Multiple sequence alignment - TraesCS5B01G503900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G503900 | chr5B | 100.000 | 2812 | 0 | 0 | 1 | 2812 | 670119210 | 670116399 | 0.000000e+00 | 5193.0 |
1 | TraesCS5B01G503900 | chr5B | 85.938 | 384 | 42 | 5 | 363 | 736 | 680543298 | 680543679 | 1.570000e-107 | 399.0 |
2 | TraesCS5B01G503900 | chr4A | 88.661 | 1367 | 95 | 26 | 991 | 2324 | 641400889 | 641402228 | 0.000000e+00 | 1611.0 |
3 | TraesCS5B01G503900 | chr4A | 83.571 | 420 | 34 | 11 | 2397 | 2806 | 641402231 | 641402625 | 7.400000e-96 | 361.0 |
4 | TraesCS5B01G503900 | chr4A | 89.212 | 241 | 21 | 2 | 1 | 240 | 641398271 | 641398507 | 2.120000e-76 | 296.0 |
5 | TraesCS5B01G503900 | chr4A | 89.437 | 142 | 12 | 2 | 2493 | 2633 | 641398361 | 641398500 | 2.880000e-40 | 176.0 |
6 | TraesCS5B01G503900 | chr5D | 86.160 | 1250 | 83 | 30 | 267 | 1494 | 530874828 | 530873647 | 0.000000e+00 | 1267.0 |
7 | TraesCS5B01G503900 | chr5D | 86.092 | 870 | 80 | 23 | 1484 | 2324 | 530873629 | 530872772 | 0.000000e+00 | 898.0 |
8 | TraesCS5B01G503900 | chr5D | 93.436 | 259 | 14 | 1 | 1 | 259 | 530908287 | 530908032 | 5.680000e-102 | 381.0 |
9 | TraesCS5B01G503900 | chr5D | 76.991 | 226 | 46 | 6 | 363 | 584 | 416844342 | 416844565 | 1.060000e-24 | 124.0 |
10 | TraesCS5B01G503900 | chr2A | 88.991 | 327 | 18 | 10 | 994 | 1305 | 683014794 | 683014471 | 3.400000e-104 | 388.0 |
11 | TraesCS5B01G503900 | chr2A | 77.746 | 692 | 75 | 44 | 1420 | 2053 | 683014270 | 683013600 | 4.460000e-93 | 351.0 |
12 | TraesCS5B01G503900 | chr2A | 90.361 | 166 | 14 | 2 | 455 | 620 | 341917609 | 341917446 | 1.700000e-52 | 217.0 |
13 | TraesCS5B01G503900 | chr2A | 92.000 | 50 | 4 | 0 | 2348 | 2397 | 706752954 | 706753003 | 1.400000e-08 | 71.3 |
14 | TraesCS5B01G503900 | chr2D | 88.720 | 328 | 19 | 9 | 994 | 1306 | 539430242 | 539429918 | 4.390000e-103 | 385.0 |
15 | TraesCS5B01G503900 | chr2D | 77.858 | 691 | 76 | 37 | 1420 | 2053 | 539429713 | 539429043 | 9.580000e-95 | 357.0 |
16 | TraesCS5B01G503900 | chr2D | 81.853 | 259 | 37 | 8 | 431 | 686 | 79532390 | 79532641 | 2.840000e-50 | 209.0 |
17 | TraesCS5B01G503900 | chr2D | 92.000 | 50 | 4 | 0 | 2348 | 2397 | 566989051 | 566989100 | 1.400000e-08 | 71.3 |
18 | TraesCS5B01G503900 | chr2D | 88.462 | 52 | 5 | 1 | 2348 | 2399 | 533660229 | 533660179 | 8.410000e-06 | 62.1 |
19 | TraesCS5B01G503900 | chr2B | 87.387 | 333 | 18 | 11 | 994 | 1305 | 643685963 | 643685634 | 7.400000e-96 | 361.0 |
20 | TraesCS5B01G503900 | chr2B | 77.437 | 718 | 82 | 40 | 1391 | 2053 | 643685475 | 643684783 | 3.450000e-94 | 355.0 |
21 | TraesCS5B01G503900 | chr2B | 92.000 | 50 | 4 | 0 | 2348 | 2397 | 679898299 | 679898348 | 1.400000e-08 | 71.3 |
22 | TraesCS5B01G503900 | chr2B | 90.385 | 52 | 5 | 0 | 2348 | 2399 | 633269626 | 633269575 | 5.030000e-08 | 69.4 |
23 | TraesCS5B01G503900 | chr7D | 94.737 | 95 | 5 | 0 | 273 | 367 | 463109041 | 463109135 | 6.280000e-32 | 148.0 |
24 | TraesCS5B01G503900 | chr7D | 96.591 | 88 | 3 | 0 | 273 | 360 | 535726802 | 535726715 | 2.260000e-31 | 147.0 |
25 | TraesCS5B01G503900 | chr7D | 93.000 | 100 | 6 | 1 | 267 | 365 | 131620129 | 131620228 | 8.120000e-31 | 145.0 |
26 | TraesCS5B01G503900 | chr7D | 81.765 | 170 | 26 | 4 | 368 | 534 | 76408747 | 76408914 | 1.360000e-28 | 137.0 |
27 | TraesCS5B01G503900 | chr1B | 94.737 | 95 | 4 | 1 | 271 | 365 | 117282832 | 117282739 | 2.260000e-31 | 147.0 |
28 | TraesCS5B01G503900 | chrUn | 92.929 | 99 | 7 | 0 | 269 | 367 | 37006454 | 37006356 | 8.120000e-31 | 145.0 |
29 | TraesCS5B01G503900 | chrUn | 92.929 | 99 | 7 | 0 | 269 | 367 | 38258675 | 38258577 | 8.120000e-31 | 145.0 |
30 | TraesCS5B01G503900 | chrUn | 92.929 | 99 | 7 | 0 | 269 | 367 | 196709555 | 196709653 | 8.120000e-31 | 145.0 |
31 | TraesCS5B01G503900 | chrUn | 90.385 | 52 | 5 | 0 | 2348 | 2399 | 26140734 | 26140683 | 5.030000e-08 | 69.4 |
32 | TraesCS5B01G503900 | chr7B | 93.000 | 100 | 6 | 1 | 269 | 367 | 487811866 | 487811767 | 8.120000e-31 | 145.0 |
33 | TraesCS5B01G503900 | chr7B | 80.556 | 180 | 30 | 4 | 358 | 534 | 22748139 | 22748316 | 1.760000e-27 | 134.0 |
34 | TraesCS5B01G503900 | chr7B | 81.176 | 170 | 27 | 4 | 368 | 534 | 22627596 | 22627763 | 6.320000e-27 | 132.0 |
35 | TraesCS5B01G503900 | chr7B | 81.176 | 170 | 27 | 4 | 368 | 534 | 22806665 | 22806832 | 6.320000e-27 | 132.0 |
36 | TraesCS5B01G503900 | chr7B | 81.287 | 171 | 25 | 6 | 368 | 534 | 22914430 | 22914597 | 6.320000e-27 | 132.0 |
37 | TraesCS5B01G503900 | chr4D | 97.778 | 45 | 1 | 0 | 2677 | 2721 | 93392391 | 93392347 | 8.350000e-11 | 78.7 |
38 | TraesCS5B01G503900 | chr5A | 95.652 | 46 | 2 | 0 | 2351 | 2396 | 402024640 | 402024595 | 1.080000e-09 | 75.0 |
39 | TraesCS5B01G503900 | chr6B | 92.000 | 50 | 2 | 2 | 2354 | 2402 | 555856442 | 555856394 | 5.030000e-08 | 69.4 |
40 | TraesCS5B01G503900 | chr3D | 90.000 | 50 | 5 | 0 | 2348 | 2397 | 524715677 | 524715628 | 6.500000e-07 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G503900 | chr5B | 670116399 | 670119210 | 2811 | True | 5193.0 | 5193 | 100.00000 | 1 | 2812 | 1 | chr5B.!!$R1 | 2811 |
1 | TraesCS5B01G503900 | chr4A | 641398271 | 641402625 | 4354 | False | 611.0 | 1611 | 87.72025 | 1 | 2806 | 4 | chr4A.!!$F1 | 2805 |
2 | TraesCS5B01G503900 | chr5D | 530872772 | 530874828 | 2056 | True | 1082.5 | 1267 | 86.12600 | 267 | 2324 | 2 | chr5D.!!$R2 | 2057 |
3 | TraesCS5B01G503900 | chr2A | 683013600 | 683014794 | 1194 | True | 369.5 | 388 | 83.36850 | 994 | 2053 | 2 | chr2A.!!$R2 | 1059 |
4 | TraesCS5B01G503900 | chr2D | 539429043 | 539430242 | 1199 | True | 371.0 | 385 | 83.28900 | 994 | 2053 | 2 | chr2D.!!$R2 | 1059 |
5 | TraesCS5B01G503900 | chr2B | 643684783 | 643685963 | 1180 | True | 358.0 | 361 | 82.41200 | 994 | 2053 | 2 | chr2B.!!$R2 | 1059 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
865 | 2588 | 0.040603 | GACACCGTCTCGAACTCGTT | 60.041 | 55.0 | 0.0 | 0.0 | 40.8 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2520 | 4529 | 0.106819 | GCAGGGAGGCATCATCTGTT | 60.107 | 55.0 | 17.79 | 0.0 | 33.44 | 3.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 8.934697 | AGCCATTAGTAAGATAGATACCACAAA | 58.065 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
