Multiple sequence alignment - TraesCS5B01G501100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G501100 chr5B 100.000 3826 0 0 1 3826 668460285 668464110 0.000000e+00 7066.0
1 TraesCS5B01G501100 chr5A 89.100 3679 269 66 1 3606 657536547 657540166 0.000000e+00 4451.0
2 TraesCS5B01G501100 chr5D 93.993 2447 100 16 660 3080 529525062 529527487 0.000000e+00 3661.0
3 TraesCS5B01G501100 chr5D 84.926 544 43 15 3075 3606 529532523 529533039 7.330000e-142 514.0
4 TraesCS5B01G501100 chr2B 79.778 1889 293 64 1067 2913 152472398 152474239 0.000000e+00 1290.0
5 TraesCS5B01G501100 chr2B 83.069 821 132 6 2017 2836 152609397 152608583 0.000000e+00 739.0
6 TraesCS5B01G501100 chr2B 84.180 512 67 13 1070 1576 152610597 152610095 5.750000e-133 484.0
7 TraesCS5B01G501100 chr2B 83.840 526 65 15 1070 1576 152570767 152570243 2.070000e-132 483.0
8 TraesCS5B01G501100 chr2B 74.207 694 152 17 2019 2694 152504352 152505036 8.150000e-67 265.0
9 TraesCS5B01G501100 chr2D 79.203 1957 311 75 995 2904 101365118 101363211 0.000000e+00 1271.0
10 TraesCS5B01G501100 chr2D 83.477 811 129 4 2017 2826 101378690 101377884 0.000000e+00 750.0
11 TraesCS5B01G501100 chr2D 83.846 520 67 12 1070 1576 100954921 100954406 2.670000e-131 479.0
12 TraesCS5B01G501100 chr4A 83.894 981 135 9 2019 2997 714276993 714277952 0.000000e+00 915.0
13 TraesCS5B01G501100 chr2A 80.424 1180 193 29 1660 2826 100651159 100650005 0.000000e+00 865.0
14 TraesCS5B01G501100 chr2A 84.971 519 60 16 1070 1576 100656900 100656388 9.480000e-141 510.0
15 TraesCS5B01G501100 chr2A 83.969 524 64 17 1070 1576 100633079 100632559 5.750000e-133 484.0
16 TraesCS5B01G501100 chr2A 82.745 255 37 7 1656 1908 100632455 100632206 1.790000e-53 220.0
17 TraesCS5B01G501100 chr2A 80.000 140 20 6 1742 1877 100628206 100628071 3.150000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G501100 chr5B 668460285 668464110 3825 False 7066.0 7066 100.0000 1 3826 1 chr5B.!!$F1 3825
1 TraesCS5B01G501100 chr5A 657536547 657540166 3619 False 4451.0 4451 89.1000 1 3606 1 chr5A.!!$F1 3605
2 TraesCS5B01G501100 chr5D 529525062 529527487 2425 False 3661.0 3661 93.9930 660 3080 1 chr5D.!!$F1 2420
3 TraesCS5B01G501100 chr5D 529532523 529533039 516 False 514.0 514 84.9260 3075 3606 1 chr5D.!!$F2 531
4 TraesCS5B01G501100 chr2B 152472398 152474239 1841 False 1290.0 1290 79.7780 1067 2913 1 chr2B.!!$F1 1846
5 TraesCS5B01G501100 chr2B 152608583 152610597 2014 True 611.5 739 83.6245 1070 2836 2 chr2B.!!$R2 1766
6 TraesCS5B01G501100 chr2B 152570243 152570767 524 True 483.0 483 83.8400 1070 1576 1 chr2B.!!$R1 506
7 TraesCS5B01G501100 chr2B 152504352 152505036 684 False 265.0 265 74.2070 2019 2694 1 chr2B.!!$F2 675
8 TraesCS5B01G501100 chr2D 101363211 101365118 1907 True 1271.0 1271 79.2030 995 2904 1 chr2D.!!$R2 1909
9 TraesCS5B01G501100 chr2D 101377884 101378690 806 True 750.0 750 83.4770 2017 2826 1 chr2D.!!$R3 809
10 TraesCS5B01G501100 chr2D 100954406 100954921 515 True 479.0 479 83.8460 1070 1576 1 chr2D.!!$R1 506
11 TraesCS5B01G501100 chr4A 714276993 714277952 959 False 915.0 915 83.8940 2019 2997 1 chr4A.!!$F1 978
12 TraesCS5B01G501100 chr2A 100650005 100651159 1154 True 865.0 865 80.4240 1660 2826 1 chr2A.!!$R2 1166
13 TraesCS5B01G501100 chr2A 100656388 100656900 512 True 510.0 510 84.9710 1070 1576 1 chr2A.!!$R3 506
14 TraesCS5B01G501100 chr2A 100632206 100633079 873 True 352.0 484 83.3570 1070 1908 2 chr2A.!!$R4 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 908 0.109365 CGGTCACTCTCAGCTCACAG 60.109 60.0 0.00 0.00 0.00 3.66 F
895 923 0.831288 ACTCTCAGCTCACAGGCAGT 60.831 55.0 0.00 0.00 34.17 4.40 F
2129 2612 0.899717 CAACCAAGGACACCATGGGG 60.900 60.0 14.08 14.08 45.64 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2612 1.153881 GAGCAGGTCGTTCCCGTAC 60.154 63.158 0.0 0.0 36.75 3.67 R
2249 2735 1.801913 GTGCGAGCTAGTGTCGTGG 60.802 63.158 15.3 0.0 39.69 4.94 R
3766 4294 0.037303 TTTGCTCTCCTCTGCCAAGG 59.963 55.000 0.0 0.0 37.81 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.624861 ACGCCTGCATTTGATAAAGAGAG 59.375 43.478 0.00 0.00 0.00 3.20
57 58 6.187125 TGCATTTGATAAAGAGAGCAAGTC 57.813 37.500 0.00 0.00 0.00 3.01
60 61 7.094075 TGCATTTGATAAAGAGAGCAAGTCATT 60.094 33.333 0.00 0.00 0.00 2.57
81 82 7.012799 GTCATTATTCAGATCCCCTCTTTTGTC 59.987 40.741 0.00 0.00 29.16 3.18
116 118 5.104900 TGCTTAAGGGAGAGTGATCCTTAAC 60.105 44.000 4.29 7.67 43.87 2.01
117 119 5.104900 GCTTAAGGGAGAGTGATCCTTAACA 60.105 44.000 4.29 0.00 43.87 2.41
141 143 7.672660 ACATTGGCATATGATCATCTTACCATT 59.327 33.333 12.53 9.42 0.00 3.16
277 279 4.394712 GAGGTGCAGGGTGGTCGG 62.395 72.222 0.00 0.00 0.00 4.79
283 285 2.997315 CAGGGTGGTCGGCAGAGA 60.997 66.667 0.00 0.00 0.00 3.10
291 293 0.670854 GGTCGGCAGAGACAAAGACC 60.671 60.000 8.17 0.00 42.62 3.85
324 326 5.545658 TCGCAAGATGTCCAAAGAATTAC 57.454 39.130 0.00 0.00 45.01 1.89
332 334 9.533831 AAGATGTCCAAAGAATTACCTTTACAT 57.466 29.630 7.33 7.33 37.72 2.29
341 343 4.818534 ATTACCTTTACATGCATGCTCG 57.181 40.909 26.53 12.20 0.00 5.03
352 354 3.586100 TGCATGCTCGTAACAGAAGTA 57.414 42.857 20.33 0.00 0.00 2.24
364 366 5.064452 CGTAACAGAAGTACCTCTACATCGT 59.936 44.000 0.00 0.00 0.00 3.73
374 376 1.671328 CTCTACATCGTCGCCTTGAGA 59.329 52.381 0.00 0.00 0.00 3.27
377 379 4.072839 TCTACATCGTCGCCTTGAGATAT 58.927 43.478 0.00 0.00 0.00 1.63
379 381 4.162096 ACATCGTCGCCTTGAGATATAC 57.838 45.455 0.00 0.00 0.00 1.47
383 386 5.258456 TCGTCGCCTTGAGATATACTTTT 57.742 39.130 0.00 0.00 0.00 2.27
388 391 7.306051 CGTCGCCTTGAGATATACTTTTTACTG 60.306 40.741 0.00 0.00 0.00 2.74
393 396 7.280205 CCTTGAGATATACTTTTTACTGCCGTT 59.720 37.037 0.00 0.00 0.00 4.44
405 408 3.578272 GCCGTTGCAACACACGGA 61.578 61.111 27.40 0.00 42.17 4.69
406 409 2.326550 CCGTTGCAACACACGGAC 59.673 61.111 28.01 0.24 42.17 4.79
415 418 0.383949 AACACACGGACATGTTTGCC 59.616 50.000 0.00 0.00 35.51 4.52
426 429 4.379082 GGACATGTTTGCCGGTAAACTAAG 60.379 45.833 36.94 29.19 40.36 2.18
429 432 5.299782 ACATGTTTGCCGGTAAACTAAGAAA 59.700 36.000 36.94 22.69 40.36 2.52
430 433 6.015772 ACATGTTTGCCGGTAAACTAAGAAAT 60.016 34.615 36.94 23.66 40.36 2.17
434 437 6.746745 TTGCCGGTAAACTAAGAAATAAGG 57.253 37.500 1.06 0.00 0.00 2.69
436 439 5.876460 TGCCGGTAAACTAAGAAATAAGGTC 59.124 40.000 1.90 0.00 0.00 3.85
