Multiple sequence alignment - TraesCS5B01G501000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G501000 chr5B 100.000 3178 0 0 1 3178 668203163 668199986 0.000000e+00 5869.0
1 TraesCS5B01G501000 chr5B 100.000 199 0 0 3513 3711 668199651 668199453 5.860000e-98 368.0
2 TraesCS5B01G501000 chr5B 91.748 206 10 2 3513 3711 387881962 387881757 2.820000e-71 279.0
3 TraesCS5B01G501000 chr5B 96.875 32 1 0 509 540 40991057 40991026 2.000000e-03 54.7
4 TraesCS5B01G501000 chr5D 92.763 2114 71 28 626 2705 529361219 529359154 0.000000e+00 2981.0
5 TraesCS5B01G501000 chr5D 82.507 343 43 9 2851 3178 348346076 348345736 6.070000e-73 285.0
6 TraesCS5B01G501000 chr5D 80.000 80 14 2 2855 2932 417388387 417388308 1.440000e-04 58.4
7 TraesCS5B01G501000 chr5D 100.000 28 0 0 513 540 520880647 520880620 7.000000e-03 52.8
8 TraesCS5B01G501000 chr5A 90.567 1940 107 28 771 2697 657498868 657496992 0.000000e+00 2499.0
9 TraesCS5B01G501000 chr5A 86.988 561 54 7 1 545 644102422 644102979 6.810000e-172 614.0
10 TraesCS5B01G501000 chr2D 90.642 545 34 7 16 545 570125396 570125938 0.000000e+00 708.0
11 TraesCS5B01G501000 chr2D 82.596 339 43 8 2855 3178 152005402 152005065 6.070000e-73 285.0
12 TraesCS5B01G501000 chr2D 100.000 28 0 0 513 540 632768226 632768199 7.000000e-03 52.8
13 TraesCS5B01G501000 chr2D 100.000 28 0 0 513 540 632768300 632768327 7.000000e-03 52.8
14 TraesCS5B01G501000 chr4A 89.606 558 42 5 1 544 620744868 620745423 0.000000e+00 695.0
15 TraesCS5B01G501000 chr6B 86.709 632 54 15 1 609 134390632 134391256 0.000000e+00 675.0
16 TraesCS5B01G501000 chr6B 88.971 544 44 5 16 545 704394211 704393670 0.000000e+00 658.0
17 TraesCS5B01G501000 chr6B 89.735 302 16 8 2847 3134 605802711 605803011 4.530000e-99 372.0
18 TraesCS5B01G501000 chr6B 95.980 199 8 0 3513 3711 605820662 605820464 1.290000e-84 324.0
19 TraesCS5B01G501000 chr6B 90.323 62 6 0 482 543 704406330 704406391 8.540000e-12 82.4
20 TraesCS5B01G501000 chr4D 89.154 544 43 5 16 545 8878153 8878694 0.000000e+00 664.0
21 TraesCS5B01G501000 chr4D 100.000 28 0 0 1 28 8878105 8878132 7.000000e-03 52.8
22 TraesCS5B01G501000 chr7D 88.419 544 46 5 16 544 156195597 156195056 1.120000e-179 640.0
23 TraesCS5B01G501000 chr7D 79.271 439 70 15 116 545 305154778 305154352 1.690000e-73 287.0
24 TraesCS5B01G501000 chr7D 81.361 338 46 9 2855 3176 610717115 610717451 3.680000e-65 259.0
25 TraesCS5B01G501000 chr7D 85.714 63 7 2 2941 3002 572412912 572412851 8.600000e-07 65.8
26 TraesCS5B01G501000 chr7D 85.714 63 7 2 2941 3002 572440885 572440946 8.600000e-07 65.8
27 TraesCS5B01G501000 chr7D 100.000 29 0 0 2857 2885 156194975 156195003 2.000000e-03 54.7
28 TraesCS5B01G501000 chr7D 100.000 28 0 0 1 28 156195645 156195618 7.000000e-03 52.8
29 TraesCS5B01G501000 chr7A 90.486 473 29 6 16 474 712344092 712344562 8.810000e-171 610.0
30 TraesCS5B01G501000 chr7A 76.159 151 29 7 2857 3003 671526017 671526164 5.140000e-09 73.1
31 TraesCS5B01G501000 chr3B 91.705 434 30 3 16 445 20813785 20813354 6.860000e-167 597.0
32 TraesCS5B01G501000 chr3B 92.611 203 10 1 3513 3710 732874390 732874592 1.690000e-73 287.0
33 TraesCS5B01G501000 chr3B 90.361 83 5 2 2329 2411 10172255 10172334 5.070000e-19 106.0
34 TraesCS5B01G501000 chr4B 89.911 337 20 4 2856 3178 9668673 9668337 4.430000e-114 422.0
35 TraesCS5B01G501000 chr4B 95.980 199 7 1 3513 3711 9668128 9667931 4.620000e-84 322.0
36 TraesCS5B01G501000 chr4B 88.028 142 5 7 2938 3067 9631842 9631983 1.380000e-34 158.0
37 TraesCS5B01G501000 chr4B 87.324 142 6 7 2938 3067 9586869 9587010 6.420000e-33 152.0
38 TraesCS5B01G501000 chr4B 87.324 142 6 7 2938 3067 9622209 9622350 6.420000e-33 152.0
39 TraesCS5B01G501000 chr1B 86.167 347 23 14 2852 3175 540285667 540286011 5.900000e-93 351.0
40 TraesCS5B01G501000 chr1B 86.095 338 30 9 2856 3178 549906028 549906363 7.630000e-92 348.0
41 TraesCS5B01G501000 chr1B 97.487 199 5 0 3513 3711 549906573 549906771 1.280000e-89 340.0
42 TraesCS5B01G501000 chr1B 84.661 339 34 11 2857 3178 612427953 612427616 4.620000e-84 322.0
43 TraesCS5B01G501000 chr1B 95.477 199 8 1 3513 3711 540286223 540286420 2.150000e-82 316.0
44 TraesCS5B01G501000 chr1B 92.647 204 10 1 3513 3711 612427406 612427203 4.690000e-74 289.0
45 TraesCS5B01G501000 chr1B 86.957 230 16 7 2857 3072 549924996 549924767 2.860000e-61 246.0
46 TraesCS5B01G501000 chr2B 86.095 338 24 11 2857 3178 546623505 546623175 3.550000e-90 342.0
47 TraesCS5B01G501000 chr2B 96.985 199 6 0 3513 3711 546622961 546622763 5.940000e-88 335.0
48 TraesCS5B01G501000 chr2B 89.139 267 17 6 2924 3178 465660778 465661044 4.620000e-84 322.0
49 TraesCS5B01G501000 chr2B 92.965 199 9 1 3513 3706 722903000 722903198 6.070000e-73 285.0
50 TraesCS5B01G501000 chr6A 79.870 154 25 6 2854 3003 608222925 608223076 1.410000e-19 108.0
51 TraesCS5B01G501000 chr6A 96.875 32 1 0 509 540 611911282 611911251 2.000000e-03 54.7
52 TraesCS5B01G501000 chr6A 100.000 28 0 0 582 609 455054828 455054855 7.000000e-03 52.8
53 TraesCS5B01G501000 chr2A 75.163 153 29 9 2856 3003 674195052 674194904 3.090000e-06 63.9
54 TraesCS5B01G501000 chr2A 100.000 30 0 0 511 540 16355474 16355445 5.180000e-04 56.5
55 TraesCS5B01G501000 chr2A 100.000 29 0 0 511 539 674194932 674194904 2.000000e-03 54.7
56 TraesCS5B01G501000 chr6D 100.000 28 0 0 1 28 80591906 80591933 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G501000 chr5B 668199453 668203163 3710 True 3118.5 5869 100.0000 1 3711 2 chr5B.!!$R3 3710
1 TraesCS5B01G501000 chr5D 529359154 529361219 2065 True 2981.0 2981 92.7630 626 2705 1 chr5D.!!$R4 2079
2 TraesCS5B01G501000 chr5A 657496992 657498868 1876 True 2499.0 2499 90.5670 771 2697 1 chr5A.!!$R1 1926
3 TraesCS5B01G501000 chr5A 644102422 644102979 557 False 614.0 614 86.9880 1 545 1 chr5A.!!$F1 544
4 TraesCS5B01G501000 chr2D 570125396 570125938 542 False 708.0 708 90.6420 16 545 1 chr2D.!!$F1 529
5 TraesCS5B01G501000 chr4A 620744868 620745423 555 False 695.0 695 89.6060 1 544 1 chr4A.!!$F1 543
6 TraesCS5B01G501000 chr6B 134390632 134391256 624 False 675.0 675 86.7090 1 609 1 chr6B.!!$F1 608
7 TraesCS5B01G501000 chr6B 704393670 704394211 541 True 658.0 658 88.9710 16 545 1 chr6B.!!$R2 529
8 TraesCS5B01G501000 chr4D 8878105 8878694 589 False 358.4 664 94.5770 1 545 2 chr4D.!!$F1 544
9 TraesCS5B01G501000 chr7D 156195056 156195645 589 True 346.4 640 94.2095 1 544 2 chr7D.!!$R3 543
10 TraesCS5B01G501000 chr4B 9667931 9668673 742 True 372.0 422 92.9455 2856 3711 2 chr4B.!!$R1 855
11 TraesCS5B01G501000 chr1B 549906028 549906771 743 False 344.0 348 91.7910 2856 3711 2 chr1B.!!$F2 855
12 TraesCS5B01G501000 chr1B 540285667 540286420 753 False 333.5 351 90.8220 2852 3711 2 chr1B.!!$F1 859
13 TraesCS5B01G501000 chr1B 612427203 612427953 750 True 305.5 322 88.6540 2857 3711 2 chr1B.!!$R2 854