30 | 31 | 9.726438 | GCCATTAGTAAGATAGATACCACAAAT | 57.274 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
50 | 51 | 8.777413 | CACAAATAATATGATTGACACCGATCT | 58.223 | 33.333 | 0.00 | 0.00 | 34.83 | 2.75 |
51 | 52 | 9.342308 | ACAAATAATATGATTGACACCGATCTT | 57.658 | 29.630 | 0.00 | 0.00 | 34.83 | 2.40 |
55 | 56 | 7.664082 | AATATGATTGACACCGATCTTGATC | 57.336 | 36.000 | 0.78 | 0.78 | 34.83 | 2.92 |
68 | 70 | 5.005203 | CCGATCTTGATCAGAAACGAAGAAG | 59.995 | 44.000 | 10.69 | 7.71 | 37.48 | 2.85 |
72 | 74 | 4.257267 | TGATCAGAAACGAAGAAGCAGA | 57.743 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
89 | 91 | 1.214062 | GAGGACGGTGCAGAGACAG | 59.786 | 63.158 | 1.61 | 0.00 | 0.00 | 3.51 |
101 | 103 | 3.260128 | TGCAGAGACAGTCAGATTGATGT | 59.740 | 43.478 | 2.66 | 0.00 | 0.00 | 3.06 |
109 | 111 | 4.687948 | ACAGTCAGATTGATGTTGTCTTCG | 59.312 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
119 | 121 | 6.066054 | TGATGTTGTCTTCGTTTATTTGCA | 57.934 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
141 | 143 | 0.627451 | AGATGATGCCTCCCTGCAAA | 59.373 | 50.000 | 0.00 | 0.00 | 45.84 | 3.68 |
144 | 146 | 0.178967 | TGATGCCTCCCTGCAAACAA | 60.179 | 50.000 | 0.00 | 0.00 | 45.84 | 2.83 |
211 | 213 | 5.086104 | ACTTCAGCGTCACCATAATTACT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
220 | 222 | 6.128795 | GCGTCACCATAATTACTGCTCTAATC | 60.129 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
224 | 226 | 7.388776 | TCACCATAATTACTGCTCTAATCATGC | 59.611 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
233 | 235 | 4.132336 | TGCTCTAATCATGCTTGGATGTC | 58.868 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
235 | 237 | 4.375272 | CTCTAATCATGCTTGGATGTCGT | 58.625 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
240 | 242 | 0.107508 | ATGCTTGGATGTCGTCAGGG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
242 | 244 | 0.535335 | GCTTGGATGTCGTCAGGGTA | 59.465 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
243 | 245 | 1.471676 | GCTTGGATGTCGTCAGGGTAG | 60.472 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
245 | 247 | 1.182667 | TGGATGTCGTCAGGGTAGTG | 58.817 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
249 | 251 | 1.171308 | TGTCGTCAGGGTAGTGTAGC | 58.829 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
250 | 252 | 1.271762 | TGTCGTCAGGGTAGTGTAGCT | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
251 | 253 | 1.132643 | GTCGTCAGGGTAGTGTAGCTG | 59.867 | 57.143 | 0.00 | 0.00 | 0.00 | 4.24 |
252 | 254 | 1.003928 | TCGTCAGGGTAGTGTAGCTGA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
253 | 255 | 1.132643 | CGTCAGGGTAGTGTAGCTGAC | 59.867 | 57.143 | 0.00 | 0.00 | 38.15 | 3.51 |
254 | 256 | 2.168496 | GTCAGGGTAGTGTAGCTGACA | 58.832 | 52.381 | 0.00 | 0.00 | 40.36 | 3.58 |
255 | 257 | 2.761208 | GTCAGGGTAGTGTAGCTGACAT | 59.239 | 50.000 | 0.00 | 0.00 | 41.14 | 3.06 |
257 | 259 | 4.585162 | GTCAGGGTAGTGTAGCTGACATAT | 59.415 | 45.833 | 0.00 | 0.00 | 41.14 | 1.78 |
258 | 260 | 4.827835 | TCAGGGTAGTGTAGCTGACATATC | 59.172 | 45.833 | 0.00 | 0.00 | 41.14 | 1.63 |
259 | 261 | 4.021894 | CAGGGTAGTGTAGCTGACATATCC | 60.022 | 50.000 | 0.00 | 0.00 | 41.14 | 2.59 |
261 | 263 | 4.262079 | GGGTAGTGTAGCTGACATATCCAC | 60.262 | 50.000 | 0.00 | 0.00 | 41.14 | 4.02 |
262 | 264 | 4.341235 | GGTAGTGTAGCTGACATATCCACA | 59.659 | 45.833 | 0.00 | 0.00 | 41.14 | 4.17 |
264 | 266 | 4.026744 | AGTGTAGCTGACATATCCACACT | 58.973 | 43.478 | 7.20 | 7.20 | 41.14 | 3.55 |
265 | 267 | 4.098654 | AGTGTAGCTGACATATCCACACTC | 59.901 | 45.833 | 7.20 | 0.00 | 40.70 | 3.51 |
287 | 289 | 6.666980 | ACTCTTTATTTAGTACTCCCTCCGTT | 59.333 | 38.462 | 0.00 | 0.00 | 0.00 | 4.44 |
290 | 292 | 2.905415 | TTAGTACTCCCTCCGTTCCA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
321 | 323 | 6.823678 | AGAACGTTTTTGACACTAGTGTAG | 57.176 | 37.500 | 27.98 | 14.79 | 45.05 | 2.74 |
322 | 324 | 6.335777 | AGAACGTTTTTGACACTAGTGTAGT | 58.664 | 36.000 | 27.98 | 15.35 | 45.05 | 2.73 |
369 | 371 | 7.842887 | AGGATAGAGGGAGTATGTTTTAGTC | 57.157 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
371 | 373 | 8.734763 | AGGATAGAGGGAGTATGTTTTAGTCTA | 58.265 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
373 | 375 | 6.718522 | AGAGGGAGTATGTTTTAGTCTAGC | 57.281 | 41.667 | 0.00 | 0.00 | 0.00 | 3.42 |
383 | 387 | 5.925509 | TGTTTTAGTCTAGCCACACTCTTT | 58.074 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
427 | 432 | 7.843760 | AGGTTCATGGGGATAAATTTATGTTCA | 59.156 | 33.333 | 15.39 | 10.04 | 0.00 | 3.18 |
429 | 434 | 7.838079 | TCATGGGGATAAATTTATGTTCAGG | 57.162 | 36.000 | 15.39 | 11.07 | 0.00 | 3.86 |
459 | 464 | 1.555075 | AGCCACATATGACGTCCAACT | 59.445 | 47.619 | 14.12 | 0.00 | 0.00 | 3.16 |
460 | 465 | 1.665679 | GCCACATATGACGTCCAACTG | 59.334 | 52.381 | 14.12 | 7.93 | 0.00 | 3.16 |
464 | 469 | 4.454161 | CCACATATGACGTCCAACTGAAAA | 59.546 | 41.667 | 14.12 | 0.00 | 0.00 | 2.29 |
485 | 490 | 0.312416 | CCTAGAGCGTGCTTAGCGAT | 59.688 | 55.000 | 0.00 | 0.00 | 40.04 | 4.58 |
615 | 864 | 2.613977 | CGTGCCTTCCTTCAAGTCATCT | 60.614 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
630 | 879 | 3.264193 | AGTCATCTACCACATCCTTGCAA | 59.736 | 43.478 | 0.00 | 0.00 | 0.00 | 4.08 |
634 | 883 | 1.942657 | CTACCACATCCTTGCAATCCG | 59.057 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
636 | 885 | 1.064463 | ACCACATCCTTGCAATCCGAT | 60.064 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
643 | 1238 | 4.271696 | TCCTTGCAATCCGATACTATGG | 57.728 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
659 | 1254 | 1.956869 | ATGGTCACATGTGAGAGGGA | 58.043 | 50.000 | 28.54 | 11.12 | 40.75 | 4.20 |
664 | 1259 | 2.165437 | GTCACATGTGAGAGGGAGAGAC | 59.835 | 54.545 | 28.54 | 9.80 | 40.75 | 3.36 |
719 | 1434 | 2.640316 | AATTGCCGGGTCTAAGATCC | 57.360 | 50.000 | 2.18 | 0.00 | 0.00 | 3.36 |
721 | 1436 | 1.342672 | TTGCCGGGTCTAAGATCCCC | 61.343 | 60.000 | 2.18 | 0.00 | 40.54 | 4.81 |
730 | 1445 | 5.246307 | GGGTCTAAGATCCCCGAATATTTG | 58.754 | 45.833 | 0.00 | 0.00 | 37.89 | 2.32 |
