Multiple sequence alignment - TraesCS5B01G502600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G502600 chr5B 100.000 4717 0 0 1 4717 669669244 669673960 0.000000e+00 8711.0
1 TraesCS5B01G502600 chr5B 91.358 81 7 0 2607 2687 669671940 669672020 1.390000e-20 111.0
2 TraesCS5B01G502600 chr5D 87.657 1669 131 34 2364 3988 530426393 530428030 0.000000e+00 1871.0
3 TraesCS5B01G502600 chr5D 90.742 1199 80 14 761 1942 530424481 530425665 0.000000e+00 1570.0
4 TraesCS5B01G502600 chr5D 83.962 424 56 10 1950 2364 530425905 530426325 3.420000e-106 396.0
5 TraesCS5B01G502600 chr5D 96.429 112 3 1 4601 4711 530428482 530428593 2.900000e-42 183.0
6 TraesCS5B01G502600 chr5D 94.048 84 5 0 2697 2780 530426636 530426719 1.380000e-25 128.0
7 TraesCS5B01G502600 chr5D 91.566 83 7 0 2605 2687 530426724 530426806 1.070000e-21 115.0
8 TraesCS5B01G502600 chr2B 88.396 1465 115 27 2380 3811 141563061 141564503 0.000000e+00 1712.0
9 TraesCS5B01G502600 chr2B 89.066 1317 98 25 794 2094 141559099 141560385 0.000000e+00 1592.0
10 TraesCS5B01G502600 chr2B 90.873 504 41 3 3611 4112 141564402 141564902 0.000000e+00 671.0
11 TraesCS5B01G502600 chr2B 87.923 207 23 2 4229 4434 141564906 141565111 4.720000e-60 243.0
12 TraesCS5B01G502600 chr2B 92.683 82 6 0 2606 2687 141563378 141563459 8.290000e-23 119.0
13 TraesCS5B01G502600 chr2B 82.927 82 13 1 1608 1689 141563375 141563455 6.550000e-09 73.1
14 TraesCS5B01G502600 chr2B 93.617 47 3 0 621 667 770578483 770578437 2.350000e-08 71.3
15 TraesCS5B01G502600 chr2A 89.362 1316 92 26 794 2094 88661936 88663218 0.000000e+00 1611.0
16 TraesCS5B01G502600 chr2A 87.288 944 82 16 2882 3811 88670294 88671213 0.000000e+00 1044.0
17 TraesCS5B01G502600 chr2A 90.365 602 55 3 2 602 38589376 38589975 0.000000e+00 787.0
18 TraesCS5B01G502600 chr2A 91.535 508 36 6 97 601 38349222 38348719 0.000000e+00 693.0
19 TraesCS5B01G502600 chr2A 91.287 505 39 3 3611 4113 88671112 88671613 0.000000e+00 684.0
20 TraesCS5B01G502600 chr2A 90.304 526 39 7 2364 2877 88669449 88669974 0.000000e+00 678.0
21 TraesCS5B01G502600 chr2A 87.956 274 28 4 2094 2364 88669111 88669382 7.620000e-83 318.0
22 TraesCS5B01G502600 chr2A 86.842 266 13 11 4456 4709 88671704 88671959 1.290000e-70 278.0
23 TraesCS5B01G502600 chr2A 91.667 84 7 0 2697 2780 88669692 88669775 2.980000e-22 117.0
24 TraesCS5B01G502600 chr2A 82.143 84 10 4 1608 1689 88669778 88669858 3.050000e-07 67.6
25 TraesCS5B01G502600 chr2A 97.368 38 1 0 4433 4470 88671655 88671692 1.100000e-06 65.8
26 TraesCS5B01G502600 chr2D 88.813 1314 82 34 794 2094 88287893 88289154 0.000000e+00 1552.0
27 TraesCS5B01G502600 chr2D 88.268 912 76 16 2439 3334 88290446 88291342 0.000000e+00 1062.0
28 TraesCS5B01G502600 chr2D 89.109 505 41 6 3611 4113 88293936 88294428 2.410000e-172 616.0
29 TraesCS5B01G502600 chr2D 89.293 495 37 7 3328 3811 88293548 88294037 1.450000e-169 606.0
30 TraesCS5B01G502600 chr2D 93.040 273 14 2 4425 4692 88301293 88301565 1.230000e-105 394.0
31 TraesCS5B01G502600 chr2D 89.231 195 19 2 4241 4434 88298403 88298596 4.720000e-60 243.0
32 TraesCS5B01G502600 chr2D 91.860 86 7 0 2695 2780 88290612 88290697 2.310000e-23 121.0
33 TraesCS5B01G502600 chr5A 90.143 1116 63 19 695 1778 658670130 658671230 0.000000e+00 1408.0
34 TraesCS5B01G502600 chr5A 88.022 1102 71 30 2364 3435 658671962 658673032 0.000000e+00 1247.0
35 TraesCS5B01G502600 chr5A 86.389 529 44 13 3482 3995 658673028 658673543 1.920000e-153 553.0
36 TraesCS5B01G502600 chr5A 83.491 424 58 10 1950 2364 658671474 658671894 7.400000e-103 385.0
37 TraesCS5B01G502600 chr5A 92.929 99 7 0 3611 3709 658673267 658673365 1.370000e-30 145.0
38 TraesCS5B01G502600 chr5A 88.983 118 9 3 4601 4714 658673845 658673962 4.920000e-30 143.0
39 TraesCS5B01G502600 chr5A 90.099 101 10 0 3711 3811 658673169 658673269 1.070000e-26 132.0
40 TraesCS5B01G502600 chr5A 94.048 84 5 0 2697 2780 658672205 658672288 1.380000e-25 128.0
41 TraesCS5B01G502600 chr5A 91.566 83 7 0 2605 2687 658672293 658672375 1.070000e-21 115.0
42 TraesCS5B01G502600 chr7B 95.854 603 24 1 1 603 86206043 86205442 0.000000e+00 974.0
43 TraesCS5B01G502600 chr1B 93.656 599 37 1 3 601 623382053 623381456 0.000000e+00 894.0
44 TraesCS5B01G502600 chr1B 92.857 602 42 1 3 604 667384761 667385361 0.000000e+00 872.0
45 TraesCS5B01G502600 chr3A 89.221 603 59 5 1 602 30550547 30551144 0.000000e+00 749.0
46 TraesCS5B01G502600 chr3A 88.147 599 70 1 2 600 744453378 744452781 0.000000e+00 712.0
47 TraesCS5B01G502600 chr3A 82.516 469 41 21 2807 3252 637283460 637283910 1.600000e-99 374.0
48 TraesCS5B01G502600 chr3A 83.831 402 43 7 2421 2801 637282952 637283352 3.470000e-96 363.0
49 TraesCS5B01G502600 chr7D 85.284 598 78 7 3 599 545023403 545023991 4.040000e-170 608.0
50 TraesCS5B01G502600 chr7D 83.333 96 4 7 2930 3024 178153881 178153965 1.410000e-10 78.7
51 TraesCS5B01G502600 chr4A 83.139 599 95 5 2 599 544897839 544898432 4.150000e-150 542.0
52 TraesCS5B01G502600 chr3D 81.391 532 51 16 2421 2906 497491474 497490945 1.590000e-104 390.0
53 TraesCS5B01G502600 chr3D 82.955 352 33 11 2919 3263 497381971 497381640 4.620000e-75 292.0
54 TraesCS5B01G502600 chr3B 81.448 221 18 11 2946 3160 657539470 657539267 4.890000e-35 159.0
55 TraesCS5B01G502600 chr3B 91.892 74 6 0 2421 2494 657541282 657541209 2.320000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G502600 chr5B 669669244 669673960 4716 False 4411.000000 8711 95.679000 1 4717 2 chr5B.!!$F1 4716
1 TraesCS5B01G502600 chr5D 530424481 530428593 4112 False 710.500000 1871 90.734000 761 4711 6 chr5D.!!$F1 3950
2 TraesCS5B01G502600 chr2B 141559099 141565111 6012 False 735.016667 1712 88.644667 794 4434 6 chr2B.!!$F1 3640
3 TraesCS5B01G502600 chr2A 88661936 88663218 1282 False 1611.000000 1611 89.362000 794 2094 1 chr2A.!!$F2 1300
4 TraesCS5B01G502600 chr2A 38589376 38589975 599 False 787.000000 787 90.365000 2 602 1 chr2A.!!$F1 600
5 TraesCS5B01G502600 chr2A 38348719 38349222 503 True 693.000000 693 91.535000 97 601 1 chr2A.!!$R1 504
6 TraesCS5B01G502600 chr2A 88669111 88671959 2848 False 406.550000 1044 89.356875 1608 4709 8 chr2A.!!$F3 3101
7 TraesCS5B01G502600 chr2D 88287893 88301565 13672 False 656.285714 1552 89.944857 794 4692 7 chr2D.!!$F1 3898
8 TraesCS5B01G502600 chr5A 658670130 658673962 3832 False 472.888889 1408 89.518889 695 4714 9 chr5A.!!$F1 4019
9 TraesCS5B01G502600 chr7B 86205442 86206043 601 True 974.000000 974 95.854000 1 603 1 chr7B.!!$R1 602
