Multiple sequence alignment - TraesCS5B01G503400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G503400 chr5B 100.000 3208 0 0 1 3208 670021322 670018115 0.000000e+00 5925
1 TraesCS5B01G503400 chr5B 91.360 1007 65 8 2217 3208 548380448 548381447 0.000000e+00 1358
2 TraesCS5B01G503400 chr5B 91.434 969 58 12 2215 3168 640752607 640751649 0.000000e+00 1306
3 TraesCS5B01G503400 chr5B 93.851 309 18 1 1540 1847 496093526 496093834 6.270000e-127 464
4 TraesCS5B01G503400 chr6B 92.354 1007 59 12 2217 3208 127027906 127026903 0.000000e+00 1417
5 TraesCS5B01G503400 chr6B 91.956 1007 58 15 2217 3208 638215648 638214650 0.000000e+00 1389
6 TraesCS5B01G503400 chr6B 91.691 1011 62 6 2213 3208 6827055 6828058 0.000000e+00 1382
7 TraesCS5B01G503400 chr6B 93.137 306 18 2 1543 1845 511571747 511571442 2.270000e-121 446
8 TraesCS5B01G503400 chr5D 87.181 1334 62 27 266 1532 530776737 530775446 0.000000e+00 1415
9 TraesCS5B01G503400 chr5D 89.062 1024 61 21 2215 3208 286161785 286162787 0.000000e+00 1223
10 TraesCS5B01G503400 chr5D 85.600 375 22 17 1846 2198 530775444 530775080 6.540000e-97 364
11 TraesCS5B01G503400 chr5D 81.592 201 32 4 13 212 502198508 502198704 9.210000e-36 161
12 TraesCS5B01G503400 chr3A 92.277 1010 54 10 2215 3208 65353409 65352408 0.000000e+00 1411
13 TraesCS5B01G503400 chr3A 94.822 309 16 0 1541 1849 20552996 20552688 1.730000e-132 483
14 TraesCS5B01G503400 chr3B 91.964 1008 57 10 2217 3208 752698430 752699429 0.000000e+00 1391
15 TraesCS5B01G503400 chr3B 94.137 307 16 2 1543 1847 591537682 591537376 1.740000e-127 466
16 TraesCS5B01G503400 chr3B 92.834 307 20 1 1543 1847 506327041 506326735 8.170000e-121 444
17 TraesCS5B01G503400 chr3B 78.400 250 46 7 1 246 823298965 823298720 4.280000e-34 156
18 TraesCS5B01G503400 chr1D 91.766 1008 53 15 2217 3208 492903978 492904971 0.000000e+00 1375
19 TraesCS5B01G503400 chr2B 91.037 993 68 12 2224 3208 78421762 78420783 0.000000e+00 1321
20 TraesCS5B01G503400 chr2B 82.199 191 26 8 13 200 620822523 620822338 1.190000e-34 158
21 TraesCS5B01G503400 chr2B 88.298 94 11 0 1 94 26948548 26948641 2.620000e-21 113
22 TraesCS5B01G503400 chr2D 89.672 1036 70 18 2200 3208 607089216 607090241 0.000000e+00 1286
23 TraesCS5B01G503400 chr7B 90.050 995 79 14 2217 3208 619780719 619779742 0.000000e+00 1271
24 TraesCS5B01G503400 chr7A 88.997 1027 70 17 2214 3208 82172809 82173824 0.000000e+00 1230
25 TraesCS5B01G503400 chr7A 75.904 249 48 9 1 243 511057830 511058072 2.020000e-22 117
26 TraesCS5B01G503400 chr6D 88.966 1015 58 21 2215 3208 428661245 428662226 0.000000e+00 1205
27 TraesCS5B01G503400 chr5A 88.377 998 95 12 2217 3208 364202560 364203542 0.000000e+00 1181
28 TraesCS5B01G503400 chr1B 96.393 305 11 0 1543 1847 678849287 678849591 1.330000e-138 503
29 TraesCS5B01G503400 chr4B 92.628 312 22 1 1537 1847 98328097 98328408 6.310000e-122 448
30 TraesCS5B01G503400 chr4B 92.308 312 21 3 1537 1847 546236116 546235807 1.060000e-119 440
31 TraesCS5B01G503400 chr4B 83.265 245 30 9 1 242 379615744 379615508 6.970000e-52 215
32 TraesCS5B01G503400 chr1A 92.283 311 22 2 1541 1849 212015816 212016126 1.060000e-119 440
33 TraesCS5B01G503400 chr4A 88.387 310 16 4 1215 1510 641480883 641481186 3.940000e-94 355
34 TraesCS5B01G503400 chr4A 82.946 387 21 20 1847 2198 641481211 641481587 1.120000e-79 307
35 TraesCS5B01G503400 chr4A 86.093 151 13 7 335 478 641479914 641480063 4.280000e-34 156
36 TraesCS5B01G503400 chr3D 81.323 257 33 8 1 246 609901439 609901187 9.080000e-46 195
37 TraesCS5B01G503400 chr7D 80.408 245 37 9 1 243 427902201 427901966 3.290000e-40 176
38 TraesCS5B01G503400 chr7D 77.404 208 36 9 12 213 593403253 593403051 2.620000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G503400 chr5B 670018115 670021322 3207 True 5925.000000 5925 100.000000 1 3208 1 chr5B.!!$R2 3207
1 TraesCS5B01G503400 chr5B 548380448 548381447 999 False 1358.000000 1358 91.360000 2217 3208 1 chr5B.!!$F2 991
2 TraesCS5B01G503400 chr5B 640751649 640752607 958 True 1306.000000 1306 91.434000 2215 3168 1 chr5B.!!$R1 953
3 TraesCS5B01G503400 chr6B 127026903 127027906 1003 True 1417.000000 1417 92.354000 2217 3208 1 chr6B.!!$R1 991
4 TraesCS5B01G503400 chr6B 638214650 638215648 998 True 1389.000000 1389 91.956000 2217 3208 1 chr6B.!!$R3 991
5 TraesCS5B01G503400 chr6B 6827055 6828058 1003 False 1382.000000 1382 91.691000 2213 3208 1 chr6B.!!$F1 995
6 TraesCS5B01G503400 chr5D 286161785 286162787 1002 False 1223.000000 1223 89.062000 2215 3208 1 chr5D.!!$F1 993
7 TraesCS5B01G503400 chr5D 530775080 530776737 1657 True 889.500000 1415 86.390500 266 2198 2 chr5D.!!$R1 1932
8 TraesCS5B01G503400 chr3A 65352408 65353409 1001 True 1411.000000 1411 92.277000 2215 3208 1 chr3A.!!$R2 993
9 TraesCS5B01G503400 chr3B 752698430 752699429 999 False 1391.000000 1391 91.964000 2217 3208 1 chr3B.!!$F1 991
10 TraesCS5B01G503400 chr1D 492903978 492904971 993 False 1375.000000 1375 91.766000 2217 3208 1 chr1D.!!$F1 991
11 TraesCS5B01G503400 chr2B 78420783 78421762 979 True 1321.000000 1321 91.037000 2224 3208 1 chr2B.!!$R1 984
12 TraesCS5B01G503400 chr2D 607089216 607090241 1025 False 1286.000000 1286 89.672000 2200 3208 1 chr2D.!!$F1 1008
13 TraesCS5B01G503400 chr7B 619779742 619780719 977 True 1271.000000 1271 90.050000 2217 3208 1 chr7B.!!$R1 991
14 TraesCS5B01G503400 chr7A 82172809 82173824 1015 False 1230.000000 1230 88.997000 2214 3208 1 chr7A.!!$F1 994
15 TraesCS5B01G503400 chr6D 428661245 428662226 981 False 1205.000000 1205 88.966000 2215 3208 1 chr6D.!!$F1 993
16 TraesCS5B01G503400 chr5A 364202560 364203542 982 False 1181.000000 1181 88.377000 2217 3208 1 chr5A.!!$F1 991
17 TraesCS5B01G503400 chr4A 641479914 641481587 1673 False 272.666667 355 85.808667 335 2198 3 chr4A.!!$F1 1863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.034186 CTAATGCCTGCACCTGGGAA 60.034 55.0 0.0 0.0 0.00 3.97 F
516 529 0.449388 GCAGATTTGTTCCGAGCTGG 59.551 55.0 0.0 0.0 40.09 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 2169 0.387565 CCCACCGACCCAAAACAAAG 59.612 55.0 0.0 0.0 0.0 2.77 R
2446 2832 0.402121 AGAGAGGGTTGAAGGGTTGC 59.598 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.212450 GAGGTGTTCCAAGGACGAC 57.788 57.895 0.00 0.00 35.89 4.34
19 20 0.666577 GAGGTGTTCCAAGGACGACG 60.667 60.000 0.00 0.00 35.89 5.12
20 21 1.111116 AGGTGTTCCAAGGACGACGA 61.111 55.000 0.00 0.00 35.89 4.20
21 22 0.666577 GGTGTTCCAAGGACGACGAG 60.667 60.000 0.00 0.00 0.00 4.18
22 23 0.666577 GTGTTCCAAGGACGACGAGG 60.667 60.000 0.00 0.00 0.00 4.63
23 24 1.737008 GTTCCAAGGACGACGAGGC 60.737 63.158 0.00 0.00 0.00 4.70
24 25 3.277211 TTCCAAGGACGACGAGGCG 62.277 63.158 0.00 0.00 37.29 5.52
58 59 3.431725 CGGGCCTGCGGTTCTTTC 61.432 66.667 0.84 0.00 0.00 2.62
59 60 2.282180 GGGCCTGCGGTTCTTTCA 60.282 61.111 0.84 0.00 0.00 2.69
60 61 2.626780 GGGCCTGCGGTTCTTTCAC 61.627 63.158 0.84 0.00 0.00 3.18
61 62 2.556287 GCCTGCGGTTCTTTCACG 59.444 61.111 0.00 0.00 0.00 4.35
65 66 3.027292 GCGGTTCTTTCACGCCAA 58.973 55.556 0.00 0.00 46.92 4.52
66 67 1.357334 GCGGTTCTTTCACGCCAAA 59.643 52.632 0.00 0.00 46.92 3.28
67 68 0.248702 GCGGTTCTTTCACGCCAAAA 60.249 50.000 0.00 0.00 46.92 2.44
68 69 1.601914 GCGGTTCTTTCACGCCAAAAT 60.602 47.619 0.00 0.00 46.92 1.82
69 70 2.315901 CGGTTCTTTCACGCCAAAATC 58.684 47.619 0.00 0.00 0.00 2.17
70 71 2.315901 GGTTCTTTCACGCCAAAATCG 58.684 47.619 0.00 0.00 0.00 3.34
71 72 1.713932 GTTCTTTCACGCCAAAATCGC 59.286 47.619 0.00 0.00 0.00 4.58
72 73 1.234821 TCTTTCACGCCAAAATCGCT 58.765 45.000 0.00 0.00 0.00 4.93
73 74 1.196808 TCTTTCACGCCAAAATCGCTC 59.803 47.619 0.00 0.00 0.00 5.03
74 75 0.110419 TTTCACGCCAAAATCGCTCG 60.110 50.000 0.00 0.00 0.00 5.03
75 76 2.507322 TTCACGCCAAAATCGCTCGC 62.507 55.000 0.00 0.00 0.00 5.03
76 77 3.799755 ACGCCAAAATCGCTCGCC 61.800 61.111 0.00 0.00 0.00 5.54
77 78 4.536687 CGCCAAAATCGCTCGCCC 62.537 66.667 0.00 0.00 0.00 6.13
78 79 4.193334 GCCAAAATCGCTCGCCCC 62.193 66.667 0.00 0.00 0.00 5.80
79 80 2.749839 CCAAAATCGCTCGCCCCA 60.750 61.111 0.00 0.00 0.00 4.96
80 81 2.764314 CCAAAATCGCTCGCCCCAG 61.764 63.158 0.00 0.00 0.00 4.45
81 82 3.134127 AAAATCGCTCGCCCCAGC 61.134 61.111 0.00 0.00 35.90 4.85
103 104 4.263572 CCCAGCACACCGGGTTCA 62.264 66.667 6.32 0.00 37.70 3.18
104 105 2.203280 CCAGCACACCGGGTTCAA 60.203 61.111 6.32 0.00 0.00 2.69
105 106 2.551912 CCAGCACACCGGGTTCAAC 61.552 63.158 6.32 0.00 0.00 3.18
106 107 2.203294 AGCACACCGGGTTCAACC 60.203 61.111 6.32 0.00 37.60 3.77