448 451 6.732896 AGAAATAAGGTCTGATACATCCGT 57.267 37.500 0.00 0.00 0.00 4.69
461 464 1.618837 ACATCCGTAGTGCAAGACAGT 59.381 47.619 0.00 0.00 35.57 3.55
462 465 1.995484 CATCCGTAGTGCAAGACAGTG 59.005 52.381 0.00 0.00 32.79 3.66
463 466 1.037493 TCCGTAGTGCAAGACAGTGT 58.963 50.000 0.00 0.00 32.79 3.55
464 467 2.232399 TCCGTAGTGCAAGACAGTGTA 58.768 47.619 0.00 0.00 32.79 2.90
465 468 2.624364 TCCGTAGTGCAAGACAGTGTAA 59.376 45.455 0.00 0.00 32.79 2.41
466 469 3.257375 TCCGTAGTGCAAGACAGTGTAAT 59.743 43.478 0.00 0.00 32.79 1.89
468 471 3.612860 CGTAGTGCAAGACAGTGTAATCC 59.387 47.826 0.00 0.00 32.79 3.01
469 472 3.769739 AGTGCAAGACAGTGTAATCCA 57.230 42.857 0.00 0.00 0.00 3.41
470 473 3.403038 AGTGCAAGACAGTGTAATCCAC 58.597 45.455 0.00 2.20 44.89 4.02
501 504 6.480320 GTGGACATTGTATTCCTCTCATACAC 59.520 42.308 0.00 0.00 36.94 2.90
559 569 9.155975 CATATGCACAAAAGGGTATATCTAGAC 57.844 37.037 0.00 0.00 0.00 2.59
565 575 7.328737 CACAAAAGGGTATATCTAGACGTATGC 59.671 40.741 0.00 0.00 0.00 3.14
571 581 6.072064 GGGTATATCTAGACGTATGCACAAGT 60.072 42.308 0.00 0.00 0.00 3.16
572 582 7.022384 GGTATATCTAGACGTATGCACAAGTC 58.978 42.308 2.57 2.57 0.00 3.01
601 613 9.891828 TTGTTTTGTGTATGATGTTATCTTGAC 57.108 29.630 0.00 0.00 0.00 3.18
602 614 9.061435 TGTTTTGTGTATGATGTTATCTTGACA 57.939 29.630 0.00 0.00 0.00 3.58
603 615 9.546909 GTTTTGTGTATGATGTTATCTTGACAG 57.453 33.333 0.00 0.00 0.00 3.51
606 618 8.846943 TGTGTATGATGTTATCTTGACAGTTT 57.153 30.769 0.00 0.00 0.00 2.66
607 619 9.936759 TGTGTATGATGTTATCTTGACAGTTTA 57.063 29.630 0.00 0.00 0.00 2.01
647 659 9.661563 ATTTACTTTCGACATGTTGGACTAATA 57.338 29.630 13.27 0.00 0.00 0.98
648 660 9.491675 TTTACTTTCGACATGTTGGACTAATAA 57.508 29.630 13.27 3.09 0.00 1.40
649 661 9.661563 TTACTTTCGACATGTTGGACTAATAAT 57.338 29.630 13.27 0.00 0.00 1.28
692 705 4.620589 ACCATCATCTAATCCTGCTCAG 57.379 45.455 0.00 0.00 0.00 3.35
717 730 6.681777 CACTGCAAAGAAAGGCTAGTTAATT 58.318 36.000 0.00 0.00 0.00 1.40
841 859 1.586303 GCGTGCACGAGATCGATGA 60.586 57.895 41.19 0.00 43.02 2.92
845 863 2.282555 CGTGCACGAGATCGATGAAAAT 59.717 45.455 34.93 0.00 43.02 1.82
853 871 4.731961 CGAGATCGATGAAAATTTTGGCTG 59.268 41.667 8.47 0.00 43.02 4.85
859 877 4.491280 CGATGAAAATTTTGGCTGCATTCG 60.491 41.667 8.47 7.34 0.00 3.34
889 907 1.527433 CCGGTCACTCTCAGCTCACA 61.527 60.000 0.00 0.00 0.00 3.58
890 908 0.109365 CGGTCACTCTCAGCTCACAG 60.109 60.000 0.00 0.00 0.00 3.66
895 923 0.831288 ACTCTCAGCTCACAGGCAGT 60.831 55.000 0.00 0.00 34.17 4.40
914 942 4.228097 GCGCAGGCGTACATGCAG 62.228 66.667 15.64 8.15 42.68 4.41
915 943 3.566853 CGCAGGCGTACATGCAGG 61.567 66.667 5.34 0.00 42.68 4.85
916 944 2.436646 GCAGGCGTACATGCAGGT 60.437 61.111 9.77 9.77 42.11 4.00
917 945 2.464459 GCAGGCGTACATGCAGGTC 61.464 63.158 7.56 0.00 42.11 3.85
1236 1273 4.052518 GTCCCCATGGTGCAGCCT 62.053 66.667 14.36 0.00 38.35 4.58
1258 1295 4.908687 TGCGCGAATGGATCCCCG 62.909 66.667 12.10 11.35 34.29 5.73
1329 1395 4.008933 GCCGACCCTGTGCTCTGT 62.009 66.667 0.00 0.00 0.00 3.41
1330 1396 2.047844 CCGACCCTGTGCTCTGTG 60.048 66.667 0.00 0.00 0.00 3.66
1331 1397 2.047844 CGACCCTGTGCTCTGTGG 60.048 66.667 0.00 0.00 0.00 4.17
1579 1685 0.989890 CAAGCTCAAGGTACGTACGC 59.010 55.000 16.72 15.60 0.00 4.42
1585 1691 1.068333 TCAAGGTACGTACGCAGGAAC 60.068 52.381 16.72 6.00 0.00 3.62
1642 1756 3.433306 ACTTAACAGCTGCCATTGGTA 57.567 42.857 15.27 0.00 0.00 3.25
1924 2376 6.796705 TTTAGGTGCTTAACTACTTGCTTC 57.203 37.500 0.00 0.00 0.00 3.86
1960 2419 9.930693 TTTTGTAACTTGGTTCAAAACAATACT 57.069 25.926 0.00 0.00 32.98 2.12
1961 2420 8.918961 TTGTAACTTGGTTCAAAACAATACTG 57.081 30.769 0.00 0.00 0.00 2.74
2013 2496 4.603985 CATGTGTTCATGGAATTCGATGG 58.396 43.478 24.75 10.72 45.30 3.51
2129 2612 0.899717 CAACCAAGGACACCATGGGG 60.900 60.000 14.08 14.08 45.64 4.96
2249 2735 0.036858 AGACCTTCTTCTTCGCTGGC 60.037 55.000 0.00 0.00 0.00 4.85
2351 2837 2.574955 GGTGGTGAGAGAGTGCGGT 61.575 63.158 0.00 0.00 0.00 5.68
2364 2856 1.087771 GTGCGGTAATGAGGTTCCCG 61.088 60.000 0.00 0.00 41.50 5.14
2394 2886 4.036262 ACGTGCTCAACAAATTGAAGCTAA 59.964 37.500 16.00 0.00 44.28 3.09
2400 2892 6.183359 GCTCAACAAATTGAAGCTAATCAACG 60.183 38.462 2.97 0.00 44.28 4.10
2489 2981 2.509336 GAGGTCGGTGGCATCACG 60.509 66.667 0.00 0.33 44.50 4.35
2563 3055 1.132689 GGAGGTATGGGGAGAGGATGT 60.133 57.143 0.00 0.00 0.00 3.06
2920 3419 5.579511 ACACTAGATATGTTTGTGTAACCGC 59.420 40.000 0.00 0.00 39.65 5.68
2951 3450 0.469144 GTTTGGGCTCAGAAACCCCA 60.469 55.000 5.82 2.90 46.43 4.96
3012 3514 4.175516 CAAATAATTCATGCAAGCACGGT 58.824 39.130 0.00 0.00 0.00 4.83
3013 3515 2.917701 TAATTCATGCAAGCACGGTG 57.082 45.000 3.15 3.15 0.00 4.94
3096 3599 9.685276 TCATGTTCAATGATTCCTATAGTGTTT 57.315 29.630 0.00 0.00 0.00 2.83
3147 3650 4.338118 TGCTTTGTCCGAACTTTGAGAAAT 59.662 37.500 0.00 0.00 0.00 2.17
3168 3671 1.482593 CCTAAGTCCATGAAGTCGCCT 59.517 52.381 0.00 0.00 0.00 5.52
3193 3696 7.278724 TCTAAAATCTTCAACCAATCCCCTA 57.721 36.000 0.00 0.00 0.00 3.53
3208 3711 1.614317 CCCCTAGGCAAGAAACACTGG 60.614 57.143 2.05 0.00 0.00 4.00
3223 3726 8.045176 AGAAACACTGGATAATACAAAAGAGC 57.955 34.615 0.00 0.00 0.00 4.09
3280 3796 3.152341 CCCTCATGTGAGCAAAGAAAGT 58.848 45.455 4.48 0.00 40.75 2.66
3287 3803 7.108194 TCATGTGAGCAAAGAAAGTATGAGAT 58.892 34.615 0.00 0.00 0.00 2.75
3316 3835 3.691118 TGATTCTTCCTATGCAGTGCAAC 59.309 43.478 23.90 4.45 43.62 4.17
3326 3845 2.048023 CAGTGCAACCGCCATCCAT 61.048 57.895 0.00 0.00 37.80 3.41
3361 3880 5.759506 TTCGCCACATCTTTTGTTTCTTA 57.240 34.783 0.00 0.00 36.00 2.10
3495 4020 7.916552 TCTTGCTACTTACACTCAAGTTTTTC 58.083 34.615 0.00 0.00 39.45 2.29
3533 4059 8.779096 TTGAACCCTAAAACCTTAAACCAATA 57.221 30.769 0.00 0.00 0.00 1.90
3543 4069 7.727578 AACCTTAAACCAATAAATACCCAGG 57.272 36.000 0.00 0.00 0.00 4.45
3563 4091 0.606401 CACCAAGTCATCGCCAAGGT 60.606 55.000 0.00 0.00 0.00 3.50
3576 4104 1.599047 CAAGGTCAGGCGAGTGGAT 59.401 57.895 0.00 0.00 0.00 3.41
3593 4121 2.532843 GGATAAGCCATCCCCGTAGTA 58.467 52.381 3.93 0.00 46.85 1.82
3606 4134 0.380733 CGTAGTACGCTCCAGCATGA 59.619 55.000 10.19 0.00 42.21 3.07
3607 4135 1.001268 CGTAGTACGCTCCAGCATGAT 60.001 52.381 10.19 0.00 42.21 2.45
3608 4136 2.225727 CGTAGTACGCTCCAGCATGATA 59.774 50.000 10.19 0.00 42.21 2.15