10 TraesCS5B01G502600 chr1B 623381456 623382053 597 True 894.000000 894 93.656000 3 601 1 chr1B.!!$R1 598
11 TraesCS5B01G502600 chr1B 667384761 667385361 600 False 872.000000 872 92.857000 3 604 1 chr1B.!!$F1 601
12 TraesCS5B01G502600 chr3A 30550547 30551144 597 False 749.000000 749 89.221000 1 602 1 chr3A.!!$F1 601
13 TraesCS5B01G502600 chr3A 744452781 744453378 597 True 712.000000 712 88.147000 2 600 1 chr3A.!!$R1 598
14 TraesCS5B01G502600 chr3A 637282952 637283910 958 False 368.500000 374 83.173500 2421 3252 2 chr3A.!!$F2 831
15 TraesCS5B01G502600 chr7D 545023403 545023991 588 False 608.000000 608 85.284000 3 599 1 chr7D.!!$F2 596
16 TraesCS5B01G502600 chr4A 544897839 544898432 593 False 542.000000 542 83.139000 2 599 1 chr4A.!!$F1 597
17 TraesCS5B01G502600 chr3D 497490945 497491474 529 True 390.000000 390 81.391000 2421 2906 1 chr3D.!!$R2 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 909 0.106719 TCCAAATCTCCCAATCCGCC 60.107 55.000 0.0 0.0 0.00 6.13 F
946 972 0.544595 ACCGCTTGTTCCCTCTAGGT 60.545 55.000 0.0 0.0 36.75 3.08 F
1248 1293 0.673644 ACGGATTTCGCAGGGAAGTG 60.674 55.000 0.0 0.0 43.89 3.16 F
2483 5320 1.003580 ACTGAACCGTCATGATTGCCT 59.996 47.619 0.0 0.0 31.85 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1854 0.233332 GCAATATCCTTCGCGCTCAC 59.767 55.0 5.56 0.0 0.00 3.51 R
2571 5421 1.697082 TTTGTGGACCACGGTGCCTA 61.697 55.0 19.67 0.0 37.14 3.93 R
3187 6497 2.424956 GCCCAAAGCAACAATCTCTAGG 59.575 50.0 0.00 0.0 42.97 3.02 R
3866 9507 0.320697 CCGTTCTTCCCCTCTTCGTT 59.679 55.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.437795 GAGCCATGTTGCTGCGCT 61.438 61.111 9.73 0.00 42.95 5.92
123 124 2.093075 TGGGTCAAGTTAAACACGGACA 60.093 45.455 0.00 0.00 36.70 4.02
264 265 3.443045 GTGCGTGCATGGAAGGGG 61.443 66.667 8.27 0.00 0.00 4.79
351 352 1.490490 AGATTATTCAGGCGCAAGGGA 59.510 47.619 10.83 0.00 38.28 4.20
403 404 7.813148 CGTAAGAGAGATTCAGTACCTTTTGAA 59.187 37.037 0.00 0.00 43.02 2.69
454 455 7.094075 TGCTAGTCGTTCTCAGAATAAGGTTAA 60.094 37.037 0.00 0.00 0.00 2.01
515 516 2.065899 TGACTTGGTTTGGTTCTGGG 57.934 50.000 0.00 0.00 0.00 4.45
559 560 3.316308 AGCCCTCGATGATTGTAATTTGC 59.684 43.478 0.00 0.00 0.00 3.68
589 590 8.880991 TTCTGAGTAATACAAGTCTTCTACCT 57.119 34.615 0.00 0.00 0.00 3.08
619 620 4.789012 AAAAAGTATGTGGCAGTCCATG 57.211 40.909 0.00 0.00 45.62 3.66
620 621 3.439857 AAAGTATGTGGCAGTCCATGT 57.560 42.857 0.00 0.00 45.62 3.21
621 622 2.408271 AGTATGTGGCAGTCCATGTG 57.592 50.000 0.00 0.00 45.62 3.21
622 623 1.908619 AGTATGTGGCAGTCCATGTGA 59.091 47.619 0.00 0.00 45.62 3.58
623 624 2.305635 AGTATGTGGCAGTCCATGTGAA 59.694 45.455 0.00 0.00 45.62 3.18
624 625 2.291209 ATGTGGCAGTCCATGTGAAA 57.709 45.000 0.00 0.00 45.62 2.69
625 626 2.291209 TGTGGCAGTCCATGTGAAAT 57.709 45.000 0.00 0.00 45.62 2.17
626 627 2.161855 TGTGGCAGTCCATGTGAAATC 58.838 47.619 0.00 0.00 45.62 2.17
627 628 2.224843 TGTGGCAGTCCATGTGAAATCT 60.225 45.455 0.00 0.00 45.62 2.40
628 629 2.821969 GTGGCAGTCCATGTGAAATCTT 59.178 45.455 0.00 0.00 45.62 2.40
629 630 3.256631 GTGGCAGTCCATGTGAAATCTTT 59.743 43.478 0.00 0.00 45.62 2.52
630 631 4.458989 GTGGCAGTCCATGTGAAATCTTTA 59.541 41.667 0.00 0.00 45.62 1.85
631 632 5.048083 GTGGCAGTCCATGTGAAATCTTTAA 60.048 40.000 0.00 0.00 45.62 1.52
632 633 5.538053 TGGCAGTCCATGTGAAATCTTTAAA 59.462 36.000 0.00 0.00 37.47 1.52
633 634 6.041409 TGGCAGTCCATGTGAAATCTTTAAAA 59.959 34.615 0.00 0.00 37.47 1.52
634 635 6.928492 GGCAGTCCATGTGAAATCTTTAAAAA 59.072 34.615 0.00 0.00 0.00 1.94
668 669 9.886132 ATTTAGAAACGGAGAAAGTACATATGT 57.114 29.630 13.93 13.93 0.00 2.29
669 670 8.697846 TTAGAAACGGAGAAAGTACATATGTG 57.302 34.615 18.81 0.64 0.00 3.21
670 671 6.106673 AGAAACGGAGAAAGTACATATGTGG 58.893 40.000 18.81 0.00 0.00 4.17
671 672 5.416271 AACGGAGAAAGTACATATGTGGT 57.584 39.130 18.81 2.24 0.00 4.16
672 673 4.755411 ACGGAGAAAGTACATATGTGGTG 58.245 43.478 18.81 1.05 0.00 4.17
673 674 4.464951 ACGGAGAAAGTACATATGTGGTGA 59.535 41.667 18.81 0.00 0.00 4.02
674 675 5.128827 ACGGAGAAAGTACATATGTGGTGAT 59.871 40.000 18.81 0.90 0.00 3.06
675 676 5.692204 CGGAGAAAGTACATATGTGGTGATC 59.308 44.000 18.81 9.84 0.00 2.92
676 677 6.461648 CGGAGAAAGTACATATGTGGTGATCT 60.462 42.308 18.81 13.96 0.00 2.75
677 678 6.926272 GGAGAAAGTACATATGTGGTGATCTC 59.074 42.308 18.81 19.98 0.00 2.75
678 679 7.201956 GGAGAAAGTACATATGTGGTGATCTCT 60.202 40.741 18.81 10.16 0.00 3.10
679 680 8.083828 AGAAAGTACATATGTGGTGATCTCTT 57.916 34.615 18.81 6.97 0.00 2.85
680 681 7.984050 AGAAAGTACATATGTGGTGATCTCTTG 59.016 37.037 18.81 0.00 0.00 3.02
681 682 6.798427 AGTACATATGTGGTGATCTCTTGT 57.202 37.500 18.81 0.00 0.00 3.16
682 683 7.898014 AGTACATATGTGGTGATCTCTTGTA 57.102 36.000 18.81 0.00 0.00 2.41
683 684 7.717568 AGTACATATGTGGTGATCTCTTGTAC 58.282 38.462 18.81 3.27 37.97 2.90
684 685 6.798427 ACATATGTGGTGATCTCTTGTACT 57.202 37.500 7.78 0.00 0.00 2.73
685 686 7.898014 ACATATGTGGTGATCTCTTGTACTA 57.102 36.000 7.78 0.00 0.00 1.82
686 687 7.946207 ACATATGTGGTGATCTCTTGTACTAG 58.054 38.462 7.78 0.00 0.00 2.57
687 688 7.561722 ACATATGTGGTGATCTCTTGTACTAGT 59.438 37.037 7.78 0.00 0.00 2.57
688 689 5.899120 TGTGGTGATCTCTTGTACTAGTC 57.101 43.478 0.00 0.00 0.00 2.59
689 690 5.571285 TGTGGTGATCTCTTGTACTAGTCT 58.429 41.667 0.00 0.00 0.00 3.24
690 691 6.010850 TGTGGTGATCTCTTGTACTAGTCTT 58.989 40.000 0.00 0.00 0.00 3.01
691 692 6.493802 TGTGGTGATCTCTTGTACTAGTCTTT 59.506 38.462 0.00 0.00 0.00 2.52
692 693 7.015292 TGTGGTGATCTCTTGTACTAGTCTTTT 59.985 37.037 0.00 0.00 0.00 2.27
693 694 7.542824 GTGGTGATCTCTTGTACTAGTCTTTTC 59.457 40.741 0.00 0.00 0.00 2.29
716 717 1.272258 CCCCTTGGGTTATGGAACGTT 60.272 52.381 0.00 0.00 38.25 3.99
718 719 1.735571 CCTTGGGTTATGGAACGTTCG 59.264 52.381 21.34 4.08 36.32 3.95
722 723 3.677190 TGGGTTATGGAACGTTCGAAAT 58.323 40.909 21.34 16.29 36.32 2.17
726 727 5.446875 GGGTTATGGAACGTTCGAAATTCTC 60.447 44.000 21.34 6.13 36.32 2.87
727 728 5.723135 GGTTATGGAACGTTCGAAATTCTCG 60.723 44.000 21.34 11.96 41.71 4.04
737 739 2.433436 CGAAATTCTCGTTCCCCCTTT 58.567 47.619 0.00 0.00 42.89 3.11
744 746 1.350019 CTCGTTCCCCCTTTGGTTAGT 59.650 52.381 0.00 0.00 0.00 2.24
822 825 2.363361 CACCCTAGGACCGACCCT 59.637 66.667 11.48 1.34 40.05 4.34
851 855 2.570302 TGGACTAGCCAAGAACCCTAAC 59.430 50.000 3.71 0.00 45.87 2.34
852 856 2.093075 GGACTAGCCAAGAACCCTAACC 60.093 54.545 0.00 0.00 36.34 2.85
853 857 1.914108 ACTAGCCAAGAACCCTAACCC 59.086 52.381 0.00 0.00 0.00 4.11
