Multiple sequence alignment - TraesCS5B01G503800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G503800 chr5B 100.000 3993 0 0 1 3993 670113084 670117076 0.000000e+00 7374.0
1 TraesCS5B01G503800 chr5B 95.859 797 11 7 3 777 446584844 446585640 0.000000e+00 1269.0
2 TraesCS5B01G503800 chr5B 96.724 641 20 1 1 640 17560309 17559669 0.000000e+00 1066.0
3 TraesCS5B01G503800 chr5B 96.412 641 22 1 1 640 376338524 376339164 0.000000e+00 1055.0
4 TraesCS5B01G503800 chr5D 85.998 1814 140 57 1667 3418 530870687 530872448 0.000000e+00 1838.0
5 TraesCS5B01G503800 chr5D 86.465 761 74 17 777 1535 530869752 530870485 0.000000e+00 808.0
6 TraesCS5B01G503800 chr5D 93.289 149 9 1 3804 3952 530872772 530872919 6.720000e-53 219.0
7 TraesCS5B01G503800 chr4A 83.263 1422 153 39 2352 3731 641403609 641402231 0.000000e+00 1229.0
8 TraesCS5B01G503800 chr4A 96.880 641 19 1 1 640 704152358 704152998 0.000000e+00 1072.0
9 TraesCS5B01G503800 chr4A 90.777 618 33 11 773 1386 641405192 641404595 0.000000e+00 804.0
10 TraesCS5B01G503800 chr4A 80.714 560 59 26 1649 2191 641404227 641403700 1.350000e-104 390.0
11 TraesCS5B01G503800 chr4A 89.437 142 12 2 3495 3635 641398500 641398361 4.100000e-40 176.0
12 TraesCS5B01G503800 chr7B 94.598 796 24 4 1 777 73327156 73326361 0.000000e+00 1214.0
13 TraesCS5B01G503800 chr7B 93.392 802 32 10 1 782 713959040 713959840 0.000000e+00 1168.0
14 TraesCS5B01G503800 chr7B 91.299 816 38 11 1 786 557438687 557437875 0.000000e+00 1083.0
15 TraesCS5B01G503800 chr1B 92.707 809 30 4 1 780 629667643 629666835 0.000000e+00 1140.0
16 TraesCS5B01G503800 chr1B 96.568 641 17 3 1 640 9729464 9728828 0.000000e+00 1057.0
17 TraesCS5B01G503800 chr2B 92.203 808 33 8 1 779 794739867 794739061 0.000000e+00 1116.0
18 TraesCS5B01G503800 chr2B 96.412 641 22 1 1 640 682846646 682846006 0.000000e+00 1055.0
19 TraesCS5B01G503800 chr2B 92.000 50 4 0 3731 3780 679898348 679898299 1.990000e-08 71.3
20 TraesCS5B01G503800 chr2B 90.385 52 5 0 3729 3780 633269575 633269626 7.160000e-08 69.4
21 TraesCS5B01G503800 chr3B 96.724 641 20 1 1 640 768200291 768200931 0.000000e+00 1066.0
22 TraesCS5B01G503800 chr3B 86.928 459 16 10 366 783 188231824 188231369 3.610000e-130 475.0
23 TraesCS5B01G503800 chr3B 96.667 150 3 2 632 780 624233423 624233275 8.570000e-62 248.0
24 TraesCS5B01G503800 chr4B 96.724 641 17 2 1 640 134897566 134898203 0.000000e+00 1064.0
25 TraesCS5B01G503800 chr4B 84.742 485 26 12 328 779 1812697 1813166 3.660000e-120 442.0
26 TraesCS5B01G503800 chr3A 97.931 145 3 0 635 779 669179684 669179828 6.620000e-63 252.0
27 TraesCS5B01G503800 chr4D 97.778 45 1 0 3407 3451 93392347 93392391 1.190000e-10 78.7
28 TraesCS5B01G503800 chr5A 95.652 46 2 0 3732 3777 402024595 402024640 1.540000e-09 75.0
29 TraesCS5B01G503800 chr2D 92.000 50 4 0 3731 3780 566989100 566989051 1.990000e-08 71.3
30 TraesCS5B01G503800 chr2D 88.462 52 5 1 3729 3780 533660179 533660229 1.200000e-05 62.1
31 TraesCS5B01G503800 chr2A 92.000 50 4 0 3731 3780 706753003 706752954 1.990000e-08 71.3
32 TraesCS5B01G503800 chrUn 90.385 52 5 0 3729 3780 26140683 26140734 7.160000e-08 69.4
33 TraesCS5B01G503800 chr6B 92.000 50 2 2 3726 3774 555856394 555856442 7.160000e-08 69.4
34 TraesCS5B01G503800 chr3D 90.000 50 5 0 3731 3780 524715628 524715677 9.260000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G503800 chr5B 670113084 670117076 3992 False 7374.00 7374 100.00000 1 3993 1 chr5B.!!$F3 3992
1 TraesCS5B01G503800 chr5B 446584844 446585640 796 False 1269.00 1269 95.85900 3 777 1 chr5B.!!$F2 774
2 TraesCS5B01G503800 chr5B 17559669 17560309 640 True 1066.00 1066 96.72400 1 640 1 chr5B.!!$R1 639
3 TraesCS5B01G503800 chr5B 376338524 376339164 640 False 1055.00 1055 96.41200 1 640 1 chr5B.!!$F1 639
4 TraesCS5B01G503800 chr5D 530869752 530872919 3167 False 955.00 1838 88.58400 777 3952 3 chr5D.!!$F1 3175
5 TraesCS5B01G503800 chr4A 704152358 704152998 640 False 1072.00 1072 96.88000 1 640 1 chr4A.!!$F1 639
6 TraesCS5B01G503800 chr4A 641398361 641405192 6831 True 649.75 1229 86.04775 773 3731 4 chr4A.!!$R1 2958
7 TraesCS5B01G503800 chr7B 73326361 73327156 795 True 1214.00 1214 94.59800 1 777 1 chr7B.!!$R1 776
8 TraesCS5B01G503800 chr7B 713959040 713959840 800 False 1168.00 1168 93.39200 1 782 1 chr7B.!!$F1 781
9 TraesCS5B01G503800 chr7B 557437875 557438687 812 True 1083.00 1083 91.29900 1 786 1 chr7B.!!$R2 785
10 TraesCS5B01G503800 chr1B 629666835 629667643 808 True 1140.00 1140 92.70700 1 780 1 chr1B.!!$R2 779
11 TraesCS5B01G503800 chr1B 9728828 9729464 636 True 1057.00 1057 96.56800 1 640 1 chr1B.!!$R1 639
12 TraesCS5B01G503800 chr2B 794739061 794739867 806 True 1116.00 1116 92.20300 1 779 1 chr2B.!!$R3 778
13 TraesCS5B01G503800 chr2B 682846006 682846646 640 True 1055.00 1055 96.41200 1 640 1 chr2B.!!$R2 639
14 TraesCS5B01G503800 chr3B 768200291 768200931 640 False 1066.00 1066 96.72400 1 640 1 chr3B.!!$F1 639
15 TraesCS5B01G503800 chr4B 134897566 134898203 637 False 1064.00 1064 96.72400 1 640 1 chr4B.!!$F2 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 357 0.979665 CAGGAGAAGGTGAAGGAGCA 59.020 55.0 0.0 0.0 0.0 4.26 F
1238 1285 0.253044 CTCCGGGAAGAAGATTGGCA 59.747 55.0 0.0 0.0 0.0 4.92 F
1554 1715 0.391263 GTGGACAGGAGCGGGTTAAG 60.391 60.0 0.0 0.0 0.0 1.85 F
2482 2669 0.105778 GCAGGGCAGTAGCTTCTAGG 59.894 60.0 0.0 0.0 41.7 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1698 0.323957 AACTTAACCCGCTCCTGTCC 59.676 55.0 0.0 0.0 0.00 4.02 R
2413 2599 0.173708 AGGCTTCGACTCGGTGAATC 59.826 55.0 0.0 0.0 0.00 2.52 R
2545 2735 0.379669 GCAGAGCACGGATTTCCATG 59.620 55.0 0.0 0.0 35.14 3.66 R
3965 4214 0.040067 GATTCGATCATTTGCCCCGC 60.040 55.0 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.007842 GTCCTCCTCCTCCTCTTCCTT 59.992 57.143 0.00 0.00 0.00 3.36
355 357 0.979665 CAGGAGAAGGTGAAGGAGCA 59.020 55.000 0.00 0.00 0.00 4.26