3609 4137 2.802787 AGTACGCTCCAGCATGATAC 57.197 50.000 0.00 0.00 39.69 2.24
3610 4138 2.031870 AGTACGCTCCAGCATGATACA 58.968 47.619 0.00 0.00 39.69 2.29
3611 4139 2.430694 AGTACGCTCCAGCATGATACAA 59.569 45.455 0.00 0.00 39.69 2.41
3612 4140 1.656652 ACGCTCCAGCATGATACAAC 58.343 50.000 0.00 0.00 39.69 3.32
3613 4141 1.066215 ACGCTCCAGCATGATACAACA 60.066 47.619 0.00 0.00 39.69 3.33
3614 4142 1.328680 CGCTCCAGCATGATACAACAC 59.671 52.381 0.00 0.00 39.69 3.32
3615 4143 1.672881 GCTCCAGCATGATACAACACC 59.327 52.381 0.00 0.00 39.69 4.16
3616 4144 2.681976 GCTCCAGCATGATACAACACCT 60.682 50.000 0.00 0.00 39.69 4.00
3617 4145 3.614092 CTCCAGCATGATACAACACCTT 58.386 45.455 0.00 0.00 39.69 3.50
3618 4146 3.346315 TCCAGCATGATACAACACCTTG 58.654 45.455 0.00 0.00 39.69 3.61
3619 4147 2.424601 CCAGCATGATACAACACCTTGG 59.575 50.000 0.00 0.00 39.69 3.61
3620 4148 3.084039 CAGCATGATACAACACCTTGGT 58.916 45.455 0.00 0.00 39.69 3.67
3621 4149 3.084039 AGCATGATACAACACCTTGGTG 58.916 45.455 17.34 17.34 41.80 4.17
3622 4150 5.581112 CAGCATGATACAACACCTTGGTGT 61.581 45.833 18.69 18.69 46.17 4.16
3623 4151 7.326345 CAGCATGATACAACACCTTGGTGTC 62.326 48.000 23.58 12.51 41.81 3.67
3626 4154 4.868026 CAACACCTTGGTGTCCGA 57.132 55.556 23.58 0.00 36.42 4.55
3627 4155 3.322514 CAACACCTTGGTGTCCGAT 57.677 52.632 23.58 7.39 36.42 4.18
3628 4156 1.604604 CAACACCTTGGTGTCCGATT 58.395 50.000 23.58 7.03 36.42 3.34
3629 4157 1.953686 CAACACCTTGGTGTCCGATTT 59.046 47.619 23.58 6.34 36.42 2.17
3630 4158 2.358322 ACACCTTGGTGTCCGATTTT 57.642 45.000 18.69 0.00 30.83 1.82
3631 4159 2.661718 ACACCTTGGTGTCCGATTTTT 58.338 42.857 18.69 0.00 30.83 1.94
3632 4160 2.360801 ACACCTTGGTGTCCGATTTTTG 59.639 45.455 18.69 0.00 30.83 2.44
3633 4161 2.360801 CACCTTGGTGTCCGATTTTTGT 59.639 45.455 11.39 0.00 0.00 2.83
3634 4162 3.566322 CACCTTGGTGTCCGATTTTTGTA 59.434 43.478 11.39 0.00 0.00 2.41
3635 4163 3.566742 ACCTTGGTGTCCGATTTTTGTAC 59.433 43.478 0.00 0.00 0.00 2.90
3636 4164 3.566322 CCTTGGTGTCCGATTTTTGTACA 59.434 43.478 0.00 0.00 0.00 2.90
3637 4165 4.036971 CCTTGGTGTCCGATTTTTGTACAA 59.963 41.667 3.59 3.59 0.00 2.41
3638 4166 5.450688 CCTTGGTGTCCGATTTTTGTACAAA 60.451 40.000 17.01 17.01 0.00 2.83
3639 4167 5.176407 TGGTGTCCGATTTTTGTACAAAG 57.824 39.130 19.72 9.28 0.00 2.77
3640 4168 4.641094 TGGTGTCCGATTTTTGTACAAAGT 59.359 37.500 19.72 13.33 0.00 2.66
3641 4169 5.125739 TGGTGTCCGATTTTTGTACAAAGTT 59.874 36.000 19.72 12.03 0.00 2.66
3642 4170 5.457473 GGTGTCCGATTTTTGTACAAAGTTG 59.543 40.000 19.72 15.59 0.00 3.16
3643 4171 6.259638 GTGTCCGATTTTTGTACAAAGTTGA 58.740 36.000 19.72 11.22 0.00 3.18
3644 4172 6.413818 GTGTCCGATTTTTGTACAAAGTTGAG 59.586 38.462 19.72 11.11 0.00 3.02
3645 4173 6.316640 TGTCCGATTTTTGTACAAAGTTGAGA 59.683 34.615 19.72 12.97 0.00 3.27
3646 4174 7.012894 TGTCCGATTTTTGTACAAAGTTGAGAT 59.987 33.333 19.72 9.29 0.00 2.75
3647 4175 7.534239 GTCCGATTTTTGTACAAAGTTGAGATC 59.466 37.037 19.72 14.96 0.00 2.75
3648 4176 6.519761 CCGATTTTTGTACAAAGTTGAGATCG 59.480 38.462 19.72 22.29 0.00 3.69
3649 4177 7.287950 CGATTTTTGTACAAAGTTGAGATCGA 58.712 34.615 24.83 9.31 0.00 3.59
3650 4178 7.957484 CGATTTTTGTACAAAGTTGAGATCGAT 59.043 33.333 24.83 0.00 0.00 3.59
3651 4179 8.955061 ATTTTTGTACAAAGTTGAGATCGATG 57.045 30.769 19.72 0.00 0.00 3.84
3652 4180 6.480524 TTTGTACAAAGTTGAGATCGATGG 57.519 37.500 17.01 0.00 0.00 3.51
3653 4181 3.932710 TGTACAAAGTTGAGATCGATGGC 59.067 43.478 0.54 0.00 0.00 4.40
3654 4182 2.359900 ACAAAGTTGAGATCGATGGCC 58.640 47.619 0.54 0.00 0.00 5.36
3655 4183 2.290260 ACAAAGTTGAGATCGATGGCCA 60.290 45.455 8.56 8.56 0.00 5.36
3656 4184 2.749076 CAAAGTTGAGATCGATGGCCAA 59.251 45.455 10.96 0.00 0.00 4.52
3657 4185 2.787473 AGTTGAGATCGATGGCCAAA 57.213 45.000 10.96 0.00 0.00 3.28
3658 4186 3.071874 AGTTGAGATCGATGGCCAAAA 57.928 42.857 10.96 0.00 0.00 2.44
3659 4187 2.749621 AGTTGAGATCGATGGCCAAAAC 59.250 45.455 10.96 3.39 0.00 2.43
3660 4188 1.750193 TGAGATCGATGGCCAAAACC 58.250 50.000 10.96 0.00 0.00 3.27
3661 4189 1.025041 GAGATCGATGGCCAAAACCC 58.975 55.000 10.96 0.00 0.00 4.11
3662 4190 0.331278 AGATCGATGGCCAAAACCCA 59.669 50.000 10.96 0.00 36.66 4.51
3663 4191 1.063717 AGATCGATGGCCAAAACCCAT 60.064 47.619 10.96 0.00 45.47 4.00
3664 4192 1.067516 GATCGATGGCCAAAACCCATG 59.932 52.381 10.96 0.00 42.94 3.66
3665 4193 0.038890 TCGATGGCCAAAACCCATGA 59.961 50.000 10.96 0.00 42.94 3.07
3666 4194 0.894141 CGATGGCCAAAACCCATGAA 59.106 50.000 10.96 0.00 42.94 2.57
3667 4195 1.135024 CGATGGCCAAAACCCATGAAG 60.135 52.381 10.96 0.00 42.94 3.02
3668 4196 0.614812 ATGGCCAAAACCCATGAAGC 59.385 50.000 10.96 0.00 41.40 3.86
3669 4197 0.762082 TGGCCAAAACCCATGAAGCA 60.762 50.000 0.61 0.00 0.00 3.91
3670 4198 0.396060 GGCCAAAACCCATGAAGCAA 59.604 50.000 0.00 0.00 0.00 3.91
3671 4199 1.202746 GGCCAAAACCCATGAAGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
3672 4200 2.570135 GCCAAAACCCATGAAGCAAAA 58.430 42.857 0.00 0.00 0.00 2.44
3673 4201 2.549329 GCCAAAACCCATGAAGCAAAAG 59.451 45.455 0.00 0.00 0.00 2.27
3674 4202 3.807553 CCAAAACCCATGAAGCAAAAGT 58.192 40.909 0.00 0.00 0.00 2.66
3675 4203 3.560896 CCAAAACCCATGAAGCAAAAGTG 59.439 43.478 0.00 0.00 0.00 3.16
3676 4204 4.440880 CAAAACCCATGAAGCAAAAGTGA 58.559 39.130 0.00 0.00 0.00 3.41
3677 4205 3.733443 AACCCATGAAGCAAAAGTGAC 57.267 42.857 0.00 0.00 0.00 3.67
3678 4206 1.608590 ACCCATGAAGCAAAAGTGACG 59.391 47.619 0.00 0.00 0.00 4.35
3679 4207 1.879380 CCCATGAAGCAAAAGTGACGA 59.121 47.619 0.00 0.00 0.00 4.20
3680 4208 2.293122 CCCATGAAGCAAAAGTGACGAA 59.707 45.455 0.00 0.00 0.00 3.85
3681 4209 3.057315 CCCATGAAGCAAAAGTGACGAAT 60.057 43.478 0.00 0.00 0.00 3.34
3682 4210 3.916172 CCATGAAGCAAAAGTGACGAATG 59.084 43.478 0.00 0.00 0.00 2.67
3683 4211 3.624326 TGAAGCAAAAGTGACGAATGG 57.376 42.857 0.00 0.00 0.00 3.16
3684 4212 2.287547 TGAAGCAAAAGTGACGAATGGC 60.288 45.455 0.00 0.00 0.00 4.40
3685 4213 1.609208 AGCAAAAGTGACGAATGGCT 58.391 45.000 0.00 0.00 0.00 4.75
3686 4214 1.956477 AGCAAAAGTGACGAATGGCTT 59.044 42.857 0.00 0.00 0.00 4.35
3687 4215 2.362077 AGCAAAAGTGACGAATGGCTTT 59.638 40.909 0.00 0.00 33.20 3.51
3688 4216 3.123050 GCAAAAGTGACGAATGGCTTTT 58.877 40.909 0.00 0.00 40.46 2.27
3689 4217 4.037446 AGCAAAAGTGACGAATGGCTTTTA 59.963 37.500 0.00 0.00 38.58 1.52