854 858 1.212195 CTAGCCAAGAACCCTAACCCC 59.788 57.143 0.00 0.00 0.00 4.95
900 909 0.106719 TCCAAATCTCCCAATCCGCC 60.107 55.000 0.00 0.00 0.00 6.13
918 927 1.095807 CCGCCCCTTCGAGAAATTCC 61.096 60.000 0.00 0.00 0.00 3.01
946 972 0.544595 ACCGCTTGTTCCCTCTAGGT 60.545 55.000 0.00 0.00 36.75 3.08
1170 1214 4.856607 CTCCTCGCCGTCTTCGCC 62.857 72.222 0.00 0.00 35.54 5.54
1213 1258 1.595357 CCGACCTACCTTTTCCGCT 59.405 57.895 0.00 0.00 0.00 5.52
1222 1267 2.357760 TTTTCCGCTCGTTCCCCG 60.358 61.111 0.00 0.00 38.13 5.73
1248 1293 0.673644 ACGGATTTCGCAGGGAAGTG 60.674 55.000 0.00 0.00 43.89 3.16
1471 1517 7.201384 GCTTTGCTGAAGTGCTAATATTTGTTC 60.201 37.037 0.00 0.00 37.69 3.18
1487 1533 2.019951 TTCCGCTTCGTCTTCGTGC 61.020 57.895 0.00 0.00 38.33 5.34
1511 1557 3.713288 CCGCGTAGATAACTTGAATGGA 58.287 45.455 4.92 0.00 0.00 3.41
1532 1578 3.193782 AGCTAAGGTTCTTGGGAGGATT 58.806 45.455 0.00 0.00 0.00 3.01
1571 1617 5.365605 TGTGGAGAAGTACAAGAAGAAGGAA 59.634 40.000 0.00 0.00 0.00 3.36
1575 1621 6.209788 GGAGAAGTACAAGAAGAAGGAAGAGA 59.790 42.308 0.00 0.00 0.00 3.10
1584 1630 3.443145 AGAAGGAAGAGAAGGACGAGA 57.557 47.619 0.00 0.00 0.00 4.04
1694 1740 6.364568 TCCCATGATGAACAGGTATCTATG 57.635 41.667 0.00 0.00 0.00 2.23
1696 1742 4.940046 CCATGATGAACAGGTATCTATGCC 59.060 45.833 0.00 0.00 0.00 4.40
1699 1745 1.070134 TGAACAGGTATCTATGCCGCC 59.930 52.381 0.00 0.00 37.65 6.13
1712 1758 1.153765 GCCGCCTCTGCAATTTTCC 60.154 57.895 0.00 0.00 37.32 3.13
1717 1763 3.328505 CGCCTCTGCAATTTTCCAATTT 58.671 40.909 0.00 0.00 37.32 1.82
1754 1804 7.426606 TGCTAGGAATACACACAACCTATTA 57.573 36.000 0.00 0.00 33.60 0.98
1777 1827 4.517285 ACCATCGTGCTCATAGTGATTTT 58.483 39.130 0.00 0.00 0.00 1.82
1778 1828 4.572389 ACCATCGTGCTCATAGTGATTTTC 59.428 41.667 0.00 0.00 0.00 2.29
1803 1853 6.924060 CACCGGAGATGTTTTCTAACTATAGG 59.076 42.308 9.46 0.00 33.74 2.57
1804 1854 6.041751 ACCGGAGATGTTTTCTAACTATAGGG 59.958 42.308 9.46 0.00 33.74 3.53
1813 1863 1.878088 CTAACTATAGGGTGAGCGCGA 59.122 52.381 12.10 0.00 0.00 5.87
1868 1918 9.905713 ATTAGTTTCTAGCCAGTTGATTATTCA 57.094 29.630 0.00 0.00 0.00 2.57
1877 1927 8.773033 AGCCAGTTGATTATTCATTAGGAATT 57.227 30.769 0.00 0.00 43.76 2.17
1879 1929 8.854117 GCCAGTTGATTATTCATTAGGAATTCT 58.146 33.333 5.23 0.00 43.76 2.40
1902 1952 4.034285 ACAAGCAATTAACTACCTGGCT 57.966 40.909 0.00 0.00 0.00 4.75
1935 1985 2.268076 ACTGCATTGGTCCAACCGC 61.268 57.895 17.35 17.35 42.58 5.68
1942 1992 2.203437 GGTCCAACCGCCCAAGTT 60.203 61.111 0.00 0.00 0.00 2.66
1943 1993 1.073548 GGTCCAACCGCCCAAGTTA 59.926 57.895 0.00 0.00 0.00 2.24
1946 1996 2.618559 GGTCCAACCGCCCAAGTTATTA 60.619 50.000 0.00 0.00 0.00 0.98
1958 2251 8.356657 CCGCCCAAGTTATTATTTGATTATTCA 58.643 33.333 0.00 0.00 0.00 2.57
2014 2307 5.233050 CCTCATAGTAATTTGCACGAGTGAG 59.767 44.000 7.50 0.00 0.00 3.51
2021 2314 3.414549 TTTGCACGAGTGAGGTTTTTC 57.585 42.857 7.50 0.00 0.00 2.29
2030 2323 4.065789 GAGTGAGGTTTTTCCACTACAGG 58.934 47.826 0.00 0.00 40.80 4.00
2096 4859 6.012113 AGTTCCTGACATTTCATTCCAATGA 58.988 36.000 0.00 0.00 43.28 2.57
2133 4898 6.380846 ACGGTCTGTGGTATAATTTACACCTA 59.619 38.462 5.52 0.00 33.28 3.08
2135 4900 6.698766 GGTCTGTGGTATAATTTACACCTACG 59.301 42.308 5.52 0.00 33.28 3.51
2139 4904 8.845413 TGTGGTATAATTTACACCTACGTTTT 57.155 30.769 5.52 0.00 33.28 2.43
2166 4931 6.939132 AGATGAAGATATGCTGGAAACTTG 57.061 37.500 0.00 0.00 0.00 3.16
2186 4951 2.901192 TGTACTTGCACAGTAAGGCCTA 59.099 45.455 5.16 0.00 39.86 3.93
2187 4952 2.474410 ACTTGCACAGTAAGGCCTAC 57.526 50.000 5.16 4.84 31.97 3.18
2188 4953 1.978580 ACTTGCACAGTAAGGCCTACT 59.021 47.619 5.16 7.42 41.87 2.57
2223 4990 7.756722 GGTCATCATTTTACTTCAGTCAAATGG 59.243 37.037 19.50 9.84 43.98 3.16
2240 5008 6.098266 GTCAAATGGCCTATTACCTTCCAAAT 59.902 38.462 3.32 0.00 0.00 2.32
2241 5009 6.671779 TCAAATGGCCTATTACCTTCCAAATT 59.328 34.615 3.32 0.00 0.00 1.82
2299 5067 7.753132 GGAATGAACAGTAATCGTTGCAAATAA 59.247 33.333 0.00 0.00 35.13 1.40
2301 5069 8.673626 ATGAACAGTAATCGTTGCAAATAAAG 57.326 30.769 0.00 0.00 0.00 1.85
2315 5083 5.105023 TGCAAATAAAGGCTCCATTTATGCA 60.105 36.000 12.66 12.66 36.50 3.96
2316 5084 5.993441 GCAAATAAAGGCTCCATTTATGCAT 59.007 36.000 3.79 3.79 34.03 3.96
2319 5087 9.545105 CAAATAAAGGCTCCATTTATGCATTTA 57.455 29.630 3.54 6.52 43.54 1.40
2352 5120 8.491134 TGTTCTAGGTTTGGTTACATGCTATAT 58.509 33.333 0.00 0.00 0.00 0.86
2418 5254 1.608801 GGCTGGAAACATTTGCCCTTG 60.609 52.381 0.00 0.00 41.93 3.61
2483 5320 1.003580 ACTGAACCGTCATGATTGCCT 59.996 47.619 0.00 0.00 31.85 4.75
2496 5333 7.217200 GTCATGATTGCCTACTAATTCTGGTA 58.783 38.462 0.00 0.00 0.00 3.25
2500 5337 6.929049 TGATTGCCTACTAATTCTGGTATTCG 59.071 38.462 0.00 0.00 0.00 3.34
2645 5503 1.159285 CAGAAAGGCGAATGCAGTCA 58.841 50.000 15.31 0.00 45.35 3.41
2667 5525 3.267812 AGGGAGATTCCTGCAGATTTTCA 59.732 43.478 17.39 0.00 36.57 2.69
2706 5564 4.007644 CAGGGCTGTGGCGTCTGA 62.008 66.667 0.00 0.00 40.32 3.27
2727 5585 1.909700 ATGCTTTCCAGAAAGGCGAA 58.090 45.000 19.05 1.38 45.85 4.70
2757 5615 1.399791 GGAGCTTCCTGCAGATTTTCG 59.600 52.381 17.39 0.00 45.94 3.46
2801 5742 2.954989 TGCTTGTGCATTCACCAAGTAA 59.045 40.909 13.60 2.86 45.31 2.24
2917 6197 6.095300 TGAGTTGTTTATCATTTCGCCATGAT 59.905 34.615 12.23 12.23 44.55 2.45
2929 6209 4.422073 TCGCCATGATGTTCCTTTAGAT 57.578 40.909 0.00 0.00 0.00 1.98
2981 6261 7.083858 GTGATATGCTGAAAACTTGTGCTTAA 58.916 34.615 0.00 0.00 0.00 1.85
2982 6262 7.061094 GTGATATGCTGAAAACTTGTGCTTAAC 59.939 37.037 0.00 0.00 0.00 2.01
2983 6263 4.981806 TGCTGAAAACTTGTGCTTAACT 57.018 36.364 0.00 0.00 0.00 2.24
2984 6264 4.671377 TGCTGAAAACTTGTGCTTAACTG 58.329 39.130 0.00 0.00 0.00 3.16
2985 6265 3.487207 GCTGAAAACTTGTGCTTAACTGC 59.513 43.478 0.00 0.00 0.00 4.40
2986 6266 4.734695 GCTGAAAACTTGTGCTTAACTGCT 60.735 41.667 0.00 0.00 0.00 4.24
2987 6267 5.323371 TGAAAACTTGTGCTTAACTGCTT 57.677 34.783 0.00 0.00 0.00 3.91
2988 6268 6.443934 TGAAAACTTGTGCTTAACTGCTTA 57.556 33.333 0.00 0.00 0.00 3.09
3006 6286 6.001449 TGCTTATCACAGTAAGGCCTTTAT 57.999 37.500 26.08 10.05 33.31 1.40
3016 6296 5.471456 CAGTAAGGCCTTTATATTGCTCTGG 59.529 44.000 26.08 0.00 0.00 3.86
3017 6297 4.526438 AAGGCCTTTATATTGCTCTGGT 57.474 40.909 13.78 0.00 0.00 4.00
3018 6298 4.092116 AGGCCTTTATATTGCTCTGGTC 57.908 45.455 0.00 0.00 0.00 4.02
3019 6299 3.459598 AGGCCTTTATATTGCTCTGGTCA 59.540 43.478 0.00 0.00 0.00 4.02
3025 6316 7.445121 CCTTTATATTGCTCTGGTCATGTCTA 58.555 38.462 0.00 0.00 0.00 2.59