631 633 4.992688 TGCCATGTTTAGCCGAAATTTAG 58.007 39.130 0.00 0.00 0.00 1.85
633 635 4.359706 CCATGTTTAGCCGAAATTTAGCC 58.640 43.478 8.64 0.00 0.00 3.93
634 636 4.359706 CATGTTTAGCCGAAATTTAGCCC 58.640 43.478 8.64 0.00 0.00 5.19
635 637 3.692690 TGTTTAGCCGAAATTTAGCCCT 58.307 40.909 8.64 2.99 0.00 5.19
860 901 7.839680 AGAAAAATGACCAAAGTATGAGGTT 57.160 32.000 0.00 0.00 35.36 3.50
861 902 7.661040 AGAAAAATGACCAAAGTATGAGGTTG 58.339 34.615 0.00 0.00 35.36 3.77
878 919 4.070009 AGGTTGTTTCTGTAATTCGGTCC 58.930 43.478 0.00 0.00 0.00 4.46
879 920 3.816523 GGTTGTTTCTGTAATTCGGTCCA 59.183 43.478 0.00 0.00 0.00 4.02
880 921 4.083484 GGTTGTTTCTGTAATTCGGTCCAG 60.083 45.833 0.00 0.00 0.00 3.86
881 922 3.071479 TGTTTCTGTAATTCGGTCCAGC 58.929 45.455 0.00 0.00 0.00 4.85
882 923 3.071479 GTTTCTGTAATTCGGTCCAGCA 58.929 45.455 0.00 0.00 0.00 4.41
883 924 2.672961 TCTGTAATTCGGTCCAGCAG 57.327 50.000 0.00 0.00 0.00 4.24
884 925 2.176045 TCTGTAATTCGGTCCAGCAGA 58.824 47.619 0.00 0.00 0.00 4.26
1140 1187 2.342279 CTGGTCGTCCTCGCCAAA 59.658 61.111 0.00 0.00 40.49 3.28
1227 1274 2.042162 AGTACTAGTGAACCTCCGGGAA 59.958 50.000 5.39 0.00 36.25 3.97
1238 1285 0.253044 CTCCGGGAAGAAGATTGGCA 59.747 55.000 0.00 0.00 0.00 4.92
1242 1289 1.408683 CGGGAAGAAGATTGGCATCCA 60.409 52.381 3.67 0.00 0.00 3.41
1243 1290 2.305009 GGGAAGAAGATTGGCATCCAG 58.695 52.381 3.67 0.00 33.81 3.86
1246 1293 4.446889 GGGAAGAAGATTGGCATCCAGTAT 60.447 45.833 3.67 0.00 33.81 2.12
1250 1297 6.705863 AGAAGATTGGCATCCAGTATTTTC 57.294 37.500 0.00 0.00 33.81 2.29
1278 1326 0.523968 CTTCCAATGCGCGGTCAATG 60.524 55.000 8.83 1.01 0.00 2.82
1284 1332 2.202298 GCGCGGTCAATGGTTTCG 60.202 61.111 8.83 0.00 0.00 3.46
1321 1369 5.364778 CGTTCTCTCTCTCTCTCTATGGAA 58.635 45.833 0.00 0.00 0.00 3.53
1324 1372 7.307989 CGTTCTCTCTCTCTCTCTATGGAATTC 60.308 44.444 0.00 0.00 0.00 2.17
1382 1430 1.235724 GTCCTTAGTTTGTTGCGGCT 58.764 50.000 0.00 0.00 0.00 5.52
1391 1439 1.153353 TTGTTGCGGCTGTAGCTTAC 58.847 50.000 0.00 0.00 41.70 2.34
1394 1442 1.737793 GTTGCGGCTGTAGCTTACATT 59.262 47.619 0.00 0.00 41.70 2.71
1395 1443 2.107950 TGCGGCTGTAGCTTACATTT 57.892 45.000 0.00 0.00 41.70 2.32
1396 1444 1.737236 TGCGGCTGTAGCTTACATTTG 59.263 47.619 0.00 0.00 41.70 2.32
1402 1450 4.399303 GGCTGTAGCTTACATTTGGATGTT 59.601 41.667 3.63 0.00 42.72 2.71
1403 1451 5.449177 GGCTGTAGCTTACATTTGGATGTTC 60.449 44.000 3.63 0.00 42.72 3.18
1407 1466 6.597672 TGTAGCTTACATTTGGATGTTCGAAT 59.402 34.615 0.00 0.00 43.92 3.34
1409 1468 4.500477 GCTTACATTTGGATGTTCGAATGC 59.500 41.667 0.00 0.00 43.92 3.56
1412 1471 4.269183 ACATTTGGATGTTCGAATGCCTA 58.731 39.130 0.00 0.00 43.92 3.93
1416 1475 3.270027 TGGATGTTCGAATGCCTACAAG 58.730 45.455 0.00 0.00 0.00 3.16
1417 1476 2.032178 GGATGTTCGAATGCCTACAAGC 59.968 50.000 0.00 0.00 0.00 4.01
1422 1481 1.550524 TCGAATGCCTACAAGCTGTCT 59.449 47.619 0.00 0.00 0.00 3.41
1424 1483 2.012673 GAATGCCTACAAGCTGTCTGG 58.987 52.381 0.00 0.00 0.00 3.86
1431 1490 2.281761 AAGCTGTCTGGTTGGGCG 60.282 61.111 0.00 0.00 34.77 6.13
1448 1515 1.905922 GCGCTTGAGCTCCTGTTGAC 61.906 60.000 12.15 0.00 39.32 3.18
1452 1519 0.880278 TTGAGCTCCTGTTGACGCAC 60.880 55.000 12.15 0.00 0.00 5.34
1461 1544 4.680237 TTGACGCACTGCCTCCCG 62.680 66.667 0.00 0.00 0.00 5.14
1463 1546 3.755628 GACGCACTGCCTCCCGTA 61.756 66.667 0.00 0.00 33.63 4.02
1476 1559 4.223477 TGCCTCCCGTAGTTAGTTTTACAT 59.777 41.667 0.00 0.00 0.00 2.29
1478 1561 5.750547 GCCTCCCGTAGTTAGTTTTACATAC 59.249 44.000 0.00 0.00 0.00 2.39
1526 1609 1.072965 GATACAGGCAGAATCAGGGGG 59.927 57.143 0.00 0.00 0.00 5.40
1531 1614 2.054453 GCAGAATCAGGGGGTTGCC 61.054 63.158 0.00 0.00 0.00 4.52
1537 1698 2.519119 ATCAGGGGGTTGCCATGGTG 62.519 60.000 14.67 0.54 0.00 4.17
1540 1701 2.679996 GGGGTTGCCATGGTGGAC 60.680 66.667 14.67 9.47 40.96 4.02
1541 1702 2.117206 GGGTTGCCATGGTGGACA 59.883 61.111 14.67 0.00 40.96 4.02
1542 1703 1.978617 GGGTTGCCATGGTGGACAG 60.979 63.158 14.67 0.00 40.96 3.51
1546 1707 2.439156 GCCATGGTGGACAGGAGC 60.439 66.667 14.67 0.00 40.96 4.70
1547 1708 2.124983 CCATGGTGGACAGGAGCG 60.125 66.667 2.57 0.00 40.96 5.03
1554 1715 0.391263 GTGGACAGGAGCGGGTTAAG 60.391 60.000 0.00 0.00 0.00 1.85
1561 1722 5.211174 ACAGGAGCGGGTTAAGTTATATC 57.789 43.478 0.00 0.00 0.00 1.63
1562 1723 4.900054 ACAGGAGCGGGTTAAGTTATATCT 59.100 41.667 0.00 0.00 0.00 1.98
1563 1724 5.365895 ACAGGAGCGGGTTAAGTTATATCTT 59.634 40.000 1.81 1.81 0.00 2.40
1564 1725 6.552350 ACAGGAGCGGGTTAAGTTATATCTTA 59.448 38.462 0.00 0.00 0.00 2.10
1565 1726 6.867293 CAGGAGCGGGTTAAGTTATATCTTAC 59.133 42.308 3.24 0.79 30.87 2.34
1566 1727 6.552350 AGGAGCGGGTTAAGTTATATCTTACA 59.448 38.462 3.24 0.00 30.87 2.41
1567 1728 7.234988 AGGAGCGGGTTAAGTTATATCTTACAT 59.765 37.037 3.24 0.00 30.87 2.29
1568 1729 7.876582 GGAGCGGGTTAAGTTATATCTTACATT 59.123 37.037 3.24 0.00 30.87 2.71
1569 1730 8.828688 AGCGGGTTAAGTTATATCTTACATTC 57.171 34.615 3.24 0.00 30.87 2.67
1578 1739 9.905713 AAGTTATATCTTACATTCTTGCAGGAA 57.094 29.630 14.17 14.17 0.00 3.36
1595 1757 1.133790 GGAAATGCAAGCTAGGCACAG 59.866 52.381 14.45 0.00 45.23 3.66
1599 1761 1.238439 TGCAAGCTAGGCACAGAAAC 58.762 50.000 8.77 0.00 36.11 2.78
1608 1770 1.750778 AGGCACAGAAACCAAGTGTTG 59.249 47.619 0.00 0.00 37.23 3.33
1609 1771 1.476488 GGCACAGAAACCAAGTGTTGT 59.524 47.619 0.00 0.00 37.23 3.32
1611 1773 3.243068 GGCACAGAAACCAAGTGTTGTAG 60.243 47.826 0.00 0.00 37.23 2.74
1615 1779 6.027749 CACAGAAACCAAGTGTTGTAGAAAC 58.972 40.000 0.00 0.00 37.23 2.78
1628 1792 4.582701 TGTAGAAACACAAAAGGGCATG 57.417 40.909 0.00 0.00 0.00 4.06
1629 1793 2.531522 AGAAACACAAAAGGGCATGC 57.468 45.000 9.90 9.90 0.00 4.06
1630 1794 1.761784 AGAAACACAAAAGGGCATGCA 59.238 42.857 21.36 0.00 0.00 3.96
1631 1795 1.866601 GAAACACAAAAGGGCATGCAC 59.133 47.619 21.36 17.78 0.00 4.57
1632 1796 1.122227 AACACAAAAGGGCATGCACT 58.878 45.000 19.14 19.14 0.00 4.40