3690 4218 4.742659 GCAAAAGTGACGAATGGCTTTTAA 59.257 37.500 0.00 0.00 38.58 1.52
3691 4219 5.332280 GCAAAAGTGACGAATGGCTTTTAAC 60.332 40.000 0.00 0.00 38.58 2.01
3692 4220 5.508200 AAAGTGACGAATGGCTTTTAACA 57.492 34.783 0.00 0.00 0.00 2.41
3693 4221 5.705609 AAGTGACGAATGGCTTTTAACAT 57.294 34.783 0.00 0.00 0.00 2.71
3694 4222 5.046910 AGTGACGAATGGCTTTTAACATG 57.953 39.130 0.00 0.00 0.00 3.21
3695 4223 4.518970 AGTGACGAATGGCTTTTAACATGT 59.481 37.500 0.00 0.00 0.00 3.21
3696 4224 4.616802 GTGACGAATGGCTTTTAACATGTG 59.383 41.667 0.00 0.00 0.00 3.21
3697 4225 4.277174 TGACGAATGGCTTTTAACATGTGT 59.723 37.500 0.00 0.00 0.00 3.72
3698 4226 4.794169 ACGAATGGCTTTTAACATGTGTC 58.206 39.130 0.00 0.00 0.00 3.67
3699 4227 3.845775 CGAATGGCTTTTAACATGTGTCG 59.154 43.478 0.00 0.00 0.00 4.35
3700 4228 4.612712 CGAATGGCTTTTAACATGTGTCGT 60.613 41.667 0.00 0.00 0.00 4.34
3701 4229 5.390040 CGAATGGCTTTTAACATGTGTCGTA 60.390 40.000 0.00 0.00 0.00 3.43
3702 4230 4.735662 TGGCTTTTAACATGTGTCGTAC 57.264 40.909 0.00 0.00 0.00 3.67
3703 4231 4.127907 TGGCTTTTAACATGTGTCGTACA 58.872 39.130 0.00 0.00 44.87 2.90
3704 4232 4.575236 TGGCTTTTAACATGTGTCGTACAA 59.425 37.500 0.00 0.00 43.77 2.41
3705 4233 5.066117 TGGCTTTTAACATGTGTCGTACAAA 59.934 36.000 0.00 0.00 43.77 2.83
3706 4234 5.623673 GGCTTTTAACATGTGTCGTACAAAG 59.376 40.000 0.00 2.21 43.77 2.77
3707 4235 6.423862 GCTTTTAACATGTGTCGTACAAAGA 58.576 36.000 0.00 0.00 43.77 2.52
3708 4236 6.908284 GCTTTTAACATGTGTCGTACAAAGAA 59.092 34.615 0.00 0.00 43.77 2.52
3709 4237 7.429920 GCTTTTAACATGTGTCGTACAAAGAAA 59.570 33.333 0.00 0.00 43.77 2.52
3710 4238 8.603983 TTTTAACATGTGTCGTACAAAGAAAC 57.396 30.769 0.00 0.00 43.77 2.78
3711 4239 4.806342 ACATGTGTCGTACAAAGAAACC 57.194 40.909 0.00 0.00 43.77 3.27
3712 4240 3.562557 ACATGTGTCGTACAAAGAAACCC 59.437 43.478 0.00 0.00 43.77 4.11
3713 4241 2.203401 TGTGTCGTACAAAGAAACCCG 58.797 47.619 0.00 0.00 36.06 5.28
3714 4242 1.528161 GTGTCGTACAAAGAAACCCGG 59.472 52.381 0.00 0.00 0.00 5.73
3715 4243 1.411977 TGTCGTACAAAGAAACCCGGA 59.588 47.619 0.73 0.00 0.00 5.14
3716 4244 2.037511 TGTCGTACAAAGAAACCCGGAT 59.962 45.455 0.73 0.00 0.00 4.18
3717 4245 3.257873 TGTCGTACAAAGAAACCCGGATA 59.742 43.478 0.73 0.00 0.00 2.59
3718 4246 4.081531 TGTCGTACAAAGAAACCCGGATAT 60.082 41.667 0.73 0.00 0.00 1.63
3719 4247 5.126869 TGTCGTACAAAGAAACCCGGATATA 59.873 40.000 0.73 0.00 0.00 0.86
3720 4248 6.042143 GTCGTACAAAGAAACCCGGATATAA 58.958 40.000 0.73 0.00 0.00 0.98
3721 4249 6.019559 GTCGTACAAAGAAACCCGGATATAAC 60.020 42.308 0.73 0.00 0.00 1.89
3722 4250 6.044682 CGTACAAAGAAACCCGGATATAACT 58.955 40.000 0.73 0.00 0.00 2.24
3723 4251 7.068103 TCGTACAAAGAAACCCGGATATAACTA 59.932 37.037 0.73 0.00 0.00 2.24
3724 4252 7.706179 CGTACAAAGAAACCCGGATATAACTAA 59.294 37.037 0.73 0.00 0.00 2.24
3725 4253 9.382275 GTACAAAGAAACCCGGATATAACTAAA 57.618 33.333 0.73 0.00 0.00 1.85
3727 4255 8.899771 ACAAAGAAACCCGGATATAACTAAATG 58.100 33.333 0.73 0.00 0.00 2.32
3728 4256 8.899771 CAAAGAAACCCGGATATAACTAAATGT 58.100 33.333 0.73 0.00 0.00 2.71
3729 4257 8.446599 AAGAAACCCGGATATAACTAAATGTG 57.553 34.615 0.73 0.00 0.00 3.21
3730 4258 6.485648 AGAAACCCGGATATAACTAAATGTGC 59.514 38.462 0.73 0.00 0.00 4.57
3731 4259 5.298989 ACCCGGATATAACTAAATGTGCA 57.701 39.130 0.73 0.00 0.00 4.57
3732 4260 5.686753 ACCCGGATATAACTAAATGTGCAA 58.313 37.500 0.73 0.00 0.00 4.08
3733 4261 5.529800 ACCCGGATATAACTAAATGTGCAAC 59.470 40.000 0.73 0.00 37.35 4.17
3757 4285 7.426410 ACAGTAGATATGTTGGACTTATGTCG 58.574 38.462 2.93 0.00 43.79 4.35
3758 4286 7.284716 ACAGTAGATATGTTGGACTTATGTCGA 59.715 37.037 2.93 0.00 43.79 4.20
3759 4287 8.135529 CAGTAGATATGTTGGACTTATGTCGAA 58.864 37.037 2.62 2.62 43.79 3.71
3760 4288 8.353684 AGTAGATATGTTGGACTTATGTCGAAG 58.646 37.037 6.47 0.00 43.79 3.79
3761 4289 7.348080 AGATATGTTGGACTTATGTCGAAGA 57.652 36.000 6.47 6.21 43.79 2.87
3762 4290 7.782049 AGATATGTTGGACTTATGTCGAAGAA 58.218 34.615 6.47 0.44 43.79 2.52
3763 4291 8.258007 AGATATGTTGGACTTATGTCGAAGAAA 58.742 33.333 6.47 0.00 43.79 2.52
3764 4292 6.727824 ATGTTGGACTTATGTCGAAGAAAG 57.272 37.500 6.47 0.00 43.79 2.62
3765 4293 5.607477 TGTTGGACTTATGTCGAAGAAAGT 58.393 37.500 6.47 7.12 43.79 2.66
3766 4294 5.694910 TGTTGGACTTATGTCGAAGAAAGTC 59.305 40.000 19.31 19.31 45.76 3.01
3770 4298 6.396459 GACTTATGTCGAAGAAAGTCCTTG 57.604 41.667 17.79 0.00 42.69 3.61
3771 4299 5.238583 ACTTATGTCGAAGAAAGTCCTTGG 58.761 41.667 0.00 0.00 39.69 3.61
3772 4300 1.878953 TGTCGAAGAAAGTCCTTGGC 58.121 50.000 0.00 0.00 39.69 4.52
3773 4301 1.140052 TGTCGAAGAAAGTCCTTGGCA 59.860 47.619 0.00 0.00 39.69 4.92
3774 4302 1.801178 GTCGAAGAAAGTCCTTGGCAG 59.199 52.381 0.00 0.00 39.69 4.85
3775 4303 1.691976 TCGAAGAAAGTCCTTGGCAGA 59.308 47.619 0.00 0.00 0.00 4.26
3776 4304 2.072298 CGAAGAAAGTCCTTGGCAGAG 58.928 52.381 0.00 0.00 0.00 3.35
3777 4305 2.431454 GAAGAAAGTCCTTGGCAGAGG 58.569 52.381 8.80 8.80 38.20 3.69
3778 4306 1.734655 AGAAAGTCCTTGGCAGAGGA 58.265 50.000 12.50 12.50 43.47 3.71
3779 4307 1.627834 AGAAAGTCCTTGGCAGAGGAG 59.372 52.381 15.70 0.00 46.18 3.69
3780 4308 1.625818 GAAAGTCCTTGGCAGAGGAGA 59.374 52.381 15.70 0.00 46.18 3.71
3781 4309 1.274712 AAGTCCTTGGCAGAGGAGAG 58.725 55.000 15.70 0.00 46.18 3.20
3782 4310 1.220477 GTCCTTGGCAGAGGAGAGC 59.780 63.158 15.70 4.59 46.18 4.09
3783 4311 1.229304 TCCTTGGCAGAGGAGAGCA 60.229 57.895 12.50 0.00 40.87 4.26
3784 4312 0.837691 TCCTTGGCAGAGGAGAGCAA 60.838 55.000 12.50 0.00 40.87 3.91
3785 4313 0.037303 CCTTGGCAGAGGAGAGCAAA 59.963 55.000 9.32 0.00 39.25 3.68
3786 4314 1.163554 CTTGGCAGAGGAGAGCAAAC 58.836 55.000 0.00 0.00 0.00 2.93
3787 4315 0.250901 TTGGCAGAGGAGAGCAAACC 60.251 55.000 0.00 0.00 0.00 3.27
3788 4316 1.377856 GGCAGAGGAGAGCAAACCC 60.378 63.158 0.00 0.00 0.00 4.11
3789 4317 1.682257 GCAGAGGAGAGCAAACCCT 59.318 57.895 0.00 0.00 0.00 4.34
3790 4318 0.905357 GCAGAGGAGAGCAAACCCTA 59.095 55.000 0.00 0.00 0.00 3.53
3791 4319 1.279271 GCAGAGGAGAGCAAACCCTAA 59.721 52.381 0.00 0.00 0.00 2.69
3792 4320 2.679349 GCAGAGGAGAGCAAACCCTAAG 60.679 54.545 0.00 0.00 0.00 2.18
3793 4321 2.569404 CAGAGGAGAGCAAACCCTAAGT 59.431 50.000 0.00 0.00 0.00 2.24
3794 4322 2.835156 AGAGGAGAGCAAACCCTAAGTC 59.165 50.000 0.00 0.00 0.00 3.01