107 108 2.203294 GCACACCGGGTTCAACCT 60.203 61.111 6.51 0.00 38.64 3.50
108 109 2.551912 GCACACCGGGTTCAACCTG 61.552 63.158 8.66 8.66 44.36 4.00
113 114 2.033602 CGGGTTCAACCTGGGTCC 59.966 66.667 7.63 0.00 41.01 4.46
114 115 2.033602 GGGTTCAACCTGGGTCCG 59.966 66.667 6.51 0.00 38.64 4.79
115 116 2.671963 GGTTCAACCTGGGTCCGC 60.672 66.667 0.00 0.00 34.73 5.54
116 117 2.671963 GTTCAACCTGGGTCCGCC 60.672 66.667 0.00 0.00 0.00 6.13
117 118 4.323477 TTCAACCTGGGTCCGCCG 62.323 66.667 0.00 0.00 34.97 6.46
127 128 3.199891 GTCCGCCGGCGCTAATTT 61.200 61.111 42.39 0.00 38.24 1.82
128 129 2.893404 TCCGCCGGCGCTAATTTC 60.893 61.111 42.39 0.75 38.24 2.17
129 130 4.293626 CCGCCGGCGCTAATTTCG 62.294 66.667 42.39 22.74 38.24 3.46
135 136 3.192796 GCGCTAATTTCGCCCCAA 58.807 55.556 0.00 0.00 46.18 4.12
136 137 1.509004 GCGCTAATTTCGCCCCAAA 59.491 52.632 0.00 0.00 46.18 3.28
137 138 0.800683 GCGCTAATTTCGCCCCAAAC 60.801 55.000 0.00 0.00 46.18 2.93
138 139 0.179148 CGCTAATTTCGCCCCAAACC 60.179 55.000 0.00 0.00 0.00 3.27
139 140 0.179148 GCTAATTTCGCCCCAAACCG 60.179 55.000 0.00 0.00 0.00 4.44
140 141 0.454196 CTAATTTCGCCCCAAACCGG 59.546 55.000 0.00 0.00 0.00 5.28
141 142 1.596895 TAATTTCGCCCCAAACCGGC 61.597 55.000 0.00 0.00 43.38 6.13
146 147 3.607661 GCCCCAAACCGGCGAAAA 61.608 61.111 9.30 0.00 36.47 2.29
147 148 3.130227 CCCCAAACCGGCGAAAAA 58.870 55.556 9.30 0.00 0.00 1.94
164 165 1.977056 AAAAACAGACTTCCGGGGAC 58.023 50.000 0.00 0.00 0.00 4.46
176 177 2.657237 GGGGACGTGACTGGACTG 59.343 66.667 0.00 0.00 0.00 3.51
177 178 2.207924 GGGGACGTGACTGGACTGT 61.208 63.158 0.00 0.00 0.00 3.55
178 179 1.746517 GGGACGTGACTGGACTGTT 59.253 57.895 0.00 0.00 0.00 3.16
179 180 0.106149 GGGACGTGACTGGACTGTTT 59.894 55.000 0.00 0.00 0.00 2.83
180 181 1.474498 GGGACGTGACTGGACTGTTTT 60.474 52.381 0.00 0.00 0.00 2.43
181 182 2.285977 GGACGTGACTGGACTGTTTTT 58.714 47.619 0.00 0.00 0.00 1.94
182 183 2.287103 GGACGTGACTGGACTGTTTTTC 59.713 50.000 0.00 0.00 0.00 2.29
183 184 1.931172 ACGTGACTGGACTGTTTTTCG 59.069 47.619 0.00 0.00 0.00 3.46
184 185 1.260561 CGTGACTGGACTGTTTTTCGG 59.739 52.381 0.00 0.00 0.00 4.30
185 186 1.002792 GTGACTGGACTGTTTTTCGGC 60.003 52.381 0.00 0.00 0.00 5.54
186 187 0.234884 GACTGGACTGTTTTTCGGCG 59.765 55.000 0.00 0.00 0.00 6.46
187 188 1.082104 CTGGACTGTTTTTCGGCGC 60.082 57.895 0.00 0.00 0.00 6.53
188 189 2.254350 GGACTGTTTTTCGGCGCC 59.746 61.111 19.07 19.07 0.00 6.53
189 190 2.127383 GACTGTTTTTCGGCGCCG 60.127 61.111 42.13 42.13 41.35 6.46
190 191 3.588891 GACTGTTTTTCGGCGCCGG 62.589 63.158 44.95 30.01 40.25 6.13
221 222 3.056628 GTCTGAGAGGACGCATTGG 57.943 57.895 0.00 0.00 0.00 3.16
222 223 0.460987 GTCTGAGAGGACGCATTGGG 60.461 60.000 0.00 0.00 0.00 4.12
223 224 0.614697 TCTGAGAGGACGCATTGGGA 60.615 55.000 7.82 0.00 0.00 4.37
224 225 0.179089 CTGAGAGGACGCATTGGGAG 60.179 60.000 7.82 0.00 0.00 4.30
225 226 0.904865 TGAGAGGACGCATTGGGAGT 60.905 55.000 7.82 0.00 0.00 3.85
226 227 1.112113 GAGAGGACGCATTGGGAGTA 58.888 55.000 7.82 0.00 0.00 2.59
227 228 1.689273 GAGAGGACGCATTGGGAGTAT 59.311 52.381 7.82 0.00 0.00 2.12
228 229 1.414181 AGAGGACGCATTGGGAGTATG 59.586 52.381 7.82 0.00 0.00 2.39
229 230 0.469917 AGGACGCATTGGGAGTATGG 59.530 55.000 7.82 0.00 0.00 2.74
230 231 1.166531 GGACGCATTGGGAGTATGGC 61.167 60.000 7.82 0.00 0.00 4.40
231 232 0.179045 GACGCATTGGGAGTATGGCT 60.179 55.000 7.82 0.00 0.00 4.75
232 233 0.464373 ACGCATTGGGAGTATGGCTG 60.464 55.000 7.82 0.00 0.00 4.85
233 234 1.168407 CGCATTGGGAGTATGGCTGG 61.168 60.000 0.00 0.00 0.00 4.85
234 235 0.183492 GCATTGGGAGTATGGCTGGA 59.817 55.000 0.00 0.00 0.00 3.86
235 236 1.816961 GCATTGGGAGTATGGCTGGAG 60.817 57.143 0.00 0.00 0.00 3.86
236 237 1.770658 CATTGGGAGTATGGCTGGAGA 59.229 52.381 0.00 0.00 0.00 3.71
237 238 2.196742 TTGGGAGTATGGCTGGAGAT 57.803 50.000 0.00 0.00 0.00 2.75
238 239 1.427809 TGGGAGTATGGCTGGAGATG 58.572 55.000 0.00 0.00 0.00 2.90
239 240 0.036022 GGGAGTATGGCTGGAGATGC 59.964 60.000 0.00 0.00 0.00 3.91
240 241 1.055040 GGAGTATGGCTGGAGATGCT 58.945 55.000 0.00 0.00 0.00 3.79
241 242 1.001860 GGAGTATGGCTGGAGATGCTC 59.998 57.143 0.00 0.00 32.29 4.26
242 243 1.969923 GAGTATGGCTGGAGATGCTCT 59.030 52.381 0.00 0.00 30.90 4.09
243 244 1.693062 AGTATGGCTGGAGATGCTCTG 59.307 52.381 0.00 0.00 0.00 3.35
244 245 1.690893 GTATGGCTGGAGATGCTCTGA 59.309 52.381 0.00 0.00 0.00 3.27
245 246 0.759959 ATGGCTGGAGATGCTCTGAG 59.240 55.000 0.00 0.00 0.00 3.35
246 247 1.227615 GGCTGGAGATGCTCTGAGC 60.228 63.158 22.38 22.38 42.82 4.26
255 256 4.100981 GCTCTGAGCACGATGGTC 57.899 61.111 24.02 9.35 44.54 4.02
256 257 1.520342 GCTCTGAGCACGATGGTCC 60.520 63.158 24.02 0.00 43.72 4.46
257 258 1.226802 CTCTGAGCACGATGGTCCG 60.227 63.158 12.45 7.97 43.72 4.79
258 259 2.887568 CTGAGCACGATGGTCCGC 60.888 66.667 12.45 0.00 43.72 5.54
259 260 4.451150 TGAGCACGATGGTCCGCC 62.451 66.667 12.45 0.00 43.72 6.13
260 261 4.148825 GAGCACGATGGTCCGCCT 62.149 66.667 0.00 0.00 38.84 5.52
261 262 3.665675 GAGCACGATGGTCCGCCTT 62.666 63.158 0.00 0.00 38.84 4.35
262 263 3.195698 GCACGATGGTCCGCCTTC 61.196 66.667 0.00 0.00 36.06 3.46
263 264 2.579201 CACGATGGTCCGCCTTCT 59.421 61.111 0.00 0.00 36.94 2.85
264 265 1.813859 CACGATGGTCCGCCTTCTA 59.186 57.895 0.00 0.00 36.94 2.10
269 270 0.179018 ATGGTCCGCCTTCTAATGCC 60.179 55.000 0.00 0.00 35.27 4.40
281 282 0.034186 CTAATGCCTGCACCTGGGAA 60.034 55.000 0.00 0.00 0.00 3.97
284 285 1.792757 ATGCCTGCACCTGGGAAGAA 61.793 55.000 0.00 0.00 0.00 2.52
292 293 3.718434 TGCACCTGGGAAGAAGATGATAT 59.282 43.478 0.00 0.00 0.00 1.63
304 305 9.393512 GGAAGAAGATGATATGATAAGAATGGG 57.606 37.037 0.00 0.00 0.00 4.00
306 307 7.344913 AGAAGATGATATGATAAGAATGGGCC 58.655 38.462 0.00 0.00 0.00 5.80
310 311 5.951204 TGATATGATAAGAATGGGCCACAA 58.049 37.500 9.28 0.00 0.00 3.33
318 319 1.272212 GAATGGGCCACAACGAATGTT 59.728 47.619 9.28 0.00 41.46 2.71
321 322 1.482593 TGGGCCACAACGAATGTTTTT 59.517 42.857 0.00 0.00 41.46 1.94
434 446 4.007644 CGGACCTGCAGGCACAGA 62.008 66.667 33.06 0.00 40.25 3.41
505 518 2.156917 TCCAGCACTGAAGCAGATTTG 58.843 47.619 0.00 0.00 35.18 2.32
515 528 1.446907 AGCAGATTTGTTCCGAGCTG 58.553 50.000 0.00 0.00 0.00 4.24
516 529 0.449388 GCAGATTTGTTCCGAGCTGG 59.551 55.000 0.00 0.00 40.09 4.85
517 530 1.813513 CAGATTTGTTCCGAGCTGGT 58.186 50.000 0.00 0.00 39.52 4.00
518 531 1.466167 CAGATTTGTTCCGAGCTGGTG 59.534 52.381 0.00 0.00 39.52 4.17
538 551 2.223745 GGACCCTGCAAACGTTTCTAA 58.776 47.619 11.37 0.00 0.00 2.10
539 552 2.817844 GGACCCTGCAAACGTTTCTAAT 59.182 45.455 11.37 0.00 0.00 1.73
540 553 4.004982 GGACCCTGCAAACGTTTCTAATA 58.995 43.478 11.37 0.00 0.00 0.98
541 554 4.638865 GGACCCTGCAAACGTTTCTAATAT 59.361 41.667 11.37 0.00 0.00 1.28
542 555 5.220796 GGACCCTGCAAACGTTTCTAATATC 60.221 44.000 11.37 5.52 0.00 1.63
543 556 5.497474 ACCCTGCAAACGTTTCTAATATCT 58.503 37.500 11.37 0.00 0.00 1.98
544 557 6.646267 ACCCTGCAAACGTTTCTAATATCTA 58.354 36.000 11.37 0.00 0.00 1.98
560 573 9.344772 TCTAATATCTATCTATCGGGAAGCTTC 57.655 37.037 18.54 18.54 0.00 3.86
561 574 6.969993 ATATCTATCTATCGGGAAGCTTCC 57.030 41.667 33.67 33.67 46.82 3.46
614 627 6.530534 CCGATCTTGTGAGTACGTTTCTATTT 59.469 38.462 0.00 0.00 0.00 1.40
647 660 6.199376 TGGTAGGAACATGGTAGTATCAGAA 58.801 40.000 0.00 0.00 0.00 3.02
648 661 6.844388 TGGTAGGAACATGGTAGTATCAGAAT 59.156 38.462 0.00 0.00 0.00 2.40
650 663 7.015292 GGTAGGAACATGGTAGTATCAGAATCA 59.985 40.741 0.00 0.00 0.00 2.57
651 664 7.060383 AGGAACATGGTAGTATCAGAATCAG 57.940 40.000 0.00 0.00 0.00 2.90
652 665 6.841229 AGGAACATGGTAGTATCAGAATCAGA 59.159 38.462 0.00 0.00 0.00 3.27
662 675 3.998099 TCAGAATCAGATGCTACGGAG 57.002 47.619 0.00 0.00 0.00 4.63
749 989 1.248101 CGGCCCCAGGTTTTGTTAGG 61.248 60.000 0.00 0.00 0.00 2.69
794 1034 0.976641 TGCCACTCCGGATATGATCC 59.023 55.000 15.72 6.01 46.22 3.36
817 1057 2.660258 ATCCCGTGTGCTAATCCGGC 62.660 60.000 0.00 0.00 39.12 6.13
818 1058 2.895372 CCGTGTGCTAATCCGGCC 60.895 66.667 0.00 0.00 33.20 6.13
819 1059 3.261951 CGTGTGCTAATCCGGCCG 61.262 66.667 21.04 21.04 0.00 6.13
820 1060 2.895372 GTGTGCTAATCCGGCCGG 60.895 66.667 39.13 39.13 0.00 6.13
821 1061 3.395702 TGTGCTAATCCGGCCGGT 61.396 61.111 41.57 27.50 36.47 5.28
822 1062 2.895372 GTGCTAATCCGGCCGGTG 60.895 66.667 41.57 28.72 36.47 4.94
853 1100 5.447778 AGCAGTACTAGTACCTTCCAGTA 57.552 43.478 25.97 0.00 36.75 2.74
854 1101 5.192176 AGCAGTACTAGTACCTTCCAGTAC 58.808 45.833 25.97 3.39 42.30 2.73
910 1157 5.755375 CCCCGCTGCAGACATATATAAATAG 59.245 44.000 20.43 0.00 0.00 1.73