1633 1797 1.122227 ACACAAAAGGGCATGCACTT 58.878 45.000 29.51 29.51 42.18 3.16
1634 1798 1.202557 ACACAAAAGGGCATGCACTTG 60.203 47.619 34.75 25.97 38.98 3.16
1635 1799 1.068895 CACAAAAGGGCATGCACTTGA 59.931 47.619 34.75 0.00 38.98 3.02
1636 1800 1.761784 ACAAAAGGGCATGCACTTGAA 59.238 42.857 34.75 0.00 38.98 2.69
1640 1804 4.888326 AAAGGGCATGCACTTGAATTTA 57.112 36.364 34.75 0.00 38.98 1.40
1641 1805 4.460948 AAGGGCATGCACTTGAATTTAG 57.539 40.909 33.73 0.00 38.40 1.85
1642 1806 2.762327 AGGGCATGCACTTGAATTTAGG 59.238 45.455 19.14 0.00 0.00 2.69
1643 1807 2.760092 GGGCATGCACTTGAATTTAGGA 59.240 45.455 21.36 0.00 0.00 2.94
1644 1808 3.385755 GGGCATGCACTTGAATTTAGGAT 59.614 43.478 21.36 0.00 0.00 3.24
1645 1809 4.584325 GGGCATGCACTTGAATTTAGGATA 59.416 41.667 21.36 0.00 0.00 2.59
1649 1813 7.416664 GGCATGCACTTGAATTTAGGATAGAAA 60.417 37.037 21.36 0.00 0.00 2.52
1651 1815 7.391148 TGCACTTGAATTTAGGATAGAAACC 57.609 36.000 0.00 0.00 0.00 3.27
1653 1817 7.450014 TGCACTTGAATTTAGGATAGAAACCAA 59.550 33.333 0.00 0.00 0.00 3.67
1654 1818 7.970614 GCACTTGAATTTAGGATAGAAACCAAG 59.029 37.037 0.00 0.00 36.67 3.61
1655 1819 9.231297 CACTTGAATTTAGGATAGAAACCAAGA 57.769 33.333 0.00 0.00 35.51 3.02
1656 1820 9.232473 ACTTGAATTTAGGATAGAAACCAAGAC 57.768 33.333 0.00 0.00 35.51 3.01
1657 1821 9.231297 CTTGAATTTAGGATAGAAACCAAGACA 57.769 33.333 0.00 0.00 34.75 3.41
1663 1827 8.754991 TTAGGATAGAAACCAAGACAAAAACA 57.245 30.769 0.00 0.00 0.00 2.83
1665 1829 6.833933 AGGATAGAAACCAAGACAAAAACAGT 59.166 34.615 0.00 0.00 0.00 3.55
1670 1834 6.868339 AGAAACCAAGACAAAAACAGTTTCAG 59.132 34.615 13.34 0.00 42.40 3.02
1687 1851 1.021390 CAGAGGGTGACGAATGGTGC 61.021 60.000 0.00 0.00 0.00 5.01
1688 1852 1.194781 AGAGGGTGACGAATGGTGCT 61.195 55.000 0.00 0.00 0.00 4.40
1693 1857 1.665679 GGTGACGAATGGTGCTATGTG 59.334 52.381 0.00 0.00 0.00 3.21
1694 1858 1.062587 GTGACGAATGGTGCTATGTGC 59.937 52.381 0.00 0.00 43.25 4.57
1737 1901 2.743664 GTTTTTGCCAATGGAATCAGGC 59.256 45.455 2.05 0.00 44.80 4.85
1741 1905 1.197812 GCCAATGGAATCAGGCCTTT 58.802 50.000 0.00 0.00 40.39 3.11
1742 1906 1.134610 GCCAATGGAATCAGGCCTTTG 60.135 52.381 0.00 2.79 40.39 2.77
1743 1907 2.181975 CCAATGGAATCAGGCCTTTGT 58.818 47.619 0.00 0.00 38.31 2.83
1750 1916 3.367703 GGAATCAGGCCTTTGTGTCATTG 60.368 47.826 0.00 0.00 0.00 2.82
1751 1917 2.363306 TCAGGCCTTTGTGTCATTGT 57.637 45.000 0.00 0.00 0.00 2.71
1756 1922 4.699735 CAGGCCTTTGTGTCATTGTACATA 59.300 41.667 0.00 0.00 0.00 2.29
1757 1923 5.182950 CAGGCCTTTGTGTCATTGTACATAA 59.817 40.000 0.00 0.00 0.00 1.90
1782 1948 3.118454 CAGGTTAGCGGCACCACG 61.118 66.667 11.55 0.00 36.67 4.94
1977 2143 7.696992 TCCATACCTTTTTGTTTCATACTCC 57.303 36.000 0.00 0.00 0.00 3.85
1978 2144 6.373216 TCCATACCTTTTTGTTTCATACTCCG 59.627 38.462 0.00 0.00 0.00 4.63
2009 2175 8.150827 AGCTAATATGGTCCTAGAATAATGCA 57.849 34.615 0.00 0.00 0.00 3.96
2010 2176 8.043710 AGCTAATATGGTCCTAGAATAATGCAC 58.956 37.037 0.00 0.00 0.00 4.57
2042 2208 5.352284 ACTAGTTTTGTGATCCTATGCTCG 58.648 41.667 0.00 0.00 0.00 5.03
2058 2238 2.034179 TGCTCGCTTGCGTATACAGTAT 59.966 45.455 14.70 0.00 35.36 2.12
2100 2284 5.296748 GCAGCACCTTTGGAAAAGAAATTA 58.703 37.500 1.31 0.00 0.00 1.40
2109 2293 9.599866 CCTTTGGAAAAGAAATTAGTTTCAGTT 57.400 29.630 12.61 6.14 44.92 3.16
2114 2298 9.894783 GGAAAAGAAATTAGTTTCAGTTAGGAC 57.105 33.333 12.61 1.64 44.92 3.85
2119 2303 7.719633 AGAAATTAGTTTCAGTTAGGACTTGCA 59.280 33.333 12.61 0.00 44.92 4.08
2132 2316 1.265365 GACTTGCAGTCAAACTGGCTC 59.735 52.381 9.01 0.00 46.01 4.70
2229 2414 5.959583 AAATTGACCAAACCCAGGTTTAA 57.040 34.783 14.27 6.15 45.32 1.52
2232 2417 4.946478 TGACCAAACCCAGGTTTAATTG 57.054 40.909 14.27 3.48 45.32 2.32
2236 2421 4.202172 ACCAAACCCAGGTTTAATTGAACG 60.202 41.667 14.27 0.45 45.32 3.95
2238 2423 5.452077 CCAAACCCAGGTTTAATTGAACGAA 60.452 40.000 14.27 0.00 45.32 3.85
2239 2424 6.220201 CAAACCCAGGTTTAATTGAACGAAT 58.780 36.000 14.27 0.00 45.32 3.34
2259 2444 6.070767 ACGAATAGAGATTTTGAGAGGTGGAA 60.071 38.462 0.00 0.00 0.00 3.53
2263 2448 5.885465 AGAGATTTTGAGAGGTGGAACAAT 58.115 37.500 0.00 0.00 44.16 2.71
2269 2454 4.365514 TGAGAGGTGGAACAATAAAGCA 57.634 40.909 0.00 0.00 44.16 3.91
2273 2458 3.826729 GAGGTGGAACAATAAAGCACCTT 59.173 43.478 0.00 0.00 44.16 3.50
2274 2459 4.223144 AGGTGGAACAATAAAGCACCTTT 58.777 39.130 0.00 0.00 44.16 3.11
2302 2487 9.561069 TCTCTGTTTCCCTATTTATATTTGAGC 57.439 33.333 0.00 0.00 0.00 4.26
2337 2522 7.766738 TCATAGTTCATAAATAGACGTTTGCCA 59.233 33.333 0.00 0.00 0.00 4.92
2339 2524 9.772973 ATAGTTCATAAATAGACGTTTGCCATA 57.227 29.630 0.00 0.00 0.00 2.74
2344 2529 8.147704 TCATAAATAGACGTTTGCCATAGATGA 58.852 33.333 0.00 0.00 0.00 2.92
2345 2530 8.939929 CATAAATAGACGTTTGCCATAGATGAT 58.060 33.333 0.00 0.00 0.00 2.45
2356 2541 7.591421 TTGCCATAGATGATTCATGATTGTT 57.409 32.000 3.32 0.00 0.00 2.83
2391 2576 6.473131 GCATTGCGATATTTTTCAGTCAATCA 59.527 34.615 0.00 0.00 0.00 2.57
2394 2579 8.984891 TTGCGATATTTTTCAGTCAATCAAAT 57.015 26.923 0.00 0.00 0.00 2.32
2395 2580 8.397215 TGCGATATTTTTCAGTCAATCAAATG 57.603 30.769 0.00 0.00 0.00 2.32
2396 2581 8.242739 TGCGATATTTTTCAGTCAATCAAATGA 58.757 29.630 0.00 0.00 0.00 2.57
2421 2607 7.985476 ACCATTATTAGTTCTTTGATTCACCG 58.015 34.615 0.00 0.00 0.00 4.94
2482 2669 0.105778 GCAGGGCAGTAGCTTCTAGG 59.894 60.000 0.00 0.00 41.70 3.02
2493 2680 6.487331 GCAGTAGCTTCTAGGTAGACTATTGA 59.513 42.308 0.00 0.00 37.91 2.57
2541 2731 6.961360 TGTACTGATGTATCTCCGAAGAAT 57.039 37.500 0.00 0.00 34.49 2.40
2545 2735 7.209471 ACTGATGTATCTCCGAAGAATACTC 57.791 40.000 0.00 0.00 34.49 2.59
2548 2738 7.597386 TGATGTATCTCCGAAGAATACTCATG 58.403 38.462 0.00 0.00 34.49 3.07
2551 2741 6.549736 TGTATCTCCGAAGAATACTCATGGAA 59.450 38.462 0.00 0.00 34.49 3.53
2552 2742 5.932619 TCTCCGAAGAATACTCATGGAAA 57.067 39.130 0.00 0.00 0.00 3.13