3050 6341 6.365970 ACTTCACTTGGATGAGTCATTACT 57.634 37.500 7.16 0.00 39.21 2.24
3078 6369 9.944663 GCAAAATATATTTCATGAACTCCGTAA 57.055 29.630 7.89 0.00 0.00 3.18
3106 6407 8.424918 AGATATGTTGATTCGGAGTAACATTCT 58.575 33.333 12.08 11.38 42.09 2.40
3114 6415 5.147330 TCGGAGTAACATTCTCACATTGT 57.853 39.130 0.00 0.00 34.04 2.71
3119 6420 6.820656 GGAGTAACATTCTCACATTGTCAGAT 59.179 38.462 0.00 0.00 34.04 2.90
3180 6490 6.799926 TTTATTGCATTGCGCTAGATATGA 57.200 33.333 9.73 0.00 43.06 2.15
3187 6497 5.005203 GCATTGCGCTAGATATGACTGTATC 59.995 44.000 9.73 0.00 37.77 2.24
3256 6566 5.733676 TGCTACATGCTTCTCTGAATGTAA 58.266 37.500 0.00 0.00 37.83 2.41
3257 6567 5.582269 TGCTACATGCTTCTCTGAATGTAAC 59.418 40.000 0.00 0.00 37.83 2.50
3312 6628 0.034186 TCTATTGTTGCCTGGCTGGG 60.034 55.000 21.03 2.60 36.00 4.45
3336 8863 7.228706 GGGAATATGTGTCCTTTATACTTGGTG 59.771 40.741 0.00 0.00 35.33 4.17
3360 8887 6.809689 TGGTATAGTTCATCAGTAACGTTGTG 59.190 38.462 11.99 8.59 32.00 3.33
3366 8893 2.588027 TCAGTAACGTTGTGCAGTCA 57.412 45.000 11.99 0.00 0.00 3.41
3516 9047 4.025813 CACCAAAGAGCCACAAAAATTTCG 60.026 41.667 0.00 0.00 0.00 3.46
3550 9081 1.753368 GAAGAGGCGAGATCAGGGGG 61.753 65.000 0.00 0.00 0.00 5.40
3552 9083 2.041265 AGGCGAGATCAGGGGGTT 59.959 61.111 0.00 0.00 0.00 4.11
3588 9130 1.481871 TGTACAGGGACCGAGATTCC 58.518 55.000 0.00 0.00 0.00 3.01
3608 9150 2.902523 CAGGTCAGAGACATGGTGATG 58.097 52.381 4.06 0.00 40.11 3.07
3633 9175 5.057149 AGACACAAAACATAGTGACAGGAC 58.943 41.667 0.00 0.00 39.03 3.85
3673 9215 2.020720 GAGAGATCAAGAGGCGACAGA 58.979 52.381 0.00 0.00 0.00 3.41
3709 9251 3.196685 ACAGGGGAAGAGAAGAAAGATCG 59.803 47.826 0.00 0.00 0.00 3.69
3714 9256 4.141824 GGGAAGAGAAGAAAGATCGGACAT 60.142 45.833 0.00 0.00 0.00 3.06
3724 9266 9.751542 GAAGAAAGATCGGACATAAAAGATAGA 57.248 33.333 0.00 0.00 0.00 1.98
3727 9269 9.921637 GAAAGATCGGACATAAAAGATAGAGAT 57.078 33.333 0.00 0.00 0.00 2.75
3737 9279 7.509659 ACATAAAAGATAGAGATAGGAACGGGT 59.490 37.037 0.00 0.00 0.00 5.28
3748 9290 1.133790 AGGAACGGGTACGAGAAATCG 59.866 52.381 0.00 0.00 44.60 3.34
3751 9293 1.590792 CGGGTACGAGAAATCGCCC 60.591 63.158 0.00 0.80 44.60 6.13
3758 9300 0.592754 CGAGAAATCGCCCGAGAGAC 60.593 60.000 0.00 0.00 0.00 3.36
3771 9313 0.603569 GAGAGACCAAGAGGCGACAA 59.396 55.000 0.00 0.00 39.06 3.18
3866 9507 0.809385 CCGTTACGAGAGAAGAGGCA 59.191 55.000 6.24 0.00 0.00 4.75
3871 9512 0.959553 ACGAGAGAAGAGGCAACGAA 59.040 50.000 0.00 0.00 46.39 3.85
3872 9513 1.068194 ACGAGAGAAGAGGCAACGAAG 60.068 52.381 0.00 0.00 46.39 3.79
3875 9516 1.548269 AGAGAAGAGGCAACGAAGAGG 59.452 52.381 0.00 0.00 46.39 3.69
3908 9551 7.042335 CGGTACAGGAAATCAGAGATAAAACT 58.958 38.462 0.00 0.00 0.00 2.66
3909 9552 7.549488 CGGTACAGGAAATCAGAGATAAAACTT 59.451 37.037 0.00 0.00 0.00 2.66
3910 9553 8.669243 GGTACAGGAAATCAGAGATAAAACTTG 58.331 37.037 0.00 0.00 0.00 3.16
3911 9554 7.693969 ACAGGAAATCAGAGATAAAACTTGG 57.306 36.000 0.00 0.00 0.00 3.61
3912 9555 6.660949 ACAGGAAATCAGAGATAAAACTTGGG 59.339 38.462 0.00 0.00 0.00 4.12
3913 9556 6.660949 CAGGAAATCAGAGATAAAACTTGGGT 59.339 38.462 0.00 0.00 0.00 4.51
3914 9557 7.177392 CAGGAAATCAGAGATAAAACTTGGGTT 59.823 37.037 0.00 0.00 37.24 4.11
3915 9558 7.730332 AGGAAATCAGAGATAAAACTTGGGTTT 59.270 33.333 0.00 0.00 46.27 3.27
3926 9577 1.076632 TTGGGTTTTCAGGGCACGT 60.077 52.632 0.00 0.00 0.00 4.49
3956 9608 5.812642 CGTTGCTATTCTAGTCTGGTTGATT 59.187 40.000 0.00 0.00 0.00 2.57
3957 9609 6.978659 CGTTGCTATTCTAGTCTGGTTGATTA 59.021 38.462 0.00 0.00 0.00 1.75
3973 9625 9.607285 CTGGTTGATTATTTGTACTTGTACAAC 57.393 33.333 21.44 12.66 39.39 3.32
3977 9629 7.798801 TGATTATTTGTACTTGTACAACGTGG 58.201 34.615 21.44 0.00 39.39 4.94
3988 9640 4.663166 TGTACAACGTGGACAATTTTGTG 58.337 39.130 0.00 0.00 38.47 3.33
3996 9648 2.438868 GACAATTTTGTGCAGTCCCC 57.561 50.000 0.00 0.00 42.43 4.81
3999 9651 1.962807 CAATTTTGTGCAGTCCCCTGA 59.037 47.619 0.00 0.00 41.50 3.86
4023 9700 9.545105 TGATGTTTGCTTGTTCTTTTCATTTAT 57.455 25.926 0.00 0.00 0.00 1.40
4041 9718 8.506168 TCATTTATGAGGTTTCTGAACATACC 57.494 34.615 2.21 2.21 37.51 2.73
4044 9721 5.762179 ATGAGGTTTCTGAACATACCAGA 57.238 39.130 11.26 0.00 38.74 3.86
4067 9746 3.068590 CCATGGATGATTTTGCAGGGTAC 59.931 47.826 5.56 0.00 34.62 3.34
4095 9782 4.218200 TCAATCCATTGGTTTACACAGCAG 59.782 41.667 1.86 0.00 38.30 4.24
4096 9783 2.513753 TCCATTGGTTTACACAGCAGG 58.486 47.619 1.86 0.00 0.00 4.85
4101 9788 1.213182 TGGTTTACACAGCAGGGTTCA 59.787 47.619 0.00 0.00 0.00 3.18
4107 9794 6.038271 GGTTTACACAGCAGGGTTCATTATAG 59.962 42.308 0.00 0.00 0.00 1.31
4109 9796 5.179452 ACACAGCAGGGTTCATTATAGTT 57.821 39.130 0.00 0.00 0.00 2.24
4110 9797 6.308015 ACACAGCAGGGTTCATTATAGTTA 57.692 37.500 0.00 0.00 0.00 2.24
4131 9818 8.901472 AGTTATATAATACTCTCTGCATCCCA 57.099 34.615 0.00 0.00 0.00 4.37
4132 9819 9.326489 AGTTATATAATACTCTCTGCATCCCAA 57.674 33.333 0.00 0.00 0.00 4.12
4133 9820 9.944376 GTTATATAATACTCTCTGCATCCCAAA 57.056 33.333 0.00 0.00 0.00 3.28
4138 9825 7.814264 AATACTCTCTGCATCCCAAAATAAG 57.186 36.000 0.00 0.00 0.00 1.73
4139 9826 5.184892 ACTCTCTGCATCCCAAAATAAGT 57.815 39.130 0.00 0.00 0.00 2.24
4140 9827 4.946157 ACTCTCTGCATCCCAAAATAAGTG 59.054 41.667 0.00 0.00 0.00 3.16
4141 9828 4.922206 TCTCTGCATCCCAAAATAAGTGT 58.078 39.130 0.00 0.00 0.00 3.55
4142 9829 4.943705 TCTCTGCATCCCAAAATAAGTGTC 59.056 41.667 0.00 0.00 0.00 3.67
4143 9830 4.661222 TCTGCATCCCAAAATAAGTGTCA 58.339 39.130 0.00 0.00 0.00 3.58
4144 9831 4.458989 TCTGCATCCCAAAATAAGTGTCAC 59.541 41.667 0.00 0.00 0.00 3.67
4145 9832 4.406456 TGCATCCCAAAATAAGTGTCACT 58.594 39.130 0.00 0.00 0.00 3.41
4146 9833 4.218200 TGCATCCCAAAATAAGTGTCACTG 59.782 41.667 6.18 0.00 0.00 3.66
4147 9834 4.458989 GCATCCCAAAATAAGTGTCACTGA 59.541 41.667 6.18 0.00 0.00 3.41
4148 9835 5.048083 GCATCCCAAAATAAGTGTCACTGAA 60.048 40.000 6.18 0.00 0.00 3.02
4149 9836 6.615088 CATCCCAAAATAAGTGTCACTGAAG 58.385 40.000 6.18 0.00 0.00 3.02
4150 9837 5.690865 TCCCAAAATAAGTGTCACTGAAGT 58.309 37.500 6.18 0.00 0.00 3.01
4151 9838 6.126409 TCCCAAAATAAGTGTCACTGAAGTT 58.874 36.000 6.18 0.95 0.00 2.66
4152 9839 6.039270 TCCCAAAATAAGTGTCACTGAAGTTG 59.961 38.462 6.18 7.67 0.00 3.16
4153 9840 6.183360 CCCAAAATAAGTGTCACTGAAGTTGT 60.183 38.462 6.18 0.00 0.00 3.32
4154 9841 7.012894 CCCAAAATAAGTGTCACTGAAGTTGTA 59.987 37.037 6.18 0.00 0.00 2.41
4155 9842 7.855904 CCAAAATAAGTGTCACTGAAGTTGTAC 59.144 37.037 6.18 0.00 0.00 2.90
4156 9843 8.612619 CAAAATAAGTGTCACTGAAGTTGTACT 58.387 33.333 6.18 0.00 0.00 2.73
