCAAGATGTTACA 57.605 42.857 0.00 0.00 38.47 2.41
1955 7434 0.455295 GAGACCTGCTCTCACGTTCG 60.455 60.000 0.00 0.00 44.62 3.95
2016 8399 5.859205 ACCAAAAGAAAGTCATGCTCTTT 57.141 34.783 12.97 12.97 40.31 2.52
2026 8409 4.583871 AGTCATGCTCTTTGTAAAGGGAG 58.416 43.478 8.37 0.00 38.84 4.30
2042 8425 0.957888 GGAGCTGGCAGGTTTCTGTC 60.958 60.000 21.55 6.46 45.35 3.51
2098 8481 8.378565 TGGAGTTCTTCAATTTTCTGATAGACT 58.621 33.333 0.00 0.00 0.00 3.24
2099 8482 9.225436 GGAGTTCTTCAATTTTCTGATAGACTT 57.775 33.333 0.00 0.00 0.00 3.01
2110 8493 9.981460 ATTTTCTGATAGACTTAAAACATCCCT 57.019 29.630 0.00 0.00 0.00 4.20
2111 8494 9.807921 TTTTCTGATAGACTTAAAACATCCCTT 57.192 29.630 0.00 0.00 0.00 3.95
2112 8495 8.792830 TTCTGATAGACTTAAAACATCCCTTG 57.207 34.615 0.00 0.00 0.00 3.61
2113 8496 7.338710 TCTGATAGACTTAAAACATCCCTTGG 58.661 38.462 0.00 0.00 0.00 3.61
2114 8497 5.885912 TGATAGACTTAAAACATCCCTTGGC 59.114 40.000 0.00 0.00 0.00 4.52
2115 8498 4.112634 AGACTTAAAACATCCCTTGGCA 57.887 40.909 0.00 0.00 0.00 4.92
2116 8499 4.677182 AGACTTAAAACATCCCTTGGCAT 58.323 39.130 0.00 0.00 0.00 4.40
2117 8500 4.463891 AGACTTAAAACATCCCTTGGCATG 59.536 41.667 0.00 0.00 0.00 4.06
2118 8501 4.159557 ACTTAAAACATCCCTTGGCATGT 58.840 39.130 0.00 0.00 34.58 3.21
2119 8502 4.220602 ACTTAAAACATCCCTTGGCATGTC 59.779 41.667 0.00 0.00 31.79 3.06
2120 8503 1.176527 AAACATCCCTTGGCATGTCG 58.823 50.000 0.00 0.00 31.79 4.35
2121 8504 0.038166 AACATCCCTTGGCATGTCGT 59.962 50.000 0.00 0.00 31.79 4.34
2122 8505 0.677731 ACATCCCTTGGCATGTCGTG 60.678 55.000 0.00 0.00 0.00 4.35
2123 8506 0.392863 CATCCCTTGGCATGTCGTGA 60.393 55.000 0.00 0.00 0.00 4.35
2124 8507 0.107508 ATCCCTTGGCATGTCGTGAG 60.108 55.000 0.00 0.00 0.00 3.51
2125 8508 1.746615 CCCTTGGCATGTCGTGAGG 60.747 63.158 7.10 7.10 0.00 3.86
2126 8509 1.296392 CCTTGGCATGTCGTGAGGA 59.704 57.895 8.11 0.00 0.00 3.71
2127 8510 1.021390 CCTTGGCATGTCGTGAGGAC 61.021 60.000 8.11 0.00 46.27 3.85
2128 8511 0.036952 CTTGGCATGTCGTGAGGACT 60.037 55.000 6.84 0.00 46.24 3.85
2129 8512 0.396435 TTGGCATGTCGTGAGGACTT 59.604 50.000 6.84 0.00 46.24 3.01
2130 8513 0.037326 TGGCATGTCGTGAGGACTTC 60.037 55.000 6.84 0.00 46.24 3.01
2131 8514 0.037326 GGCATGTCGTGAGGACTTCA 60.037 55.000 6.84 0.00 46.24 3.02
2147 8530 9.753674 TGAGGACTTCACATTATCCTTAAAATT 57.246 29.630 0.00 0.00 41.79 1.82
2190 8573 9.638239 TTTGATTGTCACAATTTATAAGAAGGC 57.362 29.630 4.04 0.00 0.00 4.35
2191 8574 8.347004 TGATTGTCACAATTTATAAGAAGGCA 57.653 30.769 4.04 0.00 0.00 4.75
2192 8575 8.243426 TGATTGTCACAATTTATAAGAAGGCAC 58.757 33.333 4.04 0.00 0.00 5.01
2193 8576 6.509418 TGTCACAATTTATAAGAAGGCACC 57.491 37.500 0.00 0.00 0.00 5.01
2194 8577 5.123186 TGTCACAATTTATAAGAAGGCACCG 59.877 40.000 0.00 0.00 0.00 4.94
2195 8578 5.123344 GTCACAATTTATAAGAAGGCACCGT 59.877 40.000 0.00 0.00 0.00 4.83
2196 8579 5.708230 TCACAATTTATAAGAAGGCACCGTT 59.292 36.000 0.00 0.00 0.00 4.44
2197 8580 6.027749 CACAATTTATAAGAAGGCACCGTTC 58.972 40.000 0.00 0.00 0.00 3.95
2198 8581 5.708230 ACAATTTATAAGAAGGCACCGTTCA 59.292 36.000 0.00 0.00 0.00 3.18
2199 8582 6.377146 ACAATTTATAAGAAGGCACCGTTCAT 59.623 34.615 0.00 0.00 0.00 2.57
2200 8583 6.619801 ATTTATAAGAAGGCACCGTTCATC 57.380 37.500 0.00 0.00 0.00 2.92
2201 8584 3.914426 ATAAGAAGGCACCGTTCATCT 57.086 42.857 0.00 0.00 0.00 2.90
2202 8585 2.568623 AAGAAGGCACCGTTCATCTT 57.431 45.000 0.00 0.00 0.00 2.40
2203 8586 2.568623 AGAAGGCACCGTTCATCTTT 57.431 45.000 0.00 0.00 0.00 2.52
2204 8587 2.863809 AGAAGGCACCGTTCATCTTTT 58.136 42.857 0.00 0.00 0.00 2.27
2205 8588 2.554032 AGAAGGCACCGTTCATCTTTTG 59.446 45.455 0.00 0.00 0.00 2.44
2206 8589 1.981256 AGGCACCGTTCATCTTTTGT 58.019 45.000 0.00 0.00 0.00 2.83
2207 8590 2.306847 AGGCACCGTTCATCTTTTGTT 58.693 42.857 0.00 0.00 0.00 2.83
2208 8591 3.482436 AGGCACCGTTCATCTTTTGTTA 58.518 40.909 0.00 0.00 0.00 2.41
2209 8592 4.079253 AGGCACCGTTCATCTTTTGTTAT 58.921 39.130 0.00 0.00 0.00 1.89
2210 8593 5.250200 AGGCACCGTTCATCTTTTGTTATA 58.750 37.500 0.00 0.00 0.00 0.98
2211 8594 5.708230 AGGCACCGTTCATCTTTTGTTATAA 59.292 36.000 0.00 0.00 0.00 0.98
2212 8595 6.207810 AGGCACCGTTCATCTTTTGTTATAAA 59.792 34.615 0.00 0.00 0.00 1.40
2213 8596 7.033185 GGCACCGTTCATCTTTTGTTATAAAT 58.967 34.615 0.00 0.00 0.00 1.40