2555 2745 5.611374 TCCGAAGAATACTCATGGAAATCC 58.389 41.667 0.00 0.00 0.00 3.01
2810 3002 6.149474 TGAAAGGCTTATGCTTAGTTTCTGAC 59.851 38.462 0.00 0.00 39.59 3.51
2980 3172 1.678627 GATGCTGCTAGAGAGAACGGA 59.321 52.381 0.00 0.00 0.00 4.69
3055 3248 6.292923 TCTTTTCTTTCCCGTCTATTGAACA 58.707 36.000 0.00 0.00 0.00 3.18
3086 3279 4.394729 TCTGTAGTCATTTGGGTTGTTCC 58.605 43.478 0.00 0.00 0.00 3.62
3089 3282 0.386731 GTCATTTGGGTTGTTCCGCG 60.387 55.000 0.00 0.00 37.00 6.46
3145 3343 7.936496 TTGTATCAACAATGAATCAGCCTTA 57.064 32.000 0.00 0.00 40.69 2.69
3180 3379 9.985730 AGATTCATTTTCTGTTTATTTCTGCAA 57.014 25.926 0.00 0.00 0.00 4.08
3210 3409 0.596082 GCCGAAGCAGCCTTGTAAAA 59.404 50.000 0.00 0.00 39.53 1.52
3220 3419 4.754322 CAGCCTTGTAAAACCAACACTTT 58.246 39.130 0.00 0.00 0.00 2.66
3224 3423 5.062934 GCCTTGTAAAACCAACACTTTGAAC 59.937 40.000 0.00 0.00 34.24 3.18
3225 3424 6.159988 CCTTGTAAAACCAACACTTTGAACA 58.840 36.000 0.00 0.00 34.24 3.18
3226 3425 6.816140 CCTTGTAAAACCAACACTTTGAACAT 59.184 34.615 0.00 0.00 34.24 2.71
3229 3428 7.378966 TGTAAAACCAACACTTTGAACATGAA 58.621 30.769 0.00 0.00 34.24 2.57
3230 3429 6.720012 AAAACCAACACTTTGAACATGAAC 57.280 33.333 0.00 0.00 34.24 3.18
3237 3436 6.698008 ACACTTTGAACATGAACATTCAGA 57.302 33.333 0.00 0.00 41.08 3.27
3238 3437 6.732154 ACACTTTGAACATGAACATTCAGAG 58.268 36.000 0.00 6.26 40.88 3.35
3242 3441 3.503363 TGAACATGAACATTCAGAGTGCC 59.497 43.478 0.00 0.13 41.08 5.01
3243 3442 2.079158 ACATGAACATTCAGAGTGCCG 58.921 47.619 0.00 0.00 41.08 5.69
3244 3443 2.289631 ACATGAACATTCAGAGTGCCGA 60.290 45.455 0.00 0.00 41.08 5.54
3245 3444 2.768253 TGAACATTCAGAGTGCCGAT 57.232 45.000 0.00 0.00 32.50 4.18
3249 3448 3.057969 ACATTCAGAGTGCCGATTTGA 57.942 42.857 0.00 0.00 0.00 2.69
3272 3471 7.810658 TGAGCAAAATAACTGAGAAGAATCAC 58.189 34.615 0.00 0.00 0.00 3.06
3273 3472 7.445096 TGAGCAAAATAACTGAGAAGAATCACA 59.555 33.333 0.00 0.00 0.00 3.58
3280 3479 5.998454 ACTGAGAAGAATCACACACTTTG 57.002 39.130 0.00 0.00 0.00 2.77
3291 3490 1.134946 ACACACTTTGGCAGCTTCAAC 59.865 47.619 0.00 0.00 0.00 3.18
3352 3579 3.627123 TGGCATGTGAAATCCTGATTACG 59.373 43.478 0.00 0.00 0.00 3.18
3381 3611 7.951530 TCATATGTACACAGTAATGCATCTG 57.048 36.000 12.58 12.58 37.65 2.90
3399 3629 5.824429 CATCTGTGCTTGTTTTCTGAAAGA 58.176 37.500 2.75 0.00 44.68 2.52
3400 3630 6.444633 CATCTGTGCTTGTTTTCTGAAAGAT 58.555 36.000 2.75 0.00 46.36 2.40
3401 3631 7.587629 CATCTGTGCTTGTTTTCTGAAAGATA 58.412 34.615 2.75 0.00 46.36 1.98
3402 3632 7.194607 TCTGTGCTTGTTTTCTGAAAGATAG 57.805 36.000 2.75 3.64 46.36 2.08
3403 3633 6.205464 TCTGTGCTTGTTTTCTGAAAGATAGG 59.795 38.462 2.75 0.00 46.36 2.57
3404 3634 6.061441 TGTGCTTGTTTTCTGAAAGATAGGA 58.939 36.000 2.75 1.21 46.36 2.94
3405 3635 6.205464 TGTGCTTGTTTTCTGAAAGATAGGAG 59.795 38.462 2.75 0.00 46.36 3.69
3439 3669 8.995027 TGGTTTATATCATTTTGGTAGCTGAT 57.005 30.769 0.00 0.00 33.21 2.90
3448 3678 9.717942 ATCATTTTGGTAGCTGATAAGAGATAC 57.282 33.333 0.00 0.00 34.66 2.24
3450 3680 8.768955 CATTTTGGTAGCTGATAAGAGATACAC 58.231 37.037 0.00 0.00 36.70 2.90
3451 3681 6.406692 TTGGTAGCTGATAAGAGATACACC 57.593 41.667 0.00 0.00 36.70 4.16
3452 3682 5.454966 TGGTAGCTGATAAGAGATACACCA 58.545 41.667 0.00 0.00 36.70 4.17
3453 3683 5.536538 TGGTAGCTGATAAGAGATACACCAG 59.463 44.000 0.00 0.00 36.70 4.00
3486 3716 4.282496 ACACTGATTGGTCCCTAGACTAG 58.718 47.826 2.18 2.18 43.05 2.57
3492 3722 1.860240 TGGTCCCTAGACTAGGCTGAT 59.140 52.381 21.54 0.00 44.86 2.90
3523 3753 9.057089 ACCAAGCATTATTAGAGCAGTAATTAC 57.943 33.333 7.57 7.57 0.00 1.89
3561 3791 0.235926 GTCTTTCAGAGCAACACGCC 59.764 55.000 0.00 0.00 44.04 5.68
3562 3792 0.884704 TCTTTCAGAGCAACACGCCC 60.885 55.000 0.00 0.00 44.04 6.13
3584 3814 1.522668 AGCTTGCATAAACGTGCTGA 58.477 45.000 0.00 0.00 45.27 4.26
3598 3828 1.455217 GCTGATTGCAGGGAGGCAT 60.455 57.895 0.00 0.00 44.48 4.40
3600 3830 0.106868 CTGATTGCAGGGAGGCATCA 60.107 55.000 0.00 0.00 44.48 3.07
3601 3831 0.554305 TGATTGCAGGGAGGCATCAT 59.446 50.000 0.00 0.00 44.48 2.45
3653 3894 1.372997 CACACCGTCCTCTTGGTCG 60.373 63.158 0.00 0.00 42.85 4.79
3671 3912 3.434641 GGTCGCTGTCAATCATATCATGG 59.565 47.826 0.00 0.00 0.00 3.66
3675 3916 6.369890 GTCGCTGTCAATCATATCATGGTATT 59.630 38.462 0.00 0.00 0.00 1.89
3679 3920 8.355169 GCTGTCAATCATATCATGGTATTTGTT 58.645 33.333 9.28 0.00 0.00 2.83
3689 3930 9.803507 ATATCATGGTATTTGTTCATCATCTGT 57.196 29.630 0.00 0.00 0.00 3.41
3697 3938 9.229784 GTATTTGTTCATCATCTGTAGCAAATG 57.770 33.333 0.00 0.00 35.46 2.32
3735 3983 2.729028 AGGTGCCACATATGTTACCC 57.271 50.000 21.47 13.29 32.81 3.69
3736 3984 1.214424 AGGTGCCACATATGTTACCCC 59.786 52.381 21.47 12.04 32.81 4.95
3737 3985 1.687563 GTGCCACATATGTTACCCCC 58.312 55.000 5.37 0.00 0.00 5.40
3738 3986 1.214424 GTGCCACATATGTTACCCCCT 59.786 52.381 5.37 0.00 0.00 4.79
3739 3987 1.493022 TGCCACATATGTTACCCCCTC 59.507 52.381 5.37 0.00 0.00 4.30
3740 3988 1.202891 GCCACATATGTTACCCCCTCC 60.203 57.143 5.37 0.00 0.00 4.30
3741 3989 2.131854 CCACATATGTTACCCCCTCCA 58.868 52.381 5.37 0.00 0.00 3.86
3742 3990 2.512056 CCACATATGTTACCCCCTCCAA 59.488 50.000 5.37 0.00 0.00 3.53
3743 3991 3.140144 CCACATATGTTACCCCCTCCAAT 59.860 47.826 5.37 0.00 0.00 3.16
3744 3992 4.398319 CACATATGTTACCCCCTCCAATC 58.602 47.826 5.37 0.00 0.00 2.67
3745 3993 3.397955 ACATATGTTACCCCCTCCAATCC 59.602 47.826 1.41 0.00 0.00 3.01
3746 3994 1.994399 ATGTTACCCCCTCCAATCCA 58.006 50.000 0.00 0.00 0.00 3.41
3747 3995 1.761711 TGTTACCCCCTCCAATCCAA 58.238 50.000 0.00 0.00 0.00 3.53
3748 3996 2.074579 TGTTACCCCCTCCAATCCAAA 58.925 47.619 0.00 0.00 0.00 3.28
3749 3997 2.657459 TGTTACCCCCTCCAATCCAAAT 59.343 45.455 0.00 0.00 0.00 2.32
3750 3998 3.078305 TGTTACCCCCTCCAATCCAAATT 59.922 43.478 0.00 0.00 0.00 1.82
3751 3999 4.295238 TGTTACCCCCTCCAATCCAAATTA 59.705 41.667 0.00 0.00 0.00 1.40
3752 4000 5.222568 TGTTACCCCCTCCAATCCAAATTAA 60.223 40.000 0.00 0.00 0.00 1.40