944 1191 6.815142 CCATCGATGATGCTTATCAGTTATCA 59.185 38.462 26.86 0.00 38.59 2.15
968 1215 1.135083 ACTCTTCGGTACCATTCGCAG 60.135 52.381 13.54 2.02 0.00 5.18
1004 1275 4.767928 GTCTATTCGATCCTACCACATCCT 59.232 45.833 0.00 0.00 0.00 3.24
1046 1319 4.040936 TCCTAATCCTAGCTAGAGCCTG 57.959 50.000 22.70 4.97 43.38 4.85
1112 1389 3.428282 CACCAAAGGTACGCGGCC 61.428 66.667 12.47 12.86 32.11 6.13
1140 1417 0.519077 GCTCCACTTACTGCTTGCAC 59.481 55.000 0.00 0.00 0.00 4.57
1158 1435 4.302455 TGCACCCATGTTTATGTTTTTCG 58.698 39.130 0.00 0.00 32.21 3.46
1179 1459 2.287547 GGTTGCTTGCTTTGATCGTCAA 60.288 45.455 0.00 0.00 34.03 3.18
1183 1463 4.619973 TGCTTGCTTTGATCGTCAAAAAT 58.380 34.783 12.17 0.00 44.69 1.82
1184 1464 5.767269 TGCTTGCTTTGATCGTCAAAAATA 58.233 33.333 12.17 2.71 44.69 1.40
1185 1465 6.212235 TGCTTGCTTTGATCGTCAAAAATAA 58.788 32.000 12.17 8.10 44.69 1.40
1187 1467 7.384660 TGCTTGCTTTGATCGTCAAAAATAAAT 59.615 29.630 12.17 0.00 44.69 1.40
1188 1468 8.859156 GCTTGCTTTGATCGTCAAAAATAAATA 58.141 29.630 12.17 0.00 44.69 1.40
1511 1829 4.879545 ACTGTACTTTGATTTGACGTGGTT 59.120 37.500 0.00 0.00 0.00 3.67
1532 1850 6.071334 TGGTTAGTTCGTCTGATCTTGATCTT 60.071 38.462 11.31 0.00 0.00 2.40
1533 1851 6.254589 GGTTAGTTCGTCTGATCTTGATCTTG 59.745 42.308 11.31 5.38 0.00 3.02
1534 1852 5.651387 AGTTCGTCTGATCTTGATCTTGA 57.349 39.130 11.31 7.27 0.00 3.02
1535 1853 6.219417 AGTTCGTCTGATCTTGATCTTGAT 57.781 37.500 11.31 0.00 0.00 2.57
1536 1854 7.340122 AGTTCGTCTGATCTTGATCTTGATA 57.660 36.000 11.31 2.11 0.00 2.15
1537 1855 7.950512 AGTTCGTCTGATCTTGATCTTGATAT 58.049 34.615 11.31 0.00 0.00 1.63
1538 1856 7.866898 AGTTCGTCTGATCTTGATCTTGATATG 59.133 37.037 11.31 5.52 0.00 1.78
1539 1857 7.282332 TCGTCTGATCTTGATCTTGATATGT 57.718 36.000 11.31 0.00 0.00 2.29
1540 1858 7.720442 TCGTCTGATCTTGATCTTGATATGTT 58.280 34.615 11.31 0.00 0.00 2.71
1541 1859 8.850156 TCGTCTGATCTTGATCTTGATATGTTA 58.150 33.333 11.31 0.00 0.00 2.41
1542 1860 9.468532 CGTCTGATCTTGATCTTGATATGTTAA 57.531 33.333 11.31 0.00 0.00 2.01
1544 1862 9.993454 TCTGATCTTGATCTTGATATGTTAAGG 57.007 33.333 11.31 0.00 0.00 2.69
1545 1863 9.217278 CTGATCTTGATCTTGATATGTTAAGGG 57.783 37.037 11.31 0.00 0.00 3.95
1546 1864 7.663081 TGATCTTGATCTTGATATGTTAAGGGC 59.337 37.037 11.31 0.00 0.00 5.19
1547 1865 7.141758 TCTTGATCTTGATATGTTAAGGGCT 57.858 36.000 0.00 0.00 0.00 5.19
1548 1866 7.577303 TCTTGATCTTGATATGTTAAGGGCTT 58.423 34.615 0.00 0.00 0.00 4.35
1549 1867 7.716998 TCTTGATCTTGATATGTTAAGGGCTTC 59.283 37.037 0.00 0.00 0.00 3.86
1550 1868 7.141758 TGATCTTGATATGTTAAGGGCTTCT 57.858 36.000 0.00 0.00 0.00 2.85
1551 1869 7.577303 TGATCTTGATATGTTAAGGGCTTCTT 58.423 34.615 0.00 0.00 39.40 2.52
1552 1870 8.055181 TGATCTTGATATGTTAAGGGCTTCTTT 58.945 33.333 0.00 0.00 36.93 2.52
1553 1871 7.630242 TCTTGATATGTTAAGGGCTTCTTTG 57.370 36.000 0.00 0.00 36.93 2.77
1554 1872 7.402054 TCTTGATATGTTAAGGGCTTCTTTGA 58.598 34.615 0.00 0.00 36.93 2.69
1555 1873 8.055181 TCTTGATATGTTAAGGGCTTCTTTGAT 58.945 33.333 0.00 0.00 36.93 2.57
1556 1874 8.593945 TTGATATGTTAAGGGCTTCTTTGATT 57.406 30.769 0.00 0.00 36.93 2.57
1557 1875 8.225603 TGATATGTTAAGGGCTTCTTTGATTC 57.774 34.615 0.00 0.00 36.93 2.52
1558 1876 7.833682 TGATATGTTAAGGGCTTCTTTGATTCA 59.166 33.333 0.00 0.00 36.93 2.57
1559 1877 6.916360 ATGTTAAGGGCTTCTTTGATTCAA 57.084 33.333 0.00 0.00 36.93 2.69
1560 1878 6.723298 TGTTAAGGGCTTCTTTGATTCAAA 57.277 33.333 11.19 11.19 36.93 2.69
1573 1891 7.605410 CTTTGATTCAAAGGAATTTCATGGG 57.395 36.000 25.14 2.45 44.75 4.00
1574 1892 6.931790 TTGATTCAAAGGAATTTCATGGGA 57.068 33.333 0.00 0.00 43.69 4.37
1575 1893 6.284891 TGATTCAAAGGAATTTCATGGGAC 57.715 37.500 0.00 0.00 43.69 4.46
1576 1894 6.018469 TGATTCAAAGGAATTTCATGGGACT 58.982 36.000 0.00 0.00 43.69 3.85
1577 1895 6.497954 TGATTCAAAGGAATTTCATGGGACTT 59.502 34.615 0.00 0.00 43.69 3.01
1578 1896 6.745794 TTCAAAGGAATTTCATGGGACTTT 57.254 33.333 0.00 0.00 0.00 2.66
1579 1897 6.745794 TCAAAGGAATTTCATGGGACTTTT 57.254 33.333 0.00 0.00 0.00 2.27
1580 1898 6.523840 TCAAAGGAATTTCATGGGACTTTTG 58.476 36.000 0.00 0.00 0.00 2.44
1581 1899 5.488262 AAGGAATTTCATGGGACTTTTGG 57.512 39.130 0.00 0.00 0.00 3.28
1582 1900 4.750941 AGGAATTTCATGGGACTTTTGGA 58.249 39.130 0.00 0.00 0.00 3.53
1583 1901 4.774200 AGGAATTTCATGGGACTTTTGGAG 59.226 41.667 0.00 0.00 0.00 3.86
1584 1902 4.081476 GGAATTTCATGGGACTTTTGGAGG 60.081 45.833 0.00 0.00 0.00 4.30
1585 1903 2.603075 TTCATGGGACTTTTGGAGGG 57.397 50.000 0.00 0.00 0.00 4.30
1586 1904 1.455822 TCATGGGACTTTTGGAGGGT 58.544 50.000 0.00 0.00 0.00 4.34
1587 1905 1.786441 TCATGGGACTTTTGGAGGGTT 59.214 47.619 0.00 0.00 0.00 4.11
1588 1906 2.990284 TCATGGGACTTTTGGAGGGTTA 59.010 45.455 0.00 0.00 0.00 2.85
1589 1907 3.010138 TCATGGGACTTTTGGAGGGTTAG 59.990 47.826 0.00 0.00 0.00 2.34
1590 1908 2.708759 TGGGACTTTTGGAGGGTTAGA 58.291 47.619 0.00 0.00 0.00 2.10
1591 1909 3.057586 TGGGACTTTTGGAGGGTTAGAA 58.942 45.455 0.00 0.00 0.00 2.10
1592 1910 3.660669 TGGGACTTTTGGAGGGTTAGAAT 59.339 43.478 0.00 0.00 0.00 2.40
1593 1911 4.263771 TGGGACTTTTGGAGGGTTAGAATC 60.264 45.833 0.00 0.00 0.00 2.52
1594 1912 4.270834 GGACTTTTGGAGGGTTAGAATCC 58.729 47.826 0.00 0.00 0.00 3.01
1595 1913 4.018324 GGACTTTTGGAGGGTTAGAATCCT 60.018 45.833 0.00 0.00 43.90 3.24
1596 1914 5.516768 GGACTTTTGGAGGGTTAGAATCCTT 60.517 44.000 0.00 0.00 40.40 3.36
1597 1915 6.296836 GGACTTTTGGAGGGTTAGAATCCTTA 60.297 42.308 0.00 0.00 40.40 2.69
1598 1916 6.722328 ACTTTTGGAGGGTTAGAATCCTTAG 58.278 40.000 0.00 0.00 40.40 2.18
1599 1917 5.710409 TTTGGAGGGTTAGAATCCTTAGG 57.290 43.478 0.00 0.00 40.40 2.69
1600 1918 4.637288 TGGAGGGTTAGAATCCTTAGGA 57.363 45.455 2.37 2.37 40.40 2.94
1601 1919 5.171541 TGGAGGGTTAGAATCCTTAGGAT 57.828 43.478 8.15 8.15 45.46 3.24
1617 1935 8.575649 TCCTTAGGATTTTTCCTACATTTGTC 57.424 34.615 0.00 0.00 41.67 3.18
1618 1936 7.335924 TCCTTAGGATTTTTCCTACATTTGTCG 59.664 37.037 0.00 0.00 41.67 4.35
1619 1937 7.120726 CCTTAGGATTTTTCCTACATTTGTCGT 59.879 37.037 0.00 0.00 41.67 4.34
1620 1938 6.894339 AGGATTTTTCCTACATTTGTCGTT 57.106 33.333 0.00 0.00 38.58 3.85
1621 1939 7.284919 AGGATTTTTCCTACATTTGTCGTTT 57.715 32.000 0.00 0.00 38.58 3.60
1622 1940 7.145323 AGGATTTTTCCTACATTTGTCGTTTG 58.855 34.615 0.00 0.00 38.58 2.93
1623 1941 7.013846 AGGATTTTTCCTACATTTGTCGTTTGA 59.986 33.333 0.00 0.00 38.58 2.69
1624 1942 7.812669 GGATTTTTCCTACATTTGTCGTTTGAT 59.187 33.333 0.00 0.00 0.00 2.57
1625 1943 9.191995 GATTTTTCCTACATTTGTCGTTTGATT 57.808 29.630 0.00 0.00 0.00 2.57
1626 1944 8.568732 TTTTTCCTACATTTGTCGTTTGATTC 57.431 30.769 0.00 0.00 0.00 2.52
1627 1945 6.869315 TTCCTACATTTGTCGTTTGATTCA 57.131 33.333 0.00 0.00 0.00 2.57
1628 1946 6.236017 TCCTACATTTGTCGTTTGATTCAC 57.764 37.500 0.00 0.00 0.00 3.18
1629 1947 5.760743 TCCTACATTTGTCGTTTGATTCACA 59.239 36.000 0.00 0.00 0.00 3.58
1630 1948 6.073276 TCCTACATTTGTCGTTTGATTCACAG 60.073 38.462 0.00 0.00 0.00 3.66
1631 1949 4.858935 ACATTTGTCGTTTGATTCACAGG 58.141 39.130 0.00 0.00 0.00 4.00
1632 1950 4.578516 ACATTTGTCGTTTGATTCACAGGA 59.421 37.500 0.00 0.00 0.00 3.86
1633 1951 5.241506 ACATTTGTCGTTTGATTCACAGGAT 59.758 36.000 0.00 0.00 0.00 3.24
1634 1952 5.766150 TTTGTCGTTTGATTCACAGGATT 57.234 34.783 0.00 0.00 0.00 3.01
1635 1953 4.747540 TGTCGTTTGATTCACAGGATTG 57.252 40.909 0.00 0.00 0.00 2.67
1636 1954 4.384940 TGTCGTTTGATTCACAGGATTGA 58.615 39.130 0.00 0.00 0.00 2.57
1637 1955 4.819088 TGTCGTTTGATTCACAGGATTGAA 59.181 37.500 0.00 0.00 39.79 2.69
1638 1956 5.473162 TGTCGTTTGATTCACAGGATTGAAT 59.527 36.000 0.00 0.00 46.73 2.57
1680 1998 9.817809 TCTATGGAATCAAGTGTACTACATTTC 57.182 33.333 0.00 0.00 0.00 2.17
1681 1999 9.599866 CTATGGAATCAAGTGTACTACATTTCA 57.400 33.333 0.00 0.00 0.00 2.69
1683 2001 8.862325 TGGAATCAAGTGTACTACATTTCATT 57.138 30.769 0.00 0.00 0.00 2.57
1684 2002 8.729756 TGGAATCAAGTGTACTACATTTCATTG 58.270 33.333 0.00 0.00 0.00 2.82
1685 2003 8.946085 GGAATCAAGTGTACTACATTTCATTGA 58.054 33.333 0.00 3.52 0.00 2.57
1698 2016 9.674824 CTACATTTCATTGAAAATCTAGCATCC 57.325 33.333 15.34 0.00 35.11 3.51
1699 2017 8.070034 ACATTTCATTGAAAATCTAGCATCCA 57.930 30.769 15.34 0.00 35.11 3.41
1700 2018 7.977853 ACATTTCATTGAAAATCTAGCATCCAC 59.022 33.333 15.34 0.00 35.11 4.02
1701 2019 7.707624 TTTCATTGAAAATCTAGCATCCACT 57.292 32.000 9.36 0.00 0.00 4.00
1702 2020 6.932356 TCATTGAAAATCTAGCATCCACTC 57.068 37.500 0.00 0.00 0.00 3.51
1703 2021 6.656902 TCATTGAAAATCTAGCATCCACTCT 58.343 36.000 0.00 0.00 0.00 3.24
1704 2022 7.795047 TCATTGAAAATCTAGCATCCACTCTA 58.205 34.615 0.00 0.00 0.00 2.43