14 TraesCS5B01G501000 chr2B 546622763 546623505 742 True 338.5 342 91.5400 2857 3711 2 chr2B.!!$R1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
543 594 0.037160 GTCCCTGGCGGTAGGAAAAA 59.963 55.0 2.18 0.0 40.42 1.94 F
545 596 0.037734 CCCTGGCGGTAGGAAAAAGT 59.962 55.0 2.18 0.0 40.42 2.66 F
1754 1829 0.185901 AAGAAGCACCACCACCACAT 59.814 50.0 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2593 1.153429 GCCACGGTGGGTATCACTC 60.153 63.158 27.41 5.4 45.38 3.51 R
2583 2678 2.047274 TAGCTGCACCAACGAGCC 60.047 61.111 1.02 0.0 32.86 4.70 R
2767 2867 0.032952 TCGCGCAAGGAAACTGTACT 59.967 50.000 8.75 0.0 42.68 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 64 7.948034 ATAGGCTCTATCATAGTCAACTACC 57.052 40.000 0.00 0.00 0.00 3.18
135 169 2.903678 CCAAATAATGCGTCGAATCGG 58.096 47.619 1.76 0.00 0.00 4.18
268 303 0.104777 TGGATGGGATGAGAGAGGGG 60.105 60.000 0.00 0.00 0.00 4.79
322 361 1.856873 AAGATGGGGGCTGGGTTCA 60.857 57.895 0.00 0.00 0.00 3.18
440 480 3.528370 CCTGGCGGTAGGGTCGAG 61.528 72.222 0.00 0.00 34.06 4.04
477 528 0.249398 GCTGACGTGGATAAGTGGGT 59.751 55.000 0.00 0.00 0.00 4.51
478 529 1.338769 GCTGACGTGGATAAGTGGGTT 60.339 52.381 0.00 0.00 0.00 4.11
479 530 2.346803 CTGACGTGGATAAGTGGGTTG 58.653 52.381 0.00 0.00 0.00 3.77
480 531 1.695242 TGACGTGGATAAGTGGGTTGT 59.305 47.619 0.00 0.00 0.00 3.32
481 532 2.289195 TGACGTGGATAAGTGGGTTGTC 60.289 50.000 0.00 0.00 0.00 3.18
482 533 1.337447 ACGTGGATAAGTGGGTTGTCG 60.337 52.381 0.00 0.00 0.00 4.35
483 534 1.337447 CGTGGATAAGTGGGTTGTCGT 60.337 52.381 0.00 0.00 0.00 4.34
484 535 2.344025 GTGGATAAGTGGGTTGTCGTC 58.656 52.381 0.00 0.00 0.00 4.20
485 536 1.067425 TGGATAAGTGGGTTGTCGTCG 60.067 52.381 0.00 0.00 0.00 5.12
486 537 1.636988 GATAAGTGGGTTGTCGTCGG 58.363 55.000 0.00 0.00 0.00 4.79
487 538 0.971386 ATAAGTGGGTTGTCGTCGGT 59.029 50.000 0.00 0.00 0.00 4.69
488 539 0.752054 TAAGTGGGTTGTCGTCGGTT 59.248 50.000 0.00 0.00 0.00 4.44
489 540 0.531311 AAGTGGGTTGTCGTCGGTTC 60.531 55.000 0.00 0.00 0.00 3.62
490 541 1.957695 GTGGGTTGTCGTCGGTTCC 60.958 63.158 0.00 0.00 0.00 3.62
491 542 2.357881 GGGTTGTCGTCGGTTCCC 60.358 66.667 0.00 0.00 0.00 3.97
492 543 2.422591 GGTTGTCGTCGGTTCCCA 59.577 61.111 0.00 0.00 0.00 4.37
493 544 1.957695 GGTTGTCGTCGGTTCCCAC 60.958 63.158 0.00 0.00 0.00 4.61
494 545 2.027897 TTGTCGTCGGTTCCCACG 59.972 61.111 2.79 2.79 37.36 4.94
495 546 3.502990 TTGTCGTCGGTTCCCACGG 62.503 63.158 8.86 0.00 36.64 4.94
501 552 4.807039 CGGTTCCCACGGCGGTAG 62.807 72.222 13.24 0.00 0.00 3.18
513 564 1.429423 GCGGTAGCATGTTCAAGCC 59.571 57.895 0.00 0.00 44.35 4.35
514 565 1.026718 GCGGTAGCATGTTCAAGCCT 61.027 55.000 0.00 0.00 44.35 4.58
515 566 1.742411 GCGGTAGCATGTTCAAGCCTA 60.742 52.381 0.00 0.00 44.35 3.93
516 567 1.933853 CGGTAGCATGTTCAAGCCTAC 59.066 52.381 0.00 0.00 0.00 3.18
517 568 2.289565 GGTAGCATGTTCAAGCCTACC 58.710 52.381 7.43 7.43 31.99 3.18
518 569 1.933853 GTAGCATGTTCAAGCCTACCG 59.066 52.381 0.00 0.00 0.00 4.02
519 570 1.026718 AGCATGTTCAAGCCTACCGC 61.027 55.000 0.00 0.00 37.98 5.68
520 571 1.993369 GCATGTTCAAGCCTACCGCC 61.993 60.000 0.00 0.00 38.78 6.13
521 572 0.676466 CATGTTCAAGCCTACCGCCA 60.676 55.000 0.00 0.00 38.78 5.69
522 573 0.255890 ATGTTCAAGCCTACCGCCAT 59.744 50.000 0.00 0.00 38.78 4.40
523 574 0.676466 TGTTCAAGCCTACCGCCATG 60.676 55.000 0.00 0.00 38.78 3.66
524 575 1.077787 TTCAAGCCTACCGCCATGG 60.078 57.895 7.63 7.63 46.41 3.66
536 587 3.087253 CCATGGTCCCTGGCGGTA 61.087 66.667 2.57 0.00 0.00 4.02
537 588 2.505982 CATGGTCCCTGGCGGTAG 59.494 66.667 0.00 0.00 0.00 3.18
538 589 2.768344 ATGGTCCCTGGCGGTAGG 60.768 66.667 0.00 0.00 37.59 3.18
539 590 3.326385 ATGGTCCCTGGCGGTAGGA 62.326 63.158 2.18 0.00 40.42 2.94
540 591 2.686106 GGTCCCTGGCGGTAGGAA 60.686 66.667 2.18 0.00 40.42 3.36
541 592 2.295602 GGTCCCTGGCGGTAGGAAA 61.296 63.158 2.18 0.00 40.42 3.13
542 593 1.681076 GTCCCTGGCGGTAGGAAAA 59.319 57.895 2.18 0.00 40.42 2.29
543 594 0.037160 GTCCCTGGCGGTAGGAAAAA 59.963 55.000 2.18 0.00 40.42 1.94
544 595 0.326927 TCCCTGGCGGTAGGAAAAAG 59.673 55.000 2.18 0.00 40.42 2.27
545 596 0.037734 CCCTGGCGGTAGGAAAAAGT 59.962 55.000 2.18 0.00 40.42 2.66
546 597 1.546998 CCCTGGCGGTAGGAAAAAGTT 60.547 52.381 2.18 0.00 40.42 2.66
547 598 2.235891 CCTGGCGGTAGGAAAAAGTTT 58.764 47.619 0.00 0.00 40.42 2.66
548 599 2.626266 CCTGGCGGTAGGAAAAAGTTTT 59.374 45.455 0.00 0.00 40.42 2.43
549 600 3.552068 CCTGGCGGTAGGAAAAAGTTTTG 60.552 47.826 0.61 0.00 40.42 2.44
550 601 3.025262 TGGCGGTAGGAAAAAGTTTTGT 58.975 40.909 0.61 0.00 0.00 2.83
551 602 4.205587 TGGCGGTAGGAAAAAGTTTTGTA 58.794 39.130 0.61 0.00 0.00 2.41
552 603 4.643784 TGGCGGTAGGAAAAAGTTTTGTAA 59.356 37.500 0.61 0.00 0.00 2.41
553 604 4.977963 GGCGGTAGGAAAAAGTTTTGTAAC 59.022 41.667 0.61 0.00 34.36 2.50
554 605 5.221106 GGCGGTAGGAAAAAGTTTTGTAACT 60.221 40.000 0.61 1.28 46.44 2.24
555 606 6.017192 GGCGGTAGGAAAAAGTTTTGTAACTA 60.017 38.462 0.61 0.39 43.74 2.24
556 607 7.073883 GCGGTAGGAAAAAGTTTTGTAACTAG 58.926 38.462 0.61 0.00 43.74 2.57
557 608 7.578852 CGGTAGGAAAAAGTTTTGTAACTAGG 58.421 38.462 0.61 0.00 43.74 3.02
558 609 7.308169 CGGTAGGAAAAAGTTTTGTAACTAGGG 60.308 40.741 0.61 0.00 43.74 3.53
559 610 7.503566 GGTAGGAAAAAGTTTTGTAACTAGGGT 59.496 37.037 0.61 0.00 43.74 4.34
560 611 7.578310 AGGAAAAAGTTTTGTAACTAGGGTC 57.422 36.000 0.61 0.00 43.74 4.46
561 612 7.120716 AGGAAAAAGTTTTGTAACTAGGGTCA 58.879 34.615 0.61 0.00 43.74 4.02
562 613 7.284716 AGGAAAAAGTTTTGTAACTAGGGTCAG 59.715 37.037 0.61 0.00 43.74 3.51
563 614 7.283807 GGAAAAAGTTTTGTAACTAGGGTCAGA 59.716 37.037 0.61 0.00 43.74 3.27
564 615 8.762481 AAAAAGTTTTGTAACTAGGGTCAGAT 57.238 30.769 0.61 0.00 43.74 2.90
565 616 7.981102 AAAGTTTTGTAACTAGGGTCAGATC 57.019 36.000 0.00 0.00 43.74 2.75
566 617 6.681729 AGTTTTGTAACTAGGGTCAGATCA 57.318 37.500 0.00 0.00 42.73 2.92
567 618 7.259088 AGTTTTGTAACTAGGGTCAGATCAT 57.741 36.000 0.00 0.00 42.73 2.45
568 619 7.106239 AGTTTTGTAACTAGGGTCAGATCATG 58.894 38.462 0.00 0.00 42.73 3.07
569 620 4.672587 TGTAACTAGGGTCAGATCATGC 57.327 45.455 0.00 0.00 0.00 4.06
570 621 4.290093 TGTAACTAGGGTCAGATCATGCT 58.710 43.478 0.00 0.00 0.00 3.79
571 622 3.834489 AACTAGGGTCAGATCATGCTG 57.166 47.619 0.00 0.00 37.24 4.41
572 623 3.037851 ACTAGGGTCAGATCATGCTGA 57.962 47.619 0.00 0.00 42.31 4.26
573 624 3.378512 ACTAGGGTCAGATCATGCTGAA 58.621 45.455 4.79 0.00 45.69 3.02
574 625 3.387374 ACTAGGGTCAGATCATGCTGAAG 59.613 47.826 4.79 2.50 45.69 3.02
575 626 2.194859 AGGGTCAGATCATGCTGAAGT 58.805 47.619 4.79 0.00 45.69 3.01
576 627 2.575279 AGGGTCAGATCATGCTGAAGTT 59.425 45.455 4.79 0.00 45.69 2.66
577 628 3.776969 AGGGTCAGATCATGCTGAAGTTA 59.223 43.478 4.79 0.00 45.69 2.24
578 629 4.125703 GGGTCAGATCATGCTGAAGTTAG 58.874 47.826 4.79 0.00 45.69 2.34
579 630 3.559242 GGTCAGATCATGCTGAAGTTAGC 59.441 47.826 4.79 0.00 45.69 3.09