3753 4001 4.642489 ACCCCCTCCAATCCAAATTAAT 57.358 40.909 0.00 0.00 0.00 1.40
3754 4002 4.971661 ACCCCCTCCAATCCAAATTAATT 58.028 39.130 0.00 0.00 0.00 1.40
3755 4003 4.721274 ACCCCCTCCAATCCAAATTAATTG 59.279 41.667 0.39 0.00 38.84 2.32
3756 4004 4.721274 CCCCCTCCAATCCAAATTAATTGT 59.279 41.667 0.39 0.00 37.32 2.71
3757 4005 5.163311 CCCCCTCCAATCCAAATTAATTGTC 60.163 44.000 0.39 0.00 37.32 3.18
3758 4006 5.451798 CCCCTCCAATCCAAATTAATTGTCG 60.452 44.000 0.39 0.00 37.32 4.35
3759 4007 5.043248 CCTCCAATCCAAATTAATTGTCGC 58.957 41.667 0.39 0.00 37.32 5.19
3760 4008 5.394005 CCTCCAATCCAAATTAATTGTCGCA 60.394 40.000 0.39 0.00 37.32 5.10
3761 4009 5.649557 TCCAATCCAAATTAATTGTCGCAG 58.350 37.500 0.39 0.00 37.32 5.18
3762 4010 4.268405 CCAATCCAAATTAATTGTCGCAGC 59.732 41.667 0.39 0.00 37.32 5.25
3763 4011 3.502191 TCCAAATTAATTGTCGCAGCC 57.498 42.857 0.39 0.00 37.32 4.85
3764 4012 2.822561 TCCAAATTAATTGTCGCAGCCA 59.177 40.909 0.39 0.00 37.32 4.75
3765 4013 3.446873 TCCAAATTAATTGTCGCAGCCAT 59.553 39.130 0.39 0.00 37.32 4.40
3766 4014 4.642437 TCCAAATTAATTGTCGCAGCCATA 59.358 37.500 0.39 0.00 37.32 2.74
3767 4015 4.977963 CCAAATTAATTGTCGCAGCCATAG 59.022 41.667 0.39 0.00 37.32 2.23
3768 4016 5.450412 CCAAATTAATTGTCGCAGCCATAGT 60.450 40.000 0.39 0.00 37.32 2.12
3769 4017 6.238621 CCAAATTAATTGTCGCAGCCATAGTA 60.239 38.462 0.39 0.00 37.32 1.82
3770 4018 5.924475 ATTAATTGTCGCAGCCATAGTAC 57.076 39.130 0.00 0.00 0.00 2.73
3771 4019 2.979814 ATTGTCGCAGCCATAGTACA 57.020 45.000 0.00 0.00 0.00 2.90
3772 4020 2.753055 TTGTCGCAGCCATAGTACAA 57.247 45.000 0.00 0.00 0.00 2.41
3773 4021 2.979814 TGTCGCAGCCATAGTACAAT 57.020 45.000 0.00 0.00 0.00 2.71
3774 4022 3.260475 TGTCGCAGCCATAGTACAATT 57.740 42.857 0.00 0.00 0.00 2.32
3775 4023 3.605634 TGTCGCAGCCATAGTACAATTT 58.394 40.909 0.00 0.00 0.00 1.82
3776 4024 4.006989 TGTCGCAGCCATAGTACAATTTT 58.993 39.130 0.00 0.00 0.00 1.82
3777 4025 4.142708 TGTCGCAGCCATAGTACAATTTTG 60.143 41.667 0.00 0.00 0.00 2.44
3778 4026 4.006989 TCGCAGCCATAGTACAATTTTGT 58.993 39.130 1.08 1.08 44.86 2.83
3779 4027 5.064198 GTCGCAGCCATAGTACAATTTTGTA 59.936 40.000 0.00 0.00 42.35 2.41
3780 4028 5.644206 TCGCAGCCATAGTACAATTTTGTAA 59.356 36.000 4.79 0.00 44.46 2.41
3781 4029 6.149640 TCGCAGCCATAGTACAATTTTGTAAA 59.850 34.615 4.79 0.00 44.46 2.01
3782 4030 6.804295 CGCAGCCATAGTACAATTTTGTAAAA 59.196 34.615 4.79 0.00 44.46 1.52
3783 4031 7.487829 CGCAGCCATAGTACAATTTTGTAAAAT 59.512 33.333 4.79 0.00 44.46 1.82
3784 4032 9.150348 GCAGCCATAGTACAATTTTGTAAAATT 57.850 29.630 8.99 8.99 46.42 1.82
3811 4059 9.768215 AATTTGAATTAAAGGGAGTATCTGGAA 57.232 29.630 0.00 0.00 33.73 3.53
3812 4060 9.942526 ATTTGAATTAAAGGGAGTATCTGGAAT 57.057 29.630 0.00 0.00 33.73 3.01
3856 4105 5.619132 AAATTGAGGAATAGGGCAAATGG 57.381 39.130 0.00 0.00 0.00 3.16
3952 4201 0.748450 ATGCGGGGCAAATGATCAAG 59.252 50.000 0.00 0.00 43.62 3.02
3953 4202 0.611618 TGCGGGGCAAATGATCAAGT 60.612 50.000 0.00 0.00 34.76 3.16
3954 4203 0.179129 GCGGGGCAAATGATCAAGTG 60.179 55.000 0.00 1.71 0.00 3.16
3955 4204 0.179129 CGGGGCAAATGATCAAGTGC 60.179 55.000 20.36 20.36 36.24 4.40
3959 4208 2.747396 GCAAATGATCAAGTGCCCAA 57.253 45.000 18.64 0.00 0.00 4.12
3960 4209 3.042871 GCAAATGATCAAGTGCCCAAA 57.957 42.857 18.64 0.00 0.00 3.28
3961 4210 3.602483 GCAAATGATCAAGTGCCCAAAT 58.398 40.909 18.64 0.00 0.00 2.32
3962 4211 4.757594 GCAAATGATCAAGTGCCCAAATA 58.242 39.130 18.64 0.00 0.00 1.40
3963 4212 5.177326 GCAAATGATCAAGTGCCCAAATAA 58.823 37.500 18.64 0.00 0.00 1.40
3964 4213 5.818857 GCAAATGATCAAGTGCCCAAATAAT 59.181 36.000 18.64 0.00 0.00 1.28
3965 4214 6.238266 GCAAATGATCAAGTGCCCAAATAATG 60.238 38.462 18.64 0.00 0.00 1.90
3966 4215 4.389890 TGATCAAGTGCCCAAATAATGC 57.610 40.909 0.00 0.00 0.00 3.56
3967 4216 2.937469 TCAAGTGCCCAAATAATGCG 57.063 45.000 0.00 0.00 0.00 4.73
3968 4217 1.476085 TCAAGTGCCCAAATAATGCGG 59.524 47.619 0.00 0.00 0.00 5.69
3980 4229 0.950836 TAATGCGGGGCAAATGATCG 59.049 50.000 0.00 0.00 43.62 3.69
3984 4233 0.040067 GCGGGGCAAATGATCGAATC 60.040 55.000 0.00 0.00 0.00 2.52
3989 4238 2.487986 GGGCAAATGATCGAATCTCCCT 60.488 50.000 0.00 0.00 0.00 4.20
3990 4239 3.217626 GGCAAATGATCGAATCTCCCTT 58.782 45.455 0.00 0.00 0.00 3.95
3992 4241 4.133078 GCAAATGATCGAATCTCCCTTCT 58.867 43.478 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
795 833 9.986833 GAACAAAAAGAAAAGCAAAATACACAT 57.013 25.926 0.00 0.00 0.00 3.21
860 901 3.071479 GCTGGACCGAATTACAGAAACA 58.929 45.455 0.00 0.00 32.86 2.83
861 902 3.071479 TGCTGGACCGAATTACAGAAAC 58.929 45.455 0.00 0.00 32.86 2.78
878 919 3.789858 CTGCGCTGCTGTCTGCTG 61.790 66.667 9.73 3.90 43.37 4.41
879 920 3.936204 CTCTGCGCTGCTGTCTGCT 62.936 63.158 9.73 0.00 43.37 4.24
880 921 3.488978 CTCTGCGCTGCTGTCTGC 61.489 66.667 9.73 0.00 43.25 4.26
881 922 3.488978 GCTCTGCGCTGCTGTCTG 61.489 66.667 9.73 0.00 35.14 3.51
882 923 3.936204 CTGCTCTGCGCTGCTGTCT 62.936 63.158 9.73 0.00 40.11 3.41
883 924 3.488978 CTGCTCTGCGCTGCTGTC 61.489 66.667 9.73 0.00 40.11 3.51
891 937 2.723010 CGTTTCTTTAAGCTGCTCTGCG 60.723 50.000 1.00 0.00 38.13 5.18
985 1031 4.824166 CATGGCTCACTTGCGCGC 62.824 66.667 27.26 27.26 0.00 6.86
986 1032 4.824166 GCATGGCTCACTTGCGCG 62.824 66.667 0.00 0.00 39.94 6.86
1140 1187 4.643387 GGCGTGGACACCTTGGCT 62.643 66.667 0.00 0.00 0.00 4.75
1227 1274 6.189859 TGAAAATACTGGATGCCAATCTTCT 58.810 36.000 0.00 0.00 30.80 2.85
1238 1285 7.038017 TGGAAGAGAGACTTGAAAATACTGGAT 60.038 37.037 0.00 0.00 39.13 3.41
1242 1289 7.120432 GCATTGGAAGAGAGACTTGAAAATACT 59.880 37.037 0.00 0.00 39.13 2.12
1243 1290 7.247019 GCATTGGAAGAGAGACTTGAAAATAC 58.753 38.462 0.00 0.00 39.13 1.89
1246 1293 4.214119 CGCATTGGAAGAGAGACTTGAAAA 59.786 41.667 0.00 0.00 39.13 2.29
1250 1297 1.396301 GCGCATTGGAAGAGAGACTTG 59.604 52.381 0.30 0.00 39.13 3.16
1300 1348 7.581814 TGAATTCCATAGAGAGAGAGAGAGAA 58.418 38.462 2.27 0.00 0.00 2.87