4157 9844 9.826574 AAAATAAGTGTCACTGAAGTTGTACTA 57.173 29.630 6.18 0.00 0.00 1.82
4158 9845 9.826574 AAATAAGTGTCACTGAAGTTGTACTAA 57.173 29.630 6.18 0.00 0.00 2.24
4159 9846 9.998106 AATAAGTGTCACTGAAGTTGTACTAAT 57.002 29.630 6.18 0.00 0.00 1.73
4160 9847 9.998106 ATAAGTGTCACTGAAGTTGTACTAATT 57.002 29.630 6.18 0.00 0.00 1.40
4161 9848 8.732746 AAGTGTCACTGAAGTTGTACTAATTT 57.267 30.769 6.18 0.00 0.00 1.82
4162 9849 8.732746 AGTGTCACTGAAGTTGTACTAATTTT 57.267 30.769 4.21 0.00 0.00 1.82
4163 9850 9.174166 AGTGTCACTGAAGTTGTACTAATTTTT 57.826 29.630 4.21 0.00 0.00 1.94
4192 9879 3.305398 TTTTGCGGTTCAAACTTGTGT 57.695 38.095 0.00 0.00 43.76 3.72
4193 9880 3.305398 TTTGCGGTTCAAACTTGTGTT 57.695 38.095 0.00 0.00 39.58 3.32
4194 9881 4.436242 TTTGCGGTTCAAACTTGTGTTA 57.564 36.364 0.00 0.00 39.58 2.41
4195 9882 4.436242 TTGCGGTTCAAACTTGTGTTAA 57.564 36.364 0.00 0.00 34.96 2.01
4196 9883 4.640789 TGCGGTTCAAACTTGTGTTAAT 57.359 36.364 0.00 0.00 34.96 1.40
4197 9884 5.752892 TGCGGTTCAAACTTGTGTTAATA 57.247 34.783 0.00 0.00 34.96 0.98
4198 9885 5.512473 TGCGGTTCAAACTTGTGTTAATAC 58.488 37.500 0.00 0.00 34.96 1.89
4199 9886 5.066117 TGCGGTTCAAACTTGTGTTAATACA 59.934 36.000 0.24 0.24 34.96 2.29
4200 9887 5.623673 GCGGTTCAAACTTGTGTTAATACAG 59.376 40.000 5.15 3.34 34.96 2.74
4201 9888 6.721321 CGGTTCAAACTTGTGTTAATACAGT 58.279 36.000 5.15 3.90 34.96 3.55
4202 9889 6.631238 CGGTTCAAACTTGTGTTAATACAGTG 59.369 38.462 5.15 5.70 34.96 3.66
4203 9890 7.466185 CGGTTCAAACTTGTGTTAATACAGTGA 60.466 37.037 5.15 5.80 34.96 3.41
4204 9891 7.642586 GGTTCAAACTTGTGTTAATACAGTGAC 59.357 37.037 5.15 4.74 34.96 3.67
4205 9892 7.851387 TCAAACTTGTGTTAATACAGTGACA 57.149 32.000 5.15 0.00 34.96 3.58
4206 9893 7.690228 TCAAACTTGTGTTAATACAGTGACAC 58.310 34.615 5.15 0.00 41.97 3.67
4207 9894 7.551262 TCAAACTTGTGTTAATACAGTGACACT 59.449 33.333 1.07 1.07 42.09 3.55
4208 9895 7.859325 AACTTGTGTTAATACAGTGACACTT 57.141 32.000 5.04 0.58 42.09 3.16
4209 9896 8.951787 AACTTGTGTTAATACAGTGACACTTA 57.048 30.769 5.04 2.90 42.09 2.24
4210 9897 9.555727 AACTTGTGTTAATACAGTGACACTTAT 57.444 29.630 5.04 5.10 42.09 1.73
4211 9898 9.555727 ACTTGTGTTAATACAGTGACACTTATT 57.444 29.630 5.04 14.45 42.09 1.40
4215 9902 9.607285 GTGTTAATACAGTGACACTTATTTTGG 57.393 33.333 19.21 6.76 39.33 3.28
4216 9903 8.788806 TGTTAATACAGTGACACTTATTTTGGG 58.211 33.333 19.21 6.20 0.00 4.12
4217 9904 9.005777 GTTAATACAGTGACACTTATTTTGGGA 57.994 33.333 19.21 2.50 0.00 4.37
4218 9905 9.747898 TTAATACAGTGACACTTATTTTGGGAT 57.252 29.630 19.21 4.34 0.00 3.85
4220 9907 8.964476 ATACAGTGACACTTATTTTGGGATAG 57.036 34.615 5.04 0.00 0.00 2.08
4221 9908 7.016153 ACAGTGACACTTATTTTGGGATAGA 57.984 36.000 5.04 0.00 0.00 1.98
4222 9909 7.106239 ACAGTGACACTTATTTTGGGATAGAG 58.894 38.462 5.04 0.00 0.00 2.43
4223 9910 6.540189 CAGTGACACTTATTTTGGGATAGAGG 59.460 42.308 5.04 0.00 0.00 3.69
4224 9911 5.823045 GTGACACTTATTTTGGGATAGAGGG 59.177 44.000 0.00 0.00 0.00 4.30
4225 9912 5.729229 TGACACTTATTTTGGGATAGAGGGA 59.271 40.000 0.00 0.00 0.00 4.20
4226 9913 6.216662 TGACACTTATTTTGGGATAGAGGGAA 59.783 38.462 0.00 0.00 0.00 3.97
4227 9914 7.091993 TGACACTTATTTTGGGATAGAGGGAAT 60.092 37.037 0.00 0.00 0.00 3.01
4239 9926 5.961421 GGATAGAGGGAATACTTATCTGGCT 59.039 44.000 0.00 0.00 0.00 4.75
4251 13898 6.176014 ACTTATCTGGCTAATCTTGTACCC 57.824 41.667 0.00 0.00 0.00 3.69
4254 13901 2.771943 TCTGGCTAATCTTGTACCCCTG 59.228 50.000 0.00 0.00 0.00 4.45
4260 13907 3.721087 AATCTTGTACCCCTGTGGAAG 57.279 47.619 0.00 0.00 38.00 3.46
4294 13941 3.772572 TGTAGCACTATTAGCACCTCCAA 59.227 43.478 0.00 0.00 0.00 3.53
4296 13943 2.571653 AGCACTATTAGCACCTCCAACA 59.428 45.455 0.00 0.00 0.00 3.33
4311 13960 8.247562 GCACCTCCAACATGTAATTTTAACATA 58.752 33.333 0.00 0.00 35.82 2.29
4423 14208 4.020662 TGGCAGAAAAACAAAGGTGAAAGT 60.021 37.500 0.00 0.00 0.00 2.66
4483 17000 7.490962 TGAACAGAACTACACAACCTAAATG 57.509 36.000 0.00 0.00 0.00 2.32
4484 17001 7.276658 TGAACAGAACTACACAACCTAAATGA 58.723 34.615 0.00 0.00 0.00 2.57
4485 17002 7.225931 TGAACAGAACTACACAACCTAAATGAC 59.774 37.037 0.00 0.00 0.00 3.06
4508 17030 2.754552 TGCATCTTTAAGCATCACCCAC 59.245 45.455 0.00 0.00 35.51 4.61
4543 17069 3.287867 ACGCATCATTCTCCCAGATTT 57.712 42.857 0.00 0.00 0.00 2.17
4548 17074 4.643784 GCATCATTCTCCCAGATTTCAGTT 59.356 41.667 0.00 0.00 0.00 3.16
4562 17088 9.480053 CCAGATTTCAGTTGAAACAAATTACAT 57.520 29.630 9.29 0.00 45.55 2.29
4594 17120 5.511545 GGCTGTAATCTCATACCCACCTTAG 60.512 48.000 0.00 0.00 0.00 2.18
4668 17195 4.890088 AGCTACAACTGTTTATTCGGTGA 58.110 39.130 0.00 0.00 0.00 4.02
4692 17219 3.430098 GCAAAGAACCCACATCAAACACA 60.430 43.478 0.00 0.00 0.00 3.72
4716 17247 3.305398 CGAAGGTTTCTGCTACAGACT 57.695 47.619 0.00 0.00 40.46 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.244770 GGGTTCTCTGGTGTTCACCAATA 60.245 47.826 22.41 13.94 39.61 1.90
123 124 1.818674 GCCATTTTCATCAACCGACCT 59.181 47.619 0.00 0.00 0.00 3.85
454 455 2.483889 GCAAAGGAAGCTAGGCTATCGT 60.484 50.000 0.00 0.00 38.25 3.73
515 516 3.430333 GCTCTACAGCTACTGAAGGTC 57.570 52.381 0.78 0.00 43.09 3.85
559 560 8.474025 AGAAGACTTGTATTACTCAGAATCCAG 58.526 37.037 0.00 0.00 0.00 3.86
609 610 5.643379 TTAAAGATTTCACATGGACTGCC 57.357 39.130 0.00 0.00 0.00 4.85
610 611 7.945033 TTTTTAAAGATTTCACATGGACTGC 57.055 32.000 0.00 0.00 0.00 4.40
642 643 9.886132 ACATATGTACTTTCTCCGTTTCTAAAT 57.114 29.630 6.56 0.00 0.00 1.40
643 644 9.146984 CACATATGTACTTTCTCCGTTTCTAAA 57.853 33.333 8.32 0.00 0.00 1.85
644 645 7.762615 CCACATATGTACTTTCTCCGTTTCTAA 59.237 37.037 8.32 0.00 0.00 2.10
645 646 7.093640 ACCACATATGTACTTTCTCCGTTTCTA 60.094 37.037 8.32 0.00 0.00 2.10
646 647 6.106673 CCACATATGTACTTTCTCCGTTTCT 58.893 40.000 8.32 0.00 0.00 2.52
647 648 5.873164 ACCACATATGTACTTTCTCCGTTTC 59.127 40.000 8.32 0.00 0.00 2.78
648 649 5.642063 CACCACATATGTACTTTCTCCGTTT 59.358 40.000 8.32 0.00 0.00 3.60
649 650 5.046878 TCACCACATATGTACTTTCTCCGTT 60.047 40.000 8.32 0.00 0.00 4.44
650 651 4.464951 TCACCACATATGTACTTTCTCCGT 59.535 41.667 8.32 0.00 0.00 4.69
651 652 5.006153 TCACCACATATGTACTTTCTCCG 57.994 43.478 8.32 0.00 0.00 4.63
652 653 6.821388 AGATCACCACATATGTACTTTCTCC 58.179 40.000 8.32 0.00 0.00 3.71
653 654 7.721402 AGAGATCACCACATATGTACTTTCTC 58.279 38.462 8.32 15.01 0.00 2.87
654 655 7.667575 AGAGATCACCACATATGTACTTTCT 57.332 36.000 8.32 7.50 0.00 2.52
655 656 7.766278 ACAAGAGATCACCACATATGTACTTTC 59.234 37.037 8.32 2.85 0.00 2.62