734 | 1449 | 7.173390 | GGTCTAAGATCCCCGAATATTTGAAAG | 59.827 | 40.741 | 4.10 | 0.00 | 0.00 | 2.62 |
739 | 1936 | 2.362077 | CCCCGAATATTTGAAAGCCTGG | 59.638 | 50.000 | 4.10 | 0.00 | 0.00 | 4.45 |
744 | 1941 | 6.340522 | CCGAATATTTGAAAGCCTGGATTTT | 58.659 | 36.000 | 11.72 | 3.90 | 0.00 | 1.82 |
865 | 2588 | 0.040603 | GACACCGTCTCGAACTCGTT | 60.041 | 55.000 | 0.00 | 0.00 | 40.80 | 3.85 |
974 | 2700 | 4.612412 | TTTCGCCTGAACCGCCGT | 62.612 | 61.111 | 0.00 | 0.00 | 32.71 | 5.68 |
1353 | 3151 | 4.250305 | CCGGGCGAAGGGTATGGG | 62.250 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
1356 | 3154 | 2.509422 | GGCGAAGGGTATGGGTCC | 59.491 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
1363 | 3161 | 1.296002 | AGGGTATGGGTCCAAGAACC | 58.704 | 55.000 | 9.66 | 9.66 | 40.41 | 3.62 |
1372 | 3170 | 2.213499 | GGTCCAAGAACCGCTCATATG | 58.787 | 52.381 | 0.00 | 0.00 | 0.00 | 1.78 |
1373 | 3171 | 2.420129 | GGTCCAAGAACCGCTCATATGT | 60.420 | 50.000 | 1.90 | 0.00 | 0.00 | 2.29 |
1412 | 3284 | 2.111384 | GAAGGAGGCCAGTGACAGATA | 58.889 | 52.381 | 5.01 | 0.00 | 0.00 | 1.98 |
1441 | 3321 | 2.458951 | TGCGTTCATGTGCAAGTTTTC | 58.541 | 42.857 | 7.41 | 0.00 | 38.34 | 2.29 |
1486 | 3366 | 7.395190 | TGTTGGAGGATATTCACATTGAAAG | 57.605 | 36.000 | 0.00 | 0.00 | 40.12 | 2.62 |
1495 | 3375 | 9.970395 | GGATATTCACATTGAAAGCATAATTGA | 57.030 | 29.630 | 0.00 | 0.00 | 40.12 | 2.57 |
1507 | 3416 | 8.246180 | TGAAAGCATAATTGACTCCTGAATTTC | 58.754 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
1571 | 3514 | 6.374333 | TGAAGCATAATCTTGGTTTCCTGTAC | 59.626 | 38.462 | 0.00 | 0.00 | 37.44 | 2.90 |
1618 | 3564 | 6.210784 | TGCAGTTGTATCTTCTGTTAGGTAGT | 59.789 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1631 | 3577 | 4.217550 | TGTTAGGTAGTTTGGCAATGCTTC | 59.782 | 41.667 | 4.82 | 0.77 | 0.00 | 3.86 |
1663 | 3611 | 6.271159 | AGAAGGTAAACTCTTCTCAGGTTCAT | 59.729 | 38.462 | 0.00 | 0.00 | 45.35 | 2.57 |
1667 | 3615 | 2.625639 | ACTCTTCTCAGGTTCATGGGT | 58.374 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
1669 | 3617 | 4.366267 | ACTCTTCTCAGGTTCATGGGTAT | 58.634 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
1759 | 3707 | 1.345741 | TGCTGAGGTTGGACAGAAGAG | 59.654 | 52.381 | 0.00 | 0.00 | 36.38 | 2.85 |
1762 | 3710 | 2.634940 | CTGAGGTTGGACAGAAGAGGAA | 59.365 | 50.000 | 0.00 | 0.00 | 36.38 | 3.36 |
1805 | 3765 | 1.212935 | CTTGTACCTGGGAAGGATGGG | 59.787 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
1815 | 3775 | 2.308866 | GGGAAGGATGGGTTCTGAAGAA | 59.691 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1816 | 3776 | 3.615155 | GGAAGGATGGGTTCTGAAGAAG | 58.385 | 50.000 | 0.00 | 0.00 | 34.27 | 2.85 |
1817 | 3777 | 3.264450 | GGAAGGATGGGTTCTGAAGAAGA | 59.736 | 47.826 | 0.00 | 0.00 | 34.27 | 2.87 |
1829 | 3789 | 6.348868 | GGTTCTGAAGAAGAATGTTGGACATC | 60.349 | 42.308 | 0.00 | 0.00 | 46.53 | 3.06 |
1840 | 3800 | 3.588955 | TGTTGGACATCGATGTTCAGAG | 58.411 | 45.455 | 32.44 | 7.31 | 46.27 | 3.35 |
1842 | 3802 | 1.550072 | TGGACATCGATGTTCAGAGCA | 59.450 | 47.619 | 31.39 | 12.11 | 41.21 | 4.26 |
1849 | 3809 | 1.998315 | CGATGTTCAGAGCAACAGGAG | 59.002 | 52.381 | 0.00 | 0.00 | 39.63 | 3.69 |
1859 | 3819 | 1.203100 | AGCAACAGGAGGGCTTTCAAT | 60.203 | 47.619 | 0.00 | 0.00 | 33.21 | 2.57 |
1860 | 3827 | 1.620323 | GCAACAGGAGGGCTTTCAATT | 59.380 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
1868 | 3835 | 5.067805 | CAGGAGGGCTTTCAATTATGGTAAC | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1883 | 3861 | 2.756760 | TGGTAACAGGCGTAGAGTAAGG | 59.243 | 50.000 | 0.00 | 0.00 | 46.17 | 2.69 |
1917 | 3904 | 2.649190 | TGGCAACAGCACAAGTTCTAA | 58.351 | 42.857 | 0.00 | 0.00 | 46.17 | 2.10 |
1922 | 3909 | 4.555511 | GCAACAGCACAAGTTCTAAGAAGG | 60.556 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
1995 | 3982 | 3.305720 | AGAAAAGGGGGAAAGAAACACC | 58.694 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2128 | 4115 | 3.321682 | TGCTAAAACTTGGCTTGATGCTT | 59.678 | 39.130 | 0.00 | 0.00 | 42.39 | 3.91 |
2141 | 4128 | 4.641989 | GCTTGATGCTTATTTCAGAAGGGA | 59.358 | 41.667 | 0.00 | 0.00 | 38.95 | 4.20 |
2143 | 4130 | 5.698741 | TGATGCTTATTTCAGAAGGGAGA | 57.301 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
2144 | 4131 | 6.257994 | TGATGCTTATTTCAGAAGGGAGAT | 57.742 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
2146 | 4133 | 6.769822 | TGATGCTTATTTCAGAAGGGAGATTC | 59.230 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
2147 | 4134 | 5.118990 | TGCTTATTTCAGAAGGGAGATTCG | 58.881 | 41.667 | 0.00 | 0.00 | 34.27 | 3.34 |
2148 | 4135 | 5.104941 | TGCTTATTTCAGAAGGGAGATTCGA | 60.105 | 40.000 | 0.00 | 0.00 | 34.27 | 3.71 |
2149 | 4136 | 5.994668 | GCTTATTTCAGAAGGGAGATTCGAT | 59.005 | 40.000 | 0.00 | 0.00 | 34.27 | 3.59 |
2150 | 4137 | 6.147000 | GCTTATTTCAGAAGGGAGATTCGATC | 59.853 | 42.308 | 0.00 | 0.00 | 34.27 | 3.69 |
2151 | 4138 | 5.620738 | ATTTCAGAAGGGAGATTCGATCA | 57.379 | 39.130 | 0.00 | 0.00 | 34.27 | 2.92 |
2152 | 4139 | 5.620738 | TTTCAGAAGGGAGATTCGATCAT | 57.379 | 39.130 | 0.00 | 0.00 | 34.27 | 2.45 |
2153 | 4140 | 5.620738 | TTCAGAAGGGAGATTCGATCATT | 57.379 | 39.130 | 0.00 | 0.00 | 34.27 | 2.57 |
2154 | 4141 | 5.620738 | TCAGAAGGGAGATTCGATCATTT | 57.379 | 39.130 | 0.00 | 0.00 | 34.27 | 2.32 |
2155 | 4142 | 5.363101 | TCAGAAGGGAGATTCGATCATTTG | 58.637 | 41.667 | 0.00 | 0.00 | 34.27 | 2.32 |
2156 | 4143 | 4.024218 | CAGAAGGGAGATTCGATCATTTGC | 60.024 | 45.833 | 0.00 | 0.00 | 34.27 | 3.68 |
2157 | 4144 | 2.856222 | AGGGAGATTCGATCATTTGCC | 58.144 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
2158 | 4145 | 1.882623 | GGGAGATTCGATCATTTGCCC | 59.117 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
2161 | 4148 | 0.040067 | GATTCGATCATTTGCCCCGC | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2162 | 4149 | 0.751277 | ATTCGATCATTTGCCCCGCA | 60.751 | 50.000 | 0.00 | 0.00 | 36.47 | 5.69 |
2163 | 4150 | 0.751277 | TTCGATCATTTGCCCCGCAT | 60.751 | 50.000 | 0.00 | 0.00 | 38.76 | 4.73 |
2164 | 4151 | 0.751277 | TCGATCATTTGCCCCGCATT | 60.751 | 50.000 | 0.00 | 0.00 | 38.76 | 3.56 |