1301 1349 7.147958 TGAATTCCATAGAGAGAGAGAGAGA 57.852 40.000 2.27 0.00 0.00 3.10
1382 1430 5.483811 TCGAACATCCAAATGTAAGCTACA 58.516 37.500 0.00 0.00 45.48 2.74
1391 1439 3.788333 AGGCATTCGAACATCCAAATG 57.212 42.857 0.00 0.00 38.93 2.32
1394 1442 3.342377 TGTAGGCATTCGAACATCCAA 57.658 42.857 0.00 0.00 0.00 3.53
1395 1443 3.270027 CTTGTAGGCATTCGAACATCCA 58.730 45.455 0.00 0.00 0.00 3.41
1396 1444 2.032178 GCTTGTAGGCATTCGAACATCC 59.968 50.000 0.00 1.71 0.00 3.51
1402 1450 1.550524 AGACAGCTTGTAGGCATTCGA 59.449 47.619 0.00 0.00 34.17 3.71
1403 1451 1.662629 CAGACAGCTTGTAGGCATTCG 59.337 52.381 0.00 0.00 34.17 3.34
1407 1466 0.764890 AACCAGACAGCTTGTAGGCA 59.235 50.000 0.00 0.00 31.14 4.75
1409 1468 1.611673 CCCAACCAGACAGCTTGTAGG 60.612 57.143 0.00 0.00 33.40 3.18
1412 1471 1.529244 GCCCAACCAGACAGCTTGT 60.529 57.895 0.00 0.00 0.00 3.16
1417 1476 2.281761 AAGCGCCCAACCAGACAG 60.282 61.111 2.29 0.00 0.00 3.51
1431 1490 1.905922 GCGTCAACAGGAGCTCAAGC 61.906 60.000 17.19 3.77 42.49 4.01
1448 1515 1.940883 TAACTACGGGAGGCAGTGCG 61.941 60.000 9.45 0.00 30.90 5.34
1452 1519 3.329929 AAAACTAACTACGGGAGGCAG 57.670 47.619 0.00 0.00 0.00 4.85
1476 1559 5.449862 GCAGTCATTGGTTGAAACACTTGTA 60.450 40.000 0.00 0.00 35.70 2.41
1478 1561 3.798337 GCAGTCATTGGTTGAAACACTTG 59.202 43.478 0.00 0.00 35.70 3.16
1487 1570 0.599558 CCAGTGGCAGTCATTGGTTG 59.400 55.000 8.41 0.00 45.10 3.77
1488 1571 3.040965 CCAGTGGCAGTCATTGGTT 57.959 52.632 8.41 0.00 45.10 3.67
1518 1601 2.248374 ACCATGGCAACCCCCTGAT 61.248 57.895 13.04 0.00 31.44 2.90
1522 1605 3.991318 TCCACCATGGCAACCCCC 61.991 66.667 13.04 0.00 37.47 5.40
1526 1609 0.962356 CTCCTGTCCACCATGGCAAC 60.962 60.000 13.04 8.25 37.47 4.17
1531 1614 2.124983 CCGCTCCTGTCCACCATG 60.125 66.667 0.00 0.00 0.00 3.66
1537 1698 0.323957 AACTTAACCCGCTCCTGTCC 59.676 55.000 0.00 0.00 0.00 4.02
1540 1701 5.470047 AGATATAACTTAACCCGCTCCTG 57.530 43.478 0.00 0.00 0.00 3.86
1541 1702 6.552350 TGTAAGATATAACTTAACCCGCTCCT 59.448 38.462 4.20 0.00 34.74 3.69
1542 1703 6.752168 TGTAAGATATAACTTAACCCGCTCC 58.248 40.000 4.20 0.00 34.74 4.70
1575 1736 1.133790 CTGTGCCTAGCTTGCATTTCC 59.866 52.381 12.98 2.46 41.46 3.13
1576 1737 2.086869 TCTGTGCCTAGCTTGCATTTC 58.913 47.619 12.98 2.77 41.46 2.17
1578 1739 2.205022 TTCTGTGCCTAGCTTGCATT 57.795 45.000 12.98 0.00 41.46 3.56
1608 1770 3.243704 TGCATGCCCTTTTGTGTTTCTAC 60.244 43.478 16.68 0.00 0.00 2.59
1609 1771 2.961741 TGCATGCCCTTTTGTGTTTCTA 59.038 40.909 16.68 0.00 0.00 2.10
1611 1773 1.866601 GTGCATGCCCTTTTGTGTTTC 59.133 47.619 16.68 0.00 0.00 2.78
1615 1779 1.068895 TCAAGTGCATGCCCTTTTGTG 59.931 47.619 13.10 2.95 0.00 3.33
1617 1781 2.529780 TTCAAGTGCATGCCCTTTTG 57.470 45.000 13.10 12.36 0.00 2.44
1619 1783 3.775261 AAATTCAAGTGCATGCCCTTT 57.225 38.095 13.10 2.67 0.00 3.11
1621 1785 2.762327 CCTAAATTCAAGTGCATGCCCT 59.238 45.455 16.68 5.90 0.00 5.19
1622 1786 2.760092 TCCTAAATTCAAGTGCATGCCC 59.240 45.455 16.68 2.78 0.00 5.36
1623 1787 4.660789 ATCCTAAATTCAAGTGCATGCC 57.339 40.909 16.68 6.65 0.00 4.40
1628 1792 7.391148 TGGTTTCTATCCTAAATTCAAGTGC 57.609 36.000 0.00 0.00 0.00 4.40
1629 1793 9.231297 TCTTGGTTTCTATCCTAAATTCAAGTG 57.769 33.333 0.00 0.00 34.80 3.16
1630 1794 9.232473 GTCTTGGTTTCTATCCTAAATTCAAGT 57.768 33.333 0.00 0.00 34.80 3.16
1631 1795 9.231297 TGTCTTGGTTTCTATCCTAAATTCAAG 57.769 33.333 0.00 0.00 34.68 3.02
1632 1796 9.581289 TTGTCTTGGTTTCTATCCTAAATTCAA 57.419 29.630 0.00 0.00 0.00 2.69
1633 1797 9.581289 TTTGTCTTGGTTTCTATCCTAAATTCA 57.419 29.630 0.00 0.00 0.00 2.57
1640 1804 6.833933 ACTGTTTTTGTCTTGGTTTCTATCCT 59.166 34.615 0.00 0.00 0.00 3.24
1641 1805 7.039313 ACTGTTTTTGTCTTGGTTTCTATCC 57.961 36.000 0.00 0.00 0.00 2.59
1642 1806 8.926715 AAACTGTTTTTGTCTTGGTTTCTATC 57.073 30.769 0.00 0.00 0.00 2.08
1643 1807 8.527810 TGAAACTGTTTTTGTCTTGGTTTCTAT 58.472 29.630 7.28 0.00 40.56 1.98
1644 1808 7.887381 TGAAACTGTTTTTGTCTTGGTTTCTA 58.113 30.769 7.28 2.36 40.56 2.10
1645 1809 6.754193 TGAAACTGTTTTTGTCTTGGTTTCT 58.246 32.000 7.28 0.00 40.56 2.52
1649 1813 5.105756 CCTCTGAAACTGTTTTTGTCTTGGT 60.106 40.000 7.28 0.00 0.00 3.67
1651 1815 5.105756 ACCCTCTGAAACTGTTTTTGTCTTG 60.106 40.000 7.28 0.00 0.00 3.02
1653 1817 4.399303 CACCCTCTGAAACTGTTTTTGTCT 59.601 41.667 7.28 0.00 0.00 3.41
1654 1818 4.398044 TCACCCTCTGAAACTGTTTTTGTC 59.602 41.667 7.28 0.00 0.00 3.18
1655 1819 4.157840 GTCACCCTCTGAAACTGTTTTTGT 59.842 41.667 7.28 0.00 0.00 2.83
1656 1820 4.672409 GTCACCCTCTGAAACTGTTTTTG 58.328 43.478 7.28 3.99 0.00 2.44
1657 1821 3.377172 CGTCACCCTCTGAAACTGTTTTT 59.623 43.478 7.28 0.00 0.00 1.94
1660 1824 1.760613 TCGTCACCCTCTGAAACTGTT 59.239 47.619 0.00 0.00 0.00 3.16
1661 1825 1.410004 TCGTCACCCTCTGAAACTGT 58.590 50.000 0.00 0.00 0.00 3.55
1662 1826 2.526304 TTCGTCACCCTCTGAAACTG 57.474 50.000 0.00 0.00 0.00 3.16
1663 1827 2.289694 CCATTCGTCACCCTCTGAAACT 60.290 50.000 0.00 0.00 0.00 2.66
1665 1829 1.697432 ACCATTCGTCACCCTCTGAAA 59.303 47.619 0.00 0.00 0.00 2.69
1670 1834 0.535335 TAGCACCATTCGTCACCCTC 59.465 55.000 0.00 0.00 0.00 4.30
1702 1866 9.096160 CATTGGCAAAAACATAAGCATATACAA 57.904 29.630 3.01 0.00 0.00 2.41
1709 1873 4.613925 TCCATTGGCAAAAACATAAGCA 57.386 36.364 3.01 0.00 0.00 3.91
1719 1883 0.903942 GGCCTGATTCCATTGGCAAA 59.096 50.000 3.01 0.00 46.53 3.68
1723 1887 2.093869 CACAAAGGCCTGATTCCATTGG 60.094 50.000 5.69 0.00 36.81 3.16
1737 1901 8.055279 AGGAATTATGTACAATGACACAAAGG 57.945 34.615 0.00 0.00 30.52 3.11
1741 1905 8.628630 TGAAAGGAATTATGTACAATGACACA 57.371 30.769 0.00 0.00 30.52 3.72
1782 1948 1.220477 GCTGAGTCTTGGCCTCTCC 59.780 63.158 3.32 0.00 0.00 3.71
1952 2118 7.067008 CGGAGTATGAAACAAAAAGGTATGGAT 59.933 37.037 0.00 0.00 0.00 3.41
1954 2120 6.150474 ACGGAGTATGAAACAAAAAGGTATGG 59.850 38.462 0.00 0.00 41.94 2.74
1974 2140 7.171630 AGGACCATATTAGCTTAATACGGAG 57.828 40.000 12.15 0.00 36.38 4.63