2214 8597 7.544217 GGCACCGTTCATCTTTTGTTATAAATT 59.456 33.333 0.00 0.00 0.00 1.82
2215 8598 8.921670 GCACCGTTCATCTTTTGTTATAAATTT 58.078 29.630 0.00 0.00 0.00 1.82
2243 8626 7.661536 AGTAGTCTATAAAGCCTCATCAACA 57.338 36.000 0.00 0.00 0.00 3.33
2244 8627 8.256356 AGTAGTCTATAAAGCCTCATCAACAT 57.744 34.615 0.00 0.00 0.00 2.71
2245 8628 9.368416 AGTAGTCTATAAAGCCTCATCAACATA 57.632 33.333 0.00 0.00 0.00 2.29
2246 8629 9.632807 GTAGTCTATAAAGCCTCATCAACATAG 57.367 37.037 0.00 0.00 0.00 2.23
2247 8630 7.158021 AGTCTATAAAGCCTCATCAACATAGC 58.842 38.462 0.00 0.00 0.00 2.97
2248 8631 6.931281 GTCTATAAAGCCTCATCAACATAGCA 59.069 38.462 0.00 0.00 0.00 3.49
2249 8632 7.442364 GTCTATAAAGCCTCATCAACATAGCAA 59.558 37.037 0.00 0.00 0.00 3.91
2250 8633 4.978083 AAAGCCTCATCAACATAGCAAG 57.022 40.909 0.00 0.00 0.00 4.01
2251 8634 3.920231 AGCCTCATCAACATAGCAAGA 57.080 42.857 0.00 0.00 0.00 3.02
2252 8635 4.434545 AGCCTCATCAACATAGCAAGAT 57.565 40.909 0.00 0.00 0.00 2.40
2253 8636 4.387598 AGCCTCATCAACATAGCAAGATC 58.612 43.478 0.00 0.00 0.00 2.75
2254 8637 4.102838 AGCCTCATCAACATAGCAAGATCT 59.897 41.667 0.00 0.00 0.00 2.75
2255 8638 4.820716 GCCTCATCAACATAGCAAGATCTT 59.179 41.667 0.88 0.88 0.00 2.40
2256 8639 5.277876 GCCTCATCAACATAGCAAGATCTTG 60.278 44.000 27.82 27.82 43.14 3.02
2257 8640 5.821470 CCTCATCAACATAGCAAGATCTTGT 59.179 40.000 30.88 21.29 42.31 3.16
2258 8641 6.318144 CCTCATCAACATAGCAAGATCTTGTT 59.682 38.462 30.88 28.15 42.31 2.83
2259 8642 7.080353 TCATCAACATAGCAAGATCTTGTTG 57.920 36.000 30.88 26.49 45.25 3.33
2271 8654 6.560711 CAAGATCTTGTTGCATCATCAATCA 58.439 36.000 24.65 0.00 35.92 2.57
2272 8655 6.769134 AGATCTTGTTGCATCATCAATCAA 57.231 33.333 0.00 0.00 0.00 2.57
2273 8656 7.348080 AGATCTTGTTGCATCATCAATCAAT 57.652 32.000 0.00 0.00 0.00 2.57
2274 8657 7.203218 AGATCTTGTTGCATCATCAATCAATG 58.797 34.615 0.00 0.00 0.00 2.82
2275 8658 6.275494 TCTTGTTGCATCATCAATCAATGT 57.725 33.333 0.00 0.00 0.00 2.71
2276 8659 6.327154 TCTTGTTGCATCATCAATCAATGTC 58.673 36.000 0.00 0.00 0.00 3.06
2277 8660 5.646577 TGTTGCATCATCAATCAATGTCA 57.353 34.783 0.00 0.00 0.00 3.58
2278 8661 6.215495 TGTTGCATCATCAATCAATGTCAT 57.785 33.333 0.00 0.00 0.00 3.06
2279 8662 6.039616 TGTTGCATCATCAATCAATGTCATG 58.960 36.000 0.00 0.00 0.00 3.07
2280 8663 6.127591 TGTTGCATCATCAATCAATGTCATGA 60.128 34.615 0.00 0.00 0.00 3.07
2281 8664 6.458232 TGCATCATCAATCAATGTCATGAA 57.542 33.333 0.00 0.00 32.06 2.57
2282 8665 6.868622 TGCATCATCAATCAATGTCATGAAA 58.131 32.000 0.00 0.00 32.06 2.69
2283 8666 7.496747 TGCATCATCAATCAATGTCATGAAAT 58.503 30.769 0.00 0.00 32.06 2.17
2284 8667 8.634444 TGCATCATCAATCAATGTCATGAAATA 58.366 29.630 0.00 0.00 32.06 1.40
2285 8668 9.639601 GCATCATCAATCAATGTCATGAAATAT 57.360 29.630 0.00 0.00 32.06 1.28
2294 8677 9.636789 ATCAATGTCATGAAATATCTCTTTCCA 57.363 29.630 0.00 0.00 34.83 3.53
2295 8678 9.636789 TCAATGTCATGAAATATCTCTTTCCAT 57.363 29.630 0.00 0.00 34.83 3.41
2296 8679 9.894783 CAATGTCATGAAATATCTCTTTCCATC 57.105 33.333 0.00 0.00 34.83 3.51
2297 8680 9.863650 AATGTCATGAAATATCTCTTTCCATCT 57.136 29.630 0.00 0.00 34.83 2.90
2298 8681 9.863650 ATGTCATGAAATATCTCTTTCCATCTT 57.136 29.630 0.00 0.00 34.83 2.40
2299 8682 9.690913 TGTCATGAAATATCTCTTTCCATCTTT 57.309 29.630 0.00 0.00 34.83 2.52
2304 8687 9.519191 TGAAATATCTCTTTCCATCTTTTGTCA 57.481 29.630 0.00 0.00 34.83 3.58
2307 8690 8.868522 ATATCTCTTTCCATCTTTTGTCAACA 57.131 30.769 0.00 0.00 0.00 3.33
2308 8691 6.377327 TCTCTTTCCATCTTTTGTCAACAC 57.623 37.500 0.00 0.00 0.00 3.32
2309 8692 5.299279 TCTCTTTCCATCTTTTGTCAACACC 59.701 40.000 0.00 0.00 0.00 4.16
2310 8693 4.340950 TCTTTCCATCTTTTGTCAACACCC 59.659 41.667 0.00 0.00 0.00 4.61
2311 8694 3.304911 TCCATCTTTTGTCAACACCCA 57.695 42.857 0.00 0.00 0.00 4.51
2312 8695 3.843422 TCCATCTTTTGTCAACACCCAT 58.157 40.909 0.00 0.00 0.00 4.00
2313 8696 4.222336 TCCATCTTTTGTCAACACCCATT 58.778 39.130 0.00 0.00 0.00 3.16
2314 8697 4.280677 TCCATCTTTTGTCAACACCCATTC 59.719 41.667 0.00 0.00 0.00 2.67
2315 8698 4.039004 CCATCTTTTGTCAACACCCATTCA 59.961 41.667 0.00 0.00 0.00 2.57
2316 8699 5.453057 CCATCTTTTGTCAACACCCATTCAA 60.453 40.000 0.00 0.00 0.00 2.69
2317 8700 5.004922 TCTTTTGTCAACACCCATTCAAC 57.995 39.130 0.00 0.00 0.00 3.18
2318 8701 4.709397 TCTTTTGTCAACACCCATTCAACT 59.291 37.500 0.00 0.00 0.00 3.16