3795 4323 2.567615 GAGGAGAGCAAACCCTAAGTCA 59.432 50.000 0.00 0.00 0.00 3.41
3796 4324 3.185455 AGGAGAGCAAACCCTAAGTCAT 58.815 45.455 0.00 0.00 0.00 3.06
3797 4325 3.054802 AGGAGAGCAAACCCTAAGTCATG 60.055 47.826 0.00 0.00 0.00 3.07
3798 4326 3.055094 GGAGAGCAAACCCTAAGTCATGA 60.055 47.826 0.00 0.00 0.00 3.07
3799 4327 4.187694 GAGAGCAAACCCTAAGTCATGAG 58.812 47.826 0.00 0.00 0.00 2.90
3800 4328 3.840666 AGAGCAAACCCTAAGTCATGAGA 59.159 43.478 0.00 0.00 0.00 3.27
3801 4329 3.935828 GAGCAAACCCTAAGTCATGAGAC 59.064 47.826 0.00 0.00 45.31 3.36
3802 4330 3.010420 GCAAACCCTAAGTCATGAGACC 58.990 50.000 0.00 0.00 46.15 3.85
3803 4331 3.307762 GCAAACCCTAAGTCATGAGACCT 60.308 47.826 0.00 0.00 46.15 3.85
3804 4332 4.081087 GCAAACCCTAAGTCATGAGACCTA 60.081 45.833 0.00 0.00 46.15 3.08
3805 4333 5.420409 CAAACCCTAAGTCATGAGACCTAC 58.580 45.833 0.00 0.00 46.15 3.18
3806 4334 4.611564 ACCCTAAGTCATGAGACCTACT 57.388 45.455 0.00 0.00 46.15 2.57
3807 4335 4.282496 ACCCTAAGTCATGAGACCTACTG 58.718 47.826 0.00 0.00 46.15 2.74
3808 4336 3.639094 CCCTAAGTCATGAGACCTACTGG 59.361 52.174 0.00 0.00 46.15 4.00
3809 4337 4.537751 CCTAAGTCATGAGACCTACTGGA 58.462 47.826 0.00 0.00 46.15 3.86
3810 4338 5.144100 CCTAAGTCATGAGACCTACTGGAT 58.856 45.833 0.00 0.00 46.15 3.41
3811 4339 6.307776 CCTAAGTCATGAGACCTACTGGATA 58.692 44.000 0.00 0.00 46.15 2.59
3812 4340 6.778069 CCTAAGTCATGAGACCTACTGGATAA 59.222 42.308 0.00 0.00 46.15 1.75
3813 4341 7.287927 CCTAAGTCATGAGACCTACTGGATAAA 59.712 40.741 0.00 0.00 46.15 1.40
3814 4342 7.496346 AAGTCATGAGACCTACTGGATAAAA 57.504 36.000 0.00 0.00 46.15 1.52
3815 4343 6.879400 AGTCATGAGACCTACTGGATAAAAC 58.121 40.000 0.00 0.00 46.15 2.43
3816 4344 6.670027 AGTCATGAGACCTACTGGATAAAACT 59.330 38.462 0.00 0.00 46.15 2.66
3817 4345 7.181125 AGTCATGAGACCTACTGGATAAAACTT 59.819 37.037 0.00 0.00 46.15 2.66
3818 4346 7.824779 GTCATGAGACCTACTGGATAAAACTTT 59.175 37.037 0.00 0.00 38.89 2.66
3819 4347 8.041323 TCATGAGACCTACTGGATAAAACTTTC 58.959 37.037 0.00 0.00 37.04 2.62
3820 4348 7.311092 TGAGACCTACTGGATAAAACTTTCA 57.689 36.000 0.00 0.00 37.04 2.69
3821 4349 7.918076 TGAGACCTACTGGATAAAACTTTCAT 58.082 34.615 0.00 0.00 37.04 2.57
3822 4350 7.824289 TGAGACCTACTGGATAAAACTTTCATG 59.176 37.037 0.00 0.00 37.04 3.07
3823 4351 6.599638 AGACCTACTGGATAAAACTTTCATGC 59.400 38.462 0.00 0.00 37.04 4.06
3824 4352 6.485171 ACCTACTGGATAAAACTTTCATGCT 58.515 36.000 0.00 0.00 37.04 3.79
3825 4353 6.375455 ACCTACTGGATAAAACTTTCATGCTG 59.625 38.462 0.00 0.00 37.04 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.924305 ATGCAGGCGTAATGATGAATTT 57.076 36.364 0.00 0.00 0.00 1.82
23 24 6.262944 TCTTTATCAAATGCAGGCGTAATGAT 59.737 34.615 14.93 14.93 0.00 2.45
29 30 3.609853 TCTCTTTATCAAATGCAGGCGT 58.390 40.909 0.00 0.00 0.00 5.68
30 31 3.547613 GCTCTCTTTATCAAATGCAGGCG 60.548 47.826 0.00 0.00 0.00 5.52
51 52 4.723309 AGGGGATCTGAATAATGACTTGC 58.277 43.478 0.00 0.00 0.00 4.01
57 58 7.013083 CAGACAAAAGAGGGGATCTGAATAATG 59.987 40.741 0.00 0.00 38.67 1.90
60 61 5.488919 ACAGACAAAAGAGGGGATCTGAATA 59.511 40.000 6.08 0.00 38.67 1.75
81 82 5.794894 TCTCCCTTAAGCAACTAAGAACAG 58.205 41.667 0.00 0.00 31.59 3.16
116 118 7.640597 ATGGTAAGATGATCATATGCCAATG 57.359 36.000 24.78 0.00 30.51 2.82
117 119 9.931698 ATAATGGTAAGATGATCATATGCCAAT 57.068 29.630 24.78 20.92 30.51 3.16
187 189 7.493320 CCACACAGTTAGTCAAAAGTACAGTAA 59.507 37.037 0.00 0.00 0.00 2.24
190 192 6.018994 GTCCACACAGTTAGTCAAAAGTACAG 60.019 42.308 0.00 0.00 0.00 2.74
277 279 0.250513 ATCGGGGTCTTTGTCTCTGC 59.749 55.000 0.00 0.00 0.00 4.26
283 285 0.693049 AGAAGCATCGGGGTCTTTGT 59.307 50.000 0.00 0.00 0.00 2.83
312 314 7.546358 CATGCATGTAAAGGTAATTCTTTGGA 58.454 34.615 18.91 0.00 37.51 3.53
313 315 6.256321 GCATGCATGTAAAGGTAATTCTTTGG 59.744 38.462 26.79 0.00 37.51 3.28
314 316 7.037438 AGCATGCATGTAAAGGTAATTCTTTG 58.963 34.615 26.79 0.00 37.51 2.77
324 326 3.373748 TGTTACGAGCATGCATGTAAAGG 59.626 43.478 26.41 14.39 0.00 3.11
332 334 2.455674 ACTTCTGTTACGAGCATGCA 57.544 45.000 21.98 0.00 0.00 3.96
341 343 6.434018 ACGATGTAGAGGTACTTCTGTTAC 57.566 41.667 17.23 8.39 41.55 2.50
352 354 0.456221 CAAGGCGACGATGTAGAGGT 59.544 55.000 0.00 0.00 0.00 3.85
364 366 6.479001 GCAGTAAAAAGTATATCTCAAGGCGA 59.521 38.462 0.00 0.00 0.00 5.54
388 391 3.578272 TCCGTGTGTTGCAACGGC 61.578 61.111 23.79 18.76 39.70 5.68
393 396 1.098869 AAACATGTCCGTGTGTTGCA 58.901 45.000 0.00 0.00 38.47 4.08
399 402 2.258013 CCGGCAAACATGTCCGTGT 61.258 57.895 19.57 0.00 41.46 4.49
400 403 0.951525 TACCGGCAAACATGTCCGTG 60.952 55.000 19.57 14.29 41.46 4.94
403 406 1.883926 AGTTTACCGGCAAACATGTCC 59.116 47.619 27.82 4.30 40.22 4.02
405 408 4.391155 TCTTAGTTTACCGGCAAACATGT 58.609 39.130 27.82 13.08 40.22 3.21
406 409 5.365403 TTCTTAGTTTACCGGCAAACATG 57.635 39.130 27.82 17.90 40.22 3.21
415 418 8.943909 ATCAGACCTTATTTCTTAGTTTACCG 57.056 34.615 0.00 0.00 0.00 4.02
426 429 7.595502 CACTACGGATGTATCAGACCTTATTTC 59.404 40.741 0.00 0.00 0.00 2.17
429 432 5.047943 GCACTACGGATGTATCAGACCTTAT 60.048 44.000 0.00 0.00 0.00 1.73
430 433 4.277672 GCACTACGGATGTATCAGACCTTA 59.722 45.833 0.00 0.00 0.00 2.69
434 437 3.710326 TGCACTACGGATGTATCAGAC 57.290 47.619 0.00 0.00 0.00 3.51
436 439 4.045104 GTCTTGCACTACGGATGTATCAG 58.955 47.826 0.00 0.00 0.00 2.90
442 445 1.995484 CACTGTCTTGCACTACGGATG 59.005 52.381 12.31 4.72 0.00 3.51
443 446 1.618837 ACACTGTCTTGCACTACGGAT 59.381 47.619 12.31 0.00 0.00 4.18
445 448 2.717580 TACACTGTCTTGCACTACGG 57.282 50.000 5.14 5.14 0.00 4.02
448 451 4.566004 GTGGATTACACTGTCTTGCACTA 58.434 43.478 8.03 0.00 46.72 2.74
468 471 5.649395 AGGAATACAATGTCCACTCAATGTG 59.351 40.000 0.00 0.00 45.80 3.21
469 472 5.819991 AGGAATACAATGTCCACTCAATGT 58.180 37.500 0.00 0.00 36.28 2.71
470 473 6.118170 AGAGGAATACAATGTCCACTCAATG 58.882 40.000 0.00 0.00 36.28 2.82
471 474 6.319048 AGAGGAATACAATGTCCACTCAAT 57.681 37.500 0.00 0.00 36.28 2.57
472 475 5.734720 GAGAGGAATACAATGTCCACTCAA 58.265 41.667 10.56 0.00 45.65 3.02
473 476 5.344743 GAGAGGAATACAATGTCCACTCA 57.655 43.478 10.56 0.00 45.65 3.41
474 477 5.344743 TGAGAGGAATACAATGTCCACTC 57.655 43.478 9.13 9.13 46.20 3.51
490 493 9.254133 CTTGTAATTGTCTATGTGTATGAGAGG 57.746 37.037 0.00 0.00 0.00 3.69
534 537 8.035394 CGTCTAGATATACCCTTTTGTGCATAT 58.965 37.037 0.00 0.00 0.00 1.78