580 631 4.440880 GTCAGATCATGCTGAAGTTAGCT 58.559 43.478 4.79 0.00 45.69 3.32
581 632 5.452496 GGTCAGATCATGCTGAAGTTAGCTA 60.452 44.000 4.79 0.00 45.69 3.32
582 633 6.045318 GTCAGATCATGCTGAAGTTAGCTAA 58.955 40.000 0.86 0.86 45.69 3.09
583 634 6.536582 GTCAGATCATGCTGAAGTTAGCTAAA 59.463 38.462 7.99 0.00 45.69 1.85
584 635 7.065085 GTCAGATCATGCTGAAGTTAGCTAAAA 59.935 37.037 7.99 0.00 45.69 1.52
585 636 7.279536 TCAGATCATGCTGAAGTTAGCTAAAAG 59.720 37.037 7.99 5.20 41.65 2.27
586 637 6.541641 AGATCATGCTGAAGTTAGCTAAAAGG 59.458 38.462 7.99 0.00 44.01 3.11
587 638 4.943705 TCATGCTGAAGTTAGCTAAAAGGG 59.056 41.667 7.99 0.00 44.01 3.95
588 639 4.367039 TGCTGAAGTTAGCTAAAAGGGT 57.633 40.909 7.99 0.00 44.01 4.34
589 640 4.324267 TGCTGAAGTTAGCTAAAAGGGTC 58.676 43.478 7.99 2.41 44.01 4.46
590 641 4.202419 TGCTGAAGTTAGCTAAAAGGGTCA 60.202 41.667 7.99 6.68 44.01 4.02
591 642 4.760204 GCTGAAGTTAGCTAAAAGGGTCAA 59.240 41.667 7.99 0.00 40.52 3.18
592 643 5.240844 GCTGAAGTTAGCTAAAAGGGTCAAA 59.759 40.000 7.99 0.00 40.52 2.69
593 644 6.628919 TGAAGTTAGCTAAAAGGGTCAAAC 57.371 37.500 7.99 0.00 0.00 2.93
594 645 5.533528 TGAAGTTAGCTAAAAGGGTCAAACC 59.466 40.000 7.99 0.00 37.60 3.27
595 646 5.056553 AGTTAGCTAAAAGGGTCAAACCA 57.943 39.130 7.99 0.00 41.02 3.67
596 647 5.641155 AGTTAGCTAAAAGGGTCAAACCAT 58.359 37.500 7.99 0.00 41.02 3.55
597 648 5.476945 AGTTAGCTAAAAGGGTCAAACCATG 59.523 40.000 7.99 0.00 41.02 3.66
598 649 4.112634 AGCTAAAAGGGTCAAACCATGA 57.887 40.909 0.00 0.00 41.02 3.07
599 650 4.479158 AGCTAAAAGGGTCAAACCATGAA 58.521 39.130 0.00 0.00 41.02 2.57
600 651 4.898861 AGCTAAAAGGGTCAAACCATGAAA 59.101 37.500 0.00 0.00 41.02 2.69
601 652 5.543790 AGCTAAAAGGGTCAAACCATGAAAT 59.456 36.000 0.00 0.00 41.02 2.17
602 653 6.043127 AGCTAAAAGGGTCAAACCATGAAATT 59.957 34.615 0.00 0.00 41.02 1.82
603 654 6.710295 GCTAAAAGGGTCAAACCATGAAATTT 59.290 34.615 0.00 0.00 41.02 1.82
604 655 7.228507 GCTAAAAGGGTCAAACCATGAAATTTT 59.771 33.333 0.00 0.00 41.02 1.82
605 656 6.940831 AAAGGGTCAAACCATGAAATTTTG 57.059 33.333 0.00 0.00 41.02 2.44
606 657 4.388485 AGGGTCAAACCATGAAATTTTGC 58.612 39.130 0.00 0.00 41.02 3.68
607 658 3.501828 GGGTCAAACCATGAAATTTTGCC 59.498 43.478 0.00 4.63 41.02 4.52
608 659 4.388485 GGTCAAACCATGAAATTTTGCCT 58.612 39.130 0.00 0.00 40.50 4.75
609 660 4.213906 GGTCAAACCATGAAATTTTGCCTG 59.786 41.667 0.00 0.00 40.50 4.85
610 661 5.055812 GTCAAACCATGAAATTTTGCCTGA 58.944 37.500 0.00 0.00 40.50 3.86
611 662 5.702209 GTCAAACCATGAAATTTTGCCTGAT 59.298 36.000 0.00 0.00 40.50 2.90
612 663 5.701750 TCAAACCATGAAATTTTGCCTGATG 59.298 36.000 0.00 0.00 34.30 3.07
613 664 4.895668 ACCATGAAATTTTGCCTGATGT 57.104 36.364 0.00 0.00 0.00 3.06
614 665 5.231702 ACCATGAAATTTTGCCTGATGTT 57.768 34.783 0.00 0.00 0.00 2.71
615 666 4.998672 ACCATGAAATTTTGCCTGATGTTG 59.001 37.500 0.00 0.00 0.00 3.33
616 667 5.221682 ACCATGAAATTTTGCCTGATGTTGA 60.222 36.000 0.00 0.00 0.00 3.18
617 668 5.878116 CCATGAAATTTTGCCTGATGTTGAT 59.122 36.000 0.00 0.00 0.00 2.57
618 669 6.373216 CCATGAAATTTTGCCTGATGTTGATT 59.627 34.615 0.00 0.00 0.00 2.57
619 670 6.788684 TGAAATTTTGCCTGATGTTGATTG 57.211 33.333 0.00 0.00 0.00 2.67
620 671 5.179742 TGAAATTTTGCCTGATGTTGATTGC 59.820 36.000 0.00 0.00 0.00 3.56
621 672 4.546829 ATTTTGCCTGATGTTGATTGCT 57.453 36.364 0.00 0.00 0.00 3.91
622 673 3.581024 TTTGCCTGATGTTGATTGCTC 57.419 42.857 0.00 0.00 0.00 4.26
623 674 1.089112 TGCCTGATGTTGATTGCTCG 58.911 50.000 0.00 0.00 0.00 5.03
624 675 0.379669 GCCTGATGTTGATTGCTCGG 59.620 55.000 0.00 0.00 0.00 4.63
625 676 1.019673 CCTGATGTTGATTGCTCGGG 58.980 55.000 0.00 0.00 0.00 5.14
626 677 0.379669 CTGATGTTGATTGCTCGGGC 59.620 55.000 0.00 0.00 39.26 6.13
627 678 1.353103 GATGTTGATTGCTCGGGCG 59.647 57.895 1.14 0.00 42.25 6.13
628 679 1.078497 ATGTTGATTGCTCGGGCGA 60.078 52.632 0.00 0.00 42.25 5.54
629 680 1.091771 ATGTTGATTGCTCGGGCGAG 61.092 55.000 2.33 0.00 44.56 5.03
630 681 1.741770 GTTGATTGCTCGGGCGAGT 60.742 57.895 2.33 0.00 43.70 4.18
631 682 1.741401 TTGATTGCTCGGGCGAGTG 60.741 57.895 2.33 0.00 43.70 3.51
632 683 2.166130 TTGATTGCTCGGGCGAGTGA 62.166 55.000 2.33 0.00 43.70 3.41
633 684 1.880340 GATTGCTCGGGCGAGTGAG 60.880 63.158 2.33 0.00 43.70 3.51
637 688 3.197614 CTCGGGCGAGTGAGCTTA 58.802 61.111 0.00 0.00 37.47 3.09
638 689 1.064946 CTCGGGCGAGTGAGCTTAG 59.935 63.158 0.00 0.00 37.47 2.18
639 690 2.583593 CGGGCGAGTGAGCTTAGC 60.584 66.667 0.00 0.00 37.29 3.09
640 691 2.583593 GGGCGAGTGAGCTTAGCG 60.584 66.667 0.00 0.00 37.29 4.26
654 705 3.927142 AGCTTAGCGTAATCACACACTTC 59.073 43.478 0.00 0.00 0.00 3.01
656 707 2.831685 AGCGTAATCACACACTTCCA 57.168 45.000 0.00 0.00 0.00 3.53
664 715 3.358111 TCACACACTTCCAAAGGACAA 57.642 42.857 0.00 0.00 0.00 3.18
673 724 5.068987 CACTTCCAAAGGACAATCCAAAAGA 59.931 40.000 0.00 0.00 39.61 2.52
680 731 3.966665 AGGACAATCCAAAAGAAAAGCCA 59.033 39.130 0.00 0.00 39.61 4.75
733 784 3.431486 GCCAGGACTCAAGTGGATTAGAG 60.431 52.174 0.00 0.00 32.60 2.43
735 786 4.099266 CCAGGACTCAAGTGGATTAGAGAG 59.901 50.000 0.00 0.00 32.60 3.20
743 794 3.370104 AGTGGATTAGAGAGGACTGTGG 58.630 50.000 0.00 0.00 0.00 4.17
777 828 2.227388 CAGCCAATAATCGGATGGAAGC 59.773 50.000 0.00 0.00 36.26 3.86
878 929 4.146075 GCTCGGCTCAGCTCAGCT 62.146 66.667 10.24 0.00 40.77 4.24
879 930 2.104729 CTCGGCTCAGCTCAGCTC 59.895 66.667 10.24 0.00 36.40 4.09
880 931 2.677875 TCGGCTCAGCTCAGCTCA 60.678 61.111 10.24 0.00 36.40 4.26
1008 1068 1.118965 TCAGAGTCCAACCCAGCGAA 61.119 55.000 0.00 0.00 0.00 4.70
1009 1069 0.671781 CAGAGTCCAACCCAGCGAAG 60.672 60.000 0.00 0.00 0.00 3.79
1128 1188 3.878519 CTCGACGGCTCCGACCTC 61.879 72.222 15.95 1.36 42.83 3.85
1291 1360 4.346049 CGGAGCAGGAGAAGAGGA 57.654 61.111 0.00 0.00 0.00 3.71
1292 1361 2.819477 CGGAGCAGGAGAAGAGGAT 58.181 57.895 0.00 0.00 0.00 3.24
1294 1363 0.758123 GGAGCAGGAGAAGAGGATGG 59.242 60.000 0.00 0.00 0.00 3.51
1692 1767 2.164026 GCTCAAGGAGAAGCTCGCG 61.164 63.158 0.00 0.00 0.00 5.87
1749 1824 0.890996 CCTCCAAGAAGCACCACCAC 60.891 60.000 0.00 0.00 0.00 4.16
1754 1829 0.185901 AAGAAGCACCACCACCACAT 59.814 50.000 0.00 0.00 0.00 3.21
1818 1893 4.505217 CTGTTCGTCGCATGCGCC 62.505 66.667 34.45 24.13 39.59 6.53
2046 2121 2.617538 TCCTCCCTCCTCGACCCT 60.618 66.667 0.00 0.00 0.00 4.34
2049 2124 3.965026 CTCCCTCCTCGACCCTGCA 62.965 68.421 0.00 0.00 0.00 4.41
2052 2127 4.154347 CTCCTCGACCCTGCAGCC 62.154 72.222 8.66 0.00 0.00 4.85
2175 2250 2.357517 AAGTTCGCGTCCCTGCTG 60.358 61.111 5.77 0.00 0.00 4.41
2226 2301 2.097038 CGAGGAGCACAAGAAGGCG 61.097 63.158 0.00 0.00 34.54 5.52
2583 2678 2.202851 CACCTGCTAGCTGGAGCG 60.203 66.667 38.37 24.50 45.99 5.03
2625 2720 1.246056 GCTGCATTTGACTCCCTGCA 61.246 55.000 0.00 0.00 41.98 4.41
2652 2747 2.810164 AGTTCTCCTCTCCACTGTACC 58.190 52.381 0.00 0.00 0.00 3.34
2677 2777 4.752604 GGTCCTTGCTAAATCTAAGCTAGC 59.247 45.833 6.62 6.62 40.20 3.42