1975 2141 8.111545 TCTAGGACCATATTAGCTTAATACGGA 58.888 37.037 12.15 0.00 36.38 4.69
1976 2142 8.289939 TCTAGGACCATATTAGCTTAATACGG 57.710 38.462 0.00 0.00 39.29 4.02
2004 2170 9.195411 CACAAAACTAGTTGATAAATGTGCATT 57.805 29.630 9.34 0.00 32.59 3.56
2005 2171 8.575589 TCACAAAACTAGTTGATAAATGTGCAT 58.424 29.630 9.34 0.00 36.49 3.96
2006 2172 7.935520 TCACAAAACTAGTTGATAAATGTGCA 58.064 30.769 9.34 6.12 36.49 4.57
2007 2173 8.970691 ATCACAAAACTAGTTGATAAATGTGC 57.029 30.769 9.34 0.00 36.49 4.57
2008 2174 9.559958 GGATCACAAAACTAGTTGATAAATGTG 57.440 33.333 9.34 15.76 37.55 3.21
2009 2175 9.520515 AGGATCACAAAACTAGTTGATAAATGT 57.479 29.630 9.34 5.42 32.59 2.71
2022 2188 2.939103 GCGAGCATAGGATCACAAAACT 59.061 45.455 0.00 0.00 0.00 2.66
2058 2238 5.712446 TGCTGCCAGTTAAAATGGTATACAA 59.288 36.000 5.01 0.00 40.17 2.41
2114 2298 1.534595 GAGAGCCAGTTTGACTGCAAG 59.465 52.381 2.59 0.00 44.63 4.01
2119 2303 7.782644 AGAGTATAATAGAGAGCCAGTTTGACT 59.217 37.037 0.00 0.00 0.00 3.41
2191 2375 9.672673 TTGGTCAATTTTTGGATGAAACTTTTA 57.327 25.926 0.00 0.00 0.00 1.52
2192 2376 8.572855 TTGGTCAATTTTTGGATGAAACTTTT 57.427 26.923 0.00 0.00 0.00 2.27
2196 2380 6.238621 GGGTTTGGTCAATTTTTGGATGAAAC 60.239 38.462 0.00 0.00 0.00 2.78
2229 2414 8.043710 ACCTCTCAAAATCTCTATTCGTTCAAT 58.956 33.333 0.00 0.00 0.00 2.57
2232 2417 6.256757 CCACCTCTCAAAATCTCTATTCGTTC 59.743 42.308 0.00 0.00 0.00 3.95
2236 2421 7.106239 TGTTCCACCTCTCAAAATCTCTATTC 58.894 38.462 0.00 0.00 0.00 1.75
2238 2423 6.627087 TGTTCCACCTCTCAAAATCTCTAT 57.373 37.500 0.00 0.00 0.00 1.98
2239 2424 6.433847 TTGTTCCACCTCTCAAAATCTCTA 57.566 37.500 0.00 0.00 0.00 2.43
2259 2444 5.625150 ACAGAGAGAAAGGTGCTTTATTGT 58.375 37.500 0.00 0.00 33.49 2.71
2263 2448 5.063880 GGAAACAGAGAGAAAGGTGCTTTA 58.936 41.667 0.00 0.00 33.49 1.85
2269 2454 6.455690 AAATAGGGAAACAGAGAGAAAGGT 57.544 37.500 0.00 0.00 0.00 3.50
2313 2498 8.677148 ATGGCAAACGTCTATTTATGAACTAT 57.323 30.769 0.00 0.00 0.00 2.12
2315 2500 7.985184 TCTATGGCAAACGTCTATTTATGAACT 59.015 33.333 0.00 0.00 0.00 3.01
2329 2514 5.678132 TCATGAATCATCTATGGCAAACG 57.322 39.130 0.00 0.00 0.00 3.60
2337 2522 9.692749 GCAATTGAACAATCATGAATCATCTAT 57.307 29.630 10.34 0.00 34.96 1.98
2339 2524 7.706607 CAGCAATTGAACAATCATGAATCATCT 59.293 33.333 10.34 0.00 34.96 2.90
2344 2529 4.873827 GCCAGCAATTGAACAATCATGAAT 59.126 37.500 10.34 0.00 34.96 2.57
2345 2530 4.247258 GCCAGCAATTGAACAATCATGAA 58.753 39.130 10.34 0.00 34.96 2.57
2356 2541 0.818938 ATCGCAATGCCAGCAATTGA 59.181 45.000 10.34 4.92 0.00 2.57
2394 2579 8.956426 GGTGAATCAAAGAACTAATAATGGTCA 58.044 33.333 0.00 0.00 0.00 4.02
2395 2580 8.122952 CGGTGAATCAAAGAACTAATAATGGTC 58.877 37.037 0.00 0.00 0.00 4.02
2396 2581 7.827236 TCGGTGAATCAAAGAACTAATAATGGT 59.173 33.333 0.00 0.00 0.00 3.55
2400 2585 7.274904 CGACTCGGTGAATCAAAGAACTAATAA 59.725 37.037 0.00 0.00 0.00 1.40
2402 2587 5.577164 CGACTCGGTGAATCAAAGAACTAAT 59.423 40.000 0.00 0.00 0.00 1.73
2413 2599 0.173708 AGGCTTCGACTCGGTGAATC 59.826 55.000 0.00 0.00 0.00 2.52
2416 2602 0.607217 TGTAGGCTTCGACTCGGTGA 60.607 55.000 0.00 0.00 0.00 4.02
2493 2680 6.139679 TGTTCCCTTGGATTATCAGAGTTT 57.860 37.500 0.00 0.00 0.00 2.66
2508 2695 7.200434 AGATACATCAGTACAATGTTCCCTT 57.800 36.000 16.22 1.75 38.31 3.95
2541 2731 2.766263 AGAGCACGGATTTCCATGAGTA 59.234 45.455 0.00 0.00 29.05 2.59
2545 2735 0.379669 GCAGAGCACGGATTTCCATG 59.620 55.000 0.00 0.00 35.14 3.66
2548 2738 4.301505 TGCAGAGCACGGATTTCC 57.698 55.556 0.00 0.00 31.71 3.13
2768 2960 8.409358 AGCCTTTCATTAAGAAACAACTACAT 57.591 30.769 0.00 0.00 41.17 2.29
2810 3002 1.136252 CACCGCAACATTGAACTCTCG 60.136 52.381 0.00 0.00 0.00 4.04
2826 3018 0.821711 TTCCTGGAAACCAAGCACCG 60.822 55.000 6.68 0.00 30.80 4.94
2980 3172 7.630242 TCAACAGAAAATTCAGAACTCAAGT 57.370 32.000 0.00 0.00 0.00 3.16
3055 3248 6.833933 ACCCAAATGACTACAGAAAGAACTTT 59.166 34.615 0.00 0.00 35.14 2.66
3089 3282 2.310538 CATTAAAGAGGGGCCATGTCC 58.689 52.381 4.39 0.00 0.00 4.02
3132 3330 6.189859 TCTTCCATTTGTAAGGCTGATTCAT 58.810 36.000 0.00 0.00 0.00 2.57
3169 3367 4.931002 GCAGAAGCCAAATTGCAGAAATAA 59.069 37.500 0.00 0.00 36.59 1.40
3194 3393 3.181480 TGTTGGTTTTACAAGGCTGCTTC 60.181 43.478 0.00 0.00 0.00 3.86
3196 3395 2.100749 GTGTTGGTTTTACAAGGCTGCT 59.899 45.455 0.00 0.00 0.00 4.24
3200 3399 4.749976 TCAAAGTGTTGGTTTTACAAGGC 58.250 39.130 0.00 0.00 35.29 4.35
3210 3409 5.596836 ATGTTCATGTTCAAAGTGTTGGT 57.403 34.783 0.00 0.00 35.29 3.67
3220 3419 3.503363 GGCACTCTGAATGTTCATGTTCA 59.497 43.478 0.00 0.00 36.46 3.18
3224 3423 2.349590 TCGGCACTCTGAATGTTCATG 58.650 47.619 0.00 0.00 36.46 3.07
3225 3424 2.768253 TCGGCACTCTGAATGTTCAT 57.232 45.000 0.00 0.00 36.46 2.57
3226 3425 2.768253 ATCGGCACTCTGAATGTTCA 57.232 45.000 0.00 0.00 35.57 3.18
3229 3428 3.005554 CTCAAATCGGCACTCTGAATGT 58.994 45.455 0.00 0.00 0.00 2.71
3230 3429 2.223203 GCTCAAATCGGCACTCTGAATG 60.223 50.000 0.00 0.00 0.00 2.67
3237 3436 4.218417 AGTTATTTTGCTCAAATCGGCACT 59.782 37.500 0.00 0.00 38.23 4.40
3238 3437 4.324402 CAGTTATTTTGCTCAAATCGGCAC 59.676 41.667 0.00 0.00 38.23 5.01
3242 3441 7.521529 TCTTCTCAGTTATTTTGCTCAAATCG 58.478 34.615 0.00 0.00 36.43 3.34
3243 3442 9.852091 ATTCTTCTCAGTTATTTTGCTCAAATC 57.148 29.630 0.00 0.00 36.43 2.17
3244 3443 9.852091 GATTCTTCTCAGTTATTTTGCTCAAAT 57.148 29.630 0.00 0.90 38.69 2.32
3245 3444 8.849168 TGATTCTTCTCAGTTATTTTGCTCAAA 58.151 29.630 0.00 0.00 0.00 2.69
3249 3448 7.229306 TGTGTGATTCTTCTCAGTTATTTTGCT 59.771 33.333 0.00 0.00 0.00 3.91
3272 3471 1.134753 TGTTGAAGCTGCCAAAGTGTG 59.865 47.619 0.00 0.00 0.00 3.82
3273 3472 1.134946 GTGTTGAAGCTGCCAAAGTGT 59.865 47.619 0.00 0.00 0.00 3.55
3280 3479 3.665190 AGTACTAAGTGTTGAAGCTGCC 58.335 45.455 0.00 0.00 0.00 4.85
3338 3565 9.003658 ACATATGAATTCCGTAATCAGGATTTC 57.996 33.333 10.38 10.98 43.25 2.17
3352 3579 8.153479 TGCATTACTGTGTACATATGAATTCC 57.847 34.615 10.38 0.00 0.00 3.01