535 538 7.014905 ACGTCTAGATATACCCTTTTGTGCATA 59.985 37.037 0.00 0.00 0.00 3.14
536 539 6.183360 ACGTCTAGATATACCCTTTTGTGCAT 60.183 38.462 0.00 0.00 0.00 3.96
538 541 5.598769 ACGTCTAGATATACCCTTTTGTGC 58.401 41.667 0.00 0.00 0.00 4.57
614 626 9.239002 CCAACATGTCGAAAGTAAATAAAACAA 57.761 29.630 0.00 0.00 0.00 2.83
615 627 8.622157 TCCAACATGTCGAAAGTAAATAAAACA 58.378 29.630 0.00 0.00 0.00 2.83
616 628 8.898792 GTCCAACATGTCGAAAGTAAATAAAAC 58.101 33.333 0.00 0.00 0.00 2.43
621 633 7.972832 TTAGTCCAACATGTCGAAAGTAAAT 57.027 32.000 0.00 0.00 0.00 1.40
648 660 9.693739 TGGTACATGGATTAACAATTAGTCAAT 57.306 29.630 0.00 0.00 0.00 2.57
692 705 1.882623 ACTAGCCTTTCTTTGCAGTGC 59.117 47.619 8.58 8.58 0.00 4.40
717 730 0.244450 CGTGCCCCGTTGACTAAGTA 59.756 55.000 0.00 0.00 0.00 2.24
741 755 2.028523 CGCAGATTTCAGTGACATCGTC 59.971 50.000 12.48 8.16 0.00 4.20
853 871 1.873572 GGGAAATGCGTGCGAATGC 60.874 57.895 0.00 0.00 43.20 3.56
859 877 3.053291 TGACCGGGAAATGCGTGC 61.053 61.111 6.32 0.00 0.00 5.34
890 908 4.508128 TACGCCTGCGCTACTGCC 62.508 66.667 9.73 0.00 44.19 4.85
895 923 2.584970 GCATGTACGCCTGCGCTA 60.585 61.111 9.73 0.79 44.19 4.26
905 933 0.801067 GACGACCGACCTGCATGTAC 60.801 60.000 0.00 0.00 0.00 2.90
914 942 2.814183 AATGTCAGCGACGACCGACC 62.814 60.000 0.00 0.00 41.76 4.79
915 943 1.007336 AAATGTCAGCGACGACCGAC 61.007 55.000 0.00 1.72 41.76 4.79
916 944 0.319211 AAAATGTCAGCGACGACCGA 60.319 50.000 0.00 0.00 41.76 4.69
917 945 0.093026 GAAAATGTCAGCGACGACCG 59.907 55.000 0.00 0.00 42.21 4.79
1236 1273 1.159713 GGATCCATTCGCGCATGTGA 61.160 55.000 17.27 13.75 0.00 3.58
1258 1295 2.344025 GATGAGTTTGGTACCGTGGAC 58.656 52.381 7.57 3.15 0.00 4.02
1329 1395 2.111669 CCTGCAGTGCACAGACCA 59.888 61.111 21.04 8.92 37.32 4.02
1330 1396 1.963338 GTCCTGCAGTGCACAGACC 60.963 63.158 23.98 12.03 37.32 3.85
1331 1397 2.313172 CGTCCTGCAGTGCACAGAC 61.313 63.158 24.33 24.33 37.32 3.51
1503 1609 3.966026 CTTCCACTCGTCGCCGTCC 62.966 68.421 0.00 0.00 35.01 4.79
1579 1685 1.071019 CGTCGATCGTGTGGTTCCTG 61.071 60.000 15.94 0.00 34.52 3.86
1601 1707 2.584418 CGCTGGAGCTGGATGACG 60.584 66.667 0.00 0.00 39.32 4.35
1642 1756 3.695606 ACCTGTCGCTCGTGCCAT 61.696 61.111 3.52 0.00 35.36 4.40
1645 1759 2.125912 ATCACCTGTCGCTCGTGC 60.126 61.111 0.00 0.00 0.00 5.34
1983 2442 1.202371 CCATGAACACATGCATGCTCC 60.202 52.381 26.53 13.32 40.33 4.70
2013 2496 1.739067 GTTGGCAGGTACCTGATGAC 58.261 55.000 40.26 28.55 46.30 3.06
2129 2612 1.153881 GAGCAGGTCGTTCCCGTAC 60.154 63.158 0.00 0.00 36.75 3.67
2249 2735 1.801913 GTGCGAGCTAGTGTCGTGG 60.802 63.158 15.30 0.00 39.69 4.94
2364 2856 3.712881 GTTGAGCACGTCACCGGC 61.713 66.667 0.00 0.00 38.78 6.13
2385 2877 4.213270 CAGGAACACGTTGATTAGCTTCAA 59.787 41.667 0.00 0.00 33.32 2.69
2394 2886 3.678056 TTCTAGCAGGAACACGTTGAT 57.322 42.857 0.00 0.00 0.00 2.57
2400 2892 5.172205 CCTAAGAGTTTCTAGCAGGAACAC 58.828 45.833 9.19 4.20 0.00 3.32
2563 3055 4.476113 ACCTGAGAGGATTGAATTCATGGA 59.524 41.667 9.40 0.00 37.67 3.41
2920 3419 4.517285 TGAGCCCAAACAAGAGCTTATAG 58.483 43.478 0.00 0.00 35.23 1.31
3012 3514 0.699399 TTGGAGGGGCGGTAAATTCA 59.301 50.000 0.00 0.00 0.00 2.57
3013 3515 1.100510 GTTGGAGGGGCGGTAAATTC 58.899 55.000 0.00 0.00 0.00 2.17
3023 3525 3.246112 TCGTGTGGGTTGGAGGGG 61.246 66.667 0.00 0.00 0.00 4.79
3147 3650 1.480954 GGCGACTTCATGGACTTAGGA 59.519 52.381 0.00 0.00 0.00 2.94
3168 3671 6.561294 AGGGGATTGGTTGAAGATTTTAGAA 58.439 36.000 0.00 0.00 0.00 2.10
3193 3696 5.815581 TGTATTATCCAGTGTTTCTTGCCT 58.184 37.500 0.00 0.00 0.00 4.75
3208 3711 4.584743 CCTTGGGGGCTCTTTTGTATTATC 59.415 45.833 0.00 0.00 0.00 1.75
3233 3740 2.356069 GGTCCAGAAGATCAAATTCCGC 59.644 50.000 0.00 0.00 0.00 5.54
3310 3826 1.139520 GAATGGATGGCGGTTGCAC 59.860 57.895 0.00 0.00 45.35 4.57
3311 3827 2.405805 CGAATGGATGGCGGTTGCA 61.406 57.895 0.00 0.00 45.35 4.08
3316 3835 1.527034 ATGAATCGAATGGATGGCGG 58.473 50.000 0.00 0.00 34.93 6.13
3326 3845 3.006247 TGTGGCGAATGAATGAATCGAA 58.994 40.909 0.00 0.00 38.82 3.71
3396 3915 4.881019 TTGGAGAAAGAGGAGTTCAGAG 57.119 45.455 0.00 0.00 0.00 3.35
3398 3917 4.068599 GGTTTGGAGAAAGAGGAGTTCAG 58.931 47.826 0.00 0.00 0.00 3.02
3399 3918 3.458118 TGGTTTGGAGAAAGAGGAGTTCA 59.542 43.478 0.00 0.00 0.00 3.18
3465 3986 5.836821 TGAGTGTAAGTAGCAAGATCGAT 57.163 39.130 0.00 0.00 0.00 3.59
3495 4020 1.543944 GGTTCAATGGGGGTGCCAAG 61.544 60.000 0.00 0.00 0.00 3.61
3533 4059 1.427368 TGACTTGGTGCCTGGGTATTT 59.573 47.619 0.00 0.00 0.00 1.40
3543 4069 1.503542 CTTGGCGATGACTTGGTGC 59.496 57.895 0.00 0.00 0.00 5.01
3563 4091 0.975556 TGGCTTATCCACTCGCCTGA 60.976 55.000 0.00 0.00 42.90 3.86
3576 4104 1.321474 CGTACTACGGGGATGGCTTA 58.679 55.000 0.26 0.00 38.08 3.09
3593 4121 1.066215 TGTTGTATCATGCTGGAGCGT 60.066 47.619 0.00 0.00 45.83 5.07
3613 4141 2.661718 ACAAAAATCGGACACCAAGGT 58.338 42.857 0.00 0.00 0.00 3.50
3614 4142 3.566322 TGTACAAAAATCGGACACCAAGG 59.434 43.478 0.00 0.00 0.00 3.61
3615 4143 4.822036 TGTACAAAAATCGGACACCAAG 57.178 40.909 0.00 0.00 0.00 3.61
3616 4144 5.125739 ACTTTGTACAAAAATCGGACACCAA 59.874 36.000 20.89 0.00 0.00 3.67
3617 4145 4.641094 ACTTTGTACAAAAATCGGACACCA 59.359 37.500 20.89 0.00 0.00 4.17
3618 4146 5.177725 ACTTTGTACAAAAATCGGACACC 57.822 39.130 20.89 0.00 0.00 4.16
3619 4147 6.259638 TCAACTTTGTACAAAAATCGGACAC 58.740 36.000 20.89 0.00 0.00 3.67
3620 4148 6.316640 TCTCAACTTTGTACAAAAATCGGACA 59.683 34.615 20.89 0.00 0.00 4.02
3621 4149 6.721321 TCTCAACTTTGTACAAAAATCGGAC 58.279 36.000 20.89 0.00 0.00 4.79
3622 4150 6.928979 TCTCAACTTTGTACAAAAATCGGA 57.071 33.333 20.89 13.51 0.00 4.55
3623 4151 6.519761 CGATCTCAACTTTGTACAAAAATCGG 59.480 38.462 20.89 11.83 0.00 4.18
3624 4152 7.287950 TCGATCTCAACTTTGTACAAAAATCG 58.712 34.615 20.89 22.21 0.00 3.34
3625 4153 9.055248 CATCGATCTCAACTTTGTACAAAAATC 57.945 33.333 20.89 14.43 0.00 2.17
3626 4154 8.023128 CCATCGATCTCAACTTTGTACAAAAAT 58.977 33.333 20.89 10.22 0.00 1.82
3627 4155 7.359595 CCATCGATCTCAACTTTGTACAAAAA 58.640 34.615 20.89 7.21 0.00 1.94
3628 4156 6.567701 GCCATCGATCTCAACTTTGTACAAAA 60.568 38.462 20.89 6.55 0.00 2.44
3629 4157 5.106712 GCCATCGATCTCAACTTTGTACAAA 60.107 40.000 19.53 19.53 0.00 2.83
3630 4158 4.391830 GCCATCGATCTCAACTTTGTACAA 59.608 41.667 3.59 3.59 0.00 2.41