2697 2797 6.370166 GCTAGCTGCTTCTTCTCTAAAGAAAA 59.630 38.462 7.79 0.00 38.67 2.29
2699 2799 7.376435 AGCTGCTTCTTCTCTAAAGAAAATC 57.624 36.000 0.00 0.00 40.95 2.17
2700 2800 7.167535 AGCTGCTTCTTCTCTAAAGAAAATCT 58.832 34.615 0.00 0.00 40.95 2.40
2701 2801 7.334171 AGCTGCTTCTTCTCTAAAGAAAATCTC 59.666 37.037 0.00 0.00 40.95 2.75
2702 2802 7.118971 GCTGCTTCTTCTCTAAAGAAAATCTCA 59.881 37.037 0.00 0.00 40.95 3.27
2703 2803 9.165035 CTGCTTCTTCTCTAAAGAAAATCTCAT 57.835 33.333 2.25 0.00 40.95 2.90
2704 2804 8.944029 TGCTTCTTCTCTAAAGAAAATCTCATG 58.056 33.333 2.25 0.00 40.95 3.07
2705 2805 8.945057 GCTTCTTCTCTAAAGAAAATCTCATGT 58.055 33.333 2.25 0.00 40.95 3.21
2707 2807 9.784531 TTCTTCTCTAAAGAAAATCTCATGTGT 57.215 29.630 0.00 0.00 40.95 3.72
2708 2808 9.784531 TCTTCTCTAAAGAAAATCTCATGTGTT 57.215 29.630 0.00 0.00 40.95 3.32
2709 2809 9.823098 CTTCTCTAAAGAAAATCTCATGTGTTG 57.177 33.333 0.00 0.00 40.95 3.33
2710 2810 8.908786 TCTCTAAAGAAAATCTCATGTGTTGT 57.091 30.769 0.00 0.00 0.00 3.32
2711 2811 9.342308 TCTCTAAAGAAAATCTCATGTGTTGTT 57.658 29.630 0.00 0.00 0.00 2.83
2712 2812 9.604626 CTCTAAAGAAAATCTCATGTGTTGTTC 57.395 33.333 0.00 0.00 0.00 3.18
2713 2813 9.119418 TCTAAAGAAAATCTCATGTGTTGTTCA 57.881 29.630 10.08 0.00 0.00 3.18
2714 2814 7.992180 AAAGAAAATCTCATGTGTTGTTCAC 57.008 32.000 10.08 0.00 46.31 3.18
2715 2815 6.076981 AGAAAATCTCATGTGTTGTTCACC 57.923 37.500 10.08 0.00 45.61 4.02
2716 2816 4.488126 AAATCTCATGTGTTGTTCACCG 57.512 40.909 0.00 0.00 45.61 4.94
2717 2817 2.900716 TCTCATGTGTTGTTCACCGA 57.099 45.000 0.00 0.00 45.61 4.69
2718 2818 3.186702 TCTCATGTGTTGTTCACCGAA 57.813 42.857 0.00 0.00 45.61 4.30
2719 2819 3.130633 TCTCATGTGTTGTTCACCGAAG 58.869 45.455 0.00 0.00 45.61 3.79
2720 2820 2.872245 CTCATGTGTTGTTCACCGAAGT 59.128 45.455 0.00 0.00 45.61 3.01
2721 2821 2.611751 TCATGTGTTGTTCACCGAAGTG 59.388 45.455 0.00 0.00 45.61 3.16
2722 2822 0.730265 TGTGTTGTTCACCGAAGTGC 59.270 50.000 0.00 0.00 45.61 4.40
2723 2823 0.028902 GTGTTGTTCACCGAAGTGCC 59.971 55.000 0.00 0.00 44.16 5.01
2724 2824 1.098712 TGTTGTTCACCGAAGTGCCC 61.099 55.000 0.00 0.00 44.16 5.36
2725 2825 1.527380 TTGTTCACCGAAGTGCCCC 60.527 57.895 0.00 0.00 44.16 5.80
2726 2826 2.112297 GTTCACCGAAGTGCCCCA 59.888 61.111 0.00 0.00 44.16 4.96
2727 2827 1.527380 GTTCACCGAAGTGCCCCAA 60.527 57.895 0.00 0.00 44.16 4.12
2728 2828 1.527380 TTCACCGAAGTGCCCCAAC 60.527 57.895 0.00 0.00 44.16 3.77
2729 2829 1.990160 TTCACCGAAGTGCCCCAACT 61.990 55.000 0.00 0.00 44.16 3.16
2730 2830 1.122632 TCACCGAAGTGCCCCAACTA 61.123 55.000 0.00 0.00 44.16 2.24
2731 2831 0.250553 CACCGAAGTGCCCCAACTAA 60.251 55.000 0.00 0.00 37.14 2.24
2732 2832 0.250597 ACCGAAGTGCCCCAACTAAC 60.251 55.000 0.00 0.00 0.00 2.34
2733 2833 0.250553 CCGAAGTGCCCCAACTAACA 60.251 55.000 0.00 0.00 0.00 2.41
2734 2834 1.156736 CGAAGTGCCCCAACTAACAG 58.843 55.000 0.00 0.00 0.00 3.16
2735 2835 1.542547 CGAAGTGCCCCAACTAACAGT 60.543 52.381 0.00 0.00 0.00 3.55
2736 2836 2.289195 CGAAGTGCCCCAACTAACAGTA 60.289 50.000 0.00 0.00 0.00 2.74
2737 2837 2.853235 AGTGCCCCAACTAACAGTAC 57.147 50.000 0.00 0.00 0.00 2.73
2738 2838 2.051692 AGTGCCCCAACTAACAGTACA 58.948 47.619 0.00 0.00 0.00 2.90
2739 2839 2.440253 AGTGCCCCAACTAACAGTACAA 59.560 45.455 0.00 0.00 0.00 2.41
2740 2840 3.073946 AGTGCCCCAACTAACAGTACAAT 59.926 43.478 0.00 0.00 0.00 2.71
2741 2841 3.824443 GTGCCCCAACTAACAGTACAATT 59.176 43.478 0.00 0.00 0.00 2.32
2742 2842 4.279922 GTGCCCCAACTAACAGTACAATTT 59.720 41.667 0.00 0.00 0.00 1.82
2743 2843 4.896482 TGCCCCAACTAACAGTACAATTTT 59.104 37.500 0.00 0.00 0.00 1.82
2744 2844 5.364157 TGCCCCAACTAACAGTACAATTTTT 59.636 36.000 0.00 0.00 0.00 1.94
2745 2845 5.924254 GCCCCAACTAACAGTACAATTTTTC 59.076 40.000 0.00 0.00 0.00 2.29
2746 2846 6.452242 CCCCAACTAACAGTACAATTTTTCC 58.548 40.000 0.00 0.00 0.00 3.13
2747 2847 6.266786 CCCCAACTAACAGTACAATTTTTCCT 59.733 38.462 0.00 0.00 0.00 3.36
2748 2848 7.145323 CCCAACTAACAGTACAATTTTTCCTG 58.855 38.462 0.00 0.00 0.00 3.86
2749 2849 7.145323 CCAACTAACAGTACAATTTTTCCTGG 58.855 38.462 0.00 0.00 0.00 4.45
2750 2850 6.327279 ACTAACAGTACAATTTTTCCTGGC 57.673 37.500 0.00 0.00 0.00 4.85
2751 2851 6.068670 ACTAACAGTACAATTTTTCCTGGCT 58.931 36.000 0.00 0.00 0.00 4.75
2752 2852 5.453567 AACAGTACAATTTTTCCTGGCTC 57.546 39.130 0.00 0.00 0.00 4.70
2753 2853 4.469657 ACAGTACAATTTTTCCTGGCTCA 58.530 39.130 0.00 0.00 0.00 4.26
2754 2854 5.079643 ACAGTACAATTTTTCCTGGCTCAT 58.920 37.500 0.00 0.00 0.00 2.90
2755 2855 5.183904 ACAGTACAATTTTTCCTGGCTCATC 59.816 40.000 0.00 0.00 0.00 2.92
2756 2856 3.855689 ACAATTTTTCCTGGCTCATCG 57.144 42.857 0.00 0.00 0.00 3.84
2757 2857 3.157087 ACAATTTTTCCTGGCTCATCGT 58.843 40.909 0.00 0.00 0.00 3.73
2758 2858 3.057315 ACAATTTTTCCTGGCTCATCGTG 60.057 43.478 0.00 0.00 0.00 4.35
2759 2859 2.270352 TTTTTCCTGGCTCATCGTGT 57.730 45.000 0.00 0.00 0.00 4.49
2760 2860 3.410631 TTTTTCCTGGCTCATCGTGTA 57.589 42.857 0.00 0.00 0.00 2.90
2761 2861 2.380084 TTTCCTGGCTCATCGTGTAC 57.620 50.000 0.00 0.00 0.00 2.90
2762 2862 1.557099 TTCCTGGCTCATCGTGTACT 58.443 50.000 0.00 0.00 0.00 2.73
2763 2863 0.817654 TCCTGGCTCATCGTGTACTG 59.182 55.000 0.00 0.00 0.00 2.74
2764 2864 0.817654 CCTGGCTCATCGTGTACTGA 59.182 55.000 0.00 0.00 0.00 3.41
2765 2865 1.410517 CCTGGCTCATCGTGTACTGAT 59.589 52.381 0.00 0.00 0.00 2.90
2766 2866 2.544694 CCTGGCTCATCGTGTACTGATC 60.545 54.545 0.00 0.00 0.00 2.92
2767 2867 2.099405 TGGCTCATCGTGTACTGATCA 58.901 47.619 0.00 0.00 0.00 2.92
2768 2868 2.099756 TGGCTCATCGTGTACTGATCAG 59.900 50.000 21.37 21.37 0.00 2.90
2769 2869 2.099921 GGCTCATCGTGTACTGATCAGT 59.900 50.000 30.11 30.11 45.02 3.41
2770 2870 3.315470 GGCTCATCGTGTACTGATCAGTA 59.685 47.826 27.96 27.96 42.54 2.74
2782 2882 4.319177 ACTGATCAGTACAGTTTCCTTGC 58.681 43.478 26.87 0.00 44.69 4.01
2783 2883 3.325870 TGATCAGTACAGTTTCCTTGCG 58.674 45.455 0.00 0.00 0.00 4.85
2784 2884 1.508632 TCAGTACAGTTTCCTTGCGC 58.491 50.000 0.00 0.00 0.00 6.09
2785 2885 0.163788 CAGTACAGTTTCCTTGCGCG 59.836 55.000 0.00 0.00 0.00 6.86
2786 2886 0.032952 AGTACAGTTTCCTTGCGCGA 59.967 50.000 12.10 0.00 0.00 5.87
2787 2887 0.163146 GTACAGTTTCCTTGCGCGAC 59.837 55.000 12.10 0.88 0.00 5.19
2788 2888 0.947180 TACAGTTTCCTTGCGCGACC 60.947 55.000 12.10 0.00 0.00 4.79
2789 2889 3.041940 AGTTTCCTTGCGCGACCG 61.042 61.111 12.10 0.00 37.57 4.79
2790 2890 3.343421 GTTTCCTTGCGCGACCGT 61.343 61.111 12.10 0.00 36.67 4.83
2791 2891 3.342627 TTTCCTTGCGCGACCGTG 61.343 61.111 12.10 0.00 36.67 4.94
2792 2892 4.595538 TTCCTTGCGCGACCGTGT 62.596 61.111 12.10 0.00 36.67 4.49
2793 2893 2.696409 TTTCCTTGCGCGACCGTGTA 62.696 55.000 12.10 0.00 36.67 2.90
2794 2894 2.495366 TTCCTTGCGCGACCGTGTAT 62.495 55.000 12.10 0.00 36.67 2.29
2795 2895 2.514013 CCTTGCGCGACCGTGTATC 61.514 63.158 12.10 0.00 36.67 2.24
2796 2896 1.803922 CTTGCGCGACCGTGTATCA 60.804 57.895 12.10 0.00 36.67 2.15