2167 | 4154 | 2.030007 | CGATCATTTGCCCCGCATTATT | 60.030 | 45.455 | 0.00 | 0.00 | 38.76 | 1.40 |
2169 | 4156 | 3.176552 | TCATTTGCCCCGCATTATTTG | 57.823 | 42.857 | 0.00 | 0.00 | 38.76 | 2.32 |
2171 | 4158 | 0.539051 | TTTGCCCCGCATTATTTGGG | 59.461 | 50.000 | 0.00 | 0.00 | 38.76 | 4.12 |
2173 | 4160 | 3.947173 | CCCCGCATTATTTGGGCA | 58.053 | 55.556 | 0.00 | 0.00 | 41.88 | 5.36 |
2174 | 4161 | 1.441311 | CCCCGCATTATTTGGGCAC | 59.559 | 57.895 | 0.00 | 0.00 | 41.88 | 5.01 |
2218 | 4220 | 3.173953 | TGGGGACTTGATCATTTGCTT | 57.826 | 42.857 | 0.00 | 0.00 | 0.00 | 3.91 |
2270 | 4272 | 5.931724 | CCCCATTTTACTTGGATTTGTTGAC | 59.068 | 40.000 | 0.00 | 0.00 | 36.26 | 3.18 |
2340 | 4342 | 9.942526 | ATTCCAGATACTCCCTTTAATTCAAAT | 57.057 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2341 | 4343 | 9.768215 | TTCCAGATACTCCCTTTAATTCAAATT | 57.232 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2368 | 4370 | 8.702163 | ATTTTACAAAATTGTACTATGGCTGC | 57.298 | 30.769 | 5.53 | 0.00 | 42.84 | 5.25 |
2369 | 4371 | 4.355543 | ACAAAATTGTACTATGGCTGCG | 57.644 | 40.909 | 0.00 | 0.00 | 40.16 | 5.18 |
2370 | 4372 | 4.006989 | ACAAAATTGTACTATGGCTGCGA | 58.993 | 39.130 | 0.00 | 0.00 | 40.16 | 5.10 |
2371 | 4373 | 4.142687 | ACAAAATTGTACTATGGCTGCGAC | 60.143 | 41.667 | 0.00 | 0.00 | 40.16 | 5.19 |
2372 | 4374 | 2.979814 | ATTGTACTATGGCTGCGACA | 57.020 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2373 | 4375 | 2.753055 | TTGTACTATGGCTGCGACAA | 57.247 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2374 | 4376 | 2.979814 | TGTACTATGGCTGCGACAAT | 57.020 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2375 | 4377 | 3.260475 | TGTACTATGGCTGCGACAATT | 57.740 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
2376 | 4378 | 4.394439 | TGTACTATGGCTGCGACAATTA | 57.606 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
2377 | 4379 | 4.760878 | TGTACTATGGCTGCGACAATTAA | 58.239 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2378 | 4380 | 5.364778 | TGTACTATGGCTGCGACAATTAAT | 58.635 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2379 | 4381 | 5.820423 | TGTACTATGGCTGCGACAATTAATT | 59.180 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2380 | 4382 | 5.835113 | ACTATGGCTGCGACAATTAATTT | 57.165 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
2381 | 4383 | 5.581605 | ACTATGGCTGCGACAATTAATTTG | 58.418 | 37.500 | 0.00 | 0.00 | 41.36 | 2.32 |
2382 | 4384 | 3.229276 | TGGCTGCGACAATTAATTTGG | 57.771 | 42.857 | 0.00 | 0.00 | 39.80 | 3.28 |
2383 | 4385 | 2.822561 | TGGCTGCGACAATTAATTTGGA | 59.177 | 40.909 | 0.00 | 0.00 | 39.80 | 3.53 |
2384 | 4386 | 3.446873 | TGGCTGCGACAATTAATTTGGAT | 59.553 | 39.130 | 0.00 | 0.00 | 39.80 | 3.41 |
2385 | 4387 | 4.081752 | TGGCTGCGACAATTAATTTGGATT | 60.082 | 37.500 | 0.00 | 0.00 | 39.80 | 3.01 |
2386 | 4388 | 4.268405 | GGCTGCGACAATTAATTTGGATTG | 59.732 | 41.667 | 0.00 | 7.11 | 39.80 | 2.67 |
2387 | 4389 | 4.268405 | GCTGCGACAATTAATTTGGATTGG | 59.732 | 41.667 | 0.00 | 0.00 | 39.80 | 3.16 |
2388 | 4390 | 5.649557 | CTGCGACAATTAATTTGGATTGGA | 58.350 | 37.500 | 0.00 | 0.00 | 39.80 | 3.53 |
2389 | 4391 | 5.649557 | TGCGACAATTAATTTGGATTGGAG | 58.350 | 37.500 | 0.00 | 7.25 | 39.80 | 3.86 |
2390 | 4392 | 5.043248 | GCGACAATTAATTTGGATTGGAGG | 58.957 | 41.667 | 0.00 | 0.00 | 39.80 | 4.30 |
2391 | 4393 | 5.591099 | CGACAATTAATTTGGATTGGAGGG | 58.409 | 41.667 | 0.00 | 0.00 | 39.80 | 4.30 |
2392 | 4394 | 5.451798 | CGACAATTAATTTGGATTGGAGGGG | 60.452 | 44.000 | 0.00 | 0.00 | 39.80 | 4.79 |
2393 | 4395 | 4.721274 | ACAATTAATTTGGATTGGAGGGGG | 59.279 | 41.667 | 0.00 | 0.00 | 39.80 | 5.40 |
2394 | 4396 | 4.642489 | ATTAATTTGGATTGGAGGGGGT | 57.358 | 40.909 | 0.00 | 0.00 | 0.00 | 4.95 |
2395 | 4397 | 5.759773 | ATTAATTTGGATTGGAGGGGGTA | 57.240 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
2396 | 4398 | 5.554034 | TTAATTTGGATTGGAGGGGGTAA | 57.446 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
2397 | 4399 | 2.911552 | TTTGGATTGGAGGGGGTAAC | 57.088 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
2398 | 4400 | 1.761711 | TTGGATTGGAGGGGGTAACA | 58.238 | 50.000 | 0.00 | 0.00 | 39.74 | 2.41 |
2399 | 4401 | 1.994399 | TGGATTGGAGGGGGTAACAT | 58.006 | 50.000 | 0.00 | 0.00 | 39.74 | 2.71 |
2400 | 4402 | 3.153043 | TGGATTGGAGGGGGTAACATA | 57.847 | 47.619 | 0.00 | 0.00 | 39.74 | 2.29 |
2401 | 4403 | 3.687045 | TGGATTGGAGGGGGTAACATAT | 58.313 | 45.455 | 0.00 | 0.00 | 39.74 | 1.78 |
2402 | 4404 | 3.397618 | TGGATTGGAGGGGGTAACATATG | 59.602 | 47.826 | 0.00 | 0.00 | 39.74 | 1.78 |
2429 | 4438 | 5.170748 | CACCTTTTGCAATTCCTTGTATCC | 58.829 | 41.667 | 0.00 | 0.00 | 34.69 | 2.59 |
2437 | 4446 | 5.655974 | TGCAATTCCTTGTATCCATTTGCTA | 59.344 | 36.000 | 0.00 | 0.00 | 39.08 | 3.49 |
2447 | 4456 | 6.829849 | TGTATCCATTTGCTACAGATGATGA | 58.170 | 36.000 | 0.05 | 0.00 | 28.98 | 2.92 |
2451 | 4460 | 5.945191 | TCCATTTGCTACAGATGATGAACAA | 59.055 | 36.000 | 0.05 | 0.00 | 28.98 | 2.83 |
2455 | 4464 | 9.229784 | CATTTGCTACAGATGATGAACAAATAC | 57.770 | 33.333 | 0.00 | 0.00 | 37.23 | 1.89 |
2473 | 4482 | 7.879070 | ACAAATACCATGATATGATTGACAGC | 58.121 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
2490 | 4499 | 3.048602 | CGACCAAGAGGACGGTGT | 58.951 | 61.111 | 0.00 | 0.00 | 46.84 | 4.16 |
2536 | 4545 | 3.281727 | TTGTAACAGATGATGCCTCCC | 57.718 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2542 | 4551 | 0.851469 | AGATGATGCCTCCCTGCAAT | 59.149 | 50.000 | 0.00 | 0.00 | 45.84 | 3.56 |
2565 | 4574 | 2.719798 | GCACGTTTATGCAAGCTATGG | 58.280 | 47.619 | 0.00 | 0.00 | 45.39 | 2.74 |
2583 | 4592 | 0.884704 | GGGCGTGTTGCTCTGAAAGA | 60.885 | 55.000 | 0.00 | 0.00 | 42.52 | 2.52 |
2586 | 4595 | 2.404215 | GCGTGTTGCTCTGAAAGACTA | 58.596 | 47.619 | 0.00 | 0.00 | 38.67 | 2.59 |
2594 | 4603 | 6.597672 | TGTTGCTCTGAAAGACTAAAACTTCA | 59.402 | 34.615 | 0.00 | 0.00 | 38.67 | 3.02 |
2603 | 4612 | 2.132762 | ACTAAAACTTCAGCGTCACCG | 58.867 | 47.619 | 0.00 | 0.00 | 37.07 | 4.94 |
2632 | 4641 | 5.256474 | ACTGCTCTAATAATGCTTGGTTGT | 58.744 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