3631 4159 3.932710 GCCATCGATCTCAACTTTGTACA 59.067 43.478 0.00 0.00 0.00 2.90
3632 4160 3.309954 GGCCATCGATCTCAACTTTGTAC 59.690 47.826 0.00 0.00 0.00 2.90
3633 4161 3.055458 TGGCCATCGATCTCAACTTTGTA 60.055 43.478 0.00 0.00 0.00 2.41
3634 4162 2.290260 TGGCCATCGATCTCAACTTTGT 60.290 45.455 0.00 0.00 0.00 2.83
3635 4163 2.358957 TGGCCATCGATCTCAACTTTG 58.641 47.619 0.00 0.00 0.00 2.77
3636 4164 2.787473 TGGCCATCGATCTCAACTTT 57.213 45.000 0.00 0.00 0.00 2.66
3637 4165 2.787473 TTGGCCATCGATCTCAACTT 57.213 45.000 6.09 0.00 0.00 2.66
3638 4166 2.749621 GTTTTGGCCATCGATCTCAACT 59.250 45.455 6.09 0.00 0.00 3.16
3639 4167 2.159379 GGTTTTGGCCATCGATCTCAAC 60.159 50.000 6.09 0.00 0.00 3.18
3640 4168 2.091541 GGTTTTGGCCATCGATCTCAA 58.908 47.619 6.09 0.00 0.00 3.02
3641 4169 1.681780 GGGTTTTGGCCATCGATCTCA 60.682 52.381 6.09 0.00 0.00 3.27
3642 4170 1.025041 GGGTTTTGGCCATCGATCTC 58.975 55.000 6.09 0.00 0.00 2.75
3643 4171 0.331278 TGGGTTTTGGCCATCGATCT 59.669 50.000 6.09 0.00 0.00 2.75
3644 4172 1.067516 CATGGGTTTTGGCCATCGATC 59.932 52.381 6.09 0.00 0.00 3.69
3645 4173 1.113788 CATGGGTTTTGGCCATCGAT 58.886 50.000 6.09 0.00 0.00 3.59
3646 4174 0.038890 TCATGGGTTTTGGCCATCGA 59.961 50.000 6.09 0.00 0.00 3.59
3647 4175 0.894141 TTCATGGGTTTTGGCCATCG 59.106 50.000 6.09 0.00 0.00 3.84
3648 4176 1.405933 GCTTCATGGGTTTTGGCCATC 60.406 52.381 6.09 0.00 0.00 3.51
3649 4177 0.614812 GCTTCATGGGTTTTGGCCAT 59.385 50.000 6.09 0.00 0.00 4.40
3650 4178 0.762082 TGCTTCATGGGTTTTGGCCA 60.762 50.000 0.00 0.00 0.00 5.36
3651 4179 0.396060 TTGCTTCATGGGTTTTGGCC 59.604 50.000 0.00 0.00 0.00 5.36
3652 4180 2.252976 TTTGCTTCATGGGTTTTGGC 57.747 45.000 0.00 0.00 0.00 4.52
3653 4181 3.560896 CACTTTTGCTTCATGGGTTTTGG 59.439 43.478 0.00 0.00 0.00 3.28
3654 4182 4.270808 GTCACTTTTGCTTCATGGGTTTTG 59.729 41.667 0.00 0.00 0.00 2.44
3655 4183 4.441792 GTCACTTTTGCTTCATGGGTTTT 58.558 39.130 0.00 0.00 0.00 2.43
3656 4184 3.490761 CGTCACTTTTGCTTCATGGGTTT 60.491 43.478 0.00 0.00 0.00 3.27
3657 4185 2.034558 CGTCACTTTTGCTTCATGGGTT 59.965 45.455 0.00 0.00 0.00 4.11
3658 4186 1.608590 CGTCACTTTTGCTTCATGGGT 59.391 47.619 0.00 0.00 0.00 4.51
3659 4187 1.879380 TCGTCACTTTTGCTTCATGGG 59.121 47.619 0.00 0.00 0.00 4.00
3660 4188 3.624326 TTCGTCACTTTTGCTTCATGG 57.376 42.857 0.00 0.00 0.00 3.66
3661 4189 3.916172 CCATTCGTCACTTTTGCTTCATG 59.084 43.478 0.00 0.00 0.00 3.07
3662 4190 3.612479 GCCATTCGTCACTTTTGCTTCAT 60.612 43.478 0.00 0.00 0.00 2.57
3663 4191 2.287547 GCCATTCGTCACTTTTGCTTCA 60.288 45.455 0.00 0.00 0.00 3.02
3664 4192 2.030805 AGCCATTCGTCACTTTTGCTTC 60.031 45.455 0.00 0.00 0.00 3.86
3665 4193 1.956477 AGCCATTCGTCACTTTTGCTT 59.044 42.857 0.00 0.00 0.00 3.91
3666 4194 1.609208 AGCCATTCGTCACTTTTGCT 58.391 45.000 0.00 0.00 0.00 3.91
3667 4195 2.422276 AAGCCATTCGTCACTTTTGC 57.578 45.000 0.00 0.00 0.00 3.68
3668 4196 5.746245 TGTTAAAAGCCATTCGTCACTTTTG 59.254 36.000 9.24 0.00 41.21 2.44
3669 4197 5.897050 TGTTAAAAGCCATTCGTCACTTTT 58.103 33.333 0.00 0.00 42.99 2.27
3670 4198 5.508200 TGTTAAAAGCCATTCGTCACTTT 57.492 34.783 0.00 0.00 33.92 2.66
3671 4199 5.009610 ACATGTTAAAAGCCATTCGTCACTT 59.990 36.000 0.00 0.00 0.00 3.16
3672 4200 4.518970 ACATGTTAAAAGCCATTCGTCACT 59.481 37.500 0.00 0.00 0.00 3.41
3673 4201 4.616802 CACATGTTAAAAGCCATTCGTCAC 59.383 41.667 0.00 0.00 0.00 3.67
3674 4202 4.277174 ACACATGTTAAAAGCCATTCGTCA 59.723 37.500 0.00 0.00 0.00 4.35
3675 4203 4.794169 ACACATGTTAAAAGCCATTCGTC 58.206 39.130 0.00 0.00 0.00 4.20
3676 4204 4.612712 CGACACATGTTAAAAGCCATTCGT 60.613 41.667 0.00 0.00 0.00 3.85
3677 4205 3.845775 CGACACATGTTAAAAGCCATTCG 59.154 43.478 0.00 0.00 0.00 3.34
3678 4206 4.794169 ACGACACATGTTAAAAGCCATTC 58.206 39.130 0.00 0.00 0.00 2.67
3679 4207 4.846779 ACGACACATGTTAAAAGCCATT 57.153 36.364 0.00 0.00 0.00 3.16
3680 4208 4.757657 TGTACGACACATGTTAAAAGCCAT 59.242 37.500 0.00 0.00 30.04 4.40
3681 4209 4.127907 TGTACGACACATGTTAAAAGCCA 58.872 39.130 0.00 0.00 30.04 4.75
3682 4210 4.735662 TGTACGACACATGTTAAAAGCC 57.264 40.909 0.00 0.00 30.04 4.35
3683 4211 6.423862 TCTTTGTACGACACATGTTAAAAGC 58.576 36.000 0.00 0.00 36.90 3.51
3684 4212 8.730427 GTTTCTTTGTACGACACATGTTAAAAG 58.270 33.333 0.00 0.00 36.90 2.27
3685 4213 7.697291 GGTTTCTTTGTACGACACATGTTAAAA 59.303 33.333 0.00 0.00 36.90 1.52
3686 4214 7.188157 GGTTTCTTTGTACGACACATGTTAAA 58.812 34.615 0.00 0.00 36.90 1.52
3687 4215 6.238429 GGGTTTCTTTGTACGACACATGTTAA 60.238 38.462 0.00 0.00 36.90 2.01
3688 4216 5.236911 GGGTTTCTTTGTACGACACATGTTA 59.763 40.000 0.00 0.00 36.90 2.41
3689 4217 4.035909 GGGTTTCTTTGTACGACACATGTT 59.964 41.667 0.00 0.00 36.90 2.71
3690 4218 3.562557 GGGTTTCTTTGTACGACACATGT 59.437 43.478 0.00 0.00 36.90 3.21
3691 4219 3.363575 CGGGTTTCTTTGTACGACACATG 60.364 47.826 0.00 0.00 36.90 3.21
3692 4220 2.803956 CGGGTTTCTTTGTACGACACAT 59.196 45.455 0.00 0.00 36.90 3.21
3693 4221 2.203401 CGGGTTTCTTTGTACGACACA 58.797 47.619 0.00 0.00 34.51 3.72
3694 4222 1.528161 CCGGGTTTCTTTGTACGACAC 59.472 52.381 0.00 0.00 0.00 3.67
3695 4223 1.411977 TCCGGGTTTCTTTGTACGACA 59.588 47.619 0.00 0.00 0.00 4.35
3696 4224 2.153366 TCCGGGTTTCTTTGTACGAC 57.847 50.000 0.00 0.00 0.00 4.34
3697 4225 4.741321 ATATCCGGGTTTCTTTGTACGA 57.259 40.909 0.00 0.00 0.00 3.43
3698 4226 6.044682 AGTTATATCCGGGTTTCTTTGTACG 58.955 40.000 0.00 0.00 0.00 3.67
3699 4227 8.947055 TTAGTTATATCCGGGTTTCTTTGTAC 57.053 34.615 0.00 0.00 0.00 2.90
3701 4229 8.899771 CATTTAGTTATATCCGGGTTTCTTTGT 58.100 33.333 0.00 0.00 0.00 2.83
3702 4230 8.899771 ACATTTAGTTATATCCGGGTTTCTTTG 58.100 33.333 0.00 0.00 0.00 2.77
3703 4231 8.899771 CACATTTAGTTATATCCGGGTTTCTTT 58.100 33.333 0.00 0.00 0.00 2.52
3704 4232 7.012989 GCACATTTAGTTATATCCGGGTTTCTT 59.987 37.037 0.00 0.00 0.00 2.52
3705 4233 6.485648 GCACATTTAGTTATATCCGGGTTTCT 59.514 38.462 0.00 0.00 0.00 2.52
3706 4234 6.261381 TGCACATTTAGTTATATCCGGGTTTC 59.739 38.462 0.00 0.00 0.00 2.78
3707 4235 6.123651 TGCACATTTAGTTATATCCGGGTTT 58.876 36.000 0.00 0.00 0.00 3.27
3708 4236 5.686753 TGCACATTTAGTTATATCCGGGTT 58.313 37.500 0.00 0.00 0.00 4.11
3709 4237 5.298989 TGCACATTTAGTTATATCCGGGT 57.701 39.130 0.00 0.00 0.00 5.28
3710 4238 5.529430 TGTTGCACATTTAGTTATATCCGGG 59.471 40.000 0.00 0.00 0.00 5.73