2797 2897 1.145759 CTTGCGCGACCGTGTATCAT 61.146 55.000 12.10 0.00 36.67 2.45
2798 2898 0.738063 TTGCGCGACCGTGTATCATT 60.738 50.000 12.10 0.00 36.67 2.57
2799 2899 1.143373 TGCGCGACCGTGTATCATTC 61.143 55.000 12.10 0.00 36.67 2.67
2800 2900 1.837450 CGCGACCGTGTATCATTCG 59.163 57.895 0.00 0.00 0.00 3.34
2802 2902 0.248743 GCGACCGTGTATCATTCGGA 60.249 55.000 9.75 0.00 46.05 4.55
2803 2903 1.474017 CGACCGTGTATCATTCGGAC 58.526 55.000 9.75 2.81 46.05 4.79
2804 2904 1.202211 CGACCGTGTATCATTCGGACA 60.202 52.381 9.75 0.00 46.05 4.02
2805 2905 2.543031 CGACCGTGTATCATTCGGACAT 60.543 50.000 9.75 0.00 46.05 3.06
2806 2906 3.454375 GACCGTGTATCATTCGGACATT 58.546 45.455 9.75 0.00 46.05 2.71
2807 2907 3.454375 ACCGTGTATCATTCGGACATTC 58.546 45.455 9.75 0.00 46.05 2.67
2808 2908 3.118920 ACCGTGTATCATTCGGACATTCA 60.119 43.478 9.75 0.00 46.05 2.57
2809 2909 3.490896 CCGTGTATCATTCGGACATTCAG 59.509 47.826 0.00 0.00 46.05 3.02
2810 2910 3.060272 CGTGTATCATTCGGACATTCAGC 60.060 47.826 0.00 0.00 0.00 4.26
2811 2911 4.122776 GTGTATCATTCGGACATTCAGCT 58.877 43.478 0.00 0.00 0.00 4.24
2812 2912 4.025396 GTGTATCATTCGGACATTCAGCTG 60.025 45.833 7.63 7.63 0.00 4.24
2813 2913 2.028420 TCATTCGGACATTCAGCTGG 57.972 50.000 15.13 0.00 0.00 4.85
2814 2914 0.379669 CATTCGGACATTCAGCTGGC 59.620 55.000 15.13 0.00 0.00 4.85
2815 2915 0.254178 ATTCGGACATTCAGCTGGCT 59.746 50.000 15.13 0.00 0.00 4.75
2816 2916 0.391661 TTCGGACATTCAGCTGGCTC 60.392 55.000 15.13 3.23 0.00 4.70
2817 2917 1.078918 CGGACATTCAGCTGGCTCA 60.079 57.895 15.13 0.00 0.00 4.26
2818 2918 0.463295 CGGACATTCAGCTGGCTCAT 60.463 55.000 15.13 0.00 0.00 2.90
2819 2919 1.307097 GGACATTCAGCTGGCTCATC 58.693 55.000 15.13 5.67 0.00 2.92
2820 2920 0.935898 GACATTCAGCTGGCTCATCG 59.064 55.000 15.13 0.00 0.00 3.84
2821 2921 0.251354 ACATTCAGCTGGCTCATCGT 59.749 50.000 15.13 0.00 0.00 3.73
2822 2922 1.339438 ACATTCAGCTGGCTCATCGTT 60.339 47.619 15.13 0.00 0.00 3.85
2823 2923 1.063616 CATTCAGCTGGCTCATCGTTG 59.936 52.381 15.13 0.00 0.00 4.10
2824 2924 0.035317 TTCAGCTGGCTCATCGTTGT 59.965 50.000 15.13 0.00 0.00 3.32
2825 2925 0.390340 TCAGCTGGCTCATCGTTGTC 60.390 55.000 15.13 0.00 0.00 3.18
2826 2926 0.390866 CAGCTGGCTCATCGTTGTCT 60.391 55.000 5.57 0.00 0.00 3.41
2827 2927 0.390866 AGCTGGCTCATCGTTGTCTG 60.391 55.000 0.00 0.00 0.00 3.51
2828 2928 1.975363 GCTGGCTCATCGTTGTCTGC 61.975 60.000 0.00 0.00 0.00 4.26
2829 2929 0.671472 CTGGCTCATCGTTGTCTGCA 60.671 55.000 0.00 0.00 0.00 4.41
2830 2930 0.036105 TGGCTCATCGTTGTCTGCAT 60.036 50.000 0.00 0.00 0.00 3.96
2831 2931 1.089920 GGCTCATCGTTGTCTGCATT 58.910 50.000 0.00 0.00 0.00 3.56
2832 2932 1.202110 GGCTCATCGTTGTCTGCATTG 60.202 52.381 0.00 0.00 0.00 2.82
2833 2933 1.733912 GCTCATCGTTGTCTGCATTGA 59.266 47.619 0.00 0.00 0.00 2.57
2834 2934 2.353889 GCTCATCGTTGTCTGCATTGAT 59.646 45.455 0.00 0.00 0.00 2.57
2835 2935 3.787805 GCTCATCGTTGTCTGCATTGATG 60.788 47.826 0.00 0.00 37.66 3.07
2848 2948 3.400505 CATTGATGCTACACTGTGCAG 57.599 47.619 7.90 5.60 42.74 4.41
2849 2949 2.549064 TTGATGCTACACTGTGCAGT 57.451 45.000 7.90 0.00 42.74 4.40
2877 2977 4.261867 GGGGCTAAATTTCGTGTTTTGACT 60.262 41.667 0.00 0.00 0.00 3.41
2915 3024 3.593328 TCAGAATCTGACCCCCTTTGAAT 59.407 43.478 9.18 0.00 35.39 2.57
2916 3025 4.044571 TCAGAATCTGACCCCCTTTGAATT 59.955 41.667 9.18 0.00 35.39 2.17
2917 3026 4.774200 CAGAATCTGACCCCCTTTGAATTT 59.226 41.667 3.77 0.00 32.44 1.82
2918 3027 5.246883 CAGAATCTGACCCCCTTTGAATTTT 59.753 40.000 3.77 0.00 32.44 1.82
3134 3257 1.005690 GGATAAGGTGGGGAGGGGT 59.994 63.158 0.00 0.00 0.00 4.95
3137 3260 0.178813 ATAAGGTGGGGAGGGGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
3151 3274 5.369993 GGAGGGGTTGTATATTTCCTCTCTT 59.630 44.000 14.94 0.00 44.40 2.85
3568 3691 8.303156 TGGTTATGTTTGTGATTTCCTTATGTG 58.697 33.333 0.00 0.00 0.00 3.21
3587 3710 3.068448 TGTGTGATGTGCTTCATTGCTTT 59.932 39.130 0.00 0.00 36.83 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 169 8.287503 TCCAATTCGTTTTAGTTAAGAAGCTTC 58.712 33.333 19.11 19.11 0.00 3.86
268 303 2.280628 CGCAAGAACATAGAGGGGAAC 58.719 52.381 0.00 0.00 43.02 3.62
486 537 3.675619 ATGCTACCGCCGTGGGAAC 62.676 63.158 2.35 0.00 44.64 3.62
487 538 3.395702 ATGCTACCGCCGTGGGAA 61.396 61.111 2.35 0.00 44.64 3.97
488 539 4.155733 CATGCTACCGCCGTGGGA 62.156 66.667 2.35 0.00 44.64 4.37
489 540 3.969250 AACATGCTACCGCCGTGGG 62.969 63.158 2.35 0.00 44.64 4.61
490 541 2.435938 AACATGCTACCGCCGTGG 60.436 61.111 0.00 0.00 46.41 4.94
491 542 1.295357 TTGAACATGCTACCGCCGTG 61.295 55.000 0.00 0.00 34.43 4.94
492 543 1.004320 TTGAACATGCTACCGCCGT 60.004 52.632 0.00 0.00 34.43 5.68
493 544 1.715585 CTTGAACATGCTACCGCCG 59.284 57.895 0.00 0.00 34.43 6.46
494 545 1.429423 GCTTGAACATGCTACCGCC 59.571 57.895 0.00 0.00 34.43 6.13
495 546 1.026718 AGGCTTGAACATGCTACCGC 61.027 55.000 11.32 0.00 0.00 5.68
496 547 1.933853 GTAGGCTTGAACATGCTACCG 59.066 52.381 11.32 0.00 0.00 4.02
497 548 2.289565 GGTAGGCTTGAACATGCTACC 58.710 52.381 16.54 16.54 33.21 3.18
498 549 1.933853 CGGTAGGCTTGAACATGCTAC 59.066 52.381 11.32 10.84 0.00 3.58
499 550 1.742411 GCGGTAGGCTTGAACATGCTA 60.742 52.381 11.32 1.97 39.11 3.49
500 551 1.026718 GCGGTAGGCTTGAACATGCT 61.027 55.000 11.32 0.00 39.11 3.79
501 552 1.429423 GCGGTAGGCTTGAACATGC 59.571 57.895 0.00 4.46 39.11 4.06
502 553 0.676466 TGGCGGTAGGCTTGAACATG 60.676 55.000 0.00 0.00 44.18 3.21
503 554 0.255890 ATGGCGGTAGGCTTGAACAT 59.744 50.000 0.00 0.00 44.18 2.71
504 555 0.676466 CATGGCGGTAGGCTTGAACA 60.676 55.000 0.00 0.00 46.46 3.18
505 556 1.376609 CCATGGCGGTAGGCTTGAAC 61.377 60.000 0.00 0.00 46.46 3.18
506 557 1.077787 CCATGGCGGTAGGCTTGAA 60.078 57.895 0.00 0.00 46.46 2.69
507 558 2.589540 CCATGGCGGTAGGCTTGA 59.410 61.111 0.00 0.00 46.46 3.02
519 570 3.087253 TACCGCCAGGGACCATGG 61.087 66.667 21.21 21.21 43.47 3.66
520 571 2.505982 CTACCGCCAGGGACCATG 59.494 66.667 0.00 0.00 43.47 3.66
521 572 2.768344 CCTACCGCCAGGGACCAT 60.768 66.667 0.00 0.00 43.47 3.55
522 573 3.549433 TTCCTACCGCCAGGGACCA 62.549 63.158 0.00 0.00 43.47 4.02
523 574 1.844544 TTTTCCTACCGCCAGGGACC 61.845 60.000 1.15 0.00 43.47 4.46
524 575 0.037160 TTTTTCCTACCGCCAGGGAC 59.963 55.000 1.15 0.00 43.47 4.46
525 576 0.326927 CTTTTTCCTACCGCCAGGGA 59.673 55.000 1.15 0.00 43.47 4.20
526 577 0.037734 ACTTTTTCCTACCGCCAGGG 59.962 55.000 1.15 0.00 43.47 4.45
527 578 1.905637 AACTTTTTCCTACCGCCAGG 58.094 50.000 0.00 0.00 45.13 4.45
528 579 3.067601 ACAAAACTTTTTCCTACCGCCAG 59.932 43.478 0.00 0.00 0.00 4.85
529 580 3.025262 ACAAAACTTTTTCCTACCGCCA 58.975 40.909 0.00 0.00 0.00 5.69
530 581 3.720949 ACAAAACTTTTTCCTACCGCC 57.279 42.857 0.00 0.00 0.00 6.13
531 582 5.824429 AGTTACAAAACTTTTTCCTACCGC 58.176 37.500 0.00 0.00 43.60 5.68
532 583 7.308169 CCCTAGTTACAAAACTTTTTCCTACCG 60.308 40.741 0.00 0.00 43.60 4.02