1705 2023 8.267183 TCATTGAAAATCTAGCATCCACTCTAA 58.733 33.333 0.00 0.00 0.00 2.10
1706 2024 7.849804 TTGAAAATCTAGCATCCACTCTAAC 57.150 36.000 0.00 0.00 0.00 2.34
1707 2025 6.349300 TGAAAATCTAGCATCCACTCTAACC 58.651 40.000 0.00 0.00 0.00 2.85
1708 2026 6.156949 TGAAAATCTAGCATCCACTCTAACCT 59.843 38.462 0.00 0.00 0.00 3.50
1709 2027 6.567602 AAATCTAGCATCCACTCTAACCTT 57.432 37.500 0.00 0.00 0.00 3.50
1710 2028 6.567602 AATCTAGCATCCACTCTAACCTTT 57.432 37.500 0.00 0.00 0.00 3.11
1711 2029 6.567602 ATCTAGCATCCACTCTAACCTTTT 57.432 37.500 0.00 0.00 0.00 2.27
1712 2030 6.374417 TCTAGCATCCACTCTAACCTTTTT 57.626 37.500 0.00 0.00 0.00 1.94
1739 2057 9.705290 TTTCAATTCCTTTATTTTTCCTGTAGC 57.295 29.630 0.00 0.00 0.00 3.58
1740 2058 7.535139 TCAATTCCTTTATTTTTCCTGTAGCG 58.465 34.615 0.00 0.00 0.00 4.26
1741 2059 7.175990 TCAATTCCTTTATTTTTCCTGTAGCGT 59.824 33.333 0.00 0.00 0.00 5.07
1742 2060 6.490566 TTCCTTTATTTTTCCTGTAGCGTC 57.509 37.500 0.00 0.00 0.00 5.19
1743 2061 5.553123 TCCTTTATTTTTCCTGTAGCGTCA 58.447 37.500 0.00 0.00 0.00 4.35
1744 2062 5.998981 TCCTTTATTTTTCCTGTAGCGTCAA 59.001 36.000 0.00 0.00 0.00 3.18
1745 2063 6.487331 TCCTTTATTTTTCCTGTAGCGTCAAA 59.513 34.615 0.00 0.00 0.00 2.69
1746 2064 6.581166 CCTTTATTTTTCCTGTAGCGTCAAAC 59.419 38.462 0.00 0.00 0.00 2.93
1747 2065 6.621316 TTATTTTTCCTGTAGCGTCAAACA 57.379 33.333 0.00 0.00 0.00 2.83
1748 2066 3.955771 TTTTCCTGTAGCGTCAAACAC 57.044 42.857 0.00 0.00 0.00 3.32
1749 2067 2.902705 TTCCTGTAGCGTCAAACACT 57.097 45.000 0.00 0.00 0.00 3.55
1750 2068 2.433868 TCCTGTAGCGTCAAACACTC 57.566 50.000 0.00 0.00 0.00 3.51
1751 2069 1.961394 TCCTGTAGCGTCAAACACTCT 59.039 47.619 0.00 0.00 0.00 3.24
1752 2070 3.151554 TCCTGTAGCGTCAAACACTCTA 58.848 45.455 0.00 0.00 0.00 2.43
1753 2071 3.762288 TCCTGTAGCGTCAAACACTCTAT 59.238 43.478 0.00 0.00 0.00 1.98
1754 2072 4.106197 CCTGTAGCGTCAAACACTCTATC 58.894 47.826 0.00 0.00 0.00 2.08
1755 2073 4.106029 TGTAGCGTCAAACACTCTATCC 57.894 45.455 0.00 0.00 0.00 2.59
1756 2074 3.762288 TGTAGCGTCAAACACTCTATCCT 59.238 43.478 0.00 0.00 0.00 3.24
1757 2075 4.945543 TGTAGCGTCAAACACTCTATCCTA 59.054 41.667 0.00 0.00 0.00 2.94
1758 2076 5.416639 TGTAGCGTCAAACACTCTATCCTAA 59.583 40.000 0.00 0.00 0.00 2.69
1759 2077 5.599999 AGCGTCAAACACTCTATCCTAAT 57.400 39.130 0.00 0.00 0.00 1.73
1760 2078 5.593010 AGCGTCAAACACTCTATCCTAATC 58.407 41.667 0.00 0.00 0.00 1.75
1761 2079 4.745620 GCGTCAAACACTCTATCCTAATCC 59.254 45.833 0.00 0.00 0.00 3.01
1762 2080 5.452077 GCGTCAAACACTCTATCCTAATCCT 60.452 44.000 0.00 0.00 0.00 3.24
1763 2081 6.238953 GCGTCAAACACTCTATCCTAATCCTA 60.239 42.308 0.00 0.00 0.00 2.94
1764 2082 7.524038 GCGTCAAACACTCTATCCTAATCCTAT 60.524 40.741 0.00 0.00 0.00 2.57
1765 2083 9.011095 CGTCAAACACTCTATCCTAATCCTATA 57.989 37.037 0.00 0.00 0.00 1.31
1784 2102 8.169977 TCCTATAGAATTCAAATGAACATGCC 57.830 34.615 8.44 0.00 36.80 4.40
1785 2103 7.779326 TCCTATAGAATTCAAATGAACATGCCA 59.221 33.333 8.44 0.00 36.80 4.92
1786 2104 7.864379 CCTATAGAATTCAAATGAACATGCCAC 59.136 37.037 8.44 0.00 36.80 5.01
1787 2105 5.733620 AGAATTCAAATGAACATGCCACT 57.266 34.783 8.44 0.00 36.80 4.00
1788 2106 5.717119 AGAATTCAAATGAACATGCCACTC 58.283 37.500 8.44 0.00 36.80 3.51
1789 2107 5.244402 AGAATTCAAATGAACATGCCACTCA 59.756 36.000 8.44 0.00 36.80 3.41
1790 2108 4.933505 TTCAAATGAACATGCCACTCAA 57.066 36.364 0.00 0.00 0.00 3.02
1791 2109 4.933505 TCAAATGAACATGCCACTCAAA 57.066 36.364 0.00 0.00 0.00 2.69
1792 2110 5.471556 TCAAATGAACATGCCACTCAAAT 57.528 34.783 0.00 0.00 0.00 2.32
1793 2111 5.472148 TCAAATGAACATGCCACTCAAATC 58.528 37.500 0.00 0.00 0.00 2.17
1794 2112 4.460948 AATGAACATGCCACTCAAATCC 57.539 40.909 0.00 0.00 0.00 3.01
1795 2113 3.159213 TGAACATGCCACTCAAATCCT 57.841 42.857 0.00 0.00 0.00 3.24
1796 2114 2.821378 TGAACATGCCACTCAAATCCTG 59.179 45.455 0.00 0.00 0.00 3.86
1797 2115 2.592102 ACATGCCACTCAAATCCTGT 57.408 45.000 0.00 0.00 0.00 4.00
1798 2116 3.719268 ACATGCCACTCAAATCCTGTA 57.281 42.857 0.00 0.00 0.00 2.74
1799 2117 4.240881 ACATGCCACTCAAATCCTGTAT 57.759 40.909 0.00 0.00 0.00 2.29
1800 2118 4.603131 ACATGCCACTCAAATCCTGTATT 58.397 39.130 0.00 0.00 0.00 1.89
1801 2119 5.018809 ACATGCCACTCAAATCCTGTATTT 58.981 37.500 0.00 0.00 38.36 1.40
1802 2120 5.481473 ACATGCCACTCAAATCCTGTATTTT 59.519 36.000 0.00 0.00 35.54 1.82
1803 2121 5.643379 TGCCACTCAAATCCTGTATTTTC 57.357 39.130 0.00 0.00 35.54 2.29
1804 2122 5.324409 TGCCACTCAAATCCTGTATTTTCT 58.676 37.500 0.00 0.00 35.54 2.52
1805 2123 5.415701 TGCCACTCAAATCCTGTATTTTCTC 59.584 40.000 0.00 0.00 35.54 2.87
1806 2124 5.649831 GCCACTCAAATCCTGTATTTTCTCT 59.350 40.000 0.00 0.00 35.54 3.10
1807 2125 6.823689 GCCACTCAAATCCTGTATTTTCTCTA 59.176 38.462 0.00 0.00 35.54 2.43
1808 2126 7.500559 GCCACTCAAATCCTGTATTTTCTCTAT 59.499 37.037 0.00 0.00 35.54 1.98
1809 2127 9.401058 CCACTCAAATCCTGTATTTTCTCTATT 57.599 33.333 0.00 0.00 35.54 1.73
1811 2129 9.620259 ACTCAAATCCTGTATTTTCTCTATTCC 57.380 33.333 0.00 0.00 35.54 3.01
1812 2130 8.980481 TCAAATCCTGTATTTTCTCTATTCCC 57.020 34.615 0.00 0.00 35.54 3.97
1813 2131 8.556589 TCAAATCCTGTATTTTCTCTATTCCCA 58.443 33.333 0.00 0.00 35.54 4.37
1814 2132 8.624776 CAAATCCTGTATTTTCTCTATTCCCAC 58.375 37.037 0.00 0.00 35.54 4.61
1815 2133 5.914033 TCCTGTATTTTCTCTATTCCCACG 58.086 41.667 0.00 0.00 0.00 4.94
1816 2134 5.424252 TCCTGTATTTTCTCTATTCCCACGT 59.576 40.000 0.00 0.00 0.00 4.49
1817 2135 6.070424 TCCTGTATTTTCTCTATTCCCACGTT 60.070 38.462 0.00 0.00 0.00 3.99
1818 2136 6.598064 CCTGTATTTTCTCTATTCCCACGTTT 59.402 38.462 0.00 0.00 0.00 3.60
1819 2137 7.201617 CCTGTATTTTCTCTATTCCCACGTTTC 60.202 40.741 0.00 0.00 0.00 2.78
1820 2138 5.796350 ATTTTCTCTATTCCCACGTTTCG 57.204 39.130 0.00 0.00 0.00 3.46
1821 2139 4.524316 TTTCTCTATTCCCACGTTTCGA 57.476 40.909 0.00 0.00 0.00 3.71
1822 2140 4.524316 TTCTCTATTCCCACGTTTCGAA 57.476 40.909 0.00 0.00 0.00 3.71
1823 2141 4.524316 TCTCTATTCCCACGTTTCGAAA 57.476 40.909 6.47 6.47 0.00 3.46
1824 2142 4.885413 TCTCTATTCCCACGTTTCGAAAA 58.115 39.130 13.10 0.00 0.00 2.29
1825 2143 5.484715 TCTCTATTCCCACGTTTCGAAAAT 58.515 37.500 13.10 3.21 0.00 1.82
1826 2144 5.579511 TCTCTATTCCCACGTTTCGAAAATC 59.420 40.000 13.10 0.00 0.00 2.17
1827 2145 3.842732 ATTCCCACGTTTCGAAAATCC 57.157 42.857 13.10 0.00 0.00 3.01
1828 2146 2.554370 TCCCACGTTTCGAAAATCCT 57.446 45.000 13.10 0.00 0.00 3.24
1829 2147 2.147958 TCCCACGTTTCGAAAATCCTG 58.852 47.619 13.10 5.40 0.00 3.86
1830 2148 1.401018 CCCACGTTTCGAAAATCCTGC 60.401 52.381 13.10 0.00 0.00 4.85
1831 2149 1.265635 CCACGTTTCGAAAATCCTGCA 59.734 47.619 13.10 0.00 0.00 4.41
1832 2150 2.287308 CCACGTTTCGAAAATCCTGCAA 60.287 45.455 13.10 0.00 0.00 4.08
1833 2151 3.367607 CACGTTTCGAAAATCCTGCAAA 58.632 40.909 13.10 0.00 0.00 3.68
1834 2152 3.980775 CACGTTTCGAAAATCCTGCAAAT 59.019 39.130 13.10 0.00 0.00 2.32
1835 2153 4.088496 CACGTTTCGAAAATCCTGCAAATC 59.912 41.667 13.10 0.00 0.00 2.17
1836 2154 4.225984 CGTTTCGAAAATCCTGCAAATCA 58.774 39.130 13.10 0.00 0.00 2.57
1837 2155 4.679197 CGTTTCGAAAATCCTGCAAATCAA 59.321 37.500 13.10 0.00 0.00 2.57
1838 2156 5.174761 CGTTTCGAAAATCCTGCAAATCAAA 59.825 36.000 13.10 0.00 0.00 2.69
1839 2157 6.584056 GTTTCGAAAATCCTGCAAATCAAAG 58.416 36.000 13.10 0.00 0.00 2.77
1840 2158 5.703978 TCGAAAATCCTGCAAATCAAAGA 57.296 34.783 0.00 0.00 0.00 2.52
1841 2159 5.702865 TCGAAAATCCTGCAAATCAAAGAG 58.297 37.500 0.00 0.00 0.00 2.85
1842 2160 4.860907 CGAAAATCCTGCAAATCAAAGAGG 59.139 41.667 0.00 0.00 0.00 3.69
1843 2161 4.813750 AAATCCTGCAAATCAAAGAGGG 57.186 40.909 0.00 0.00 0.00 4.30
1844 2162 1.549203 TCCTGCAAATCAAAGAGGGC 58.451 50.000 0.00 0.00 0.00 5.19
1849 2167 3.505386 TGCAAATCAAAGAGGGCCTAAA 58.495 40.909 5.73 0.00 0.00 1.85
1851 2169 4.160252 TGCAAATCAAAGAGGGCCTAAATC 59.840 41.667 5.73 0.00 0.00 2.17
1907 2226 1.374947 CTGGGCCTTCCTCAACGAA 59.625 57.895 4.53 0.00 36.20 3.85
2066 2402 3.309582 GCCTACTGCCTGCACCTA 58.690 61.111 0.00 0.00 0.00 3.08
2068 2404 1.826024 CCTACTGCCTGCACCTAGG 59.174 63.158 7.41 7.41 40.95 3.02
2069 2405 0.687757 CCTACTGCCTGCACCTAGGA 60.688 60.000 17.98 0.00 40.42 2.94
2070 2406 1.418334 CTACTGCCTGCACCTAGGAT 58.582 55.000 17.98 0.00 40.42 3.24
2185 2541 8.557029 AGTAAAGTACGGAGTGAATTTCAAAAG 58.443 33.333 0.00 0.00 45.73 2.27
2190 2546 8.047310 AGTACGGAGTGAATTTCAAAAGGATAT 58.953 33.333 0.00 0.00 45.73 1.63
2193 2549 9.238368 ACGGAGTGAATTTCAAAAGGATATAAA 57.762 29.630 0.00 0.00 42.51 1.40
2229 2585 1.351350 GGACTTTAGGCCAACTCCACT 59.649 52.381 5.01 0.00 0.00 4.00