3711 4239 6.260050 ACTGTTGCACATTTAGTTATATCCGG 59.740 38.462 0.00 0.00 0.00 5.14
3712 4240 7.246674 ACTGTTGCACATTTAGTTATATCCG 57.753 36.000 0.00 0.00 0.00 4.18
3713 4241 9.542462 TCTACTGTTGCACATTTAGTTATATCC 57.458 33.333 0.00 0.00 0.00 2.59
3718 4246 9.884636 ACATATCTACTGTTGCACATTTAGTTA 57.115 29.630 0.00 0.00 0.00 2.24
3719 4247 8.792830 ACATATCTACTGTTGCACATTTAGTT 57.207 30.769 0.00 0.00 0.00 2.24
3720 4248 8.668353 CAACATATCTACTGTTGCACATTTAGT 58.332 33.333 3.53 0.00 44.78 2.24
3724 4252 8.014217 AGTCCAACATATCTACTGTTGCACATT 61.014 37.037 11.52 0.00 44.20 2.71
3725 4253 6.577039 AGTCCAACATATCTACTGTTGCACAT 60.577 38.462 11.52 0.00 44.20 3.21
3726 4254 5.279960 AGTCCAACATATCTACTGTTGCACA 60.280 40.000 11.52 0.00 44.20 4.57
3731 4259 7.921214 CGACATAAGTCCAACATATCTACTGTT 59.079 37.037 0.00 0.00 41.87 3.16
3732 4260 7.284716 TCGACATAAGTCCAACATATCTACTGT 59.715 37.037 0.00 0.00 41.87 3.55
3733 4261 7.649057 TCGACATAAGTCCAACATATCTACTG 58.351 38.462 0.00 0.00 41.87 2.74
3734 4262 7.818997 TCGACATAAGTCCAACATATCTACT 57.181 36.000 0.00 0.00 41.87 2.57
3735 4263 8.350722 TCTTCGACATAAGTCCAACATATCTAC 58.649 37.037 0.00 0.00 41.87 2.59
3736 4264 8.459911 TCTTCGACATAAGTCCAACATATCTA 57.540 34.615 0.00 0.00 41.87 1.98
3737 4265 7.348080 TCTTCGACATAAGTCCAACATATCT 57.652 36.000 0.00 0.00 41.87 1.98
3738 4266 8.420374 TTTCTTCGACATAAGTCCAACATATC 57.580 34.615 0.00 0.00 41.87 1.63
3739 4267 8.041323 ACTTTCTTCGACATAAGTCCAACATAT 58.959 33.333 0.00 0.00 41.87 1.78
3740 4268 7.383687 ACTTTCTTCGACATAAGTCCAACATA 58.616 34.615 0.00 0.00 41.87 2.29
3741 4269 6.231211 ACTTTCTTCGACATAAGTCCAACAT 58.769 36.000 0.00 0.00 41.87 2.71
3742 4270 5.607477 ACTTTCTTCGACATAAGTCCAACA 58.393 37.500 0.00 0.00 41.87 3.33
3743 4271 6.154451 GACTTTCTTCGACATAAGTCCAAC 57.846 41.667 16.29 0.16 41.87 3.77
3747 4275 5.348997 CCAAGGACTTTCTTCGACATAAGTC 59.651 44.000 17.85 17.85 43.50 3.01
3748 4276 5.238583 CCAAGGACTTTCTTCGACATAAGT 58.761 41.667 5.25 5.25 33.78 2.24
3749 4277 4.093556 GCCAAGGACTTTCTTCGACATAAG 59.906 45.833 0.00 0.00 0.00 1.73
3750 4278 4.000988 GCCAAGGACTTTCTTCGACATAA 58.999 43.478 0.00 0.00 0.00 1.90
3751 4279 3.007506 TGCCAAGGACTTTCTTCGACATA 59.992 43.478 0.00 0.00 0.00 2.29
3752 4280 2.224523 TGCCAAGGACTTTCTTCGACAT 60.225 45.455 0.00 0.00 0.00 3.06
3753 4281 1.140052 TGCCAAGGACTTTCTTCGACA 59.860 47.619 0.00 0.00 0.00 4.35
3754 4282 1.801178 CTGCCAAGGACTTTCTTCGAC 59.199 52.381 0.00 0.00 0.00 4.20
3755 4283 1.691976 TCTGCCAAGGACTTTCTTCGA 59.308 47.619 0.00 0.00 0.00 3.71
3756 4284 2.072298 CTCTGCCAAGGACTTTCTTCG 58.928 52.381 0.00 0.00 0.00 3.79
3757 4285 2.039084 TCCTCTGCCAAGGACTTTCTTC 59.961 50.000 0.13 0.00 40.60 2.87
3758 4286 2.039613 CTCCTCTGCCAAGGACTTTCTT 59.960 50.000 0.13 0.00 40.60 2.52
3759 4287 1.627834 CTCCTCTGCCAAGGACTTTCT 59.372 52.381 0.13 0.00 40.60 2.52
3760 4288 1.625818 TCTCCTCTGCCAAGGACTTTC 59.374 52.381 0.13 0.00 40.60 2.62
3761 4289 1.627834 CTCTCCTCTGCCAAGGACTTT 59.372 52.381 0.13 0.00 40.60 2.66
3762 4290 1.274712 CTCTCCTCTGCCAAGGACTT 58.725 55.000 0.13 0.00 40.60 3.01
3763 4291 1.264045 GCTCTCCTCTGCCAAGGACT 61.264 60.000 0.13 0.00 40.60 3.85
3764 4292 1.220477 GCTCTCCTCTGCCAAGGAC 59.780 63.158 0.13 0.00 40.60 3.85
3765 4293 0.837691 TTGCTCTCCTCTGCCAAGGA 60.838 55.000 4.28 4.28 43.30 3.36
3766 4294 0.037303 TTTGCTCTCCTCTGCCAAGG 59.963 55.000 0.00 0.00 37.81 3.61
3767 4295 1.163554 GTTTGCTCTCCTCTGCCAAG 58.836 55.000 0.00 0.00 0.00 3.61
3768 4296 0.250901 GGTTTGCTCTCCTCTGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
3769 4297 1.376466 GGTTTGCTCTCCTCTGCCA 59.624 57.895 0.00 0.00 0.00 4.92
3770 4298 1.377856 GGGTTTGCTCTCCTCTGCC 60.378 63.158 0.00 0.00 0.00 4.85
3771 4299 0.905357 TAGGGTTTGCTCTCCTCTGC 59.095 55.000 0.00 0.00 32.46 4.26
3772 4300 2.569404 ACTTAGGGTTTGCTCTCCTCTG 59.431 50.000 0.00 0.00 32.46 3.35
3773 4301 2.835156 GACTTAGGGTTTGCTCTCCTCT 59.165 50.000 0.00 0.00 32.46 3.69
3774 4302 2.567615 TGACTTAGGGTTTGCTCTCCTC 59.432 50.000 0.00 0.00 32.46 3.71
3775 4303 2.621070 TGACTTAGGGTTTGCTCTCCT 58.379 47.619 0.00 0.00 34.85 3.69
3776 4304 3.055094 TCATGACTTAGGGTTTGCTCTCC 60.055 47.826 0.00 0.00 0.00 3.71
3777 4305 4.081420 TCTCATGACTTAGGGTTTGCTCTC 60.081 45.833 0.00 0.00 0.00 3.20
3778 4306 3.840666 TCTCATGACTTAGGGTTTGCTCT 59.159 43.478 0.00 0.00 0.00 4.09
3779 4307 3.935828 GTCTCATGACTTAGGGTTTGCTC 59.064 47.826 0.00 0.00 39.94 4.26
3780 4308 3.307762 GGTCTCATGACTTAGGGTTTGCT 60.308 47.826 0.00 0.00 42.54 3.91
3781 4309 3.010420 GGTCTCATGACTTAGGGTTTGC 58.990 50.000 0.00 0.00 42.54 3.68
3782 4310 4.559862 AGGTCTCATGACTTAGGGTTTG 57.440 45.455 0.00 0.00 42.54 2.93
3783 4311 5.187967 CAGTAGGTCTCATGACTTAGGGTTT 59.812 44.000 0.00 0.00 42.54 3.27
3784 4312 4.712337 CAGTAGGTCTCATGACTTAGGGTT 59.288 45.833 0.00 0.00 42.54 4.11
3785 4313 4.282496 CAGTAGGTCTCATGACTTAGGGT 58.718 47.826 0.00 0.00 42.54 4.34
3786 4314 3.639094 CCAGTAGGTCTCATGACTTAGGG 59.361 52.174 0.00 0.00 42.54 3.53
3787 4315 4.537751 TCCAGTAGGTCTCATGACTTAGG 58.462 47.826 0.00 0.00 42.54 2.69
3788 4316 7.825331 TTATCCAGTAGGTCTCATGACTTAG 57.175 40.000 0.00 0.00 42.54 2.18
3789 4317 8.475639 GTTTTATCCAGTAGGTCTCATGACTTA 58.524 37.037 0.00 0.00 42.54 2.24
3790 4318 7.181125 AGTTTTATCCAGTAGGTCTCATGACTT 59.819 37.037 0.00 0.00 42.54 3.01
3791 4319 6.670027 AGTTTTATCCAGTAGGTCTCATGACT 59.330 38.462 0.00 0.00 42.54 3.41
3792 4320 6.879400 AGTTTTATCCAGTAGGTCTCATGAC 58.121 40.000 0.00 0.00 42.22 3.06
3793 4321 7.496346 AAGTTTTATCCAGTAGGTCTCATGA 57.504 36.000 0.00 0.00 35.89 3.07
3794 4322 7.824289 TGAAAGTTTTATCCAGTAGGTCTCATG 59.176 37.037 0.00 0.00 35.89 3.07
3795 4323 7.918076 TGAAAGTTTTATCCAGTAGGTCTCAT 58.082 34.615 0.00 0.00 35.89 2.90
3796 4324 7.311092 TGAAAGTTTTATCCAGTAGGTCTCA 57.689 36.000 0.00 0.00 35.89 3.27
3797 4325 7.201652 GCATGAAAGTTTTATCCAGTAGGTCTC 60.202 40.741 0.00 0.00 35.89 3.36
3798 4326 6.599638 GCATGAAAGTTTTATCCAGTAGGTCT 59.400 38.462 0.00 0.00 35.89 3.85
3799 4327 6.599638 AGCATGAAAGTTTTATCCAGTAGGTC 59.400 38.462 0.00 0.00 35.89 3.85
3800 4328 6.375455 CAGCATGAAAGTTTTATCCAGTAGGT 59.625 38.462 0.00 0.00 39.69 3.08
3801 4329 6.789262 CAGCATGAAAGTTTTATCCAGTAGG 58.211 40.000 0.00 0.00 39.69 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.