533 584 7.503566 ACCCTAGTTACAAAACTTTTTCCTACC 59.496 37.037 0.00 0.00 43.60 3.18
534 585 8.455903 ACCCTAGTTACAAAACTTTTTCCTAC 57.544 34.615 0.00 0.00 43.60 3.18
535 586 8.273605 TGACCCTAGTTACAAAACTTTTTCCTA 58.726 33.333 0.00 0.00 43.60 2.94
536 587 7.120716 TGACCCTAGTTACAAAACTTTTTCCT 58.879 34.615 0.00 0.00 43.60 3.36
537 588 7.283807 TCTGACCCTAGTTACAAAACTTTTTCC 59.716 37.037 0.00 0.00 43.60 3.13
538 589 8.217131 TCTGACCCTAGTTACAAAACTTTTTC 57.783 34.615 0.00 0.00 43.60 2.29
539 590 8.762481 ATCTGACCCTAGTTACAAAACTTTTT 57.238 30.769 0.00 0.00 43.60 1.94
540 591 7.996644 TGATCTGACCCTAGTTACAAAACTTTT 59.003 33.333 0.00 0.00 43.60 2.27
541 592 7.514721 TGATCTGACCCTAGTTACAAAACTTT 58.485 34.615 0.00 0.00 43.60 2.66
542 593 7.074653 TGATCTGACCCTAGTTACAAAACTT 57.925 36.000 0.00 0.00 43.60 2.66
544 595 6.183360 GCATGATCTGACCCTAGTTACAAAAC 60.183 42.308 0.00 0.00 35.72 2.43
545 596 5.880332 GCATGATCTGACCCTAGTTACAAAA 59.120 40.000 0.00 0.00 0.00 2.44
546 597 5.189736 AGCATGATCTGACCCTAGTTACAAA 59.810 40.000 0.00 0.00 0.00 2.83
547 598 4.716784 AGCATGATCTGACCCTAGTTACAA 59.283 41.667 0.00 0.00 0.00 2.41
548 599 4.100035 CAGCATGATCTGACCCTAGTTACA 59.900 45.833 0.00 0.00 39.69 2.41
549 600 4.342378 TCAGCATGATCTGACCCTAGTTAC 59.658 45.833 0.00 0.00 42.56 2.50
550 601 4.546674 TCAGCATGATCTGACCCTAGTTA 58.453 43.478 0.00 0.00 42.56 2.24
551 602 3.378512 TCAGCATGATCTGACCCTAGTT 58.621 45.455 0.00 0.00 42.56 2.24
552 603 3.037851 TCAGCATGATCTGACCCTAGT 57.962 47.619 0.00 0.00 42.56 2.57
565 616 4.702131 ACCCTTTTAGCTAACTTCAGCATG 59.298 41.667 5.45 0.00 44.35 4.06
566 617 4.923415 ACCCTTTTAGCTAACTTCAGCAT 58.077 39.130 5.45 0.00 44.35 3.79
567 618 4.202419 TGACCCTTTTAGCTAACTTCAGCA 60.202 41.667 5.45 0.00 44.35 4.41
568 619 4.324267 TGACCCTTTTAGCTAACTTCAGC 58.676 43.478 5.45 0.00 42.12 4.26
569 620 6.294010 GGTTTGACCCTTTTAGCTAACTTCAG 60.294 42.308 5.45 0.26 30.04 3.02
570 621 5.533528 GGTTTGACCCTTTTAGCTAACTTCA 59.466 40.000 5.45 2.01 30.04 3.02
571 622 5.533528 TGGTTTGACCCTTTTAGCTAACTTC 59.466 40.000 5.45 0.00 37.50 3.01
572 623 5.451354 TGGTTTGACCCTTTTAGCTAACTT 58.549 37.500 5.45 0.00 37.50 2.66
573 624 5.056553 TGGTTTGACCCTTTTAGCTAACT 57.943 39.130 5.45 0.00 37.50 2.24
574 625 5.475564 TCATGGTTTGACCCTTTTAGCTAAC 59.524 40.000 5.45 0.00 37.50 2.34
575 626 5.636123 TCATGGTTTGACCCTTTTAGCTAA 58.364 37.500 0.86 0.86 37.50 3.09
576 627 5.249780 TCATGGTTTGACCCTTTTAGCTA 57.750 39.130 0.00 0.00 37.50 3.32
577 628 4.112634 TCATGGTTTGACCCTTTTAGCT 57.887 40.909 0.00 0.00 37.50 3.32
578 629 4.864704 TTCATGGTTTGACCCTTTTAGC 57.135 40.909 0.00 0.00 37.50 3.09
579 630 8.558700 CAAAATTTCATGGTTTGACCCTTTTAG 58.441 33.333 0.00 0.00 37.50 1.85
580 631 7.012799 GCAAAATTTCATGGTTTGACCCTTTTA 59.987 33.333 12.99 0.00 37.50 1.52
581 632 6.183360 GCAAAATTTCATGGTTTGACCCTTTT 60.183 34.615 12.99 0.00 37.50 2.27
582 633 5.299028 GCAAAATTTCATGGTTTGACCCTTT 59.701 36.000 12.99 0.00 37.50 3.11
583 634 4.821260 GCAAAATTTCATGGTTTGACCCTT 59.179 37.500 12.99 0.00 37.50 3.95
584 635 4.388485 GCAAAATTTCATGGTTTGACCCT 58.612 39.130 12.99 0.00 37.50 4.34
585 636 3.501828 GGCAAAATTTCATGGTTTGACCC 59.498 43.478 12.99 5.34 37.50 4.46
586 637 4.213906 CAGGCAAAATTTCATGGTTTGACC 59.786 41.667 11.76 12.00 40.49 4.02
587 638 5.055812 TCAGGCAAAATTTCATGGTTTGAC 58.944 37.500 12.99 10.98 40.01 3.18
588 639 5.287674 TCAGGCAAAATTTCATGGTTTGA 57.712 34.783 12.99 0.00 34.80 2.69
589 640 5.470777 ACATCAGGCAAAATTTCATGGTTTG 59.529 36.000 0.00 0.68 35.74 2.93
590 641 5.623169 ACATCAGGCAAAATTTCATGGTTT 58.377 33.333 0.00 0.00 0.00 3.27
591 642 5.231702 ACATCAGGCAAAATTTCATGGTT 57.768 34.783 0.00 0.00 0.00 3.67
592 643 4.895668 ACATCAGGCAAAATTTCATGGT 57.104 36.364 0.00 0.00 0.00 3.55
593 644 5.239351 TCAACATCAGGCAAAATTTCATGG 58.761 37.500 0.00 0.00 0.00 3.66
594 645 6.978343 ATCAACATCAGGCAAAATTTCATG 57.022 33.333 0.00 0.00 0.00 3.07
595 646 6.128117 GCAATCAACATCAGGCAAAATTTCAT 60.128 34.615 0.00 0.00 0.00 2.57
596 647 5.179742 GCAATCAACATCAGGCAAAATTTCA 59.820 36.000 0.00 0.00 0.00 2.69
597 648 5.410439 AGCAATCAACATCAGGCAAAATTTC 59.590 36.000 0.00 0.00 0.00 2.17
598 649 5.310451 AGCAATCAACATCAGGCAAAATTT 58.690 33.333 0.00 0.00 0.00 1.82
599 650 4.901868 AGCAATCAACATCAGGCAAAATT 58.098 34.783 0.00 0.00 0.00 1.82
600 651 4.501071 GAGCAATCAACATCAGGCAAAAT 58.499 39.130 0.00 0.00 0.00 1.82
601 652 3.612241 CGAGCAATCAACATCAGGCAAAA 60.612 43.478 0.00 0.00 0.00 2.44
602 653 2.095110 CGAGCAATCAACATCAGGCAAA 60.095 45.455 0.00 0.00 0.00 3.68
603 654 1.469703 CGAGCAATCAACATCAGGCAA 59.530 47.619 0.00 0.00 0.00 4.52
604 655 1.089112 CGAGCAATCAACATCAGGCA 58.911 50.000 0.00 0.00 0.00 4.75
605 656 0.379669 CCGAGCAATCAACATCAGGC 59.620 55.000 0.00 0.00 0.00 4.85
606 657 1.019673 CCCGAGCAATCAACATCAGG 58.980 55.000 0.00 0.00 0.00 3.86
607 658 0.379669 GCCCGAGCAATCAACATCAG 59.620 55.000 0.00 0.00 39.53 2.90
608 659 1.368345 CGCCCGAGCAATCAACATCA 61.368 55.000 0.00 0.00 39.83 3.07
609 660 1.089481 TCGCCCGAGCAATCAACATC 61.089 55.000 0.00 0.00 39.83 3.06
610 661 1.078497 TCGCCCGAGCAATCAACAT 60.078 52.632 0.00 0.00 39.83 2.71
611 662 1.741401 CTCGCCCGAGCAATCAACA 60.741 57.895 4.63 0.00 39.83 3.33
612 663 1.741770 ACTCGCCCGAGCAATCAAC 60.742 57.895 16.81 0.00 45.54 3.18
613 664 1.741401 CACTCGCCCGAGCAATCAA 60.741 57.895 16.81 0.00 45.54 2.57
614 665 2.125552 CACTCGCCCGAGCAATCA 60.126 61.111 16.81 0.00 45.54 2.57
615 666 1.880340 CTCACTCGCCCGAGCAATC 60.880 63.158 16.81 0.00 45.54 2.67
616 667 2.185350 CTCACTCGCCCGAGCAAT 59.815 61.111 16.81 0.00 45.54 3.56
620 671 1.064946 CTAAGCTCACTCGCCCGAG 59.935 63.158 15.46 15.46 46.91 4.63
621 672 3.064987 GCTAAGCTCACTCGCCCGA 62.065 63.158 0.00 0.00 0.00 5.14
622 673 2.583593 GCTAAGCTCACTCGCCCG 60.584 66.667 0.00 0.00 0.00 6.13
623 674 2.001361 TACGCTAAGCTCACTCGCCC 62.001 60.000 0.00 0.00 0.00 6.13
624 675 0.179145 TTACGCTAAGCTCACTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
625 676 1.781998 GATTACGCTAAGCTCACTCGC 59.218 52.381 0.00 0.00 0.00 5.03
626 677 2.784380 GTGATTACGCTAAGCTCACTCG 59.216 50.000 0.00 0.00 34.73 4.18
627 678 3.548268 GTGTGATTACGCTAAGCTCACTC 59.452 47.826 14.83 0.58 42.14 3.51
628 679 3.056821 TGTGTGATTACGCTAAGCTCACT 60.057 43.478 19.05 0.00 44.29 3.41
629 680 3.060895 GTGTGTGATTACGCTAAGCTCAC 59.939 47.826 15.06 15.06 44.26 3.51
630 681 3.056821 AGTGTGTGATTACGCTAAGCTCA 60.057 43.478 2.66 0.00 39.47 4.26
631 682 3.512680 AGTGTGTGATTACGCTAAGCTC 58.487 45.455 2.66 0.00 39.47 4.09
632 683 3.594603 AGTGTGTGATTACGCTAAGCT 57.405 42.857 2.66 0.00 39.47 3.74
633 684 3.062234 GGAAGTGTGTGATTACGCTAAGC 59.938 47.826 2.66 0.00 40.30 3.09
634 685 4.242475 TGGAAGTGTGTGATTACGCTAAG 58.758 43.478 2.66 0.00 40.30 2.18
635 686 4.260139 TGGAAGTGTGTGATTACGCTAA 57.740 40.909 2.66 0.00 40.30 3.09
636 687 3.945981 TGGAAGTGTGTGATTACGCTA 57.054 42.857 2.66 0.00 40.30 4.26