2230 2586 2.427506 GACTTTAGGCCAACTCCACTG 58.572 52.381 5.01 0.00 0.00 3.66
2261 2617 4.308458 CTTGTCCGGGTGCGTCCA 62.308 66.667 0.00 0.00 38.11 4.02
2279 2636 4.070009 GTCCATTTGGAGTAAAACGGACT 58.930 43.478 7.47 0.00 46.49 3.85
2446 2832 1.076632 ACTAGCAGTCCCTCCCTCG 60.077 63.158 0.00 0.00 0.00 4.63
2451 2837 3.003763 AGTCCCTCCCTCGCAACC 61.004 66.667 0.00 0.00 0.00 3.77
2459 2846 1.971695 CCCTCGCAACCCTTCAACC 60.972 63.158 0.00 0.00 0.00 3.77
2460 2847 1.971695 CCTCGCAACCCTTCAACCC 60.972 63.158 0.00 0.00 0.00 4.11
2461 2848 1.073199 CTCGCAACCCTTCAACCCT 59.927 57.895 0.00 0.00 0.00 4.34
2462 2849 0.955919 CTCGCAACCCTTCAACCCTC 60.956 60.000 0.00 0.00 0.00 4.30
2463 2850 1.073199 CGCAACCCTTCAACCCTCT 59.927 57.895 0.00 0.00 0.00 3.69
2464 2851 0.955919 CGCAACCCTTCAACCCTCTC 60.956 60.000 0.00 0.00 0.00 3.20
2465 2852 0.402121 GCAACCCTTCAACCCTCTCT 59.598 55.000 0.00 0.00 0.00 3.10
2471 2858 0.820871 CTTCAACCCTCTCTCTCCCG 59.179 60.000 0.00 0.00 0.00 5.14
2575 2971 1.153168 GTGTAGACATGGCCGCCAT 60.153 57.895 19.79 19.79 46.37 4.40
2751 3152 4.641645 CACCCCTGCTGCGTCCAA 62.642 66.667 0.00 0.00 0.00 3.53
2760 3161 0.376152 GCTGCGTCCAAGTGATCATG 59.624 55.000 0.00 0.00 0.00 3.07
2768 3169 1.033746 CAAGTGATCATGGCGGCCTT 61.034 55.000 21.46 11.55 0.00 4.35
2821 3224 0.322098 TGCCCACAAAGGTATGGACG 60.322 55.000 0.00 0.00 38.34 4.79
2866 3269 3.563808 CCACTTTCTTTGTTCATCGGACA 59.436 43.478 0.00 0.00 0.00 4.02
2877 3283 1.200484 TCATCGGACAATTCGTCGTCA 59.800 47.619 0.00 0.00 46.42 4.35
2894 3300 4.208873 GTCGTCAGATGATGAAGATCTTGC 59.791 45.833 14.00 5.38 46.11 4.01
3191 3598 5.189180 GTTCTCCTCTTACCAGAAATGCAT 58.811 41.667 0.00 0.00 0.00 3.96
3199 3606 2.124570 AGAAATGCATCGCGGCCT 60.125 55.556 6.13 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.666577 CGTCGTCCTTGGAACACCTC 60.667 60.000 0.00 0.00 39.29 3.85
1 2 1.111116 TCGTCGTCCTTGGAACACCT 61.111 55.000 0.00 0.00 39.29 4.00
3 4 0.666577 CCTCGTCGTCCTTGGAACAC 60.667 60.000 0.00 0.00 39.29 3.32
5 6 1.737008 GCCTCGTCGTCCTTGGAAC 60.737 63.158 0.00 0.00 0.00 3.62
6 7 2.654877 GCCTCGTCGTCCTTGGAA 59.345 61.111 0.00 0.00 0.00 3.53
48 49 0.248702 TTTTGGCGTGAAAGAACCGC 60.249 50.000 0.00 0.00 46.28 5.68
49 50 2.315901 GATTTTGGCGTGAAAGAACCG 58.684 47.619 0.00 0.00 0.00 4.44
50 51 2.315901 CGATTTTGGCGTGAAAGAACC 58.684 47.619 0.00 0.00 0.00 3.62
51 52 1.713932 GCGATTTTGGCGTGAAAGAAC 59.286 47.619 0.00 0.00 0.00 3.01
52 53 1.606668 AGCGATTTTGGCGTGAAAGAA 59.393 42.857 0.00 0.00 35.00 2.52
53 54 1.196808 GAGCGATTTTGGCGTGAAAGA 59.803 47.619 0.00 0.00 35.00 2.52
54 55 1.606606 GAGCGATTTTGGCGTGAAAG 58.393 50.000 0.00 0.00 35.00 2.62
55 56 0.110419 CGAGCGATTTTGGCGTGAAA 60.110 50.000 0.00 0.00 35.00 2.69
56 57 1.495509 CGAGCGATTTTGGCGTGAA 59.504 52.632 0.00 0.00 35.00 3.18
57 58 3.022401 GCGAGCGATTTTGGCGTGA 62.022 57.895 0.00 0.00 35.00 4.35
58 59 2.574212 GCGAGCGATTTTGGCGTG 60.574 61.111 0.00 0.00 35.00 5.34
59 60 3.799755 GGCGAGCGATTTTGGCGT 61.800 61.111 0.00 0.00 35.00 5.68
60 61 4.536687 GGGCGAGCGATTTTGGCG 62.537 66.667 0.00 0.00 35.00 5.69
61 62 4.193334 GGGGCGAGCGATTTTGGC 62.193 66.667 0.00 0.00 0.00 4.52
62 63 2.749839 TGGGGCGAGCGATTTTGG 60.750 61.111 0.00 0.00 0.00 3.28
63 64 2.793946 CTGGGGCGAGCGATTTTG 59.206 61.111 0.00 0.00 0.00 2.44
64 65 3.134127 GCTGGGGCGAGCGATTTT 61.134 61.111 0.00 0.00 0.00 1.82
87 88 2.203280 TTGAACCCGGTGTGCTGG 60.203 61.111 0.00 0.00 40.89 4.85
88 89 2.551912 GGTTGAACCCGGTGTGCTG 61.552 63.158 2.08 0.00 30.04 4.41
89 90 2.203294 GGTTGAACCCGGTGTGCT 60.203 61.111 2.08 0.00 30.04 4.40
90 91 2.203294 AGGTTGAACCCGGTGTGC 60.203 61.111 11.41 0.00 39.75 4.57
91 92 1.896660 CCAGGTTGAACCCGGTGTG 60.897 63.158 11.41 1.96 39.75 3.82
92 93 2.513895 CCAGGTTGAACCCGGTGT 59.486 61.111 11.41 0.00 39.75 4.16
93 94 2.282180 CCCAGGTTGAACCCGGTG 60.282 66.667 15.15 5.56 39.75 4.94
94 95 2.775219 ACCCAGGTTGAACCCGGT 60.775 61.111 15.15 15.53 39.75 5.28
95 96 2.033602 GACCCAGGTTGAACCCGG 59.966 66.667 11.41 10.51 39.75 5.73
96 97 2.033602 GGACCCAGGTTGAACCCG 59.966 66.667 11.41 0.00 39.75 5.28
97 98 2.033602 CGGACCCAGGTTGAACCC 59.966 66.667 11.41 0.00 39.75 4.11
98 99 2.671963 GCGGACCCAGGTTGAACC 60.672 66.667 6.16 6.16 38.99 3.62
99 100 2.671963 GGCGGACCCAGGTTGAAC 60.672 66.667 0.00 0.00 0.00 3.18
100 101 4.323477 CGGCGGACCCAGGTTGAA 62.323 66.667 0.00 0.00 0.00 2.69
110 111 3.164390 GAAATTAGCGCCGGCGGAC 62.164 63.158 45.81 31.88 46.35 4.79
111 112 2.893404 GAAATTAGCGCCGGCGGA 60.893 61.111 45.81 14.97 46.35 5.54
112 113 4.293626 CGAAATTAGCGCCGGCGG 62.294 66.667 45.81 29.29 46.35 6.13
119 120 0.179148 GGTTTGGGGCGAAATTAGCG 60.179 55.000 0.00 0.00 35.00 4.26
120 121 0.179148 CGGTTTGGGGCGAAATTAGC 60.179 55.000 0.00 0.00 0.00 3.09
121 122 0.454196 CCGGTTTGGGGCGAAATTAG 59.546 55.000 0.00 0.00 0.00 1.73
122 123 1.596895 GCCGGTTTGGGGCGAAATTA 61.597 55.000 1.90 0.00 41.39 1.40
123 124 2.938086 GCCGGTTTGGGGCGAAATT 61.938 57.895 1.90 0.00 41.39 1.82
124 125 3.378602 GCCGGTTTGGGGCGAAAT 61.379 61.111 1.90 0.00 41.39 2.17
145 146 1.812708 CGTCCCCGGAAGTCTGTTTTT 60.813 52.381 0.73 0.00 0.00 1.94
146 147 0.250166 CGTCCCCGGAAGTCTGTTTT 60.250 55.000 0.73 0.00 0.00 2.43
147 148 1.370064 CGTCCCCGGAAGTCTGTTT 59.630 57.895 0.73 0.00 0.00 2.83
148 149 1.835712 ACGTCCCCGGAAGTCTGTT 60.836 57.895 0.73 0.00 38.78 3.16
149 150 2.203596 ACGTCCCCGGAAGTCTGT 60.204 61.111 0.73 0.00 38.78 3.41
150 151 2.261671 CACGTCCCCGGAAGTCTG 59.738 66.667 0.73 0.00 34.81 3.51
151 152 2.116772 TCACGTCCCCGGAAGTCT 59.883 61.111 0.73 0.00 34.81 3.24
152 153 2.260743 GTCACGTCCCCGGAAGTC 59.739 66.667 0.73 0.00 34.81 3.01
153 154 2.203596 AGTCACGTCCCCGGAAGT 60.204 61.111 0.73 0.00 37.32 3.01
154 155 2.261671 CAGTCACGTCCCCGGAAG 59.738 66.667 0.73 0.00 38.78 3.46
155 156 3.307906 CCAGTCACGTCCCCGGAA 61.308 66.667 0.73 0.00 38.78 4.30
156 157 4.289101 TCCAGTCACGTCCCCGGA 62.289 66.667 0.73 0.00 38.78 5.14
157 158 4.065281 GTCCAGTCACGTCCCCGG 62.065 72.222 0.00 0.00 38.78 5.73
158 159 2.989824 AGTCCAGTCACGTCCCCG 60.990 66.667 0.00 0.00 40.83 5.73
159 160 1.755393 AACAGTCCAGTCACGTCCCC 61.755 60.000 0.00 0.00 0.00 4.81
160 161 0.106149 AAACAGTCCAGTCACGTCCC 59.894 55.000 0.00 0.00 0.00 4.46
161 162 1.949465 AAAACAGTCCAGTCACGTCC 58.051 50.000 0.00 0.00 0.00 4.79
162 163 2.034001 CGAAAAACAGTCCAGTCACGTC 60.034 50.000 0.00 0.00 0.00 4.34
163 164 1.931172 CGAAAAACAGTCCAGTCACGT 59.069 47.619 0.00 0.00 0.00 4.49
164 165 1.260561 CCGAAAAACAGTCCAGTCACG 59.739 52.381 0.00 0.00 0.00 4.35
165 166 1.002792 GCCGAAAAACAGTCCAGTCAC 60.003 52.381 0.00 0.00 0.00 3.67
166 167 1.305201 GCCGAAAAACAGTCCAGTCA 58.695 50.000 0.00 0.00 0.00 3.41
167 168 0.234884 CGCCGAAAAACAGTCCAGTC 59.765 55.000 0.00 0.00 0.00 3.51
168 169 1.782028 GCGCCGAAAAACAGTCCAGT 61.782 55.000 0.00 0.00 0.00 4.00
169 170 1.082104 GCGCCGAAAAACAGTCCAG 60.082 57.895 0.00 0.00 0.00 3.86
170 171 2.548295 GGCGCCGAAAAACAGTCCA 61.548 57.895 12.58 0.00 0.00 4.02
171 172 2.254350 GGCGCCGAAAAACAGTCC 59.746 61.111 12.58 0.00 0.00 3.85
172 173 2.127383 CGGCGCCGAAAAACAGTC 60.127 61.111 44.86 1.62 42.83 3.51
203 204 0.460987 CCCAATGCGTCCTCTCAGAC 60.461 60.000 0.00 0.00 0.00 3.51
204 205 0.614697 TCCCAATGCGTCCTCTCAGA 60.615 55.000 0.00 0.00 0.00 3.27
205 206 0.179089 CTCCCAATGCGTCCTCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
206 207 0.904865 ACTCCCAATGCGTCCTCTCA 60.905 55.000 0.00 0.00 0.00 3.27
207 208 1.112113 TACTCCCAATGCGTCCTCTC 58.888 55.000 0.00 0.00 0.00 3.20
208 209 1.414181 CATACTCCCAATGCGTCCTCT 59.586 52.381 0.00 0.00 0.00 3.69
209 210 1.541233 CCATACTCCCAATGCGTCCTC 60.541 57.143 0.00 0.00 0.00 3.71
210 211 0.469917 CCATACTCCCAATGCGTCCT 59.530 55.000 0.00 0.00 0.00 3.85
211 212 1.166531 GCCATACTCCCAATGCGTCC 61.167 60.000 0.00 0.00 0.00 4.79
212 213 0.179045 AGCCATACTCCCAATGCGTC 60.179 55.000 0.00 0.00 0.00 5.19
213 214 0.464373 CAGCCATACTCCCAATGCGT 60.464 55.000 0.00 0.00 0.00 5.24
214 215 1.168407 CCAGCCATACTCCCAATGCG 61.168 60.000 0.00 0.00 0.00 4.73
215 216 0.183492 TCCAGCCATACTCCCAATGC 59.817 55.000 0.00 0.00 0.00 3.56
216 217 1.770658 TCTCCAGCCATACTCCCAATG 59.229 52.381 0.00 0.00 0.00 2.82
217 218 2.196742 TCTCCAGCCATACTCCCAAT 57.803 50.000 0.00 0.00 0.00 3.16
218 219 1.770658 CATCTCCAGCCATACTCCCAA 59.229 52.381 0.00 0.00 0.00 4.12
219 220 1.427809 CATCTCCAGCCATACTCCCA 58.572 55.000 0.00 0.00 0.00 4.37
220 221 0.036022 GCATCTCCAGCCATACTCCC 59.964 60.000 0.00 0.00 0.00 4.30
221 222 1.001860 GAGCATCTCCAGCCATACTCC 59.998 57.143 0.00 0.00 0.00 3.85