2319 8702 5.186797 TCTTTTGTCAACACCCATTCAACTT 59.813 36.000 0.00 0.00 0.00 2.66
2320 8703 5.413309 TTTGTCAACACCCATTCAACTTT 57.587 34.783 0.00 0.00 0.00 2.66
2321 8704 4.383850 TGTCAACACCCATTCAACTTTG 57.616 40.909 0.00 0.00 0.00 2.77
2322 8705 4.019858 TGTCAACACCCATTCAACTTTGA 58.980 39.130 0.00 0.00 34.92 2.69
2334 8717 4.301072 TCAACTTTGAATAGGGGGACTG 57.699 45.455 0.00 0.00 33.55 3.51
2335 8718 3.010138 TCAACTTTGAATAGGGGGACTGG 59.990 47.826 0.00 0.00 33.55 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.076863 AGACTTATCACCGTTGCTTGC 58.923 47.619 0.00 0.00 0.00 4.01
83 84 2.832129 TGATCTTCGTGAACTAAGCCCT 59.168 45.455 0.00 0.00 0.00 5.19
146 147 0.745845 CCTCAACTCGCCCTTCCATG 60.746 60.000 0.00 0.00 0.00 3.66
156 157 0.802607 GCCGCTAACTCCTCAACTCG 60.803 60.000 0.00 0.00 0.00 4.18
180 181 5.339008 TCTTACATGTGTTCGATAGCCTT 57.661 39.130 9.11 0.00 0.00 4.35
206 208 0.375106 GTTAGCCGCACTCTCAATGC 59.625 55.000 0.00 0.00 39.81 3.56
207 209 1.009829 GGTTAGCCGCACTCTCAATG 58.990 55.000 0.00 0.00 0.00 2.82
208 210 0.905357 AGGTTAGCCGCACTCTCAAT 59.095 50.000 0.00 0.00 40.50 2.57
209 211 0.037326 CAGGTTAGCCGCACTCTCAA 60.037 55.000 0.00 0.00 40.50 3.02
210 212 1.591703 CAGGTTAGCCGCACTCTCA 59.408 57.895 0.00 0.00 40.50 3.27
211 213 1.811679 GCAGGTTAGCCGCACTCTC 60.812 63.158 7.38 0.00 40.50 3.20
212 214 2.266055 GCAGGTTAGCCGCACTCT 59.734 61.111 7.38 0.00 40.50 3.24
213 215 2.047274 TGCAGGTTAGCCGCACTC 60.047 61.111 10.17 0.00 38.60 3.51
216 218 4.715523 GGGTGCAGGTTAGCCGCA 62.716 66.667 10.17 10.17 40.20 5.69
219 221 4.796495 CCCGGGTGCAGGTTAGCC 62.796 72.222 14.18 0.00 0.00 3.93
221 223 3.682292 GAGCCCGGGTGCAGGTTAG 62.682 68.421 24.63 0.00 0.00 2.34
222 224 3.712907 GAGCCCGGGTGCAGGTTA 61.713 66.667 24.63 0.00 0.00 2.85
288 290 9.325198 ACGCATCTAATTATCTATCACACAAAA 57.675 29.630 0.00 0.00 0.00 2.44
289 291 8.764287 CACGCATCTAATTATCTATCACACAAA 58.236 33.333 0.00 0.00 0.00 2.83
290 292 8.141268 TCACGCATCTAATTATCTATCACACAA 58.859 33.333 0.00 0.00 0.00 3.33
291 293 7.657336 TCACGCATCTAATTATCTATCACACA 58.343 34.615 0.00 0.00 0.00 3.72
292 294 7.274468 CCTCACGCATCTAATTATCTATCACAC 59.726 40.741 0.00 0.00 0.00 3.82
293 295 7.039714 ACCTCACGCATCTAATTATCTATCACA 60.040 37.037 0.00 0.00 0.00 3.58
294 296 7.316640 ACCTCACGCATCTAATTATCTATCAC 58.683 38.462 0.00 0.00 0.00 3.06
295 297 7.468141 ACCTCACGCATCTAATTATCTATCA 57.532 36.000 0.00 0.00 0.00 2.15
296 298 7.219154 CGAACCTCACGCATCTAATTATCTATC 59.781 40.741 0.00 0.00 0.00 2.08
297 299 7.030165 CGAACCTCACGCATCTAATTATCTAT 58.970 38.462 0.00 0.00 0.00 1.98
298 300 6.379386 CGAACCTCACGCATCTAATTATCTA 58.621 40.000 0.00 0.00 0.00 1.98
299 301 5.223382 CGAACCTCACGCATCTAATTATCT 58.777 41.667 0.00 0.00 0.00 1.98
300 302 5.502214 CGAACCTCACGCATCTAATTATC 57.498 43.478 0.00 0.00 0.00 1.75
312 314 1.205064 CTTTGCAGCGAACCTCACG 59.795 57.895 0.00 0.00 0.00 4.35
313 315 1.129437 GATCTTTGCAGCGAACCTCAC 59.871 52.381 0.00 0.00 0.00 3.51
314 316 1.270785 TGATCTTTGCAGCGAACCTCA 60.271 47.619 0.00 0.00 0.00 3.86
315 317 1.442769 TGATCTTTGCAGCGAACCTC 58.557 50.000 0.00 0.00 0.00 3.85
316 318 1.537202 GTTGATCTTTGCAGCGAACCT 59.463 47.619 0.00 0.00 0.00 3.50
317 319 1.537202 AGTTGATCTTTGCAGCGAACC 59.463 47.619 0.00 0.00 0.00 3.62
318 320 2.723010 CGAGTTGATCTTTGCAGCGAAC 60.723 50.000 0.00 0.00 0.00 3.95
319 321 1.460743 CGAGTTGATCTTTGCAGCGAA 59.539 47.619 0.00 0.00 0.00 4.70
320 322 1.070821 CGAGTTGATCTTTGCAGCGA 58.929 50.000 0.00 0.00 0.00 4.93
321 323 0.792640 ACGAGTTGATCTTTGCAGCG 59.207 50.000 0.00 0.00 0.00 5.18
322 324 2.975851 CAAACGAGTTGATCTTTGCAGC 59.024 45.455 0.00 0.00 39.87 5.25
323 325 3.250762 TCCAAACGAGTTGATCTTTGCAG 59.749 43.478 5.36 0.00 39.87 4.41
324 326 3.003275 GTCCAAACGAGTTGATCTTTGCA 59.997 43.478 5.36 0.00 39.87 4.08
325 327 3.003275 TGTCCAAACGAGTTGATCTTTGC 59.997 43.478 5.36 0.00 39.87 3.68
326 328 4.811555 TGTCCAAACGAGTTGATCTTTG 57.188 40.909 5.36 0.00 39.87 2.77
327 329 6.039270 TCAAATGTCCAAACGAGTTGATCTTT 59.961 34.615 5.36 0.00 39.87 2.52
328 330 5.530915 TCAAATGTCCAAACGAGTTGATCTT 59.469 36.000 5.36 0.00 39.87 2.40
329 331 5.063204 TCAAATGTCCAAACGAGTTGATCT 58.937 37.500 5.36 0.00 39.87 2.75
330 332 5.356882 TCAAATGTCCAAACGAGTTGATC 57.643 39.130 5.36 0.00 39.87 2.92
331 333 4.320494 GCTCAAATGTCCAAACGAGTTGAT 60.320 41.667 5.36 0.00 39.87 2.57