637 688 2.831685 TGGAAGTGTGTGATTACGCT 57.168 45.000 2.66 0.00 42.81 5.07
638 689 3.364964 CCTTTGGAAGTGTGTGATTACGC 60.365 47.826 0.00 0.00 37.82 4.42
639 690 4.062293 TCCTTTGGAAGTGTGTGATTACG 58.938 43.478 0.00 0.00 0.00 3.18
640 691 4.819630 TGTCCTTTGGAAGTGTGTGATTAC 59.180 41.667 0.00 0.00 31.38 1.89
654 705 5.237127 GCTTTTCTTTTGGATTGTCCTTTGG 59.763 40.000 0.00 0.00 37.46 3.28
656 707 5.104569 TGGCTTTTCTTTTGGATTGTCCTTT 60.105 36.000 0.00 0.00 37.46 3.11
664 715 5.010012 CAGTACTGTGGCTTTTCTTTTGGAT 59.990 40.000 15.06 0.00 0.00 3.41
673 724 3.403038 CACTAGCAGTACTGTGGCTTTT 58.597 45.455 23.44 3.30 39.01 2.27
680 731 3.692101 CACTCTAGCACTAGCAGTACTGT 59.308 47.826 23.44 12.90 45.49 3.55
733 784 1.349067 AAGTACCACCCACAGTCCTC 58.651 55.000 0.00 0.00 0.00 3.71
735 786 2.614734 GCTAAAGTACCACCCACAGTCC 60.615 54.545 0.00 0.00 0.00 3.85
743 794 2.194201 TTGGCTGCTAAAGTACCACC 57.806 50.000 0.00 0.00 0.00 4.61
760 811 2.155732 CGTCGCTTCCATCCGATTATTG 59.844 50.000 0.00 0.00 35.76 1.90
777 828 1.299850 TGAACAGTGAGCACCGTCG 60.300 57.895 0.00 0.00 0.00 5.12
807 858 3.373130 GTGTTTATTAACCTCCGGTCAGC 59.627 47.826 0.00 0.00 33.12 4.26
809 860 3.006752 ACGTGTTTATTAACCTCCGGTCA 59.993 43.478 0.00 0.00 33.12 4.02
812 863 3.547468 CGTACGTGTTTATTAACCTCCGG 59.453 47.826 7.22 0.00 33.15 5.14
813 864 4.165779 ACGTACGTGTTTATTAACCTCCG 58.834 43.478 22.14 0.00 33.15 4.63
814 865 7.575332 TTTACGTACGTGTTTATTAACCTCC 57.425 36.000 30.25 0.00 33.15 4.30
876 927 2.435059 GCGGACAAGGGAGTGAGC 60.435 66.667 0.00 0.00 0.00 4.26
877 928 0.460987 GATGCGGACAAGGGAGTGAG 60.461 60.000 0.00 0.00 0.00 3.51
878 929 0.904865 AGATGCGGACAAGGGAGTGA 60.905 55.000 0.00 0.00 0.00 3.41
879 930 0.824109 TAGATGCGGACAAGGGAGTG 59.176 55.000 0.00 0.00 0.00 3.51
880 931 1.115467 CTAGATGCGGACAAGGGAGT 58.885 55.000 0.00 0.00 0.00 3.85
924 975 4.415512 TCAAGGGAAGGAAGGAAAGAAAGA 59.584 41.667 0.00 0.00 0.00 2.52
925 976 4.729868 TCAAGGGAAGGAAGGAAAGAAAG 58.270 43.478 0.00 0.00 0.00 2.62
926 977 4.806952 TCAAGGGAAGGAAGGAAAGAAA 57.193 40.909 0.00 0.00 0.00 2.52
927 978 4.806952 TTCAAGGGAAGGAAGGAAAGAA 57.193 40.909 0.00 0.00 0.00 2.52
986 1046 0.321122 GCTGGGTTGGACTCTGACTG 60.321 60.000 0.00 0.00 0.00 3.51
1008 1068 2.011046 GCCATCTGCTTTCTTCTCGCT 61.011 52.381 0.00 0.00 36.87 4.93
1009 1069 0.376502 GCCATCTGCTTTCTTCTCGC 59.623 55.000 0.00 0.00 36.87 5.03
1010 1070 0.649475 CGCCATCTGCTTTCTTCTCG 59.351 55.000 0.00 0.00 38.05 4.04
1013 1073 0.376502 GCTCGCCATCTGCTTTCTTC 59.623 55.000 0.00 0.00 38.05 2.87
1014 1074 0.321919 TGCTCGCCATCTGCTTTCTT 60.322 50.000 0.00 0.00 38.05 2.52
1015 1075 0.321919 TTGCTCGCCATCTGCTTTCT 60.322 50.000 0.00 0.00 38.05 2.52
1016 1076 0.098376 CTTGCTCGCCATCTGCTTTC 59.902 55.000 0.00 0.00 38.05 2.62
1017 1077 1.310933 CCTTGCTCGCCATCTGCTTT 61.311 55.000 0.00 0.00 38.05 3.51
1018 1078 1.748122 CCTTGCTCGCCATCTGCTT 60.748 57.895 0.00 0.00 38.05 3.91
1019 1079 2.124819 CCTTGCTCGCCATCTGCT 60.125 61.111 0.00 0.00 38.05 4.24
1020 1080 3.885521 GCCTTGCTCGCCATCTGC 61.886 66.667 0.00 0.00 0.00 4.26
1021 1081 3.570638 CGCCTTGCTCGCCATCTG 61.571 66.667 0.00 0.00 0.00 2.90
1128 1188 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1129 1189 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1130 1190 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1279 1348 0.914644 TTGGCCATCCTCTTCTCCTG 59.085 55.000 6.09 0.00 0.00 3.86
1323 1392 0.394899 CCACCTTCATGGCCTCCTTC 60.395 60.000 3.32 0.00 40.22 3.46
1332 1401 2.276740 GCCCCCTCCACCTTCATG 59.723 66.667 0.00 0.00 0.00 3.07
1333 1402 3.023735 GGCCCCCTCCACCTTCAT 61.024 66.667 0.00 0.00 0.00 2.57
1749 1824 4.899239 GCGGCGAGGAGGATGTGG 62.899 72.222 12.98 0.00 0.00 4.17
2153 2228 4.090057 GGGACGCGAACTTGCTGC 62.090 66.667 15.93 0.00 0.00 5.25
2211 2286 2.032681 ACCGCCTTCTTGTGCTCC 59.967 61.111 0.00 0.00 0.00 4.70
2512 2593 1.153429 GCCACGGTGGGTATCACTC 60.153 63.158 27.41 5.40 45.38 3.51
2583 2678 2.047274 TAGCTGCACCAACGAGCC 60.047 61.111 1.02 0.00 32.86 4.70
2612 2707 7.175104 AGAACTAATTAATGCAGGGAGTCAAA 58.825 34.615 0.00 0.00 0.00 2.69
2625 2720 7.741554 ACAGTGGAGAGGAGAACTAATTAAT 57.258 36.000 0.00 0.00 0.00 1.40
2652 2747 4.775236 AGCTTAGATTTAGCAAGGACCAG 58.225 43.478 0.00 0.00 41.11 4.00
2677 2777 8.545229 TGAGATTTTCTTTAGAGAAGAAGCAG 57.455 34.615 0.00 0.00 42.55 4.24
2713 2813 0.250597 GTTAGTTGGGGCACTTCGGT 60.251 55.000 0.00 0.00 0.00 4.69
2714 2814 0.250553 TGTTAGTTGGGGCACTTCGG 60.251 55.000 0.00 0.00 0.00 4.30
2715 2815 1.156736 CTGTTAGTTGGGGCACTTCG 58.843 55.000 0.00 0.00 0.00 3.79
2716 2816 2.271944 ACTGTTAGTTGGGGCACTTC 57.728 50.000 0.00 0.00 0.00 3.01
2717 2817 2.440253 TGTACTGTTAGTTGGGGCACTT 59.560 45.455 0.00 0.00 0.00 3.16
2718 2818 2.051692 TGTACTGTTAGTTGGGGCACT 58.948 47.619 0.00 0.00 0.00 4.40
2719 2819 2.554370 TGTACTGTTAGTTGGGGCAC 57.446 50.000 0.00 0.00 0.00 5.01
2720 2820 3.799432 ATTGTACTGTTAGTTGGGGCA 57.201 42.857 0.00 0.00 0.00 5.36
2721 2821 5.462530 AAAATTGTACTGTTAGTTGGGGC 57.537 39.130 0.00 0.00 0.00 5.80
2722 2822 6.266786 AGGAAAAATTGTACTGTTAGTTGGGG 59.733 38.462 0.00 0.00 0.00 4.96
2723 2823 7.145323 CAGGAAAAATTGTACTGTTAGTTGGG 58.855 38.462 0.00 0.00 0.00 4.12
2724 2824 7.145323 CCAGGAAAAATTGTACTGTTAGTTGG 58.855 38.462 0.00 0.00 0.00 3.77
2725 2825 6.640907 GCCAGGAAAAATTGTACTGTTAGTTG 59.359 38.462 0.00 0.00 0.00 3.16
2726 2826 6.549736 AGCCAGGAAAAATTGTACTGTTAGTT 59.450 34.615 0.00 0.00 0.00 2.24
2727 2827 6.068670 AGCCAGGAAAAATTGTACTGTTAGT 58.931 36.000 0.00 0.00 0.00 2.24
2728 2828 6.206634 TGAGCCAGGAAAAATTGTACTGTTAG 59.793 38.462 0.00 0.00 0.00 2.34
2729 2829 6.065374 TGAGCCAGGAAAAATTGTACTGTTA 58.935 36.000 0.00 0.00 0.00 2.41
2730 2830 4.892934 TGAGCCAGGAAAAATTGTACTGTT 59.107 37.500 0.00 0.00 0.00 3.16
2731 2831 4.469657 TGAGCCAGGAAAAATTGTACTGT 58.530 39.130 0.00 0.00 0.00 3.55
2732 2832 5.644644 GATGAGCCAGGAAAAATTGTACTG 58.355 41.667 0.00 0.00 0.00 2.74
2733 2833 4.396166 CGATGAGCCAGGAAAAATTGTACT 59.604 41.667 0.00 0.00 0.00 2.73
2734 2834 4.156008 ACGATGAGCCAGGAAAAATTGTAC 59.844 41.667 0.00 0.00 0.00 2.90
2735 2835 4.155826 CACGATGAGCCAGGAAAAATTGTA 59.844 41.667 0.00 0.00 0.00 2.41
2736 2836 3.057315 CACGATGAGCCAGGAAAAATTGT 60.057 43.478 0.00 0.00 0.00 2.71
2737 2837 3.057315 ACACGATGAGCCAGGAAAAATTG 60.057 43.478 0.00 0.00 0.00 2.32
2738 2838 3.157087 ACACGATGAGCCAGGAAAAATT 58.843 40.909 0.00 0.00 0.00 1.82
2739 2839 2.795329 ACACGATGAGCCAGGAAAAAT 58.205 42.857 0.00 0.00 0.00 1.82
2740 2840 2.270352 ACACGATGAGCCAGGAAAAA 57.730 45.000 0.00 0.00 0.00 1.94
2741 2841 2.301870 AGTACACGATGAGCCAGGAAAA 59.698 45.455 0.00 0.00 0.00 2.29
2742 2842 1.899814 AGTACACGATGAGCCAGGAAA 59.100 47.619 0.00 0.00 0.00 3.13
2743 2843 1.204704 CAGTACACGATGAGCCAGGAA 59.795 52.381 0.00 0.00 0.00 3.36
2744 2844 0.817654 CAGTACACGATGAGCCAGGA 59.182 55.000 0.00 0.00 0.00 3.86