2634 | 4643 | 5.252547 | TGCTCTAATAATGCTTGGTTGTCA | 58.747 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
2640 | 4649 | 1.180029 | ATGCTTGGTTGTCATCAGCC | 58.820 | 50.000 | 0.00 | 0.00 | 43.74 | 4.85 |
2673 | 4682 | 5.531287 | GGACCAATCAGTGTATCCCAATTAC | 59.469 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2674 | 4683 | 6.327386 | ACCAATCAGTGTATCCCAATTACT | 57.673 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2675 | 4684 | 6.122277 | ACCAATCAGTGTATCCCAATTACTG | 58.878 | 40.000 | 0.00 | 0.00 | 39.95 | 2.74 |
2676 | 4685 | 5.532406 | CCAATCAGTGTATCCCAATTACTGG | 59.468 | 44.000 | 0.00 | 0.00 | 45.97 | 4.00 |
2677 | 4686 | 5.975988 | ATCAGTGTATCCCAATTACTGGT | 57.024 | 39.130 | 0.00 | 0.00 | 44.76 | 4.00 |
2678 | 4687 | 5.097742 | TCAGTGTATCCCAATTACTGGTG | 57.902 | 43.478 | 0.00 | 0.00 | 44.76 | 4.17 |
2679 | 4688 | 4.534500 | TCAGTGTATCCCAATTACTGGTGT | 59.466 | 41.667 | 0.00 | 0.00 | 44.76 | 4.16 |
2680 | 4689 | 5.722441 | TCAGTGTATCCCAATTACTGGTGTA | 59.278 | 40.000 | 0.00 | 0.00 | 44.76 | 2.90 |
2681 | 4690 | 6.385759 | TCAGTGTATCCCAATTACTGGTGTAT | 59.614 | 38.462 | 0.00 | 0.00 | 44.76 | 2.29 |
2682 | 4691 | 6.706270 | CAGTGTATCCCAATTACTGGTGTATC | 59.294 | 42.308 | 0.00 | 0.00 | 44.76 | 2.24 |
2683 | 4692 | 6.615726 | AGTGTATCCCAATTACTGGTGTATCT | 59.384 | 38.462 | 0.00 | 0.00 | 44.76 | 1.98 |
2684 | 4693 | 6.929606 | GTGTATCCCAATTACTGGTGTATCTC | 59.070 | 42.308 | 0.00 | 0.00 | 44.76 | 2.75 |
2685 | 4694 | 6.844388 | TGTATCCCAATTACTGGTGTATCTCT | 59.156 | 38.462 | 0.00 | 0.00 | 44.76 | 3.10 |
2686 | 4695 | 6.831664 | ATCCCAATTACTGGTGTATCTCTT | 57.168 | 37.500 | 0.00 | 0.00 | 44.76 | 2.85 |
2687 | 4696 | 7.931015 | ATCCCAATTACTGGTGTATCTCTTA | 57.069 | 36.000 | 0.00 | 0.00 | 44.76 | 2.10 |
2745 | 4754 | 6.205658 | ACTCCTATCTTTCAGAAAACAAGCAC | 59.794 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
2774 | 4783 | 8.153479 | TGCATTACTGTGTACATATGAATTCC | 57.847 | 34.615 | 10.38 | 0.00 | 0.00 | 3.01 |
2783 | 4792 | 7.655732 | TGTGTACATATGAATTCCGTAATCAGG | 59.344 | 37.037 | 10.38 | 0.00 | 0.00 | 3.86 |
2788 | 4797 | 9.003658 | ACATATGAATTCCGTAATCAGGATTTC | 57.996 | 33.333 | 10.38 | 10.98 | 43.25 | 2.17 |
2798 | 4807 | 4.460948 | AATCAGGATTTCACATGCCAAC | 57.539 | 40.909 | 0.00 | 0.00 | 0.00 | 3.77 |
2801 | 4810 | 3.640498 | TCAGGATTTCACATGCCAACAAA | 59.360 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2802 | 4811 | 3.991773 | CAGGATTTCACATGCCAACAAAG | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
2804 | 4813 | 4.021719 | AGGATTTCACATGCCAACAAAGAG | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 9.376075 | GATCAAGATCGGTGTCAATCATATTAT | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
30 | 31 | 8.367156 | TGATCAAGATCGGTGTCAATCATATTA | 58.633 | 33.333 | 0.00 | 0.00 | 40.63 | 0.98 |
31 | 32 | 7.219322 | TGATCAAGATCGGTGTCAATCATATT | 58.781 | 34.615 | 0.00 | 0.00 | 40.63 | 1.28 |
32 | 33 | 6.762333 | TGATCAAGATCGGTGTCAATCATAT | 58.238 | 36.000 | 0.00 | 0.00 | 40.63 | 1.78 |
50 | 51 | 4.631131 | TCTGCTTCTTCGTTTCTGATCAA | 58.369 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
51 | 52 | 4.240888 | CTCTGCTTCTTCGTTTCTGATCA | 58.759 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
55 | 56 | 2.734079 | GTCCTCTGCTTCTTCGTTTCTG | 59.266 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
68 | 70 | 2.125753 | CTCTGCACCGTCCTCTGC | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
72 | 74 | 1.528292 | GACTGTCTCTGCACCGTCCT | 61.528 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
89 | 91 | 5.597813 | AACGAAGACAACATCAATCTGAC | 57.402 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
101 | 103 | 6.125327 | TCTGTTGCAAATAAACGAAGACAA | 57.875 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
109 | 111 | 5.413499 | AGGCATCATCTGTTGCAAATAAAC | 58.587 | 37.500 | 0.00 | 0.00 | 41.26 | 2.01 |
119 | 121 | 0.106819 | GCAGGGAGGCATCATCTGTT | 60.107 | 55.000 | 17.79 | 0.00 | 33.44 | 3.16 |
141 | 143 | 1.953686 | AGCTTGGCATAAACGTGTTGT | 59.046 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
144 | 146 | 3.605634 | TGATAGCTTGGCATAAACGTGT | 58.394 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
184 | 186 | 0.032130 | TGGTGACGCTGAAGTCTCAC | 59.968 | 55.000 | 5.56 | 0.00 | 41.47 | 3.51 |
186 | 188 | 2.941453 | TATGGTGACGCTGAAGTCTC | 57.059 | 50.000 | 5.56 | 2.50 | 41.47 | 3.36 |
188 | 190 | 5.005779 | CAGTAATTATGGTGACGCTGAAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 41.30 | 3.01 |
211 | 213 | 4.132336 | GACATCCAAGCATGATTAGAGCA | 58.868 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
220 | 222 | 1.012086 | CCTGACGACATCCAAGCATG | 58.988 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
224 | 226 | 1.825474 | ACTACCCTGACGACATCCAAG | 59.175 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
233 | 235 | 1.132643 | GTCAGCTACACTACCCTGACG | 59.867 | 57.143 | 4.17 | 0.00 | 43.02 | 4.35 |
235 | 237 | 2.597578 | TGTCAGCTACACTACCCTGA | 57.402 | 50.000 | 0.00 | 0.00 | 31.43 | 3.86 |
240 | 242 | 5.067936 | AGTGTGGATATGTCAGCTACACTAC | 59.932 | 44.000 | 15.73 | 7.10 | 43.64 | 2.73 |
242 | 244 | 4.026744 | AGTGTGGATATGTCAGCTACACT | 58.973 | 43.478 | 13.11 | 13.11 | 42.09 | 3.55 |
243 | 245 | 4.098654 | AGAGTGTGGATATGTCAGCTACAC | 59.901 | 45.833 | 0.00 | 0.00 | 42.09 | 2.90 |
245 | 247 | 4.927978 | AGAGTGTGGATATGTCAGCTAC | 57.072 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
249 | 251 | 9.823647 | ACTAAATAAAGAGTGTGGATATGTCAG | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
255 | 257 | 8.921205 | GGGAGTACTAAATAAAGAGTGTGGATA | 58.079 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
257 | 259 | 6.958192 | AGGGAGTACTAAATAAAGAGTGTGGA | 59.042 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
258 | 260 | 7.184067 | AGGGAGTACTAAATAAAGAGTGTGG | 57.816 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
259 | 261 | 7.266400 | GGAGGGAGTACTAAATAAAGAGTGTG | 58.734 | 42.308 | 0.00 | 0.00 | 0.00 | 3.82 |
261 | 263 | 6.096564 | ACGGAGGGAGTACTAAATAAAGAGTG | 59.903 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