332 334 3.003275 GCTCAAATGTCCAAACGAGTTGA 59.997 43.478 5.36 0.00 39.87 3.18
333 335 3.243035 TGCTCAAATGTCCAAACGAGTTG 60.243 43.478 0.00 0.00 36.94 3.16
334 336 2.948979 TGCTCAAATGTCCAAACGAGTT 59.051 40.909 0.00 0.00 0.00 3.01
335 337 2.571212 TGCTCAAATGTCCAAACGAGT 58.429 42.857 0.00 0.00 0.00 4.18
336 338 3.003689 ACTTGCTCAAATGTCCAAACGAG 59.996 43.478 0.00 0.00 0.00 4.18
337 339 2.948979 ACTTGCTCAAATGTCCAAACGA 59.051 40.909 0.00 0.00 0.00 3.85
338 340 3.003689 AGACTTGCTCAAATGTCCAAACG 59.996 43.478 0.00 0.00 0.00 3.60
339 341 4.202050 ACAGACTTGCTCAAATGTCCAAAC 60.202 41.667 0.00 0.00 0.00 2.93
340 342 3.953612 ACAGACTTGCTCAAATGTCCAAA 59.046 39.130 0.00 0.00 0.00 3.28
341 343 3.316029 CACAGACTTGCTCAAATGTCCAA 59.684 43.478 0.00 0.00 0.00 3.53
342 344 2.880268 CACAGACTTGCTCAAATGTCCA 59.120 45.455 0.00 0.00 0.00 4.02
343 345 2.351157 GCACAGACTTGCTCAAATGTCC 60.351 50.000 0.00 0.00 39.59 4.02
344 346 2.291465 TGCACAGACTTGCTCAAATGTC 59.709 45.455 9.86 0.00 43.41 3.06
345 347 2.300433 TGCACAGACTTGCTCAAATGT 58.700 42.857 9.86 0.00 43.41 2.71
346 348 3.358707 TTGCACAGACTTGCTCAAATG 57.641 42.857 9.86 0.00 43.41 2.32
347 349 4.389890 TTTTGCACAGACTTGCTCAAAT 57.610 36.364 9.86 0.00 43.41 2.32
348 350 3.865011 TTTTGCACAGACTTGCTCAAA 57.135 38.095 9.86 7.06 43.41 2.69
349 351 3.865011 TTTTTGCACAGACTTGCTCAA 57.135 38.095 9.86 2.78 43.41 3.02
366 368 2.691526 GAGACCCCGGTTTTGTCTTTTT 59.308 45.455 12.59 0.00 39.36 1.94
367 369 2.092049 AGAGACCCCGGTTTTGTCTTTT 60.092 45.455 12.59 4.59 39.36 2.27
368 370 1.493446 AGAGACCCCGGTTTTGTCTTT 59.507 47.619 12.59 6.34 39.36 2.52
369 371 1.137697 AGAGACCCCGGTTTTGTCTT 58.862 50.000 12.59 3.49 39.36 3.01
370 372 2.019807 TAGAGACCCCGGTTTTGTCT 57.980 50.000 11.55 11.55 41.83 3.41
371 373 2.845363 TTAGAGACCCCGGTTTTGTC 57.155 50.000 0.00 1.38 0.00 3.18
372 374 3.581265 TTTTAGAGACCCCGGTTTTGT 57.419 42.857 0.00 0.00 0.00 2.83
390 392 9.705290 AAACAGTTCATGAACAGTAAACTTTTT 57.295 25.926 33.92 20.33 43.47 1.94
391 393 9.705290 AAAACAGTTCATGAACAGTAAACTTTT 57.295 25.926 33.92 24.90 43.47 2.27
392 394 9.139174 CAAAACAGTTCATGAACAGTAAACTTT 57.861 29.630 33.92 25.19 43.47 2.66
393 395 8.519526 TCAAAACAGTTCATGAACAGTAAACTT 58.480 29.630 33.92 21.81 43.47 2.66
394 396 7.968405 GTCAAAACAGTTCATGAACAGTAAACT 59.032 33.333 33.92 17.91 43.47 2.66
395 397 7.220108 GGTCAAAACAGTTCATGAACAGTAAAC 59.780 37.037 33.92 25.01 43.47 2.01
396 398 7.254852 GGTCAAAACAGTTCATGAACAGTAAA 58.745 34.615 33.92 17.98 43.47 2.01
397 399 6.183360 GGGTCAAAACAGTTCATGAACAGTAA 60.183 38.462 33.92 18.26 43.47 2.24
398 400 5.298276 GGGTCAAAACAGTTCATGAACAGTA 59.702 40.000 33.92 17.91 43.47 2.74
399 401 4.097892 GGGTCAAAACAGTTCATGAACAGT 59.902 41.667 33.92 29.88 43.47 3.55
400 402 4.610945 GGGTCAAAACAGTTCATGAACAG 58.389 43.478 33.92 29.27 43.47 3.16
401 403 3.066064 CGGGTCAAAACAGTTCATGAACA 59.934 43.478 33.92 13.78 43.47 3.18
402 404 3.314080 TCGGGTCAAAACAGTTCATGAAC 59.686 43.478 27.69 27.69 41.45 3.18
403 405 3.546724 TCGGGTCAAAACAGTTCATGAA 58.453 40.909 3.38 3.38 0.00 2.57
404 406 3.201353 TCGGGTCAAAACAGTTCATGA 57.799 42.857 0.00 0.00 0.00 3.07
405 407 4.503741 AATCGGGTCAAAACAGTTCATG 57.496 40.909 0.00 0.00 0.00 3.07
406 408 4.340950 ACAAATCGGGTCAAAACAGTTCAT 59.659 37.500 0.00 0.00 0.00 2.57
407 409 3.697045 ACAAATCGGGTCAAAACAGTTCA 59.303 39.130 0.00 0.00 0.00 3.18
408 410 4.287720 GACAAATCGGGTCAAAACAGTTC 58.712 43.478 0.00 0.00 35.36 3.01
409 411 3.242936 CGACAAATCGGGTCAAAACAGTT 60.243 43.478 0.00 0.00 44.99 3.16
410 412 2.289547 CGACAAATCGGGTCAAAACAGT 59.710 45.455 0.00 0.00 44.99 3.55
411 413 2.916111 CGACAAATCGGGTCAAAACAG 58.084 47.619 0.00 0.00 44.99 3.16
423 425 2.971261 GTCTCGGCAAAAACGACAAATC 59.029 45.455 0.00 0.00 36.25 2.17
424 426 2.616842 AGTCTCGGCAAAAACGACAAAT 59.383 40.909 0.00 0.00 36.25 2.32
425 427 2.011222 AGTCTCGGCAAAAACGACAAA 58.989 42.857 0.00 0.00 36.25 2.83
426 428 1.658994 AGTCTCGGCAAAAACGACAA 58.341 45.000 0.00 0.00 36.25 3.18
427 429 1.329292 CAAGTCTCGGCAAAAACGACA 59.671 47.619 0.00 0.00 36.25 4.35
428 430 1.920272 GCAAGTCTCGGCAAAAACGAC 60.920 52.381 0.00 0.00 36.25 4.34
429 431 0.306533 GCAAGTCTCGGCAAAAACGA 59.693 50.000 0.00 0.00 38.79 3.85
430 432 0.307760 AGCAAGTCTCGGCAAAAACG 59.692 50.000 0.00 0.00 0.00 3.60