2745 2845 0.817654 TCAGTACACGATGAGCCAGG 59.182 55.000 0.00 0.00 0.00 4.45
2746 2846 2.099756 TGATCAGTACACGATGAGCCAG 59.900 50.000 2.79 0.00 30.86 4.85
2747 2847 2.099405 TGATCAGTACACGATGAGCCA 58.901 47.619 2.79 0.00 30.86 4.75
2748 2848 2.099921 ACTGATCAGTACACGATGAGCC 59.900 50.000 26.87 0.00 40.43 4.70
2749 2849 3.428746 ACTGATCAGTACACGATGAGC 57.571 47.619 26.87 2.27 40.43 4.26
2759 2859 5.479306 GCAAGGAAACTGTACTGATCAGTA 58.521 41.667 27.96 27.96 44.03 2.74
2760 2860 4.319177 GCAAGGAAACTGTACTGATCAGT 58.681 43.478 30.11 30.11 46.30 3.41
2761 2861 3.369147 CGCAAGGAAACTGTACTGATCAG 59.631 47.826 21.37 21.37 42.68 2.90
2762 2862 3.325870 CGCAAGGAAACTGTACTGATCA 58.674 45.455 6.77 0.00 42.68 2.92
2763 2863 2.094417 GCGCAAGGAAACTGTACTGATC 59.906 50.000 0.30 4.57 42.68 2.92
2764 2864 2.076863 GCGCAAGGAAACTGTACTGAT 58.923 47.619 0.30 0.00 42.68 2.90
2765 2865 1.508632 GCGCAAGGAAACTGTACTGA 58.491 50.000 0.30 0.00 42.68 3.41
2766 2866 0.163788 CGCGCAAGGAAACTGTACTG 59.836 55.000 8.75 0.00 42.68 2.74
2767 2867 0.032952 TCGCGCAAGGAAACTGTACT 59.967 50.000 8.75 0.00 42.68 2.73
2768 2868 0.163146 GTCGCGCAAGGAAACTGTAC 59.837 55.000 8.75 0.00 42.68 2.90
2769 2869 0.947180 GGTCGCGCAAGGAAACTGTA 60.947 55.000 8.75 0.00 42.68 2.74
2770 2870 2.251642 GGTCGCGCAAGGAAACTGT 61.252 57.895 8.75 0.00 42.68 3.55
2771 2871 2.556287 GGTCGCGCAAGGAAACTG 59.444 61.111 8.75 0.00 42.68 3.16
2773 2873 3.343421 ACGGTCGCGCAAGGAAAC 61.343 61.111 8.75 0.00 38.28 2.78
2774 2874 2.696409 TACACGGTCGCGCAAGGAAA 62.696 55.000 8.75 0.00 38.28 3.13
2775 2875 2.495366 ATACACGGTCGCGCAAGGAA 62.495 55.000 8.75 0.00 38.28 3.36
2776 2876 2.877360 GATACACGGTCGCGCAAGGA 62.877 60.000 8.75 0.00 38.28 3.36
2777 2877 2.508439 ATACACGGTCGCGCAAGG 60.508 61.111 8.75 0.00 38.28 3.61
2778 2878 1.145759 ATGATACACGGTCGCGCAAG 61.146 55.000 8.75 0.00 43.44 4.01
2779 2879 0.738063 AATGATACACGGTCGCGCAA 60.738 50.000 8.75 0.00 0.00 4.85
2780 2880 1.143373 GAATGATACACGGTCGCGCA 61.143 55.000 8.75 0.00 0.00 6.09
2781 2881 1.558383 GAATGATACACGGTCGCGC 59.442 57.895 0.00 0.00 0.00 6.86
2782 2882 1.537289 CCGAATGATACACGGTCGCG 61.537 60.000 0.00 0.00 41.47 5.87
2783 2883 0.248743 TCCGAATGATACACGGTCGC 60.249 55.000 0.00 0.00 45.71 5.19
2784 2884 1.202211 TGTCCGAATGATACACGGTCG 60.202 52.381 0.00 0.00 45.71 4.79
2785 2885 2.572191 TGTCCGAATGATACACGGTC 57.428 50.000 0.00 0.00 45.71 4.79
2786 2886 3.118920 TGAATGTCCGAATGATACACGGT 60.119 43.478 0.00 0.00 45.71 4.83
2787 2887 3.453424 TGAATGTCCGAATGATACACGG 58.547 45.455 0.00 0.00 46.71 4.94
2788 2888 3.060272 GCTGAATGTCCGAATGATACACG 60.060 47.826 0.00 0.00 0.00 4.49
2789 2889 4.025396 CAGCTGAATGTCCGAATGATACAC 60.025 45.833 8.42 0.00 0.00 2.90
2790 2890 4.122046 CAGCTGAATGTCCGAATGATACA 58.878 43.478 8.42 0.00 0.00 2.29
2791 2891 3.496130 CCAGCTGAATGTCCGAATGATAC 59.504 47.826 17.39 0.00 0.00 2.24
2792 2892 3.732212 CCAGCTGAATGTCCGAATGATA 58.268 45.455 17.39 0.00 0.00 2.15
2793 2893 2.569059 CCAGCTGAATGTCCGAATGAT 58.431 47.619 17.39 0.00 0.00 2.45
2794 2894 2.013563 GCCAGCTGAATGTCCGAATGA 61.014 52.381 17.39 0.00 0.00 2.57
2795 2895 0.379669 GCCAGCTGAATGTCCGAATG 59.620 55.000 17.39 0.00 0.00 2.67
2796 2896 0.254178 AGCCAGCTGAATGTCCGAAT 59.746 50.000 17.39 0.00 0.00 3.34
2797 2897 0.391661 GAGCCAGCTGAATGTCCGAA 60.392 55.000 17.39 0.00 0.00 4.30
2798 2898 1.219124 GAGCCAGCTGAATGTCCGA 59.781 57.895 17.39 0.00 0.00 4.55
2799 2899 0.463295 ATGAGCCAGCTGAATGTCCG 60.463 55.000 17.39 0.00 0.00 4.79
2800 2900 1.307097 GATGAGCCAGCTGAATGTCC 58.693 55.000 17.39 0.00 0.00 4.02
2801 2901 0.935898 CGATGAGCCAGCTGAATGTC 59.064 55.000 17.39 6.46 0.00 3.06
2802 2902 0.251354 ACGATGAGCCAGCTGAATGT 59.749 50.000 17.39 0.50 0.00 2.71
2803 2903 1.063616 CAACGATGAGCCAGCTGAATG 59.936 52.381 17.39 0.00 0.00 2.67
2804 2904 1.339438 ACAACGATGAGCCAGCTGAAT 60.339 47.619 17.39 2.14 0.00 2.57
2805 2905 0.035317 ACAACGATGAGCCAGCTGAA 59.965 50.000 17.39 0.00 0.00 3.02
2806 2906 0.390340 GACAACGATGAGCCAGCTGA 60.390 55.000 17.39 0.00 0.00 4.26
2807 2907 0.390866 AGACAACGATGAGCCAGCTG 60.391 55.000 6.78 6.78 0.00 4.24
2808 2908 0.390866 CAGACAACGATGAGCCAGCT 60.391 55.000 0.00 0.00 0.00 4.24
2809 2909 1.975363 GCAGACAACGATGAGCCAGC 61.975 60.000 0.00 0.00 0.00 4.85
2810 2910 0.671472 TGCAGACAACGATGAGCCAG 60.671 55.000 0.00 0.00 0.00 4.85
2811 2911 0.036105 ATGCAGACAACGATGAGCCA 60.036 50.000 0.00 0.00 0.00 4.75
2812 2912 1.089920 AATGCAGACAACGATGAGCC 58.910 50.000 0.00 0.00 0.00 4.70
2813 2913 1.733912 TCAATGCAGACAACGATGAGC 59.266 47.619 0.00 1.25 0.00 4.26
2814 2914 3.936661 CATCAATGCAGACAACGATGAG 58.063 45.455 0.00 0.00 39.29 2.90
2827 2927 4.969293 ACTGCACAGTGTAGCATCAATGC 61.969 47.826 17.86 6.88 46.33 3.56
2828 2928 2.745821 ACTGCACAGTGTAGCATCAATG 59.254 45.455 17.86 10.02 40.75 2.82
2829 2929 3.063510 ACTGCACAGTGTAGCATCAAT 57.936 42.857 17.86 0.00 40.75 2.57
2830 2930 2.549064 ACTGCACAGTGTAGCATCAA 57.451 45.000 17.86 0.10 40.75 2.57
2840 2940 2.192979 CCCCACACACTGCACAGT 59.807 61.111 0.00 0.00 43.61 3.55
2841 2941 2.395988 TAGCCCCACACACTGCACAG 62.396 60.000 0.00 0.00 0.00 3.66
2842 2942 1.988982 TTAGCCCCACACACTGCACA 61.989 55.000 0.00 0.00 0.00 4.57
2843 2943 0.821711 TTTAGCCCCACACACTGCAC 60.822 55.000 0.00 0.00 0.00 4.57
2844 2944 0.112218 ATTTAGCCCCACACACTGCA 59.888 50.000 0.00 0.00 0.00 4.41
2845 2945 1.256812 AATTTAGCCCCACACACTGC 58.743 50.000 0.00 0.00 0.00 4.40
2846 2946 2.095263 CGAAATTTAGCCCCACACACTG 60.095 50.000 0.00 0.00 0.00 3.66
2847 2947 2.159382 CGAAATTTAGCCCCACACACT 58.841 47.619 0.00 0.00 0.00 3.55
2848 2948 1.883926 ACGAAATTTAGCCCCACACAC 59.116 47.619 0.00 0.00 0.00 3.82
2849 2949 1.883275 CACGAAATTTAGCCCCACACA 59.117 47.619 0.00 0.00 0.00 3.72
2850 2950 1.883926 ACACGAAATTTAGCCCCACAC 59.116 47.619 0.00 0.00 0.00 3.82
2851 2951 2.279935 ACACGAAATTTAGCCCCACA 57.720 45.000 0.00 0.00 0.00 4.17
2852 2952 3.653539 AAACACGAAATTTAGCCCCAC 57.346 42.857 0.00 0.00 0.00 4.61
2853 2953 3.637229 TCAAAACACGAAATTTAGCCCCA 59.363 39.130 0.00 0.00 0.00 4.96
2854 2954 3.985279 GTCAAAACACGAAATTTAGCCCC 59.015 43.478 0.00 0.00 0.00 5.80
2918 3027 4.123506 GCGAAAGGGTCAAATTCCAAAAA 58.876 39.130 0.00 0.00 0.00 1.94
2922 3031 1.203001 AGGCGAAAGGGTCAAATTCCA 60.203 47.619 0.00 0.00 0.00 3.53
2925 3034 2.443416 GGTAGGCGAAAGGGTCAAATT 58.557 47.619 0.00 0.00 0.00 1.82
3134 3257 8.047310 GGTTGAGGAAAGAGAGGAAATATACAA 58.953 37.037 0.00 0.00 0.00 2.41
3137 3260 7.403231 AGTGGTTGAGGAAAGAGAGGAAATATA 59.597 37.037 0.00 0.00 0.00 0.86
3151 3274 2.553028 GCCTGAATGAGTGGTTGAGGAA 60.553 50.000 0.00 0.00 32.46 3.36
3542 3665 8.303156 CACATAAGGAAATCACAAACATAACCA 58.697 33.333 0.00 0.00 0.00 3.67
3568 3691 3.430895 CCAAAAGCAATGAAGCACATCAC 59.569 43.478 0.00 0.00 38.38 3.06
3587 3710 8.375493 AGATCTAGGTACACAAACTATTCCAA 57.625 34.615 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.