656 657 7.624549 ACAAGAGATCACCACATATGTACTTT 58.375 34.615 8.32 0.00 0.00 2.66
657 658 7.187824 ACAAGAGATCACCACATATGTACTT 57.812 36.000 8.32 2.38 0.00 2.24
658 659 6.798427 ACAAGAGATCACCACATATGTACT 57.202 37.500 8.32 1.84 0.00 2.73
659 660 7.717568 AGTACAAGAGATCACCACATATGTAC 58.282 38.462 8.32 0.00 40.33 2.90
660 661 7.898014 AGTACAAGAGATCACCACATATGTA 57.102 36.000 8.32 0.00 0.00 2.29
661 662 6.798427 AGTACAAGAGATCACCACATATGT 57.202 37.500 1.41 1.41 0.00 2.29
662 663 7.946207 ACTAGTACAAGAGATCACCACATATG 58.054 38.462 0.00 0.00 0.00 1.78
663 664 8.001875 AGACTAGTACAAGAGATCACCACATAT 58.998 37.037 0.00 0.00 0.00 1.78
664 665 7.347252 AGACTAGTACAAGAGATCACCACATA 58.653 38.462 0.00 0.00 0.00 2.29
665 666 6.191315 AGACTAGTACAAGAGATCACCACAT 58.809 40.000 0.00 0.00 0.00 3.21
666 667 5.571285 AGACTAGTACAAGAGATCACCACA 58.429 41.667 0.00 0.00 0.00 4.17
667 668 6.518208 AAGACTAGTACAAGAGATCACCAC 57.482 41.667 0.00 0.00 0.00 4.16
668 669 7.309867 GGAAAAGACTAGTACAAGAGATCACCA 60.310 40.741 0.00 0.00 0.00 4.17
669 670 7.036829 GGAAAAGACTAGTACAAGAGATCACC 58.963 42.308 0.00 0.00 0.00 4.02
670 671 7.036829 GGGAAAAGACTAGTACAAGAGATCAC 58.963 42.308 0.00 0.00 0.00 3.06
671 672 6.154706 GGGGAAAAGACTAGTACAAGAGATCA 59.845 42.308 0.00 0.00 0.00 2.92
672 673 6.407187 GGGGGAAAAGACTAGTACAAGAGATC 60.407 46.154 0.00 0.00 0.00 2.75
673 674 5.425862 GGGGGAAAAGACTAGTACAAGAGAT 59.574 44.000 0.00 0.00 0.00 2.75
674 675 4.776308 GGGGGAAAAGACTAGTACAAGAGA 59.224 45.833 0.00 0.00 0.00 3.10
675 676 5.087391 GGGGGAAAAGACTAGTACAAGAG 57.913 47.826 0.00 0.00 0.00 2.85
699 700 2.690786 TCGAACGTTCCATAACCCAAG 58.309 47.619 22.07 4.58 31.46 3.61
718 719 2.492088 CCAAAGGGGGAACGAGAATTTC 59.508 50.000 0.00 0.00 0.00 2.17
722 723 0.848053 AACCAAAGGGGGAACGAGAA 59.152 50.000 0.00 0.00 42.91 2.87
726 727 1.202842 ACACTAACCAAAGGGGGAACG 60.203 52.381 0.00 0.00 42.91 3.95
727 728 2.670019 ACACTAACCAAAGGGGGAAC 57.330 50.000 0.00 0.00 42.91 3.62
737 739 3.581332 CCCTTTCCAGTCTACACTAACCA 59.419 47.826 0.00 0.00 0.00 3.67
744 746 0.690762 GCCACCCTTTCCAGTCTACA 59.309 55.000 0.00 0.00 0.00 2.74
900 909 1.429148 CGGAATTTCTCGAAGGGGCG 61.429 60.000 0.00 0.00 0.00 6.13
1170 1214 0.103208 GCGGGTCTGATACTCACTGG 59.897 60.000 0.00 0.00 0.00 4.00
1203 1248 2.038837 GGGGAACGAGCGGAAAAGG 61.039 63.158 0.00 0.00 0.00 3.11
1237 1282 0.951040 GGTCAGAACACTTCCCTGCG 60.951 60.000 0.00 0.00 0.00 5.18
1487 1533 0.248743 TCAAGTTATCTACGCGGCCG 60.249 55.000 24.05 24.05 41.14 6.13
1511 1557 2.344093 TCCTCCCAAGAACCTTAGCT 57.656 50.000 0.00 0.00 0.00 3.32
1532 1578 2.505407 CTCCACATGGTCAACCCTGATA 59.495 50.000 10.90 0.00 35.54 2.15
1571 1617 1.005450 AGCTCCTTCTCGTCCTTCTCT 59.995 52.381 0.00 0.00 0.00 3.10
1575 1621 1.188219 TGCAGCTCCTTCTCGTCCTT 61.188 55.000 0.00 0.00 0.00 3.36
1584 1630 1.278699 CCTCTTCTTCTGCAGCTCCTT 59.721 52.381 9.47 0.00 0.00 3.36
1656 1702 3.384146 TCATGGGAATATTTGCACGCATT 59.616 39.130 0.00 0.00 34.61 3.56
1694 1740 1.153765 GGAAAATTGCAGAGGCGGC 60.154 57.895 0.00 0.00 45.35 6.53
1696 1742 2.660189 ATTGGAAAATTGCAGAGGCG 57.340 45.000 0.00 0.00 45.35 5.52
1754 1804 3.827008 ATCACTATGAGCACGATGGTT 57.173 42.857 0.00 0.00 0.00 3.67
1777 1827 4.884668 AGTTAGAAAACATCTCCGGTGA 57.115 40.909 8.96 8.96 39.71 4.02
1778 1828 6.924060 CCTATAGTTAGAAAACATCTCCGGTG 59.076 42.308 0.00 0.00 39.71 4.94
1781 1831 6.924060 CACCCTATAGTTAGAAAACATCTCCG 59.076 42.308 0.00 0.00 39.71 4.63
1782 1832 8.019656 TCACCCTATAGTTAGAAAACATCTCC 57.980 38.462 0.00 0.00 39.71 3.71
1784 1834 7.501844 GCTCACCCTATAGTTAGAAAACATCT 58.498 38.462 0.00 0.00 42.48 2.90
1803 1853 0.861837 CAATATCCTTCGCGCTCACC 59.138 55.000 5.56 0.00 0.00 4.02
1804 1854 0.233332 GCAATATCCTTCGCGCTCAC 59.767 55.000 5.56 0.00 0.00 3.51
1813 1863 8.448008 TCTACCTAATGATTTGGCAATATCCTT 58.552 33.333 0.00 8.90 0.00 3.36
1843 1893 9.905713 ATGAATAATCAACTGGCTAGAAACTAA 57.094 29.630 3.17 0.00 39.49 2.24
1877 1927 5.646360 GCCAGGTAGTTAATTGCTTGTTAGA 59.354 40.000 0.00 0.00 0.00 2.10
1879 1929 5.566469 AGCCAGGTAGTTAATTGCTTGTTA 58.434 37.500 0.00 0.00 0.00 2.41
1902 1952 6.071447 ACCAATGCAGTGAAATATTGCTACAA 60.071 34.615 17.16 0.00 42.07 2.41
1946 1996 9.754382 GTGTGCATTCCTAATGAATAATCAAAT 57.246 29.630 3.86 0.00 41.85 2.32
1958 2251 5.047164 TGAATTGCTTGTGTGCATTCCTAAT 60.047 36.000 0.00 0.00 42.96 1.73
1983 2276 4.640201 TGCAAATTACTATGAGGCAGGTTC 59.360 41.667 0.00 0.00 0.00 3.62
2014 2307 4.010349 CCTCATCCTGTAGTGGAAAAACC 58.990 47.826 0.00 0.00 39.85 3.27
2021 2314 3.107601 TCCTTTCCTCATCCTGTAGTGG 58.892 50.000 0.00 0.00 0.00 4.00
2030 2323 6.179906 TGATCTGGTTATCCTTTCCTCATC 57.820 41.667 0.00 0.00 34.23 2.92
2065 2360 9.143631 GGAATGAAATGTCAGGAACTAATTTTG 57.856 33.333 0.00 0.00 37.14 2.44
2088 2383 5.943416 ACCGTTATTTCACAGATCATTGGAA 59.057 36.000 0.00 0.00 0.00 3.53
2096 4859 4.253685 CCACAGACCGTTATTTCACAGAT 58.746 43.478 0.00 0.00 0.00 2.90
2133 4898 7.246311 CAGCATATCTTCATCTTGAAAAACGT 58.754 34.615 0.00 0.00 35.73 3.99
2135 4900 7.765307 TCCAGCATATCTTCATCTTGAAAAAC 58.235 34.615 0.00 0.00 35.73 2.43
2139 4904 7.114754 AGTTTCCAGCATATCTTCATCTTGAA 58.885 34.615 0.00 0.00 34.79 2.69
2147 4912 7.467623 CAAGTACAAGTTTCCAGCATATCTTC 58.532 38.462 0.00 0.00 0.00 2.87
2166 4931 2.474410 AGGCCTTACTGTGCAAGTAC 57.526 50.000 0.00 0.00 41.21 2.73
2186 4951 7.781056 AGTAAAATGATGACCACAACAAAAGT 58.219 30.769 0.00 0.00 32.91 2.66
2187 4952 8.647143 AAGTAAAATGATGACCACAACAAAAG 57.353 30.769 0.00 0.00 32.91 2.27
2188 4953 8.253810 TGAAGTAAAATGATGACCACAACAAAA 58.746 29.630 0.00 0.00 32.91 2.44
2277 5045 7.081349 CCTTTATTTGCAACGATTACTGTTCA 58.919 34.615 0.00 0.00 0.00 3.18
2286 5054 3.088532 TGGAGCCTTTATTTGCAACGAT 58.911 40.909 0.00 0.00 0.00 3.73
2299 5067 7.070322 AGTCAATAAATGCATAAATGGAGCCTT 59.930 33.333 0.00 0.00 0.00 4.35
2301 5069 6.752168 AGTCAATAAATGCATAAATGGAGCC 58.248 36.000 0.00 0.00 0.00 4.70
2315 5083 8.706322 ACCAAACCTAGAACAAGTCAATAAAT 57.294 30.769 0.00 0.00 0.00 1.40
2316 5084 8.528044 AACCAAACCTAGAACAAGTCAATAAA 57.472 30.769 0.00 0.00 0.00 1.40
2319 5087 7.057894 TGTAACCAAACCTAGAACAAGTCAAT 58.942 34.615 0.00 0.00 0.00 2.57
2352 5120 9.368674 CATTCACAATCCAATAAGCAAACAATA 57.631 29.630 0.00 0.00 0.00 1.90
2356 5124 6.646240 ACACATTCACAATCCAATAAGCAAAC 59.354 34.615 0.00 0.00 0.00 2.93
2418 5254 8.419922 ACTGATAAACTATAAGGCCTAGTACC 57.580 38.462 5.16 0.00 0.00 3.34
2460 5297 2.426522 CAATCATGACGGTTCAGTGGT 58.573 47.619 0.00 0.00 34.35 4.16
2496 5333 8.345565 GCATTTCTCTGAAATATAACCACGAAT 58.654 33.333 5.38 0.00 0.00 3.34