431 433 1.333619 TGAGCAAGTCTCGGCAAAAAC 59.666 47.619 0.00 0.00 44.86 2.43
432 434 1.674359 TGAGCAAGTCTCGGCAAAAA 58.326 45.000 0.00 0.00 44.86 1.94
433 435 1.674359 TTGAGCAAGTCTCGGCAAAA 58.326 45.000 0.00 0.00 44.86 2.44
434 436 1.674359 TTTGAGCAAGTCTCGGCAAA 58.326 45.000 0.00 0.00 44.86 3.68
435 437 1.536766 CATTTGAGCAAGTCTCGGCAA 59.463 47.619 0.00 0.00 44.86 4.52
436 438 1.159285 CATTTGAGCAAGTCTCGGCA 58.841 50.000 0.00 0.00 44.86 5.69
437 439 1.129437 GACATTTGAGCAAGTCTCGGC 59.871 52.381 0.00 0.00 44.86 5.54
438 440 1.734465 GGACATTTGAGCAAGTCTCGG 59.266 52.381 0.00 0.00 44.86 4.63
439 441 2.416747 TGGACATTTGAGCAAGTCTCG 58.583 47.619 0.00 0.00 44.86 4.04
440 442 4.836125 TTTGGACATTTGAGCAAGTCTC 57.164 40.909 0.00 0.00 42.23 3.36
441 443 4.828939 TCATTTGGACATTTGAGCAAGTCT 59.171 37.500 0.00 0.00 0.00 3.24
442 444 5.125100 TCATTTGGACATTTGAGCAAGTC 57.875 39.130 0.00 0.00 0.00 3.01
443 445 4.586001 ACTCATTTGGACATTTGAGCAAGT 59.414 37.500 10.25 0.00 39.33 3.16
444 446 5.130292 ACTCATTTGGACATTTGAGCAAG 57.870 39.130 10.25 0.00 39.33 4.01
445 447 5.068855 TCAACTCATTTGGACATTTGAGCAA 59.931 36.000 10.25 0.00 39.33 3.91
446 448 4.583907 TCAACTCATTTGGACATTTGAGCA 59.416 37.500 10.25 0.00 39.33 4.26
447 449 5.125100 TCAACTCATTTGGACATTTGAGC 57.875 39.130 10.25 0.00 39.33 4.26
448 450 8.597662 AAAATCAACTCATTTGGACATTTGAG 57.402 30.769 9.26 9.26 41.06 3.02
449 451 8.828644 CAAAAATCAACTCATTTGGACATTTGA 58.171 29.630 0.00 0.00 35.69 2.69
450 452 7.588488 GCAAAAATCAACTCATTTGGACATTTG 59.412 33.333 0.00 0.00 35.69 2.32
451 453 7.282675 TGCAAAAATCAACTCATTTGGACATTT 59.717 29.630 0.00 0.00 35.69 2.32
452 454 6.766944 TGCAAAAATCAACTCATTTGGACATT 59.233 30.769 0.00 0.00 35.69 2.71
453 455 6.289834 TGCAAAAATCAACTCATTTGGACAT 58.710 32.000 0.00 0.00 35.69 3.06
454 456 5.668471 TGCAAAAATCAACTCATTTGGACA 58.332 33.333 0.00 0.00 35.69 4.02
455 457 5.333568 GCTGCAAAAATCAACTCATTTGGAC 60.334 40.000 0.00 0.00 35.69 4.02
456 458 4.751098 GCTGCAAAAATCAACTCATTTGGA 59.249 37.500 0.00 0.00 35.69 3.53
457 459 4.512198 TGCTGCAAAAATCAACTCATTTGG 59.488 37.500 0.00 0.00 35.69 3.28
458 460 5.333798 CCTGCTGCAAAAATCAACTCATTTG 60.334 40.000 3.02 0.00 36.19 2.32
459 461 4.753107 CCTGCTGCAAAAATCAACTCATTT 59.247 37.500 3.02 0.00 0.00 2.32
460 462 4.312443 CCTGCTGCAAAAATCAACTCATT 58.688 39.130 3.02 0.00 0.00 2.57
461 463 3.863400 GCCTGCTGCAAAAATCAACTCAT 60.863 43.478 3.02 0.00 40.77 2.90
462 464 2.546373 GCCTGCTGCAAAAATCAACTCA 60.546 45.455 3.02 0.00 40.77 3.41
463 465 2.064014 GCCTGCTGCAAAAATCAACTC 58.936 47.619 3.02 0.00 40.77 3.01
464 466 1.270465 GGCCTGCTGCAAAAATCAACT 60.270 47.619 3.02 0.00 43.89 3.16
465 467 1.150827 GGCCTGCTGCAAAAATCAAC 58.849 50.000 3.02 0.00 43.89 3.18
466 468 1.001181 GAGGCCTGCTGCAAAAATCAA 59.999 47.619 12.00 0.00 43.89 2.57
467 469 0.604578 GAGGCCTGCTGCAAAAATCA 59.395 50.000 12.00 0.00 43.89 2.57
468 470 0.604578 TGAGGCCTGCTGCAAAAATC 59.395 50.000 12.00 0.83 43.89 2.17
469 471 1.066430 CATGAGGCCTGCTGCAAAAAT 60.066 47.619 12.00 0.00 43.89 1.82
470 472 0.319083 CATGAGGCCTGCTGCAAAAA 59.681 50.000 12.00 0.00 43.89 1.94
471 473 1.969085 CATGAGGCCTGCTGCAAAA 59.031 52.632 12.00 0.00 43.89 2.44
472 474 2.642254 GCATGAGGCCTGCTGCAAA 61.642 57.895 24.58 0.00 43.89 3.68
473 475 3.066190 GCATGAGGCCTGCTGCAA 61.066 61.111 24.58 0.14 43.89 4.08
476 478 2.302199 TAGACGCATGAGGCCTGCTG 62.302 60.000 12.00 8.63 40.31 4.41
477 479 1.617018 TTAGACGCATGAGGCCTGCT 61.617 55.000 12.00 0.00 40.31 4.24
478 480 0.533755 ATTAGACGCATGAGGCCTGC 60.534 55.000 12.00 7.94 40.31 4.85
479 481 1.959042 AATTAGACGCATGAGGCCTG 58.041 50.000 12.00 0.00 40.31 4.85
480 482 3.580458 AGATAATTAGACGCATGAGGCCT 59.420 43.478 3.86 3.86 40.31 5.19
481 483 3.931578 AGATAATTAGACGCATGAGGCC 58.068 45.455 0.00 0.00 40.31 5.19
482 484 4.865365 GGTAGATAATTAGACGCATGAGGC 59.135 45.833 0.00 0.00 39.90 4.70
483 485 5.864474 GTGGTAGATAATTAGACGCATGAGG 59.136 44.000 0.00 0.00 0.00 3.86
484 486 6.363626 GTGTGGTAGATAATTAGACGCATGAG 59.636 42.308 0.00 0.00 0.00 2.90
485 487 6.183360 TGTGTGGTAGATAATTAGACGCATGA 60.183 38.462 0.00 0.00 0.00 3.07
486 488 5.983118 TGTGTGGTAGATAATTAGACGCATG 59.017 40.000 0.00 0.00 0.00 4.06
487 489 6.156748 TGTGTGGTAGATAATTAGACGCAT 57.843 37.500 0.00 0.00 0.00 4.73