262 | 264 | 6.193504 | ACGGAGGGAGTACTAAATAAAGAGT | 58.806 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
264 | 266 | 6.097412 | GGAACGGAGGGAGTACTAAATAAAGA | 59.903 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
265 | 267 | 6.127253 | TGGAACGGAGGGAGTACTAAATAAAG | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
312 | 314 | 8.707938 | AAGAACGTTTTTAACACTACACTAGT | 57.292 | 30.769 | 0.46 | 0.00 | 40.28 | 2.57 |
349 | 351 | 6.776603 | GGCTAGACTAAAACATACTCCCTCTA | 59.223 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
350 | 352 | 5.599242 | GGCTAGACTAAAACATACTCCCTCT | 59.401 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
366 | 368 | 8.079211 | TCATTAATAAAGAGTGTGGCTAGACT | 57.921 | 34.615 | 0.00 | 0.00 | 32.31 | 3.24 |
367 | 369 | 8.894768 | ATCATTAATAAAGAGTGTGGCTAGAC | 57.105 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
369 | 371 | 8.893219 | TGATCATTAATAAAGAGTGTGGCTAG | 57.107 | 34.615 | 0.00 | 0.00 | 0.00 | 3.42 |
371 | 373 | 9.851686 | TTATGATCATTAATAAAGAGTGTGGCT | 57.148 | 29.630 | 14.65 | 0.00 | 0.00 | 4.75 |
427 | 432 | 5.013183 | GTCATATGTGGCTCCTTAATACCCT | 59.987 | 44.000 | 1.90 | 0.00 | 0.00 | 4.34 |
429 | 434 | 4.929808 | CGTCATATGTGGCTCCTTAATACC | 59.070 | 45.833 | 1.90 | 0.00 | 0.00 | 2.73 |
459 | 464 | 3.334583 | AAGCACGCTCTAGGATTTTCA | 57.665 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
460 | 465 | 3.246463 | GCTAAGCACGCTCTAGGATTTTC | 59.754 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
464 | 469 | 0.312416 | CGCTAAGCACGCTCTAGGAT | 59.688 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
485 | 490 | 5.063204 | GCACCAATATTGAGGCACATAGTA | 58.937 | 41.667 | 17.23 | 0.00 | 0.00 | 1.82 |
615 | 864 | 1.557371 | TCGGATTGCAAGGATGTGGTA | 59.443 | 47.619 | 4.94 | 0.00 | 0.00 | 3.25 |
630 | 879 | 4.832823 | TCACATGTGACCATAGTATCGGAT | 59.167 | 41.667 | 24.56 | 0.00 | 34.14 | 4.18 |
634 | 883 | 5.279206 | CCCTCTCACATGTGACCATAGTATC | 60.279 | 48.000 | 24.56 | 0.00 | 35.46 | 2.24 |
636 | 885 | 3.960755 | CCCTCTCACATGTGACCATAGTA | 59.039 | 47.826 | 24.56 | 1.83 | 35.46 | 1.82 |
643 | 1238 | 2.165437 | GTCTCTCCCTCTCACATGTGAC | 59.835 | 54.545 | 24.56 | 7.77 | 35.46 | 3.67 |
659 | 1254 | 3.960102 | CCTATCTCTTGCCTTGAGTCTCT | 59.040 | 47.826 | 0.65 | 0.00 | 33.59 | 3.10 |
664 | 1259 | 1.767681 | AGCCCTATCTCTTGCCTTGAG | 59.232 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
697 | 1300 | 3.699538 | GGATCTTAGACCCGGCAATTTTT | 59.300 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
699 | 1414 | 2.422945 | GGGATCTTAGACCCGGCAATTT | 60.423 | 50.000 | 0.00 | 0.00 | 36.56 | 1.82 |
719 | 1434 | 3.287222 | TCCAGGCTTTCAAATATTCGGG | 58.713 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
721 | 1436 | 7.832503 | AAAAATCCAGGCTTTCAAATATTCG | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 3.34 |
773 | 1970 | 8.649591 | TGTGTGTACAAAGGGTTCTACTAAATA | 58.350 | 33.333 | 0.00 | 0.00 | 32.88 | 1.40 |
806 | 2529 | 1.248101 | AAAAAGATTCGGGTGGGCCG | 61.248 | 55.000 | 0.00 | 0.00 | 34.97 | 6.13 |
865 | 2588 | 5.548056 | TGGGCCTGATTTTATTTTTACCCAA | 59.452 | 36.000 | 4.53 | 0.00 | 40.57 | 4.12 |
946 | 2672 | 1.004277 | TCAGGCGAAACCCTATGCTTT | 59.996 | 47.619 | 0.00 | 0.00 | 40.58 | 3.51 |
1353 | 3151 | 2.906354 | ACATATGAGCGGTTCTTGGAC | 58.094 | 47.619 | 10.38 | 0.00 | 0.00 | 4.02 |
1383 | 3181 | 2.026449 | ACTGGCCTCCTTCTCAGAATTG | 60.026 | 50.000 | 3.32 | 0.00 | 0.00 | 2.32 |
1412 | 3284 | 2.339418 | CACATGAACGCATTGCCAAAT | 58.661 | 42.857 | 0.00 | 0.00 | 30.68 | 2.32 |
1422 | 3302 | 2.458951 | TGAAAACTTGCACATGAACGC | 58.541 | 42.857 | 0.00 | 0.00 | 0.00 | 4.84 |
1441 | 3321 | 7.148639 | CCAACAGCAAATGAAGAAATCAGATTG | 60.149 | 37.037 | 0.00 | 0.00 | 42.53 | 2.67 |
1486 | 3366 | 5.066505 | ACCGAAATTCAGGAGTCAATTATGC | 59.933 | 40.000 | 10.02 | 0.00 | 0.00 | 3.14 |
1507 | 3416 | 4.091509 | GCTACAAGTTGTCATACTGAACCG | 59.908 | 45.833 | 12.82 | 0.00 | 0.00 | 4.44 |
1618 | 3564 | 1.702182 | TGTCAGGAAGCATTGCCAAA | 58.298 | 45.000 | 4.70 | 0.00 | 36.97 | 3.28 |
1631 | 3577 | 5.859495 | AGAAGAGTTTACCTTCTTGTCAGG | 58.141 | 41.667 | 0.00 | 0.00 | 45.71 | 3.86 |
1663 | 3611 | 1.281199 | ATGGTGGCTCTGCATACCCA | 61.281 | 55.000 | 10.95 | 0.00 | 36.80 | 4.51 |
1667 | 3615 | 0.179076 | CGACATGGTGGCTCTGCATA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.14 |
1669 | 3617 | 2.046988 | CGACATGGTGGCTCTGCA | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 4.41 |
1759 | 3707 | 2.329379 | CACTGTCTACTTGAGCGTTCC | 58.671 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
1762 | 3710 | 0.603569 | CCCACTGTCTACTTGAGCGT | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
1805 | 3765 | 6.566197 | ATGTCCAACATTCTTCTTCAGAAC | 57.434 | 37.500 | 0.00 | 0.00 | 44.70 | 3.01 |
1815 | 3775 | 4.578871 | TGAACATCGATGTCCAACATTCT | 58.421 | 39.130 | 30.06 | 12.18 | 39.27 | 2.40 |
1816 | 3776 | 4.631377 | TCTGAACATCGATGTCCAACATTC | 59.369 | 41.667 | 30.06 | 21.25 | 39.27 | 2.67 |
1817 | 3777 | 4.578871 | TCTGAACATCGATGTCCAACATT | 58.421 | 39.130 | 30.06 | 13.69 | 39.27 | 2.71 |
1829 | 3789 | 1.998315 | CTCCTGTTGCTCTGAACATCG | 59.002 | 52.381 | 0.00 | 0.00 | 35.32 | 3.84 |
1840 | 3800 | 1.260544 | ATTGAAAGCCCTCCTGTTGC | 58.739 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1842 | 3802 | 4.026052 | CCATAATTGAAAGCCCTCCTGTT | 58.974 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1849 | 3809 | 4.441495 | GCCTGTTACCATAATTGAAAGCCC | 60.441 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
1859 | 3819 | 5.068198 | CCTTACTCTACGCCTGTTACCATAA | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1860 | 3827 | 4.581824 | CCTTACTCTACGCCTGTTACCATA | 59.418 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
1868 | 3835 | 1.481871 | TTCCCCTTACTCTACGCCTG | 58.518 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1870 | 3837 | 3.339253 | TTTTTCCCCTTACTCTACGCC | 57.661 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
1899 | 3877 | 4.531332 | CTTCTTAGAACTTGTGCTGTTGC | 58.469 | 43.478 | 0.00 | 0.00 | 40.20 | 4.17 |
1917 | 3904 | 3.393687 | TCATACCCATGCTTACCCTTCT | 58.606 | 45.455 | 0.00 | 0.00 | 31.73 | 2.85 |