2500 5337 9.076596 GTTTGCATTTCTCTGAAATATAACCAC 57.923 33.333 5.38 0.00 0.00 4.16
2571 5421 1.697082 TTTGTGGACCACGGTGCCTA 61.697 55.000 19.67 0.00 37.14 3.93
2645 5503 3.267812 TGAAAATCTGCAGGAATCTCCCT 59.732 43.478 15.13 0.00 37.19 4.20
2706 5564 3.281727 TCGCCTTTCTGGAAAGCATAT 57.718 42.857 15.30 0.00 44.76 1.78
2727 5585 2.510238 GAAGCTCCGCGACTGCAT 60.510 61.111 8.23 0.83 42.97 3.96
2757 5615 2.611292 GACAGTTACCTGCTCATCATGC 59.389 50.000 0.00 0.00 42.81 4.06
2810 5751 6.367969 CGTGGAAATTAACACAAGCTAGTAGT 59.632 38.462 11.53 0.00 37.45 2.73
2811 5752 6.588756 TCGTGGAAATTAACACAAGCTAGTAG 59.411 38.462 11.53 0.00 37.45 2.57
2812 5753 6.457355 TCGTGGAAATTAACACAAGCTAGTA 58.543 36.000 11.53 0.00 37.45 1.82
2814 5755 5.637810 TCTCGTGGAAATTAACACAAGCTAG 59.362 40.000 11.53 0.00 37.45 3.42
2849 5811 7.568199 ACTGGCAATATAACTTGTTCATACC 57.432 36.000 0.00 0.00 0.00 2.73
2899 6178 5.593909 AGGAACATCATGGCGAAATGATAAA 59.406 36.000 11.54 0.00 43.83 1.40
2982 6262 3.550437 AGGCCTTACTGTGATAAGCAG 57.450 47.619 0.00 0.00 39.67 4.24
2983 6263 4.301072 AAAGGCCTTACTGTGATAAGCA 57.699 40.909 20.84 0.00 31.80 3.91
2984 6264 8.507249 CAATATAAAGGCCTTACTGTGATAAGC 58.493 37.037 20.84 0.00 31.80 3.09
2985 6265 8.507249 GCAATATAAAGGCCTTACTGTGATAAG 58.493 37.037 20.84 3.53 32.78 1.73
2986 6266 8.217799 AGCAATATAAAGGCCTTACTGTGATAA 58.782 33.333 20.84 0.00 0.00 1.75
2987 6267 7.745717 AGCAATATAAAGGCCTTACTGTGATA 58.254 34.615 20.84 5.78 0.00 2.15
2988 6268 6.605119 AGCAATATAAAGGCCTTACTGTGAT 58.395 36.000 20.84 9.62 0.00 3.06
3006 6286 7.287696 TGAAGTATAGACATGACCAGAGCAATA 59.712 37.037 0.00 0.00 0.00 1.90
3016 6296 7.492524 TCATCCAAGTGAAGTATAGACATGAC 58.507 38.462 0.00 0.00 0.00 3.06
3017 6297 7.343057 ACTCATCCAAGTGAAGTATAGACATGA 59.657 37.037 0.00 0.00 0.00 3.07
3018 6298 7.495901 ACTCATCCAAGTGAAGTATAGACATG 58.504 38.462 0.00 0.00 0.00 3.21
3019 6299 7.343057 TGACTCATCCAAGTGAAGTATAGACAT 59.657 37.037 0.00 0.00 0.00 3.06
3025 6316 8.083828 AGTAATGACTCATCCAAGTGAAGTAT 57.916 34.615 0.00 0.00 0.00 2.12
3050 6341 8.465999 ACGGAGTTCATGAAATATATTTTGCAA 58.534 29.630 10.35 0.00 37.78 4.08
3078 6369 6.873997 TGTTACTCCGAATCAACATATCTGT 58.126 36.000 0.00 0.00 37.12 3.41
3180 6490 6.552445 AAGCAACAATCTCTAGGATACAGT 57.448 37.500 0.00 0.00 41.41 3.55
3187 6497 2.424956 GCCCAAAGCAACAATCTCTAGG 59.575 50.000 0.00 0.00 42.97 3.02
3312 6628 7.773690 ACCACCAAGTATAAAGGACACATATTC 59.226 37.037 0.00 0.00 0.00 1.75
3336 8863 6.237755 GCACAACGTTACTGATGAACTATACC 60.238 42.308 0.00 0.00 0.00 2.73
3360 8887 3.255642 TGGCTTTTTACTGGAATGACTGC 59.744 43.478 0.00 0.00 0.00 4.40
3516 9047 3.625313 GCCTCTTCTTTATTCCTGTCAGC 59.375 47.826 0.00 0.00 0.00 4.26
3550 9081 6.223852 TGTACAACTCTGATCTTGAGGAAAC 58.776 40.000 16.61 10.99 35.98 2.78
3552 9083 5.047021 CCTGTACAACTCTGATCTTGAGGAA 60.047 44.000 16.61 1.85 35.98 3.36
3588 9130 2.419713 CCATCACCATGTCTCTGACCTG 60.420 54.545 0.00 0.00 0.00 4.00
3608 9150 4.452455 CCTGTCACTATGTTTTGTGTCTCC 59.548 45.833 0.00 0.00 35.82 3.71
3620 9162 0.904649 TGCCTGGTCCTGTCACTATG 59.095 55.000 0.00 0.00 0.00 2.23
3633 9175 1.452108 GGGGATTTCTCGTGCCTGG 60.452 63.158 0.00 0.00 0.00 4.45
3673 9215 1.326213 CCCTGTCATCGCCTCTCTGT 61.326 60.000 0.00 0.00 0.00 3.41
3709 9251 8.030106 CCGTTCCTATCTCTATCTTTTATGTCC 58.970 40.741 0.00 0.00 0.00 4.02
3714 9256 7.173907 CGTACCCGTTCCTATCTCTATCTTTTA 59.826 40.741 0.00 0.00 0.00 1.52
3724 9266 3.287867 TTCTCGTACCCGTTCCTATCT 57.712 47.619 0.00 0.00 35.01 1.98
3727 9269 2.355756 CGATTTCTCGTACCCGTTCCTA 59.644 50.000 0.00 0.00 40.07 2.94
3737 9279 0.661552 CTCTCGGGCGATTTCTCGTA 59.338 55.000 0.00 0.00 46.71 3.43
3748 9290 2.896443 CCTCTTGGTCTCTCGGGC 59.104 66.667 0.00 0.00 0.00 6.13
3751 9293 1.137825 GTCGCCTCTTGGTCTCTCG 59.862 63.158 0.00 0.00 35.27 4.04
3758 9300 1.004560 TCTGCTTGTCGCCTCTTGG 60.005 57.895 0.00 0.00 38.05 3.61
3771 9313 2.685017 TGTCATCGCCCCTCTGCT 60.685 61.111 0.00 0.00 0.00 4.24
3778 9320 2.190578 CTTCCCCTGTCATCGCCC 59.809 66.667 0.00 0.00 0.00 6.13
3866 9507 0.320697 CCGTTCTTCCCCTCTTCGTT 59.679 55.000 0.00 0.00 0.00 3.85
3871 9512 1.558233 CTGTACCGTTCTTCCCCTCT 58.442 55.000 0.00 0.00 0.00 3.69
3872 9513 0.535797 CCTGTACCGTTCTTCCCCTC 59.464 60.000 0.00 0.00 0.00 4.30
3875 9516 2.845363 TTTCCTGTACCGTTCTTCCC 57.155 50.000 0.00 0.00 0.00 3.97
3908 9551 1.076632 ACGTGCCCTGAAAACCCAA 60.077 52.632 0.00 0.00 0.00 4.12
3909 9552 1.826054 CACGTGCCCTGAAAACCCA 60.826 57.895 0.82 0.00 0.00 4.51
3910 9553 3.039134 CACGTGCCCTGAAAACCC 58.961 61.111 0.82 0.00 0.00 4.11
3911 9554 2.193536 AGCACGTGCCCTGAAAACC 61.194 57.895 35.51 5.62 43.38 3.27
3912 9555 1.008538 CAGCACGTGCCCTGAAAAC 60.009 57.895 35.51 6.41 43.38 2.43
3913 9556 3.431055 CAGCACGTGCCCTGAAAA 58.569 55.556 35.51 0.00 43.38 2.29
3926 9577 1.207089 ACTAGAATAGCAACGGCAGCA 59.793 47.619 0.00 0.00 44.39 4.41
3973 9625 2.384382 GACTGCACAAAATTGTCCACG 58.616 47.619 0.00 0.00 39.91 4.94
3977 9629 1.963515 AGGGGACTGCACAAAATTGTC 59.036 47.619 0.00 0.00 38.37 3.18
3995 9647 5.350633 TGAAAAGAACAAGCAAACATCAGG 58.649 37.500 0.00 0.00 0.00 3.86
3996 9648 7.473027 AATGAAAAGAACAAGCAAACATCAG 57.527 32.000 0.00 0.00 0.00 2.90
3999 9651 9.545105 TCATAAATGAAAAGAACAAGCAAACAT 57.455 25.926 0.00 0.00 33.08 2.71
4023 9700 4.262894 GGTCTGGTATGTTCAGAAACCTCA 60.263 45.833 4.47 0.00 42.13 3.86
4041 9718 3.181479 CCTGCAAAATCATCCATGGTCTG 60.181 47.826 12.58 10.96 0.00 3.51
4044 9721 2.112998 CCCTGCAAAATCATCCATGGT 58.887 47.619 12.58 0.00 0.00 3.55
4067 9746 5.010516 TGTGTAAACCAATGGATTGAGTTGG 59.989 40.000 6.16 0.00 46.08 3.77
4107 9794 9.944376 TTTGGGATGCAGAGAGTATTATATAAC 57.056 33.333 0.00 0.00 0.00 1.89
4118 9805 4.946157 ACACTTATTTTGGGATGCAGAGAG 59.054 41.667 0.00 0.00 0.00 3.20
4119 9806 4.922206 ACACTTATTTTGGGATGCAGAGA 58.078 39.130 0.00 0.00 0.00 3.10
4120 9807 4.701651 TGACACTTATTTTGGGATGCAGAG 59.298 41.667 0.00 0.00 0.00 3.35
4121 9808 4.458989 GTGACACTTATTTTGGGATGCAGA 59.541 41.667 0.00 0.00 0.00 4.26
4122 9809 4.460382 AGTGACACTTATTTTGGGATGCAG 59.540 41.667 1.07 0.00 0.00 4.41
4123 9810 4.218200 CAGTGACACTTATTTTGGGATGCA 59.782 41.667 5.04 0.00 0.00 3.96
4124 9811 4.458989 TCAGTGACACTTATTTTGGGATGC 59.541 41.667 5.04 0.00 0.00 3.91
4125 9812 6.207417 ACTTCAGTGACACTTATTTTGGGATG 59.793 38.462 5.04 2.97 0.00 3.51
4126 9813 6.306987 ACTTCAGTGACACTTATTTTGGGAT 58.693 36.000 5.04 0.00 0.00 3.85
4127 9814 5.690865 ACTTCAGTGACACTTATTTTGGGA 58.309 37.500 5.04 0.00 0.00 4.37