222 223 2.453983 GAGCATCTCCAGCCATACTC 57.546 55.000 0.00 0.00 0.00 2.59
238 239 1.520342 GGACCATCGTGCTCAGAGC 60.520 63.158 16.21 16.21 42.82 4.09
239 240 1.226802 CGGACCATCGTGCTCAGAG 60.227 63.158 0.00 0.00 0.00 3.35
240 241 2.885113 CGGACCATCGTGCTCAGA 59.115 61.111 0.00 0.00 0.00 3.27
241 242 2.887568 GCGGACCATCGTGCTCAG 60.888 66.667 0.00 0.00 0.00 3.35
242 243 4.451150 GGCGGACCATCGTGCTCA 62.451 66.667 0.00 0.00 35.26 4.26
243 244 3.665675 AAGGCGGACCATCGTGCTC 62.666 63.158 0.00 0.00 39.06 4.26
244 245 3.665675 GAAGGCGGACCATCGTGCT 62.666 63.158 0.00 0.00 39.06 4.40
245 246 2.292794 TAGAAGGCGGACCATCGTGC 62.293 60.000 0.00 0.00 38.74 5.34
246 247 0.174845 TTAGAAGGCGGACCATCGTG 59.825 55.000 0.00 0.00 38.74 4.35
247 248 1.120530 ATTAGAAGGCGGACCATCGT 58.879 50.000 0.00 0.00 38.74 3.73
248 249 1.502231 CATTAGAAGGCGGACCATCG 58.498 55.000 0.00 0.00 38.74 3.84
249 250 1.230324 GCATTAGAAGGCGGACCATC 58.770 55.000 0.00 0.00 39.06 3.51
250 251 0.179018 GGCATTAGAAGGCGGACCAT 60.179 55.000 0.00 0.00 39.06 3.55
251 252 1.223487 GGCATTAGAAGGCGGACCA 59.777 57.895 0.00 0.00 39.06 4.02
252 253 0.815615 CAGGCATTAGAAGGCGGACC 60.816 60.000 0.00 0.00 36.39 4.46
253 254 1.440145 GCAGGCATTAGAAGGCGGAC 61.440 60.000 0.00 0.00 36.39 4.79
254 255 1.153168 GCAGGCATTAGAAGGCGGA 60.153 57.895 0.00 0.00 36.39 5.54
255 256 1.451927 TGCAGGCATTAGAAGGCGG 60.452 57.895 0.00 0.00 36.39 6.13
256 257 1.718757 GGTGCAGGCATTAGAAGGCG 61.719 60.000 0.00 0.00 36.39 5.52
257 258 0.394899 AGGTGCAGGCATTAGAAGGC 60.395 55.000 0.00 0.00 34.45 4.35
258 259 1.386533 CAGGTGCAGGCATTAGAAGG 58.613 55.000 0.00 0.00 0.00 3.46
259 260 1.386533 CCAGGTGCAGGCATTAGAAG 58.613 55.000 0.00 0.00 0.00 2.85
260 261 0.034186 CCCAGGTGCAGGCATTAGAA 60.034 55.000 0.00 0.00 0.00 2.10
261 262 0.913934 TCCCAGGTGCAGGCATTAGA 60.914 55.000 0.00 0.00 0.00 2.10
262 263 0.034186 TTCCCAGGTGCAGGCATTAG 60.034 55.000 0.00 0.00 0.00 1.73
263 264 0.034186 CTTCCCAGGTGCAGGCATTA 60.034 55.000 0.00 0.00 0.00 1.90
264 265 1.304713 CTTCCCAGGTGCAGGCATT 60.305 57.895 0.00 0.00 0.00 3.56
269 270 1.280133 TCATCTTCTTCCCAGGTGCAG 59.720 52.381 0.00 0.00 0.00 4.41
281 282 7.037080 TGGCCCATTCTTATCATATCATCTTCT 60.037 37.037 0.00 0.00 0.00 2.85
284 285 6.012245 TGTGGCCCATTCTTATCATATCATCT 60.012 38.462 0.00 0.00 0.00 2.90
292 293 2.026729 TCGTTGTGGCCCATTCTTATCA 60.027 45.455 0.00 0.00 0.00 2.15
327 328 2.223572 GCCGCCAAAGTCATTTATCTGG 60.224 50.000 0.00 0.00 0.00 3.86
363 372 2.672714 GTTCCATTCCTTTCGCCAAAC 58.327 47.619 0.00 0.00 0.00 2.93
434 446 1.591594 CATCGTTATCCAGCGGCGT 60.592 57.895 9.37 0.00 0.00 5.68
493 506 1.806542 GCTCGGAACAAATCTGCTTCA 59.193 47.619 0.00 0.00 34.15 3.02
497 510 0.449388 CCAGCTCGGAACAAATCTGC 59.551 55.000 0.00 0.00 36.56 4.26
505 518 2.047179 GGTCCACCAGCTCGGAAC 60.047 66.667 8.91 2.70 38.63 3.62
515 528 1.388837 AAACGTTTGCAGGGTCCACC 61.389 55.000 13.81 0.00 40.67 4.61
516 529 0.030235 GAAACGTTTGCAGGGTCCAC 59.970 55.000 20.10 0.00 0.00 4.02
517 530 0.106918 AGAAACGTTTGCAGGGTCCA 60.107 50.000 20.10 0.00 0.00 4.02
518 531 1.886886 TAGAAACGTTTGCAGGGTCC 58.113 50.000 20.10 0.78 0.00 4.46
538 551 6.969993 GGAAGCTTCCCGATAGATAGATAT 57.030 41.667 31.91 0.00 41.62 1.63
560 573 4.876679 TCGAAGACAGAGTCTACATACTGG 59.123 45.833 0.00 0.00 42.59 4.00
561 574 6.426327 CATCGAAGACAGAGTCTACATACTG 58.574 44.000 0.00 0.00 42.59 2.74
647 660 2.240279 GGTACCTCCGTAGCATCTGAT 58.760 52.381 4.06 0.00 41.65 2.90
648 661 1.688772 GGTACCTCCGTAGCATCTGA 58.311 55.000 4.06 0.00 41.65 3.27
659 672 0.317352 GCGTCGTTATCGGTACCTCC 60.317 60.000 10.90 0.00 37.69 4.30
662 675 0.659957 AGAGCGTCGTTATCGGTACC 59.340 55.000 0.16 0.16 39.08 3.34
749 989 1.672145 GCTAGTGGAGTGGTTTCCGTC 60.672 57.143 0.00 0.00 40.27 4.79
817 1057 0.033504 ACTGCTACAACAGACACCGG 59.966 55.000 0.00 0.00 40.25 5.28
818 1058 2.030185 AGTACTGCTACAACAGACACCG 60.030 50.000 0.00 0.00 40.25 4.94
819 1059 3.662247 AGTACTGCTACAACAGACACC 57.338 47.619 0.00 0.00 40.25 4.16
820 1060 5.373981 ACTAGTACTGCTACAACAGACAC 57.626 43.478 5.39 0.00 40.25 3.67
821 1061 5.413833 GGTACTAGTACTGCTACAACAGACA 59.586 44.000 27.71 0.00 40.25 3.41
822 1062 5.647225 AGGTACTAGTACTGCTACAACAGAC 59.353 44.000 27.71 10.12 36.91 3.51
853 1100 3.088532 TGCTTGACTTTGTTTGGACAGT 58.911 40.909 0.00 0.00 37.04 3.55
854 1101 3.129287 AGTGCTTGACTTTGTTTGGACAG 59.871 43.478 0.00 0.00 37.04 3.51
855 1102 3.088532 AGTGCTTGACTTTGTTTGGACA 58.911 40.909 0.00 0.00 0.00 4.02
944 1191 3.428589 GCGAATGGTACCGAAGAGTAGTT 60.429 47.826 7.57 0.00 0.00 2.24
968 1215 6.144724 GGATCGAATAGACAAGAATGTGTAGC 59.855 42.308 0.00 0.00 40.74 3.58
1004 1275 7.013823 AGGATGATCAACTTCTTCTTGAGAA 57.986 36.000 0.00 0.00 42.03 2.87
1046 1319 1.453669 GCCATCAGAGACCCCATCC 59.546 63.158 0.00 0.00 0.00 3.51
1090 1363 0.442310 CGCGTACCTTTGGTGTCATG 59.558 55.000 0.00 0.00 36.19 3.07
1112 1389 1.663388 TAAGTGGAGCGTGCGTGTG 60.663 57.895 0.00 0.00 0.00 3.82
1117 1394 0.951040 AAGCAGTAAGTGGAGCGTGC 60.951 55.000 0.00 0.00 0.00 5.34
1122 1399 1.160137 GGTGCAAGCAGTAAGTGGAG 58.840 55.000 0.00 0.00 0.00 3.86
1140 1417 4.151512 GCAACCGAAAAACATAAACATGGG 59.848 41.667 0.00 0.00 0.00 4.00
1158 1435 1.266718 TGACGATCAAAGCAAGCAACC 59.733 47.619 0.00 0.00 0.00 3.77
1192 1472 9.139174 GCTGCTTACACACACATAATTATTTTT 57.861 29.630 0.00 0.00 0.00 1.94
1193 1473 8.522830 AGCTGCTTACACACACATAATTATTTT 58.477 29.630 0.00 0.00 0.00 1.82
1194 1474 8.055279 AGCTGCTTACACACACATAATTATTT 57.945 30.769 0.00 0.00 0.00 1.40
1195 1475 7.465916 CGAGCTGCTTACACACACATAATTATT 60.466 37.037 2.53 0.00 0.00 1.40
1196 1476 6.018751 CGAGCTGCTTACACACACATAATTAT 60.019 38.462 2.53 0.00 0.00 1.28
1197 1477 5.290885 CGAGCTGCTTACACACACATAATTA 59.709 40.000 2.53 0.00 0.00 1.40
1198 1478 4.093408 CGAGCTGCTTACACACACATAATT 59.907 41.667 2.53 0.00 0.00 1.40
1199 1479 3.618594 CGAGCTGCTTACACACACATAAT 59.381 43.478 2.53 0.00 0.00 1.28
1200 1480 2.993220 CGAGCTGCTTACACACACATAA 59.007 45.455 2.53 0.00 0.00 1.90
1201 1481 2.029380 ACGAGCTGCTTACACACACATA 60.029 45.455 2.53 0.00 0.00 2.29
1202 1482 1.270305 ACGAGCTGCTTACACACACAT 60.270 47.619 2.53 0.00 0.00 3.21
1246 1526 2.371259 GGCCTCCACCTCCTCCTTC 61.371 68.421 0.00 0.00 0.00 3.46
1316 1623 1.950748 ATAGGTCGACCAGGGGAGCT 61.951 60.000 35.00 15.20 42.96 4.09
1360 1667 2.508887 CTGCTCCTCTGCGTCTGC 60.509 66.667 0.00 0.00 43.20 4.26
1361 1668 2.183811 CCTGCTCCTCTGCGTCTG 59.816 66.667 0.00 0.00 35.36 3.51
1362 1669 2.283532 ACCTGCTCCTCTGCGTCT 60.284 61.111 0.00 0.00 35.36 4.18
1363 1670 2.183046 GACCTGCTCCTCTGCGTC 59.817 66.667 0.00 0.00 35.36 5.19
1364 1671 2.601666 TGACCTGCTCCTCTGCGT 60.602 61.111 0.00 0.00 35.36 5.24
1511 1829 6.759497 TCAAGATCAAGATCAGACGAACTA 57.241 37.500 12.21 0.00 40.22 2.24
1519 1837 9.217278 CCCTTAACATATCAAGATCAAGATCAG 57.783 37.037 12.21 4.84 40.22 2.90
1520 1838 7.663081 GCCCTTAACATATCAAGATCAAGATCA 59.337 37.037 12.21 0.00 40.22 2.92
1532 1850 7.833682 TGAATCAAAGAAGCCCTTAACATATCA 59.166 33.333 0.00 0.00 34.00 2.15
1533 1851 8.225603 TGAATCAAAGAAGCCCTTAACATATC 57.774 34.615 0.00 0.00 34.00 1.63
1534 1852 8.593945 TTGAATCAAAGAAGCCCTTAACATAT 57.406 30.769 0.00 0.00 34.00 1.78
1535 1853 8.415950 TTTGAATCAAAGAAGCCCTTAACATA 57.584 30.769 4.03 0.00 34.00 2.29
1536 1854 6.916360 TTGAATCAAAGAAGCCCTTAACAT 57.084 33.333 0.00 0.00 34.00 2.71
1537 1855 6.723298 TTTGAATCAAAGAAGCCCTTAACA 57.277 33.333 4.03 0.00 34.00 2.41
1550 1868 7.016465 AGTCCCATGAAATTCCTTTGAATCAAA 59.984 33.333 8.25 8.25 40.34 2.69
1551 1869 6.497954 AGTCCCATGAAATTCCTTTGAATCAA 59.502 34.615 0.00 0.00 40.34 2.57
1552 1870 6.018469 AGTCCCATGAAATTCCTTTGAATCA 58.982 36.000 0.00 0.00 40.34 2.57
1553 1871 6.535963 AGTCCCATGAAATTCCTTTGAATC 57.464 37.500 0.00 0.00 40.34 2.52
1554 1872 6.940430 AAGTCCCATGAAATTCCTTTGAAT 57.060 33.333 0.00 0.00 43.08 2.57
1555 1873 6.745794 AAAGTCCCATGAAATTCCTTTGAA 57.254 33.333 0.00 0.00 34.33 2.69
1556 1874 6.464180 CCAAAAGTCCCATGAAATTCCTTTGA 60.464 38.462 0.00 0.00 0.00 2.69
1557 1875 5.702209 CCAAAAGTCCCATGAAATTCCTTTG 59.298 40.000 0.00 0.00 0.00 2.77
1558 1876 5.606329 TCCAAAAGTCCCATGAAATTCCTTT 59.394 36.000 0.00 0.00 0.00 3.11
1559 1877 5.154418 TCCAAAAGTCCCATGAAATTCCTT 58.846 37.500 0.00 0.00 0.00 3.36
1560 1878 4.750941 TCCAAAAGTCCCATGAAATTCCT 58.249 39.130 0.00 0.00 0.00 3.36
1561 1879 4.081476 CCTCCAAAAGTCCCATGAAATTCC 60.081 45.833 0.00 0.00 0.00 3.01
1562 1880 4.081476 CCCTCCAAAAGTCCCATGAAATTC 60.081 45.833 0.00 0.00 0.00 2.17