1922 | 3909 | 4.973168 | TCTGAATCATACCCATGCTTACC | 58.027 | 43.478 | 0.00 | 0.00 | 31.73 | 2.85 |
2128 | 4115 | 6.731292 | TGATCGAATCTCCCTTCTGAAATA | 57.269 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2141 | 4128 | 1.597742 | CGGGGCAAATGATCGAATCT | 58.402 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2143 | 4130 | 0.751277 | TGCGGGGCAAATGATCGAAT | 60.751 | 50.000 | 0.00 | 0.00 | 34.76 | 3.34 |
2144 | 4131 | 0.751277 | ATGCGGGGCAAATGATCGAA | 60.751 | 50.000 | 0.00 | 0.00 | 43.62 | 3.71 |
2146 | 4133 | 0.950836 | TAATGCGGGGCAAATGATCG | 59.049 | 50.000 | 0.00 | 0.00 | 43.62 | 3.69 |
2147 | 4134 | 3.665745 | AATAATGCGGGGCAAATGATC | 57.334 | 42.857 | 0.00 | 0.00 | 43.62 | 2.92 |
2148 | 4135 | 3.494749 | CCAAATAATGCGGGGCAAATGAT | 60.495 | 43.478 | 0.00 | 0.00 | 43.62 | 2.45 |
2149 | 4136 | 2.158986 | CCAAATAATGCGGGGCAAATGA | 60.159 | 45.455 | 0.00 | 0.00 | 43.62 | 2.57 |
2150 | 4137 | 2.211806 | CCAAATAATGCGGGGCAAATG | 58.788 | 47.619 | 0.00 | 0.00 | 43.62 | 2.32 |
2151 | 4138 | 1.140652 | CCCAAATAATGCGGGGCAAAT | 59.859 | 47.619 | 0.00 | 0.00 | 43.62 | 2.32 |
2152 | 4139 | 0.539051 | CCCAAATAATGCGGGGCAAA | 59.461 | 50.000 | 0.00 | 0.00 | 43.62 | 3.68 |
2153 | 4140 | 2.206635 | CCCAAATAATGCGGGGCAA | 58.793 | 52.632 | 0.00 | 0.00 | 43.62 | 4.52 |
2154 | 4141 | 3.947173 | CCCAAATAATGCGGGGCA | 58.053 | 55.556 | 0.00 | 0.00 | 44.86 | 5.36 |
2156 | 4143 | 1.042559 | AGTGCCCAAATAATGCGGGG | 61.043 | 55.000 | 0.00 | 0.00 | 43.72 | 5.73 |
2157 | 4144 | 0.823460 | AAGTGCCCAAATAATGCGGG | 59.177 | 50.000 | 0.00 | 0.00 | 43.42 | 6.13 |
2158 | 4145 | 1.476085 | TCAAGTGCCCAAATAATGCGG | 59.524 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
2161 | 4148 | 6.238266 | GCAAATGATCAAGTGCCCAAATAATG | 60.238 | 38.462 | 18.64 | 0.00 | 0.00 | 1.90 |
2162 | 4149 | 5.818857 | GCAAATGATCAAGTGCCCAAATAAT | 59.181 | 36.000 | 18.64 | 0.00 | 0.00 | 1.28 |
2163 | 4150 | 5.177326 | GCAAATGATCAAGTGCCCAAATAA | 58.823 | 37.500 | 18.64 | 0.00 | 0.00 | 1.40 |
2164 | 4151 | 4.757594 | GCAAATGATCAAGTGCCCAAATA | 58.242 | 39.130 | 18.64 | 0.00 | 0.00 | 1.40 |
2167 | 4154 | 2.747396 | GCAAATGATCAAGTGCCCAA | 57.253 | 45.000 | 18.64 | 0.00 | 0.00 | 4.12 |
2171 | 4158 | 0.179129 | CGGGGCAAATGATCAAGTGC | 60.179 | 55.000 | 20.36 | 20.36 | 36.24 | 4.40 |
2173 | 4160 | 0.611618 | TGCGGGGCAAATGATCAAGT | 60.612 | 50.000 | 0.00 | 0.00 | 34.76 | 3.16 |
2174 | 4161 | 0.748450 | ATGCGGGGCAAATGATCAAG | 59.252 | 50.000 | 0.00 | 0.00 | 43.62 | 3.02 |
2270 | 4272 | 5.619132 | AAATTGAGGAATAGGGCAAATGG | 57.381 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2342 | 4344 | 9.150348 | GCAGCCATAGTACAATTTTGTAAAATT | 57.850 | 29.630 | 8.99 | 8.99 | 46.42 | 1.82 |
2343 | 4345 | 7.487829 | CGCAGCCATAGTACAATTTTGTAAAAT | 59.512 | 33.333 | 4.79 | 0.00 | 44.46 | 1.82 |
2344 | 4346 | 6.804295 | CGCAGCCATAGTACAATTTTGTAAAA | 59.196 | 34.615 | 4.79 | 0.00 | 44.46 | 1.52 |
2345 | 4347 | 6.149640 | TCGCAGCCATAGTACAATTTTGTAAA | 59.850 | 34.615 | 4.79 | 0.00 | 44.46 | 2.01 |
2346 | 4348 | 5.644206 | TCGCAGCCATAGTACAATTTTGTAA | 59.356 | 36.000 | 4.79 | 0.00 | 44.46 | 2.41 |
2347 | 4349 | 5.064198 | GTCGCAGCCATAGTACAATTTTGTA | 59.936 | 40.000 | 0.00 | 0.00 | 42.35 | 2.41 |
2348 | 4350 | 4.006989 | TCGCAGCCATAGTACAATTTTGT | 58.993 | 39.130 | 1.08 | 1.08 | 44.86 | 2.83 |
2349 | 4351 | 4.142708 | TGTCGCAGCCATAGTACAATTTTG | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
2350 | 4352 | 4.006989 | TGTCGCAGCCATAGTACAATTTT | 58.993 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
2351 | 4353 | 3.605634 | TGTCGCAGCCATAGTACAATTT | 58.394 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
2352 | 4354 | 3.260475 | TGTCGCAGCCATAGTACAATT | 57.740 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
2353 | 4355 | 2.979814 | TGTCGCAGCCATAGTACAAT | 57.020 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2354 | 4356 | 2.753055 | TTGTCGCAGCCATAGTACAA | 57.247 | 45.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2355 | 4357 | 2.979814 | ATTGTCGCAGCCATAGTACA | 57.020 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2356 | 4358 | 5.924475 | ATTAATTGTCGCAGCCATAGTAC | 57.076 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
2357 | 4359 | 6.238621 | CCAAATTAATTGTCGCAGCCATAGTA | 60.239 | 38.462 | 0.39 | 0.00 | 37.32 | 1.82 |
2358 | 4360 | 5.450412 | CCAAATTAATTGTCGCAGCCATAGT | 60.450 | 40.000 | 0.39 | 0.00 | 37.32 | 2.12 |
2359 | 4361 | 4.977963 | CCAAATTAATTGTCGCAGCCATAG | 59.022 | 41.667 | 0.39 | 0.00 | 37.32 | 2.23 |
2360 | 4362 | 4.642437 | TCCAAATTAATTGTCGCAGCCATA | 59.358 | 37.500 | 0.39 | 0.00 | 37.32 | 2.74 |
2361 | 4363 | 3.446873 | TCCAAATTAATTGTCGCAGCCAT | 59.553 | 39.130 | 0.39 | 0.00 | 37.32 | 4.40 |
2362 | 4364 | 2.822561 | TCCAAATTAATTGTCGCAGCCA | 59.177 | 40.909 | 0.39 | 0.00 | 37.32 | 4.75 |
2363 | 4365 | 3.502191 | TCCAAATTAATTGTCGCAGCC | 57.498 | 42.857 | 0.39 | 0.00 | 37.32 | 4.85 |
2364 | 4366 | 4.268405 | CCAATCCAAATTAATTGTCGCAGC | 59.732 | 41.667 | 0.39 | 0.00 | 37.32 | 5.25 |
2365 | 4367 | 5.649557 | TCCAATCCAAATTAATTGTCGCAG | 58.350 | 37.500 | 0.39 | 0.00 | 37.32 | 5.18 |
2366 | 4368 | 5.394005 | CCTCCAATCCAAATTAATTGTCGCA | 60.394 | 40.000 | 0.39 | 0.00 | 37.32 | 5.10 |
2367 | 4369 | 5.043248 | CCTCCAATCCAAATTAATTGTCGC | 58.957 | 41.667 | 0.39 | 0.00 | 37.32 | 5.19 |
2368 | 4370 | 5.451798 | CCCCTCCAATCCAAATTAATTGTCG | 60.452 | 44.000 | 0.39 | 0.00 | 37.32 | 4.35 |
2369 | 4371 | 5.163311 | CCCCCTCCAATCCAAATTAATTGTC | 60.163 | 44.000 | 0.39 | 0.00 | 37.32 | 3.18 |
2370 | 4372 | 4.721274 | CCCCCTCCAATCCAAATTAATTGT | 59.279 | 41.667 | 0.39 | 0.00 | 37.32 | 2.71 |
2371 | 4373 | 4.721274 | ACCCCCTCCAATCCAAATTAATTG | 59.279 | 41.667 | 0.39 | 0.00 | 38.84 | 2.32 |
2372 | 4374 | 4.971661 | ACCCCCTCCAATCCAAATTAATT | 58.028 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2373 | 4375 | 4.642489 | ACCCCCTCCAATCCAAATTAAT | 57.358 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