488 490 5.585820 TGTGTGGTAGATAATTAGACGCA 57.414 39.130 0.00 0.00 0.00 5.24
489 491 6.897259 TTTGTGTGGTAGATAATTAGACGC 57.103 37.500 0.00 0.00 0.00 5.19
555 557 1.819305 GCTGCTCCCTGTCAGGAAAAA 60.819 52.381 21.23 2.51 37.67 1.94
556 558 0.250901 GCTGCTCCCTGTCAGGAAAA 60.251 55.000 21.23 4.54 37.67 2.29
557 559 1.130054 AGCTGCTCCCTGTCAGGAAA 61.130 55.000 21.23 7.09 37.67 3.13
558 560 1.537397 AGCTGCTCCCTGTCAGGAA 60.537 57.895 21.23 0.00 37.67 3.36
559 561 2.121385 AGCTGCTCCCTGTCAGGA 59.879 61.111 21.23 5.70 37.67 3.86
560 562 2.241479 CTCAGCTGCTCCCTGTCAGG 62.241 65.000 12.40 12.40 34.30 3.86
561 563 1.218585 CTCAGCTGCTCCCTGTCAG 59.781 63.158 9.47 0.00 0.00 3.51
562 564 2.952293 GCTCAGCTGCTCCCTGTCA 61.952 63.158 9.47 0.00 0.00 3.58
563 565 2.125188 GCTCAGCTGCTCCCTGTC 60.125 66.667 9.47 0.00 0.00 3.51
564 566 3.715097 GGCTCAGCTGCTCCCTGT 61.715 66.667 9.47 0.00 0.00 4.00
565 567 4.486503 GGGCTCAGCTGCTCCCTG 62.487 72.222 26.46 8.45 35.87 4.45
580 582 1.999634 AATTCATCCAGGAGCCCGGG 62.000 60.000 19.09 19.09 40.26 5.73
581 583 0.764890 TAATTCATCCAGGAGCCCGG 59.235 55.000 0.00 0.00 0.00 5.73
582 584 2.704572 GATAATTCATCCAGGAGCCCG 58.295 52.381 0.00 0.00 0.00 6.13
583 585 2.039084 ACGATAATTCATCCAGGAGCCC 59.961 50.000 0.00 0.00 0.00 5.19
584 586 3.409026 ACGATAATTCATCCAGGAGCC 57.591 47.619 0.00 0.00 0.00 4.70
585 587 4.816385 TGAAACGATAATTCATCCAGGAGC 59.184 41.667 0.00 0.00 32.10 4.70
586 588 7.502120 AATGAAACGATAATTCATCCAGGAG 57.498 36.000 0.00 0.00 44.53 3.69
587 589 7.555914 TGAAATGAAACGATAATTCATCCAGGA 59.444 33.333 0.00 0.00 44.53 3.86
588 590 7.645340 GTGAAATGAAACGATAATTCATCCAGG 59.355 37.037 2.56 0.00 44.53 4.45
589 591 7.645340 GGTGAAATGAAACGATAATTCATCCAG 59.355 37.037 2.56 0.00 44.53 3.86
590 592 7.339212 AGGTGAAATGAAACGATAATTCATCCA 59.661 33.333 2.56 2.43 44.53 3.41
591 593 7.707104 AGGTGAAATGAAACGATAATTCATCC 58.293 34.615 2.56 0.76 44.53 3.51
592 594 9.573133 AAAGGTGAAATGAAACGATAATTCATC 57.427 29.630 2.56 0.00 44.53 2.92
593 595 9.573133 GAAAGGTGAAATGAAACGATAATTCAT 57.427 29.630 0.00 0.00 46.62 2.57
594 596 8.792633 AGAAAGGTGAAATGAAACGATAATTCA 58.207 29.630 0.00 0.00 40.76 2.57
595 597 9.626045 AAGAAAGGTGAAATGAAACGATAATTC 57.374 29.630 0.00 0.00 0.00 2.17
596 598 9.981114 AAAGAAAGGTGAAATGAAACGATAATT 57.019 25.926 0.00 0.00 0.00 1.40
598 600 9.887406 GTAAAGAAAGGTGAAATGAAACGATAA 57.113 29.630 0.00 0.00 0.00 1.75
599 601 9.058174 TGTAAAGAAAGGTGAAATGAAACGATA 57.942 29.630 0.00 0.00 0.00 2.92
600 602 7.936584 TGTAAAGAAAGGTGAAATGAAACGAT 58.063 30.769 0.00 0.00 0.00 3.73
601 603 7.323049 TGTAAAGAAAGGTGAAATGAAACGA 57.677 32.000 0.00 0.00 0.00 3.85
602 604 8.574196 AATGTAAAGAAAGGTGAAATGAAACG 57.426 30.769 0.00 0.00 0.00 3.60
689 3416 7.623630 TGAAATGATCTGTCTATCAAAGGACA 58.376 34.615 0.00 0.00 39.25 4.02
765 3493 3.618780 CTTTGAGAGCCAGCGCCCT 62.619 63.158 2.29 0.00 34.57 5.19
1646 7096 4.491942 GTCGTTACATGTGCGATGATTTTG 59.508 41.667 23.31 0.00 37.00 2.44
1684 7134 4.309933 TGTGCGCTATGATCTAATCAAGG 58.690 43.478 9.73 0.00 43.50 3.61
1763 7213 1.498865 CGGTCTTCAGCAACAACGCT 61.499 55.000 0.00 0.00 45.21 5.07
1840 7319 1.737838 TGCGTTCTTCATCATGGGTC 58.262 50.000 0.00 0.00 0.00 4.46
1845 7324 2.417933 GACTGCTTGCGTTCTTCATCAT 59.582 45.455 0.00 0.00 0.00 2.45
1847 7326 1.201855 CGACTGCTTGCGTTCTTCATC 60.202 52.381 0.00 0.00 0.00 2.92
1848 7327 0.792640 CGACTGCTTGCGTTCTTCAT 59.207 50.000 0.00 0.00 0.00 2.57
1868 7347 2.339556 TTTTGGGATGGGCTTCGCG 61.340 57.895 0.00 0.00 0.00 5.87
1876 7355 3.067684 ACGAAGTAGGTTTTGGGATGG 57.932 47.619 0.00 0.00 41.94 3.51
1891 7370 1.195115 TGAATGGGGAGAGGACGAAG 58.805 55.000 0.00 0.00 0.00 3.79
1892 7371 1.555075 CTTGAATGGGGAGAGGACGAA 59.445 52.381 0.00 0.00 0.00 3.85
1917 7396 4.390297 GTCTCTGTAACATCTTGACCTTGC 59.610 45.833 0.00 0.00 0.00 4.01
1918 7397 4.932200 GGTCTCTGTAACATCTTGACCTTG 59.068 45.833 0.00 0.00 39.30 3.61
2001 7480 5.473504 TCCCTTTACAAAGAGCATGACTTTC 59.526 40.000 12.97 0.00 38.28 2.62
2016 8399 1.133809 ACCTGCCAGCTCCCTTTACA 61.134 55.000 0.00 0.00 0.00 2.41
2026 8409 0.536006 ACAGACAGAAACCTGCCAGC 60.536 55.000 0.00 0.00 35.09 4.85
2084 8467 9.981460 AGGGATGTTTTAAGTCTATCAGAAAAT 57.019 29.630 0.00 0.00 0.00 1.82
2085 8468 9.807921 AAGGGATGTTTTAAGTCTATCAGAAAA 57.192 29.630 0.00 0.00 0.00 2.29