1563 1881 3.840078 CCCTCCAAAAGTCCCATGAAATT 59.160 43.478 0.00 0.00 0.00 1.82
1564 1882 3.181407 ACCCTCCAAAAGTCCCATGAAAT 60.181 43.478 0.00 0.00 0.00 2.17
1565 1883 2.178984 ACCCTCCAAAAGTCCCATGAAA 59.821 45.455 0.00 0.00 0.00 2.69
1566 1884 1.786441 ACCCTCCAAAAGTCCCATGAA 59.214 47.619 0.00 0.00 0.00 2.57
1567 1885 1.455822 ACCCTCCAAAAGTCCCATGA 58.544 50.000 0.00 0.00 0.00 3.07
1568 1886 2.309136 AACCCTCCAAAAGTCCCATG 57.691 50.000 0.00 0.00 0.00 3.66
1569 1887 3.265489 TCTAACCCTCCAAAAGTCCCAT 58.735 45.455 0.00 0.00 0.00 4.00
1570 1888 2.708759 TCTAACCCTCCAAAAGTCCCA 58.291 47.619 0.00 0.00 0.00 4.37
1571 1889 3.801307 TTCTAACCCTCCAAAAGTCCC 57.199 47.619 0.00 0.00 0.00 4.46
1572 1890 4.018324 AGGATTCTAACCCTCCAAAAGTCC 60.018 45.833 0.00 0.00 0.00 3.85
1573 1891 5.180810 AGGATTCTAACCCTCCAAAAGTC 57.819 43.478 0.00 0.00 0.00 3.01
1574 1892 5.600669 AAGGATTCTAACCCTCCAAAAGT 57.399 39.130 0.00 0.00 31.17 2.66
1575 1893 6.069615 TCCTAAGGATTCTAACCCTCCAAAAG 60.070 42.308 0.00 0.00 31.17 2.27
1576 1894 5.793763 TCCTAAGGATTCTAACCCTCCAAAA 59.206 40.000 0.00 0.00 31.17 2.44
1577 1895 5.355711 TCCTAAGGATTCTAACCCTCCAAA 58.644 41.667 0.00 0.00 31.17 3.28
1578 1896 4.967871 TCCTAAGGATTCTAACCCTCCAA 58.032 43.478 0.00 0.00 31.17 3.53
1579 1897 4.637288 TCCTAAGGATTCTAACCCTCCA 57.363 45.455 0.00 0.00 31.17 3.86
1591 1909 9.190317 GACAAATGTAGGAAAAATCCTAAGGAT 57.810 33.333 6.18 0.00 45.46 3.24
1592 1910 7.335924 CGACAAATGTAGGAAAAATCCTAAGGA 59.664 37.037 6.18 0.00 43.32 3.36
1593 1911 7.120726 ACGACAAATGTAGGAAAAATCCTAAGG 59.879 37.037 6.18 0.00 43.32 2.69
1594 1912 8.040716 ACGACAAATGTAGGAAAAATCCTAAG 57.959 34.615 6.18 0.00 43.32 2.18
1595 1913 7.989416 ACGACAAATGTAGGAAAAATCCTAA 57.011 32.000 6.18 0.00 43.32 2.69
1596 1914 7.989416 AACGACAAATGTAGGAAAAATCCTA 57.011 32.000 0.44 0.44 41.12 2.94
1597 1915 6.894339 AACGACAAATGTAGGAAAAATCCT 57.106 33.333 2.51 2.51 43.62 3.24
1598 1916 7.142680 TCAAACGACAAATGTAGGAAAAATCC 58.857 34.615 0.00 0.00 0.00 3.01
1599 1917 8.742554 ATCAAACGACAAATGTAGGAAAAATC 57.257 30.769 0.00 0.00 0.00 2.17
1600 1918 9.191995 GAATCAAACGACAAATGTAGGAAAAAT 57.808 29.630 0.00 0.00 0.00 1.82
1601 1919 8.191446 TGAATCAAACGACAAATGTAGGAAAAA 58.809 29.630 0.00 0.00 0.00 1.94
1602 1920 7.646130 GTGAATCAAACGACAAATGTAGGAAAA 59.354 33.333 0.00 0.00 0.00 2.29
1603 1921 7.136119 GTGAATCAAACGACAAATGTAGGAAA 58.864 34.615 0.00 0.00 0.00 3.13
1604 1922 6.261158 TGTGAATCAAACGACAAATGTAGGAA 59.739 34.615 0.00 0.00 0.00 3.36
1605 1923 5.760743 TGTGAATCAAACGACAAATGTAGGA 59.239 36.000 0.00 0.00 0.00 2.94
1606 1924 5.996219 TGTGAATCAAACGACAAATGTAGG 58.004 37.500 0.00 0.00 0.00 3.18
1607 1925 6.073276 TCCTGTGAATCAAACGACAAATGTAG 60.073 38.462 0.00 0.00 0.00 2.74
1608 1926 5.760743 TCCTGTGAATCAAACGACAAATGTA 59.239 36.000 0.00 0.00 0.00 2.29
1609 1927 4.578516 TCCTGTGAATCAAACGACAAATGT 59.421 37.500 0.00 0.00 0.00 2.71
1610 1928 5.107109 TCCTGTGAATCAAACGACAAATG 57.893 39.130 0.00 0.00 0.00 2.32
1611 1929 5.964958 ATCCTGTGAATCAAACGACAAAT 57.035 34.783 0.00 0.00 0.00 2.32
1612 1930 5.298026 TCAATCCTGTGAATCAAACGACAAA 59.702 36.000 0.00 0.00 0.00 2.83
1613 1931 4.819088 TCAATCCTGTGAATCAAACGACAA 59.181 37.500 0.00 0.00 0.00 3.18
1614 1932 4.384940 TCAATCCTGTGAATCAAACGACA 58.615 39.130 0.00 0.00 0.00 4.35
1615 1933 5.356882 TTCAATCCTGTGAATCAAACGAC 57.643 39.130 0.00 0.00 32.56 4.34
1654 1972 9.817809 GAAATGTAGTACACTTGATTCCATAGA 57.182 33.333 4.80 0.00 0.00 1.98
1655 1973 9.599866 TGAAATGTAGTACACTTGATTCCATAG 57.400 33.333 4.80 0.00 0.00 2.23
1657 1975 9.466497 AATGAAATGTAGTACACTTGATTCCAT 57.534 29.630 4.80 0.00 0.00 3.41
1658 1976 8.729756 CAATGAAATGTAGTACACTTGATTCCA 58.270 33.333 4.80 0.00 0.00 3.53
1659 1977 8.946085 TCAATGAAATGTAGTACACTTGATTCC 58.054 33.333 4.80 0.00 0.00 3.01
1672 1990 9.674824 GGATGCTAGATTTTCAATGAAATGTAG 57.325 33.333 9.41 11.76 41.85 2.74
1673 1991 9.187996 TGGATGCTAGATTTTCAATGAAATGTA 57.812 29.630 9.41 0.00 31.34 2.29
1674 1992 7.977853 GTGGATGCTAGATTTTCAATGAAATGT 59.022 33.333 9.41 1.73 31.34 2.71
1675 1993 8.195436 AGTGGATGCTAGATTTTCAATGAAATG 58.805 33.333 9.41 0.20 31.34 2.32
1676 1994 8.302515 AGTGGATGCTAGATTTTCAATGAAAT 57.697 30.769 9.41 0.22 31.34 2.17
1677 1995 7.613022 AGAGTGGATGCTAGATTTTCAATGAAA 59.387 33.333 4.03 4.03 0.00 2.69
1678 1996 7.114754 AGAGTGGATGCTAGATTTTCAATGAA 58.885 34.615 0.00 0.00 0.00 2.57
1679 1997 6.656902 AGAGTGGATGCTAGATTTTCAATGA 58.343 36.000 0.00 0.00 0.00 2.57
1680 1998 6.939132 AGAGTGGATGCTAGATTTTCAATG 57.061 37.500 0.00 0.00 0.00 2.82
1681 1999 7.500559 GGTTAGAGTGGATGCTAGATTTTCAAT 59.499 37.037 0.00 0.00 0.00 2.57
1682 2000 6.823689 GGTTAGAGTGGATGCTAGATTTTCAA 59.176 38.462 0.00 0.00 0.00 2.69
1683 2001 6.156949 AGGTTAGAGTGGATGCTAGATTTTCA 59.843 38.462 0.00 0.00 0.00 2.69
1684 2002 6.587273 AGGTTAGAGTGGATGCTAGATTTTC 58.413 40.000 0.00 0.00 0.00 2.29
1685 2003 6.567602 AGGTTAGAGTGGATGCTAGATTTT 57.432 37.500 0.00 0.00 0.00 1.82
1686 2004 6.567602 AAGGTTAGAGTGGATGCTAGATTT 57.432 37.500 0.00 0.00 0.00 2.17
1687 2005 6.567602 AAAGGTTAGAGTGGATGCTAGATT 57.432 37.500 0.00 0.00 0.00 2.40
1688 2006 6.567602 AAAAGGTTAGAGTGGATGCTAGAT 57.432 37.500 0.00 0.00 0.00 1.98
1689 2007 6.374417 AAAAAGGTTAGAGTGGATGCTAGA 57.626 37.500 0.00 0.00 0.00 2.43
1713 2031 9.705290 GCTACAGGAAAAATAAAGGAATTGAAA 57.295 29.630 0.00 0.00 0.00 2.69
1714 2032 8.026607 CGCTACAGGAAAAATAAAGGAATTGAA 58.973 33.333 0.00 0.00 0.00 2.69
1715 2033 7.175990 ACGCTACAGGAAAAATAAAGGAATTGA 59.824 33.333 0.00 0.00 0.00 2.57
1716 2034 7.312899 ACGCTACAGGAAAAATAAAGGAATTG 58.687 34.615 0.00 0.00 0.00 2.32
1717 2035 7.175990 TGACGCTACAGGAAAAATAAAGGAATT 59.824 33.333 0.00 0.00 0.00 2.17
1718 2036 6.657541 TGACGCTACAGGAAAAATAAAGGAAT 59.342 34.615 0.00 0.00 0.00 3.01
1719 2037 5.998981 TGACGCTACAGGAAAAATAAAGGAA 59.001 36.000 0.00 0.00 0.00 3.36
1720 2038 5.553123 TGACGCTACAGGAAAAATAAAGGA 58.447 37.500 0.00 0.00 0.00 3.36
1721 2039 5.873179 TGACGCTACAGGAAAAATAAAGG 57.127 39.130 0.00 0.00 0.00 3.11
1722 2040 7.112984 GTGTTTGACGCTACAGGAAAAATAAAG 59.887 37.037 0.00 0.00 0.00 1.85
1723 2041 6.913673 GTGTTTGACGCTACAGGAAAAATAAA 59.086 34.615 0.00 0.00 0.00 1.40
1724 2042 6.261381 AGTGTTTGACGCTACAGGAAAAATAA 59.739 34.615 0.00 0.00 37.15 1.40
1725 2043 5.761234 AGTGTTTGACGCTACAGGAAAAATA 59.239 36.000 0.00 0.00 37.15 1.40
1726 2044 4.578928 AGTGTTTGACGCTACAGGAAAAAT 59.421 37.500 0.00 0.00 37.15 1.82
1727 2045 3.942748 AGTGTTTGACGCTACAGGAAAAA 59.057 39.130 0.00 0.00 37.15 1.94
1728 2046 3.537580 AGTGTTTGACGCTACAGGAAAA 58.462 40.909 0.00 0.00 37.15 2.29
1729 2047 3.128349 GAGTGTTTGACGCTACAGGAAA 58.872 45.455 0.00 0.00 39.36 3.13
1730 2048 2.364324 AGAGTGTTTGACGCTACAGGAA 59.636 45.455 0.00 0.00 39.36 3.36
1731 2049 1.961394 AGAGTGTTTGACGCTACAGGA 59.039 47.619 0.00 0.00 39.36 3.86
1732 2050 2.440539 AGAGTGTTTGACGCTACAGG 57.559 50.000 0.00 0.00 39.36 4.00
1733 2051 4.106197 GGATAGAGTGTTTGACGCTACAG 58.894 47.826 0.00 0.00 39.48 2.74
1734 2052 3.762288 AGGATAGAGTGTTTGACGCTACA 59.238 43.478 0.00 0.00 39.48 2.74
1735 2053 4.373348 AGGATAGAGTGTTTGACGCTAC 57.627 45.455 0.00 0.00 39.48 3.58
1736 2054 6.238953 GGATTAGGATAGAGTGTTTGACGCTA 60.239 42.308 0.00 0.00 39.36 4.26
1737 2055 5.452077 GGATTAGGATAGAGTGTTTGACGCT 60.452 44.000 0.00 0.00 42.43 5.07
1738 2056 4.745620 GGATTAGGATAGAGTGTTTGACGC 59.254 45.833 0.00 0.00 0.00 5.19
1739 2057 6.150396 AGGATTAGGATAGAGTGTTTGACG 57.850 41.667 0.00 0.00 0.00 4.35
1758 2076 8.800332 GGCATGTTCATTTGAATTCTATAGGAT 58.200 33.333 7.05 0.00 36.33 3.24
1759 2077 7.779326 TGGCATGTTCATTTGAATTCTATAGGA 59.221 33.333 7.05 0.00 36.33 2.94
1760 2078 7.864379 GTGGCATGTTCATTTGAATTCTATAGG 59.136 37.037 7.05 0.00 36.33 2.57
1761 2079 8.627403 AGTGGCATGTTCATTTGAATTCTATAG 58.373 33.333 7.05 0.00 36.33 1.31
1762 2080 8.523915 AGTGGCATGTTCATTTGAATTCTATA 57.476 30.769 7.05 0.00 36.33 1.31
1763 2081 7.123098 TGAGTGGCATGTTCATTTGAATTCTAT 59.877 33.333 7.05 0.00 36.33 1.98
1764 2082 6.433716 TGAGTGGCATGTTCATTTGAATTCTA 59.566 34.615 7.05 0.00 36.33 2.10
1765 2083 5.244402 TGAGTGGCATGTTCATTTGAATTCT 59.756 36.000 7.05 0.00 36.33 2.40
1766 2084 5.472148 TGAGTGGCATGTTCATTTGAATTC 58.528 37.500 0.00 0.00 36.33 2.17
1767 2085 5.471556 TGAGTGGCATGTTCATTTGAATT 57.528 34.783 0.00 0.00 36.33 2.17
1768 2086 5.471556 TTGAGTGGCATGTTCATTTGAAT 57.528 34.783 0.00 0.00 36.33 2.57
1769 2087 4.933505 TTGAGTGGCATGTTCATTTGAA 57.066 36.364 0.00 0.00 0.00 2.69
1770 2088 4.933505 TTTGAGTGGCATGTTCATTTGA 57.066 36.364 0.00 0.00 0.00 2.69