2374 | 4376 | 5.222568 | TGTTACCCCCTCCAATCCAAATTAA | 60.223 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2375 | 4377 | 4.295238 | TGTTACCCCCTCCAATCCAAATTA | 59.705 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2376 | 4378 | 3.078305 | TGTTACCCCCTCCAATCCAAATT | 59.922 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2377 | 4379 | 2.657459 | TGTTACCCCCTCCAATCCAAAT | 59.343 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2378 | 4380 | 2.074579 | TGTTACCCCCTCCAATCCAAA | 58.925 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2379 | 4381 | 1.761711 | TGTTACCCCCTCCAATCCAA | 58.238 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2380 | 4382 | 1.994399 | ATGTTACCCCCTCCAATCCA | 58.006 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2381 | 4383 | 3.397955 | ACATATGTTACCCCCTCCAATCC | 59.602 | 47.826 | 1.41 | 0.00 | 0.00 | 3.01 |
2382 | 4384 | 4.398319 | CACATATGTTACCCCCTCCAATC | 58.602 | 47.826 | 5.37 | 0.00 | 0.00 | 2.67 |
2383 | 4385 | 3.140144 | CCACATATGTTACCCCCTCCAAT | 59.860 | 47.826 | 5.37 | 0.00 | 0.00 | 3.16 |
2384 | 4386 | 2.512056 | CCACATATGTTACCCCCTCCAA | 59.488 | 50.000 | 5.37 | 0.00 | 0.00 | 3.53 |
2385 | 4387 | 2.131854 | CCACATATGTTACCCCCTCCA | 58.868 | 52.381 | 5.37 | 0.00 | 0.00 | 3.86 |
2386 | 4388 | 1.202891 | GCCACATATGTTACCCCCTCC | 60.203 | 57.143 | 5.37 | 0.00 | 0.00 | 4.30 |
2387 | 4389 | 1.493022 | TGCCACATATGTTACCCCCTC | 59.507 | 52.381 | 5.37 | 0.00 | 0.00 | 4.30 |
2388 | 4390 | 1.214424 | GTGCCACATATGTTACCCCCT | 59.786 | 52.381 | 5.37 | 0.00 | 0.00 | 4.79 |
2389 | 4391 | 1.687563 | GTGCCACATATGTTACCCCC | 58.312 | 55.000 | 5.37 | 0.00 | 0.00 | 5.40 |
2390 | 4392 | 1.214424 | AGGTGCCACATATGTTACCCC | 59.786 | 52.381 | 21.47 | 12.04 | 32.81 | 4.95 |
2391 | 4393 | 2.729028 | AGGTGCCACATATGTTACCC | 57.271 | 50.000 | 21.47 | 13.29 | 32.81 | 3.69 |
2392 | 4394 | 4.743493 | CAAAAGGTGCCACATATGTTACC | 58.257 | 43.478 | 19.12 | 19.12 | 32.65 | 2.85 |
2429 | 4438 | 9.229784 | GTATTTGTTCATCATCTGTAGCAAATG | 57.770 | 33.333 | 0.00 | 0.00 | 35.46 | 2.32 |
2437 | 4446 | 9.803507 | ATATCATGGTATTTGTTCATCATCTGT | 57.196 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
2447 | 4456 | 8.355169 | GCTGTCAATCATATCATGGTATTTGTT | 58.645 | 33.333 | 9.28 | 0.00 | 0.00 | 2.83 |
2451 | 4460 | 6.369890 | GTCGCTGTCAATCATATCATGGTATT | 59.630 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
2455 | 4464 | 3.434641 | GGTCGCTGTCAATCATATCATGG | 59.565 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
2473 | 4482 | 1.372997 | CACACCGTCCTCTTGGTCG | 60.373 | 63.158 | 0.00 | 0.00 | 42.85 | 4.79 |
2520 | 4529 | 0.106819 | GCAGGGAGGCATCATCTGTT | 60.107 | 55.000 | 17.79 | 0.00 | 33.44 | 3.16 |
2525 | 4534 | 0.554305 | TGATTGCAGGGAGGCATCAT | 59.446 | 50.000 | 0.00 | 0.00 | 44.48 | 2.45 |
2526 | 4535 | 0.106868 | CTGATTGCAGGGAGGCATCA | 60.107 | 55.000 | 0.00 | 0.00 | 44.48 | 3.07 |
2527 | 4536 | 1.453762 | GCTGATTGCAGGGAGGCATC | 61.454 | 60.000 | 0.00 | 0.00 | 44.48 | 3.91 |
2528 | 4537 | 1.455217 | GCTGATTGCAGGGAGGCAT | 60.455 | 57.895 | 0.00 | 0.00 | 44.48 | 4.40 |
2542 | 4551 | 1.522668 | AGCTTGCATAAACGTGCTGA | 58.477 | 45.000 | 0.00 | 0.00 | 45.27 | 4.26 |
2564 | 4573 | 0.884704 | TCTTTCAGAGCAACACGCCC | 60.885 | 55.000 | 0.00 | 0.00 | 44.04 | 6.13 |
2565 | 4574 | 0.235926 | GTCTTTCAGAGCAACACGCC | 59.764 | 55.000 | 0.00 | 0.00 | 44.04 | 5.68 |
2603 | 4612 | 9.057089 | ACCAAGCATTATTAGAGCAGTAATTAC | 57.943 | 33.333 | 7.57 | 7.57 | 0.00 | 1.89 |
2632 | 4641 | 2.158445 | GGTCCCTAGACTAGGCTGATGA | 60.158 | 54.545 | 21.54 | 10.97 | 44.86 | 2.92 |
2634 | 4643 | 1.860240 | TGGTCCCTAGACTAGGCTGAT | 59.140 | 52.381 | 21.54 | 0.00 | 44.86 | 2.90 |
2640 | 4649 | 4.282496 | ACACTGATTGGTCCCTAGACTAG | 58.718 | 47.826 | 2.18 | 2.18 | 43.05 | 2.57 |
2673 | 4682 | 5.536538 | TGGTAGCTGATAAGAGATACACCAG | 59.463 | 44.000 | 0.00 | 0.00 | 36.70 | 4.00 |
2674 | 4683 | 5.454966 | TGGTAGCTGATAAGAGATACACCA | 58.545 | 41.667 | 0.00 | 0.00 | 36.70 | 4.17 |
2675 | 4684 | 6.406692 | TTGGTAGCTGATAAGAGATACACC | 57.593 | 41.667 | 0.00 | 0.00 | 36.70 | 4.16 |
2676 | 4685 | 8.768955 | CATTTTGGTAGCTGATAAGAGATACAC | 58.231 | 37.037 | 0.00 | 0.00 | 36.70 | 2.90 |
2677 | 4686 | 8.704668 | TCATTTTGGTAGCTGATAAGAGATACA | 58.295 | 33.333 | 0.00 | 0.00 | 36.70 | 2.29 |
2678 | 4687 | 9.717942 | ATCATTTTGGTAGCTGATAAGAGATAC | 57.282 | 33.333 | 0.00 | 0.00 | 34.66 | 2.24 |
2687 | 4696 | 8.995027 | TGGTTTATATCATTTTGGTAGCTGAT | 57.005 | 30.769 | 0.00 | 0.00 | 33.21 | 2.90 |
2721 | 4730 | 6.205464 | TGTGCTTGTTTTCTGAAAGATAGGAG | 59.795 | 38.462 | 2.75 | 0.00 | 46.36 | 3.69 |
2722 | 4731 | 6.061441 | TGTGCTTGTTTTCTGAAAGATAGGA | 58.939 | 36.000 | 2.75 | 1.21 | 46.36 | 2.94 |
2723 | 4732 | 6.205464 | TCTGTGCTTGTTTTCTGAAAGATAGG | 59.795 | 38.462 | 2.75 | 0.00 | 46.36 | 2.57 |
2724 | 4733 | 7.194607 | TCTGTGCTTGTTTTCTGAAAGATAG | 57.805 | 36.000 | 2.75 | 3.64 | 46.36 | 2.08 |
2725 | 4734 | 7.587629 | CATCTGTGCTTGTTTTCTGAAAGATA | 58.412 | 34.615 | 2.75 | 0.00 | 46.36 | 1.98 |
2726 | 4735 | 6.444633 | CATCTGTGCTTGTTTTCTGAAAGAT | 58.555 | 36.000 | 2.75 | 0.00 | 46.36 | 2.40 |
2727 | 4736 | 5.824429 | CATCTGTGCTTGTTTTCTGAAAGA | 58.176 | 37.500 | 2.75 | 0.00 | 44.68 | 2.52 |
2745 | 4754 | 7.951530 | TCATATGTACACAGTAATGCATCTG | 57.048 | 36.000 | 12.58 | 12.58 | 37.65 | 2.90 |
2751 | 4760 | 8.365399 | ACGGAATTCATATGTACACAGTAATG | 57.635 | 34.615 | 7.93 | 0.00 | 0.00 | 1.90 |
2762 | 4771 | 8.924511 | AAATCCTGATTACGGAATTCATATGT | 57.075 | 30.769 | 7.93 | 2.72 | 33.55 | 2.29 |
2763 | 4772 | 9.002600 | TGAAATCCTGATTACGGAATTCATATG | 57.997 | 33.333 | 7.93 | 0.00 | 42.51 | 1.78 |
2764 | 4773 | 9.003658 | GTGAAATCCTGATTACGGAATTCATAT | 57.996 | 33.333 | 7.93 | 0.00 | 46.42 | 1.78 |
2766 | 4775 | 6.828273 | TGTGAAATCCTGATTACGGAATTCAT | 59.172 | 34.615 | 7.93 | 0.00 | 46.42 | 2.57 |
2767 | 4776 | 6.176896 | TGTGAAATCCTGATTACGGAATTCA | 58.823 | 36.000 | 7.93 | 5.67 | 44.18 | 2.57 |
2774 | 4783 | 3.627123 | TGGCATGTGAAATCCTGATTACG | 59.373 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2778 | 4787 | 3.433343 | TGTTGGCATGTGAAATCCTGAT | 58.567 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2783 | 4792 | 4.240096 | CCTCTTTGTTGGCATGTGAAATC | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.