2091 8474 5.885912 TGCCAAGGGATGTTTTAAGTCTATC 59.114 40.000 0.00 0.00 0.00 2.08
2105 8488 0.107508 CTCACGACATGCCAAGGGAT 60.108 55.000 0.00 0.00 0.00 3.85
2106 8489 1.296392 CTCACGACATGCCAAGGGA 59.704 57.895 0.00 0.00 0.00 4.20
2107 8490 1.746615 CCTCACGACATGCCAAGGG 60.747 63.158 0.00 0.00 0.00 3.95
2108 8491 1.021390 GTCCTCACGACATGCCAAGG 61.021 60.000 0.00 0.00 41.54 3.61
2109 8492 0.036952 AGTCCTCACGACATGCCAAG 60.037 55.000 0.00 0.00 44.66 3.61
2110 8493 0.396435 AAGTCCTCACGACATGCCAA 59.604 50.000 0.00 0.00 44.66 4.52
2111 8494 0.037326 GAAGTCCTCACGACATGCCA 60.037 55.000 0.00 0.00 44.66 4.92
2112 8495 0.037326 TGAAGTCCTCACGACATGCC 60.037 55.000 0.00 0.00 44.66 4.40
2113 8496 1.071605 GTGAAGTCCTCACGACATGC 58.928 55.000 0.00 0.00 44.95 4.06
2121 8504 9.753674 AATTTTAAGGATAATGTGAAGTCCTCA 57.246 29.630 0.00 0.00 40.10 3.86
2164 8547 9.638239 GCCTTCTTATAAATTGTGACAATCAAA 57.362 29.630 11.70 0.68 0.00 2.69
2165 8548 8.801299 TGCCTTCTTATAAATTGTGACAATCAA 58.199 29.630 11.70 3.23 0.00 2.57
2166 8549 8.243426 GTGCCTTCTTATAAATTGTGACAATCA 58.757 33.333 11.70 3.23 0.00 2.57
2167 8550 7.702348 GGTGCCTTCTTATAAATTGTGACAATC 59.298 37.037 11.70 0.00 0.00 2.67
2168 8551 7.547227 GGTGCCTTCTTATAAATTGTGACAAT 58.453 34.615 4.72 4.72 0.00 2.71
2169 8552 6.348950 CGGTGCCTTCTTATAAATTGTGACAA 60.349 38.462 0.00 0.00 0.00 3.18
2170 8553 5.123186 CGGTGCCTTCTTATAAATTGTGACA 59.877 40.000 0.00 0.00 0.00 3.58
2171 8554 5.123344 ACGGTGCCTTCTTATAAATTGTGAC 59.877 40.000 0.00 0.00 0.00 3.67
2172 8555 5.250200 ACGGTGCCTTCTTATAAATTGTGA 58.750 37.500 0.00 0.00 0.00 3.58
2173 8556 5.560966 ACGGTGCCTTCTTATAAATTGTG 57.439 39.130 0.00 0.00 0.00 3.33
2174 8557 5.708230 TGAACGGTGCCTTCTTATAAATTGT 59.292 36.000 0.00 0.00 0.00 2.71
2175 8558 6.189677 TGAACGGTGCCTTCTTATAAATTG 57.810 37.500 0.00 0.00 0.00 2.32
2176 8559 6.828785 AGATGAACGGTGCCTTCTTATAAATT 59.171 34.615 0.00 0.00 0.00 1.82
2177 8560 6.357367 AGATGAACGGTGCCTTCTTATAAAT 58.643 36.000 0.00 0.00 0.00 1.40
2178 8561 5.741011 AGATGAACGGTGCCTTCTTATAAA 58.259 37.500 0.00 0.00 0.00 1.40
2179 8562 5.353394 AGATGAACGGTGCCTTCTTATAA 57.647 39.130 0.00 0.00 0.00 0.98
2180 8563 5.353394 AAGATGAACGGTGCCTTCTTATA 57.647 39.130 8.93 0.00 0.00 0.98
2181 8564 3.914426 AGATGAACGGTGCCTTCTTAT 57.086 42.857 0.00 0.00 0.00 1.73
2182 8565 3.695830 AAGATGAACGGTGCCTTCTTA 57.304 42.857 8.93 0.00 0.00 2.10
2183 8566 2.568623 AAGATGAACGGTGCCTTCTT 57.431 45.000 0.00 6.28 0.00 2.52
2184 8567 2.554032 CAAAAGATGAACGGTGCCTTCT 59.446 45.455 0.00 0.00 0.00 2.85
2185 8568 2.293399 ACAAAAGATGAACGGTGCCTTC 59.707 45.455 0.00 0.00 0.00 3.46
2186 8569 2.306847 ACAAAAGATGAACGGTGCCTT 58.693 42.857 0.00 0.00 0.00 4.35
2187 8570 1.981256 ACAAAAGATGAACGGTGCCT 58.019 45.000 0.00 0.00 0.00 4.75
2188 8571 2.793278 AACAAAAGATGAACGGTGCC 57.207 45.000 0.00 0.00 0.00 5.01
2189 8572 8.460831 AATTTATAACAAAAGATGAACGGTGC 57.539 30.769 0.00 0.00 0.00 5.01
2217 8600 9.197306 TGTTGATGAGGCTTTATAGACTACTAA 57.803 33.333 0.00 0.00 40.91 2.24
2218 8601 8.762481 TGTTGATGAGGCTTTATAGACTACTA 57.238 34.615 0.00 0.00 40.91 1.82
2219 8602 7.661536 TGTTGATGAGGCTTTATAGACTACT 57.338 36.000 0.00 0.00 40.91 2.57
2220 8603 9.632807 CTATGTTGATGAGGCTTTATAGACTAC 57.367 37.037 0.00 0.00 40.91 2.73
2221 8604 8.307483 GCTATGTTGATGAGGCTTTATAGACTA 58.693 37.037 0.00 0.00 40.91 2.59
2222 8605 7.158021 GCTATGTTGATGAGGCTTTATAGACT 58.842 38.462 0.00 0.00 44.64 3.24
2223 8606 6.931281 TGCTATGTTGATGAGGCTTTATAGAC 59.069 38.462 0.00 0.00 0.00 2.59
2224 8607 7.066307 TGCTATGTTGATGAGGCTTTATAGA 57.934 36.000 0.00 0.00 0.00 1.98
2225 8608 7.658982 TCTTGCTATGTTGATGAGGCTTTATAG 59.341 37.037 0.00 0.00 0.00 1.31
2226 8609 7.508687 TCTTGCTATGTTGATGAGGCTTTATA 58.491 34.615 0.00 0.00 0.00 0.98
2227 8610 6.359804 TCTTGCTATGTTGATGAGGCTTTAT 58.640 36.000 0.00 0.00 0.00 1.40
2228 8611 5.744171 TCTTGCTATGTTGATGAGGCTTTA 58.256 37.500 0.00 0.00 0.00 1.85
2229 8612 4.592942 TCTTGCTATGTTGATGAGGCTTT 58.407 39.130 0.00 0.00 0.00 3.51
2230 8613 4.226427 TCTTGCTATGTTGATGAGGCTT 57.774 40.909 0.00 0.00 0.00 4.35
2231 8614 3.920231 TCTTGCTATGTTGATGAGGCT 57.080 42.857 0.00 0.00 0.00 4.58
2232 8615 4.387598 AGATCTTGCTATGTTGATGAGGC 58.612 43.478 0.00 0.00 0.00 4.70
2233 8616 5.821470 ACAAGATCTTGCTATGTTGATGAGG 59.179 40.000 30.95 6.12 44.03 3.86