4128 9815 6.183360 ACAACTTCAGTGACACTTATTTTGGG 60.183 38.462 5.04 0.00 0.00 4.12
4129 9816 6.795399 ACAACTTCAGTGACACTTATTTTGG 58.205 36.000 5.04 0.00 0.00 3.28
4130 9817 8.612619 AGTACAACTTCAGTGACACTTATTTTG 58.387 33.333 5.04 9.77 0.00 2.44
4131 9818 8.732746 AGTACAACTTCAGTGACACTTATTTT 57.267 30.769 5.04 0.00 0.00 1.82
4132 9819 9.826574 TTAGTACAACTTCAGTGACACTTATTT 57.173 29.630 5.04 0.00 0.00 1.40
4133 9820 9.998106 ATTAGTACAACTTCAGTGACACTTATT 57.002 29.630 5.04 0.00 0.00 1.40
4134 9821 9.998106 AATTAGTACAACTTCAGTGACACTTAT 57.002 29.630 5.04 0.00 0.00 1.73
4135 9822 9.826574 AAATTAGTACAACTTCAGTGACACTTA 57.173 29.630 5.04 0.00 0.00 2.24
4136 9823 8.732746 AAATTAGTACAACTTCAGTGACACTT 57.267 30.769 5.04 0.00 0.00 3.16
4137 9824 8.732746 AAAATTAGTACAACTTCAGTGACACT 57.267 30.769 1.07 1.07 0.00 3.55
4173 9860 3.305398 AACACAAGTTTGAACCGCAAA 57.695 38.095 0.00 0.00 43.89 3.68
4174 9861 4.436242 TTAACACAAGTTTGAACCGCAA 57.564 36.364 0.00 0.00 39.15 4.85
4175 9862 4.640789 ATTAACACAAGTTTGAACCGCA 57.359 36.364 0.00 0.00 39.15 5.69
4176 9863 5.512473 TGTATTAACACAAGTTTGAACCGC 58.488 37.500 0.00 0.00 39.15 5.68
4177 9864 6.631238 CACTGTATTAACACAAGTTTGAACCG 59.369 38.462 0.00 0.00 39.15 4.44
4178 9865 7.642586 GTCACTGTATTAACACAAGTTTGAACC 59.357 37.037 0.00 0.00 39.15 3.62
4179 9866 8.178964 TGTCACTGTATTAACACAAGTTTGAAC 58.821 33.333 0.00 0.00 39.15 3.18
4180 9867 8.178964 GTGTCACTGTATTAACACAAGTTTGAA 58.821 33.333 0.00 0.00 41.24 2.69
4181 9868 7.551262 AGTGTCACTGTATTAACACAAGTTTGA 59.449 33.333 4.21 0.00 43.43 2.69
4182 9869 7.693952 AGTGTCACTGTATTAACACAAGTTTG 58.306 34.615 4.21 0.00 43.43 2.93
4183 9870 7.859325 AGTGTCACTGTATTAACACAAGTTT 57.141 32.000 4.21 0.00 43.43 2.66
4184 9871 7.859325 AAGTGTCACTGTATTAACACAAGTT 57.141 32.000 6.18 0.00 43.43 2.66
4185 9872 9.555727 AATAAGTGTCACTGTATTAACACAAGT 57.444 29.630 6.18 0.00 43.43 3.16
4189 9876 9.607285 CCAAAATAAGTGTCACTGTATTAACAC 57.393 33.333 6.18 0.00 41.77 3.32
4190 9877 8.788806 CCCAAAATAAGTGTCACTGTATTAACA 58.211 33.333 6.18 0.00 0.00 2.41
4191 9878 9.005777 TCCCAAAATAAGTGTCACTGTATTAAC 57.994 33.333 6.18 0.00 0.00 2.01
4192 9879 9.747898 ATCCCAAAATAAGTGTCACTGTATTAA 57.252 29.630 6.18 0.00 0.00 1.40
4194 9881 9.396022 CTATCCCAAAATAAGTGTCACTGTATT 57.604 33.333 6.18 9.72 0.00 1.89
4195 9882 8.768397 TCTATCCCAAAATAAGTGTCACTGTAT 58.232 33.333 6.18 4.35 0.00 2.29
4196 9883 8.141298 TCTATCCCAAAATAAGTGTCACTGTA 57.859 34.615 6.18 2.12 0.00 2.74
4197 9884 7.016153 TCTATCCCAAAATAAGTGTCACTGT 57.984 36.000 6.18 0.00 0.00 3.55
4198 9885 6.540189 CCTCTATCCCAAAATAAGTGTCACTG 59.460 42.308 6.18 0.00 0.00 3.66
4199 9886 6.353082 CCCTCTATCCCAAAATAAGTGTCACT 60.353 42.308 0.00 0.00 0.00 3.41
4200 9887 5.823045 CCCTCTATCCCAAAATAAGTGTCAC 59.177 44.000 0.00 0.00 0.00 3.67
4201 9888 5.729229 TCCCTCTATCCCAAAATAAGTGTCA 59.271 40.000 0.00 0.00 0.00 3.58
4202 9889 6.248569 TCCCTCTATCCCAAAATAAGTGTC 57.751 41.667 0.00 0.00 0.00 3.67
4203 9890 6.652205 TTCCCTCTATCCCAAAATAAGTGT 57.348 37.500 0.00 0.00 0.00 3.55
4204 9891 8.440771 AGTATTCCCTCTATCCCAAAATAAGTG 58.559 37.037 0.00 0.00 0.00 3.16
4205 9892 8.582891 AGTATTCCCTCTATCCCAAAATAAGT 57.417 34.615 0.00 0.00 0.00 2.24
4209 9896 9.411848 AGATAAGTATTCCCTCTATCCCAAAAT 57.588 33.333 0.00 0.00 0.00 1.82
4210 9897 8.660435 CAGATAAGTATTCCCTCTATCCCAAAA 58.340 37.037 0.00 0.00 0.00 2.44
4211 9898 7.237679 CCAGATAAGTATTCCCTCTATCCCAAA 59.762 40.741 0.00 0.00 0.00 3.28
4212 9899 6.730977 CCAGATAAGTATTCCCTCTATCCCAA 59.269 42.308 0.00 0.00 0.00 4.12
4213 9900 6.264528 CCAGATAAGTATTCCCTCTATCCCA 58.735 44.000 0.00 0.00 0.00 4.37
4214 9901 5.129650 GCCAGATAAGTATTCCCTCTATCCC 59.870 48.000 0.00 0.00 0.00 3.85
4215 9902 5.961421 AGCCAGATAAGTATTCCCTCTATCC 59.039 44.000 0.00 0.00 0.00 2.59
4216 9903 8.596781 TTAGCCAGATAAGTATTCCCTCTATC 57.403 38.462 0.00 0.00 0.00 2.08
4217 9904 9.207868 GATTAGCCAGATAAGTATTCCCTCTAT 57.792 37.037 0.00 0.00 0.00 1.98
4218 9905 8.402683 AGATTAGCCAGATAAGTATTCCCTCTA 58.597 37.037 0.00 0.00 0.00 2.43
4219 9906 7.252678 AGATTAGCCAGATAAGTATTCCCTCT 58.747 38.462 0.00 0.00 0.00 3.69
4220 9907 7.489239 AGATTAGCCAGATAAGTATTCCCTC 57.511 40.000 0.00 0.00 0.00 4.30
4221 9908 7.293535 ACAAGATTAGCCAGATAAGTATTCCCT 59.706 37.037 0.00 0.00 0.00 4.20
4222 9909 7.454225 ACAAGATTAGCCAGATAAGTATTCCC 58.546 38.462 0.00 0.00 0.00 3.97
4223 9910 9.425577 GTACAAGATTAGCCAGATAAGTATTCC 57.574 37.037 0.00 0.00 0.00 3.01
4224 9911 9.425577 GGTACAAGATTAGCCAGATAAGTATTC 57.574 37.037 0.00 0.00 0.00 1.75
4225 9912 8.376270 GGGTACAAGATTAGCCAGATAAGTATT 58.624 37.037 0.00 0.00 39.14 1.89
4226 9913 7.038231 GGGGTACAAGATTAGCCAGATAAGTAT 60.038 40.741 0.00 0.00 40.81 2.12
4227 9914 6.269307 GGGGTACAAGATTAGCCAGATAAGTA 59.731 42.308 0.00 0.00 40.81 2.24
4239 9926 3.521937 CCTTCCACAGGGGTACAAGATTA 59.478 47.826 0.00 0.00 39.39 1.75
4254 13901 4.142752 GCTACAACCGATAAAACCTTCCAC 60.143 45.833 0.00 0.00 0.00 4.02
4260 13907 6.673154 AATAGTGCTACAACCGATAAAACC 57.327 37.500 0.00 0.00 0.00 3.27
4311 13960 6.488006 ACAGTGCTCTAATCATGTCAGTTTTT 59.512 34.615 0.00 0.00 0.00 1.94
4378 14027 9.149225 TGCCATTTTACAATGATTTTGTGATAC 57.851 29.630 3.10 0.00 42.35 2.24
4379 14028 9.368674 CTGCCATTTTACAATGATTTTGTGATA 57.631 29.630 3.10 0.00 42.35 2.15
4380 14029 8.095792 TCTGCCATTTTACAATGATTTTGTGAT 58.904 29.630 3.10 0.00 42.35 3.06
4386 14041 9.118300 TGTTTTTCTGCCATTTTACAATGATTT 57.882 25.926 3.10 0.00 42.35 2.17
4389 14044 8.498054 TTTGTTTTTCTGCCATTTTACAATGA 57.502 26.923 3.10 0.00 42.35 2.57
4390 14045 7.856894 CCTTTGTTTTTCTGCCATTTTACAATG 59.143 33.333 0.00 0.00 39.79 2.82
4423 14208 5.022282 TCATCACTCACTGAAGTTGTCAA 57.978 39.130 0.00 0.00 35.22 3.18
4437 16928 2.957680 TCTCATCTCCAGCTCATCACTC 59.042 50.000 0.00 0.00 0.00 3.51
4483 17000 4.439289 GGGTGATGCTTAAAGATGCAAGTC 60.439 45.833 0.00 0.00 42.74 3.01
4484 17001 3.445096 GGGTGATGCTTAAAGATGCAAGT 59.555 43.478 0.00 0.00 42.74 3.16
4485 17002 3.444742 TGGGTGATGCTTAAAGATGCAAG 59.555 43.478 0.00 0.00 42.74 4.01
4543 17069 7.275888 AGCTGATGTAATTTGTTTCAACTGA 57.724 32.000 0.00 0.00 0.00 3.41
4548 17074 6.563422 GCCATAGCTGATGTAATTTGTTTCA 58.437 36.000 0.00 0.00 33.19 2.69
4641 17167 5.291128 CCGAATAAACAGTTGTAGCTAGTGG 59.709 44.000 0.00 0.00 0.00 4.00
4668 17195 3.450457 TGTTTGATGTGGGTTCTTTGCTT 59.550 39.130 0.00 0.00 0.00 3.91
4692 17219 1.968493 TGTAGCAGAAACCTTCGGAGT 59.032 47.619 0.00 0.00 34.02 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.