3381 3611 6.205658 ACTCCTATCTTTCAGAAAACAAGCAC 59.794 38.462 0.00 0.00 0.00 4.40
3439 3669 7.931015 ATCCCAATTACTGGTGTATCTCTTA 57.069 36.000 0.00 0.00 44.76 2.10
3440 3670 6.831664 ATCCCAATTACTGGTGTATCTCTT 57.168 37.500 0.00 0.00 44.76 2.85
3442 3672 6.929606 GTGTATCCCAATTACTGGTGTATCTC 59.070 42.308 0.00 0.00 44.76 2.75
3443 3673 6.615726 AGTGTATCCCAATTACTGGTGTATCT 59.384 38.462 0.00 0.00 44.76 1.98
3444 3674 6.706270 CAGTGTATCCCAATTACTGGTGTATC 59.294 42.308 0.00 0.00 44.76 2.24
3445 3675 6.385759 TCAGTGTATCCCAATTACTGGTGTAT 59.614 38.462 0.00 0.00 44.76 2.29
3448 3678 5.097742 TCAGTGTATCCCAATTACTGGTG 57.902 43.478 0.00 0.00 44.76 4.17
3450 3680 5.532406 CCAATCAGTGTATCCCAATTACTGG 59.468 44.000 0.00 0.00 45.97 4.00
3451 3681 6.122277 ACCAATCAGTGTATCCCAATTACTG 58.878 40.000 0.00 0.00 39.95 2.74
3452 3682 6.327386 ACCAATCAGTGTATCCCAATTACT 57.673 37.500 0.00 0.00 0.00 2.24
3453 3683 5.531287 GGACCAATCAGTGTATCCCAATTAC 59.469 44.000 0.00 0.00 0.00 1.89
3486 3716 1.180029 ATGCTTGGTTGTCATCAGCC 58.820 50.000 0.00 0.00 43.74 4.85
3492 3722 5.252547 TGCTCTAATAATGCTTGGTTGTCA 58.747 37.500 0.00 0.00 0.00 3.58
3523 3753 2.132762 ACTAAAACTTCAGCGTCACCG 58.867 47.619 0.00 0.00 37.07 4.94
3543 3773 0.884704 GGGCGTGTTGCTCTGAAAGA 60.885 55.000 0.00 0.00 42.52 2.52
3561 3791 2.719798 GCACGTTTATGCAAGCTATGG 58.280 47.619 0.00 0.00 45.39 2.74
3584 3814 0.851469 AGATGATGCCTCCCTGCAAT 59.149 50.000 0.00 0.00 45.84 3.56
3590 3820 3.281727 TTGTAACAGATGATGCCTCCC 57.718 47.619 0.00 0.00 0.00 4.30
3636 3877 3.048602 CGACCAAGAGGACGGTGT 58.951 61.111 0.00 0.00 46.84 4.16
3653 3894 7.879070 ACAAATACCATGATATGATTGACAGC 58.121 34.615 0.00 0.00 0.00 4.40
3671 3912 9.229784 CATTTGCTACAGATGATGAACAAATAC 57.770 33.333 0.00 0.00 37.23 1.89
3675 3916 5.945191 TCCATTTGCTACAGATGATGAACAA 59.055 36.000 0.05 0.00 28.98 2.83
3679 3920 6.829849 TGTATCCATTTGCTACAGATGATGA 58.170 36.000 0.05 0.00 28.98 2.92
3689 3930 5.655974 TGCAATTCCTTGTATCCATTTGCTA 59.344 36.000 0.00 0.00 39.08 3.49
3697 3938 5.170748 CACCTTTTGCAATTCCTTGTATCC 58.829 41.667 0.00 0.00 34.69 2.59
3727 3975 1.994399 TGGATTGGAGGGGGTAACAT 58.006 50.000 0.00 0.00 39.74 2.71
3729 3977 2.911552 TTTGGATTGGAGGGGGTAAC 57.088 50.000 0.00 0.00 0.00 2.50
3733 3981 4.721274 ACAATTAATTTGGATTGGAGGGGG 59.279 41.667 0.00 0.00 39.80 5.40
3735 3983 5.591099 CGACAATTAATTTGGATTGGAGGG 58.409 41.667 0.00 0.00 39.80 4.30
3736 3984 5.043248 GCGACAATTAATTTGGATTGGAGG 58.957 41.667 0.00 0.00 39.80 4.30
3737 3985 5.649557 TGCGACAATTAATTTGGATTGGAG 58.350 37.500 0.00 7.25 39.80 3.86
3738 3986 5.649557 CTGCGACAATTAATTTGGATTGGA 58.350 37.500 0.00 0.00 39.80 3.53
3739 3987 4.268405 GCTGCGACAATTAATTTGGATTGG 59.732 41.667 0.00 0.00 39.80 3.16
3740 3988 4.268405 GGCTGCGACAATTAATTTGGATTG 59.732 41.667 0.00 7.11 39.80 2.67
3741 3989 4.081752 TGGCTGCGACAATTAATTTGGATT 60.082 37.500 0.00 0.00 39.80 3.01
3742 3990 3.446873 TGGCTGCGACAATTAATTTGGAT 59.553 39.130 0.00 0.00 39.80 3.41
3743 3991 2.822561 TGGCTGCGACAATTAATTTGGA 59.177 40.909 0.00 0.00 39.80 3.53
3744 3992 3.229276 TGGCTGCGACAATTAATTTGG 57.771 42.857 0.00 0.00 39.80 3.28
3745 3993 5.581605 ACTATGGCTGCGACAATTAATTTG 58.418 37.500 0.00 0.00 41.36 2.32
3746 3994 5.835113 ACTATGGCTGCGACAATTAATTT 57.165 34.783 0.00 0.00 0.00 1.82
3747 3995 5.820423 TGTACTATGGCTGCGACAATTAATT 59.180 36.000 0.00 0.00 0.00 1.40
3748 3996 5.364778 TGTACTATGGCTGCGACAATTAAT 58.635 37.500 0.00 0.00 0.00 1.40
3749 3997 4.760878 TGTACTATGGCTGCGACAATTAA 58.239 39.130 0.00 0.00 0.00 1.40
3750 3998 4.394439 TGTACTATGGCTGCGACAATTA 57.606 40.909 0.00 0.00 0.00 1.40
3751 3999 3.260475 TGTACTATGGCTGCGACAATT 57.740 42.857 0.00 0.00 0.00 2.32
3752 4000 2.979814 TGTACTATGGCTGCGACAAT 57.020 45.000 0.00 0.00 0.00 2.71
3753 4001 2.753055 TTGTACTATGGCTGCGACAA 57.247 45.000 0.00 0.00 0.00 3.18
3754 4002 2.979814 ATTGTACTATGGCTGCGACA 57.020 45.000 0.00 0.00 0.00 4.35
3755 4003 4.142687 ACAAAATTGTACTATGGCTGCGAC 60.143 41.667 0.00 0.00 40.16 5.19
3756 4004 4.006989 ACAAAATTGTACTATGGCTGCGA 58.993 39.130 0.00 0.00 40.16 5.10
3757 4005 4.355543 ACAAAATTGTACTATGGCTGCG 57.644 40.909 0.00 0.00 40.16 5.18
3758 4006 8.702163 ATTTTACAAAATTGTACTATGGCTGC 57.298 30.769 5.53 0.00 42.84 5.25
3785 4033 9.768215 TTCCAGATACTCCCTTTAATTCAAATT 57.232 29.630 0.00 0.00 0.00 1.82
3786 4034 9.942526 ATTCCAGATACTCCCTTTAATTCAAAT 57.057 29.630 0.00 0.00 0.00 2.32
3856 4105 5.931724 CCCCATTTTACTTGGATTTGTTGAC 59.068 40.000 0.00 0.00 36.26 3.18
3908 4157 3.173953 TGGGGACTTGATCATTTGCTT 57.826 42.857 0.00 0.00 0.00 3.91
3952 4201 1.441311 CCCCGCATTATTTGGGCAC 59.559 57.895 0.00 0.00 41.88 5.01
3953 4202 3.947173 CCCCGCATTATTTGGGCA 58.053 55.556 0.00 0.00 41.88 5.36
3955 4204 0.539051 TTTGCCCCGCATTATTTGGG 59.461 50.000 0.00 0.00 38.76 4.12
3956 4205 2.158986 TCATTTGCCCCGCATTATTTGG 60.159 45.455 0.00 0.00 38.76 3.28
3957 4206 3.176552 TCATTTGCCCCGCATTATTTG 57.823 42.857 0.00 0.00 38.76 2.32
3958 4207 3.552684 CGATCATTTGCCCCGCATTATTT 60.553 43.478 0.00 0.00 38.76 1.40
3959 4208 2.030007 CGATCATTTGCCCCGCATTATT 60.030 45.455 0.00 0.00 38.76 1.40
3960 4209 1.541147 CGATCATTTGCCCCGCATTAT 59.459 47.619 0.00 0.00 38.76 1.28
3961 4210 0.950836 CGATCATTTGCCCCGCATTA 59.049 50.000 0.00 0.00 38.76 1.90
3962 4211 0.751277 TCGATCATTTGCCCCGCATT 60.751 50.000 0.00 0.00 38.76 3.56
3963 4212 0.751277 TTCGATCATTTGCCCCGCAT 60.751 50.000 0.00 0.00 38.76 4.73
3964 4213 0.751277 ATTCGATCATTTGCCCCGCA 60.751 50.000 0.00 0.00 36.47 5.69
3965 4214 0.040067 GATTCGATCATTTGCCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
3966 4215 1.532868 GAGATTCGATCATTTGCCCCG 59.467 52.381 0.00 0.00 0.00 5.73
3967 4216 1.882623 GGAGATTCGATCATTTGCCCC 59.117 52.381 0.00 0.00 0.00 5.80
3968 4217 1.882623 GGGAGATTCGATCATTTGCCC 59.117 52.381 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.