1771 2089 4.628333 GGATTTGAGTGGCATGTTCATTTG 59.372 41.667 0.00 0.00 0.00 2.32
1772 2090 4.529377 AGGATTTGAGTGGCATGTTCATTT 59.471 37.500 0.00 0.00 0.00 2.32
1773 2091 4.081862 CAGGATTTGAGTGGCATGTTCATT 60.082 41.667 0.00 0.00 0.00 2.57
1774 2092 3.446161 CAGGATTTGAGTGGCATGTTCAT 59.554 43.478 0.00 0.00 0.00 2.57
1775 2093 2.821378 CAGGATTTGAGTGGCATGTTCA 59.179 45.455 0.00 0.00 0.00 3.18
1776 2094 2.821969 ACAGGATTTGAGTGGCATGTTC 59.178 45.455 0.00 0.00 0.00 3.18
1777 2095 2.880443 ACAGGATTTGAGTGGCATGTT 58.120 42.857 0.00 0.00 0.00 2.71
1778 2096 2.592102 ACAGGATTTGAGTGGCATGT 57.408 45.000 0.00 0.00 0.00 3.21
1779 2097 5.587388 AAATACAGGATTTGAGTGGCATG 57.413 39.130 0.00 0.00 36.35 4.06
1780 2098 5.954150 AGAAAATACAGGATTTGAGTGGCAT 59.046 36.000 0.00 0.00 37.82 4.40
1781 2099 5.324409 AGAAAATACAGGATTTGAGTGGCA 58.676 37.500 0.00 0.00 37.82 4.92
1782 2100 5.649831 AGAGAAAATACAGGATTTGAGTGGC 59.350 40.000 0.00 0.00 37.82 5.01
1783 2101 8.970859 ATAGAGAAAATACAGGATTTGAGTGG 57.029 34.615 0.00 0.00 37.82 4.00
1785 2103 9.620259 GGAATAGAGAAAATACAGGATTTGAGT 57.380 33.333 0.00 0.00 37.82 3.41
1786 2104 9.061435 GGGAATAGAGAAAATACAGGATTTGAG 57.939 37.037 0.00 0.00 37.82 3.02
1787 2105 8.556589 TGGGAATAGAGAAAATACAGGATTTGA 58.443 33.333 0.00 0.00 37.82 2.69
1788 2106 8.624776 GTGGGAATAGAGAAAATACAGGATTTG 58.375 37.037 0.00 0.00 37.82 2.32
1789 2107 7.499232 CGTGGGAATAGAGAAAATACAGGATTT 59.501 37.037 0.00 0.00 39.56 2.17
1790 2108 6.992715 CGTGGGAATAGAGAAAATACAGGATT 59.007 38.462 0.00 0.00 0.00 3.01
1791 2109 6.099845 ACGTGGGAATAGAGAAAATACAGGAT 59.900 38.462 0.00 0.00 0.00 3.24
1792 2110 5.424252 ACGTGGGAATAGAGAAAATACAGGA 59.576 40.000 0.00 0.00 0.00 3.86
1793 2111 5.671493 ACGTGGGAATAGAGAAAATACAGG 58.329 41.667 0.00 0.00 0.00 4.00
1794 2112 7.464178 CGAAACGTGGGAATAGAGAAAATACAG 60.464 40.741 0.00 0.00 0.00 2.74
1795 2113 6.311935 CGAAACGTGGGAATAGAGAAAATACA 59.688 38.462 0.00 0.00 0.00 2.29
1796 2114 6.532657 TCGAAACGTGGGAATAGAGAAAATAC 59.467 38.462 0.00 0.00 0.00 1.89
1797 2115 6.632909 TCGAAACGTGGGAATAGAGAAAATA 58.367 36.000 0.00 0.00 0.00 1.40
1798 2116 5.484715 TCGAAACGTGGGAATAGAGAAAAT 58.515 37.500 0.00 0.00 0.00 1.82
1799 2117 4.885413 TCGAAACGTGGGAATAGAGAAAA 58.115 39.130 0.00 0.00 0.00 2.29
1800 2118 4.524316 TCGAAACGTGGGAATAGAGAAA 57.476 40.909 0.00 0.00 0.00 2.52
1801 2119 4.524316 TTCGAAACGTGGGAATAGAGAA 57.476 40.909 0.00 0.00 0.00 2.87
1802 2120 4.524316 TTTCGAAACGTGGGAATAGAGA 57.476 40.909 6.47 0.00 0.00 3.10
1803 2121 5.220605 GGATTTTCGAAACGTGGGAATAGAG 60.221 44.000 10.79 0.00 0.00 2.43
1804 2122 4.632688 GGATTTTCGAAACGTGGGAATAGA 59.367 41.667 10.79 0.00 0.00 1.98
1805 2123 4.634443 AGGATTTTCGAAACGTGGGAATAG 59.366 41.667 10.79 0.00 0.00 1.73
1806 2124 4.393680 CAGGATTTTCGAAACGTGGGAATA 59.606 41.667 10.79 0.00 0.00 1.75
1807 2125 3.190535 CAGGATTTTCGAAACGTGGGAAT 59.809 43.478 10.79 0.00 0.00 3.01
1808 2126 2.550606 CAGGATTTTCGAAACGTGGGAA 59.449 45.455 10.79 0.00 0.00 3.97
1809 2127 2.147958 CAGGATTTTCGAAACGTGGGA 58.852 47.619 10.79 0.00 0.00 4.37
1810 2128 1.401018 GCAGGATTTTCGAAACGTGGG 60.401 52.381 10.79 2.03 0.00 4.61
1811 2129 1.265635 TGCAGGATTTTCGAAACGTGG 59.734 47.619 10.79 0.94 0.00 4.94
1812 2130 2.679355 TGCAGGATTTTCGAAACGTG 57.321 45.000 10.79 12.65 0.00 4.49
1813 2131 3.701532 TTTGCAGGATTTTCGAAACGT 57.298 38.095 10.79 2.07 0.00 3.99
1814 2132 4.225984 TGATTTGCAGGATTTTCGAAACG 58.774 39.130 10.79 0.00 0.00 3.60
1815 2133 6.420604 TCTTTGATTTGCAGGATTTTCGAAAC 59.579 34.615 10.79 0.00 0.00 2.78
1816 2134 6.511416 TCTTTGATTTGCAGGATTTTCGAAA 58.489 32.000 6.47 6.47 0.00 3.46
1817 2135 6.083098 TCTTTGATTTGCAGGATTTTCGAA 57.917 33.333 0.00 0.00 0.00 3.71
1818 2136 5.335897 CCTCTTTGATTTGCAGGATTTTCGA 60.336 40.000 0.00 0.00 0.00 3.71
1819 2137 4.860907 CCTCTTTGATTTGCAGGATTTTCG 59.139 41.667 0.00 0.00 0.00 3.46
1820 2138 5.173664 CCCTCTTTGATTTGCAGGATTTTC 58.826 41.667 0.00 0.00 0.00 2.29
1821 2139 4.564199 GCCCTCTTTGATTTGCAGGATTTT 60.564 41.667 0.00 0.00 0.00 1.82
1822 2140 3.055602 GCCCTCTTTGATTTGCAGGATTT 60.056 43.478 0.00 0.00 0.00 2.17
1823 2141 2.498885 GCCCTCTTTGATTTGCAGGATT 59.501 45.455 0.00 0.00 0.00 3.01
1824 2142 2.105766 GCCCTCTTTGATTTGCAGGAT 58.894 47.619 0.00 0.00 0.00 3.24
1825 2143 1.549203 GCCCTCTTTGATTTGCAGGA 58.451 50.000 0.00 0.00 0.00 3.86
1826 2144 0.533951 GGCCCTCTTTGATTTGCAGG 59.466 55.000 0.00 0.00 0.00 4.85
1827 2145 1.553706 AGGCCCTCTTTGATTTGCAG 58.446 50.000 0.00 0.00 0.00 4.41
1828 2146 2.897271 TAGGCCCTCTTTGATTTGCA 57.103 45.000 0.00 0.00 0.00 4.08
1829 2147 4.403752 AGATTTAGGCCCTCTTTGATTTGC 59.596 41.667 0.00 0.00 0.00 3.68
1830 2148 6.535963 AAGATTTAGGCCCTCTTTGATTTG 57.464 37.500 0.00 0.00 0.00 2.32
1836 2154 6.464322 CCAAAACAAAGATTTAGGCCCTCTTT 60.464 38.462 0.00 6.76 39.23 2.52
1837 2155 5.012046 CCAAAACAAAGATTTAGGCCCTCTT 59.988 40.000 0.00 0.00 0.00 2.85
1838 2156 4.528206 CCAAAACAAAGATTTAGGCCCTCT 59.472 41.667 0.00 0.00 0.00 3.69
1839 2157 4.322725 CCCAAAACAAAGATTTAGGCCCTC 60.323 45.833 0.00 0.00 0.00 4.30
1840 2158 3.582647 CCCAAAACAAAGATTTAGGCCCT 59.417 43.478 0.00 0.00 0.00 5.19
1841 2159 3.326588 ACCCAAAACAAAGATTTAGGCCC 59.673 43.478 0.00 0.00 0.00 5.80
1842 2160 4.566004 GACCCAAAACAAAGATTTAGGCC 58.434 43.478 0.00 0.00 0.00 5.19
1843 2161 4.234574 CGACCCAAAACAAAGATTTAGGC 58.765 43.478 0.00 0.00 0.00 3.93
1844 2162 4.279922 ACCGACCCAAAACAAAGATTTAGG 59.720 41.667 0.00 0.00 0.00 2.69
1849 2167 1.960689 CCACCGACCCAAAACAAAGAT 59.039 47.619 0.00 0.00 0.00 2.40
1851 2169 0.387565 CCCACCGACCCAAAACAAAG 59.612 55.000 0.00 0.00 0.00 2.77
2080 2416 4.814967 ACCAATGGATATTTTACAGGGGG 58.185 43.478 6.16 0.00 0.00 5.40
2081 2417 6.369629 TGTACCAATGGATATTTTACAGGGG 58.630 40.000 6.16 0.00 0.00 4.79
2165 2521 5.934935 TCCTTTTGAAATTCACTCCGTAC 57.065 39.130 0.00 0.00 0.00 3.67
2193 2549 7.176165 GCCTAAAGTCCAAGTTAACCTGTAATT 59.824 37.037 0.88 0.00 0.00 1.40
2194 2550 6.657966 GCCTAAAGTCCAAGTTAACCTGTAAT 59.342 38.462 0.88 0.00 0.00 1.89
2195 2551 5.999600 GCCTAAAGTCCAAGTTAACCTGTAA 59.000 40.000 0.88 0.00 0.00 2.41
2196 2552 5.513614 GGCCTAAAGTCCAAGTTAACCTGTA 60.514 44.000 0.88 0.00 0.00 2.74
2197 2553 4.395625 GCCTAAAGTCCAAGTTAACCTGT 58.604 43.478 0.88 0.00 0.00 4.00
2198 2554 3.756963 GGCCTAAAGTCCAAGTTAACCTG 59.243 47.826 0.88 0.00 0.00 4.00
2199 2555 3.396611 TGGCCTAAAGTCCAAGTTAACCT 59.603 43.478 3.32 0.00 0.00 3.50
2200 2556 3.758425 TGGCCTAAAGTCCAAGTTAACC 58.242 45.455 3.32 0.00 0.00 2.85
2201 2557 4.825634 AGTTGGCCTAAAGTCCAAGTTAAC 59.174 41.667 3.32 0.00 41.80 2.01
2202 2558 5.056553 AGTTGGCCTAAAGTCCAAGTTAA 57.943 39.130 3.32 0.00 41.80 2.01
2203 2559 4.506095 GGAGTTGGCCTAAAGTCCAAGTTA 60.506 45.833 20.07 0.00 45.46 2.24
2204 2560 3.487372 GAGTTGGCCTAAAGTCCAAGTT 58.513 45.455 3.32 0.00 43.83 2.66
2205 2561 2.224793 GGAGTTGGCCTAAAGTCCAAGT 60.225 50.000 20.07 0.00 45.46 3.16
2206 2562 2.437413 GGAGTTGGCCTAAAGTCCAAG 58.563 52.381 20.07 0.00 45.46 3.61
2207 2563 2.579410 GGAGTTGGCCTAAAGTCCAA 57.421 50.000 20.07 0.00 45.46 3.53
2209 2565 1.351350 AGTGGAGTTGGCCTAAAGTCC 59.649 52.381 18.74 18.74 46.07 3.85
2210 2566 2.427506 CAGTGGAGTTGGCCTAAAGTC 58.572 52.381 3.32 2.89 0.00 3.01
2211 2567 1.545651 GCAGTGGAGTTGGCCTAAAGT 60.546 52.381 3.32 0.00 0.00 2.66
2229 2585 3.833645 AAGATAGGGTCGCGCGCA 61.834 61.111 32.61 15.73 0.00 6.09
2230 2586 3.330853 CAAGATAGGGTCGCGCGC 61.331 66.667 27.95 23.91 0.00 6.86
2261 2617 6.257193 CGCTATTAGTCCGTTTTACTCCAAAT 59.743 38.462 0.00 0.00 0.00 2.32
2279 2636 2.586635 CGTTGGGCCGCGCTATTA 60.587 61.111 5.56 0.00 0.00 0.98
2347 2704 2.975799 GCGCAACTTTGGGACCGA 60.976 61.111 0.30 0.00 43.04 4.69
2349 2706 2.954611 GAGCGCAACTTTGGGACC 59.045 61.111 11.47 0.00 43.04 4.46
2351 2708 2.668212 CCGAGCGCAACTTTGGGA 60.668 61.111 11.47 0.00 43.04 4.37
2446 2832 0.402121 AGAGAGGGTTGAAGGGTTGC 59.598 55.000 0.00 0.00 0.00 4.17
2451 2837 1.199615 GGGAGAGAGAGGGTTGAAGG 58.800 60.000 0.00 0.00 0.00 3.46
2494 2888 4.585526 CGGAGAATAGCGGCGGCA 62.586 66.667 19.21 4.99 43.41 5.69
2693 3090 2.282958 TCTGGAGCCGTCGGAAGT 60.283 61.111 17.49 0.00 0.00 3.01
2751 3152 0.323725 AAAAGGCCGCCATGATCACT 60.324 50.000 13.15 0.00 0.00 3.41
2821 3224 2.352912 GGAAGAAGAACTCGTCTCCACC 60.353 54.545 0.00 0.00 34.56 4.61
2866 3269 4.998788 TCTTCATCATCTGACGACGAATT 58.001 39.130 0.00 0.00 32.17 2.17
2877 3283 3.464907 CACCGCAAGATCTTCATCATCT 58.535 45.455 4.57 0.00 43.02 2.90
2966 3372 1.002134 CGGTTCAGGTTGGGAGCAT 60.002 57.895 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.