2234 8617 6.922247 ACAAGATCTTGCTATGTTGATGAG 57.078 37.500 30.95 6.73 44.03 2.90
2240 8623 5.416639 TGATGCAACAAGATCTTGCTATGTT 59.583 36.000 30.95 17.78 43.76 2.71
2241 8624 4.945543 TGATGCAACAAGATCTTGCTATGT 59.054 37.500 30.95 16.85 43.76 2.29
2242 8625 5.494632 TGATGCAACAAGATCTTGCTATG 57.505 39.130 30.95 26.13 43.76 2.23
2243 8626 5.826208 TGATGATGCAACAAGATCTTGCTAT 59.174 36.000 30.95 20.31 43.76 2.97
2244 8627 5.187687 TGATGATGCAACAAGATCTTGCTA 58.812 37.500 30.95 17.01 43.76 3.49
2245 8628 4.014406 TGATGATGCAACAAGATCTTGCT 58.986 39.130 30.95 19.44 43.76 3.91
2246 8629 4.365899 TGATGATGCAACAAGATCTTGC 57.634 40.909 30.95 20.83 44.03 4.01
2247 8630 6.560711 TGATTGATGATGCAACAAGATCTTG 58.439 36.000 29.74 29.74 45.58 3.02
2248 8631 6.769134 TGATTGATGATGCAACAAGATCTT 57.231 33.333 0.88 0.88 30.32 2.40
2249 8632 6.769134 TTGATTGATGATGCAACAAGATCT 57.231 33.333 0.00 0.00 30.32 2.75
2250 8633 6.978659 ACATTGATTGATGATGCAACAAGATC 59.021 34.615 0.00 5.81 30.32 2.75
2251 8634 6.873997 ACATTGATTGATGATGCAACAAGAT 58.126 32.000 0.00 0.00 30.32 2.40
2252 8635 6.071840 TGACATTGATTGATGATGCAACAAGA 60.072 34.615 0.00 0.00 30.32 3.02
2253 8636 6.096695 TGACATTGATTGATGATGCAACAAG 58.903 36.000 0.00 0.00 30.32 3.16
2254 8637 6.026947 TGACATTGATTGATGATGCAACAA 57.973 33.333 0.00 1.22 31.28 2.83
2255 8638 5.646577 TGACATTGATTGATGATGCAACA 57.353 34.783 0.00 0.00 0.00 3.33
2256 8639 6.270064 TCATGACATTGATTGATGATGCAAC 58.730 36.000 0.00 0.00 0.00 4.17
2257 8640 6.458232 TCATGACATTGATTGATGATGCAA 57.542 33.333 0.00 0.00 0.00 4.08
2258 8641 6.458232 TTCATGACATTGATTGATGATGCA 57.542 33.333 0.00 0.00 0.00 3.96
2259 8642 7.946655 ATTTCATGACATTGATTGATGATGC 57.053 32.000 0.00 0.00 0.00 3.91
2268 8651 9.636789 TGGAAAGAGATATTTCATGACATTGAT 57.363 29.630 0.00 0.00 40.29 2.57
2269 8652 9.636789 ATGGAAAGAGATATTTCATGACATTGA 57.363 29.630 0.00 0.00 40.29 2.57
2270 8653 9.894783 GATGGAAAGAGATATTTCATGACATTG 57.105 33.333 0.00 0.00 40.29 2.82
2271 8654 9.863650 AGATGGAAAGAGATATTTCATGACATT 57.136 29.630 0.00 0.00 40.29 2.71
2272 8655 9.863650 AAGATGGAAAGAGATATTTCATGACAT 57.136 29.630 0.00 0.00 40.29 3.06
2273 8656 9.690913 AAAGATGGAAAGAGATATTTCATGACA 57.309 29.630 0.00 0.00 40.29 3.58
2278 8661 9.519191 TGACAAAAGATGGAAAGAGATATTTCA 57.481 29.630 2.71 0.00 40.29 2.69
2281 8664 9.300681 TGTTGACAAAAGATGGAAAGAGATATT 57.699 29.630 0.00 0.00 0.00 1.28
2282 8665 8.734386 GTGTTGACAAAAGATGGAAAGAGATAT 58.266 33.333 0.00 0.00 0.00 1.63
2283 8666 7.174946 GGTGTTGACAAAAGATGGAAAGAGATA 59.825 37.037 0.00 0.00 0.00 1.98
2284 8667 6.015940 GGTGTTGACAAAAGATGGAAAGAGAT 60.016 38.462 0.00 0.00 0.00 2.75
2285 8668 5.299279 GGTGTTGACAAAAGATGGAAAGAGA 59.701 40.000 0.00 0.00 0.00 3.10
2286 8669 5.507985 GGGTGTTGACAAAAGATGGAAAGAG 60.508 44.000 0.00 0.00 0.00 2.85
2287 8670 4.340950 GGGTGTTGACAAAAGATGGAAAGA 59.659 41.667 0.00 0.00 0.00 2.52
2288 8671 4.099266 TGGGTGTTGACAAAAGATGGAAAG 59.901 41.667 0.00 0.00 0.00 2.62
2289 8672 4.026744 TGGGTGTTGACAAAAGATGGAAA 58.973 39.130 0.00 0.00 0.00 3.13
2290 8673 3.636679 TGGGTGTTGACAAAAGATGGAA 58.363 40.909 0.00 0.00 0.00 3.53
2291 8674 3.304911 TGGGTGTTGACAAAAGATGGA 57.695 42.857 0.00 0.00 0.00 3.41
2292 8675 4.039004 TGAATGGGTGTTGACAAAAGATGG 59.961 41.667 0.00 0.00 0.00 3.51
2293 8676 5.199024 TGAATGGGTGTTGACAAAAGATG 57.801 39.130 0.00 0.00 0.00 2.90
2294 8677 5.363580 AGTTGAATGGGTGTTGACAAAAGAT 59.636 36.000 0.00 0.00 0.00 2.40
2295 8678 4.709397 AGTTGAATGGGTGTTGACAAAAGA 59.291 37.500 0.00 0.00 0.00 2.52
2296 8679 5.009854 AGTTGAATGGGTGTTGACAAAAG 57.990 39.130 0.00 0.00 0.00 2.27
2297 8680 5.413309 AAGTTGAATGGGTGTTGACAAAA 57.587 34.783 0.00 0.00 0.00 2.44
2298 8681 5.047021 TCAAAGTTGAATGGGTGTTGACAAA 60.047 36.000 0.00 0.00 33.55 2.83
2299 8682 4.464244 TCAAAGTTGAATGGGTGTTGACAA 59.536 37.500 0.00 0.00 33.55 3.18
2300 8683 4.019858 TCAAAGTTGAATGGGTGTTGACA 58.980 39.130 0.00 0.00 33.55 3.58
2301 8684 4.647424 TCAAAGTTGAATGGGTGTTGAC 57.353 40.909 0.00 0.00 33.55 3.18
2313 8696 3.010138 CCAGTCCCCCTATTCAAAGTTGA 59.990 47.826 0.00 0.00 34.92 3.18
2314 8697 3.356290 CCAGTCCCCCTATTCAAAGTTG 58.644 50.000 0.00 0.00 0.00 3.16
2315 8698 3.739401 CCAGTCCCCCTATTCAAAGTT 57.261 47.619 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.