Multiple sequence alignment - TraesCS5B01G500500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G500500 chr5B 100.000 5948 0 0 1 5948 667671242 667677189 0.000000e+00 10984.0
1 TraesCS5B01G500500 chr5B 87.230 971 92 24 2261 3215 503214298 503215252 0.000000e+00 1077.0
2 TraesCS5B01G500500 chr5B 84.274 992 91 29 4135 5109 503215871 503216814 0.000000e+00 907.0
3 TraesCS5B01G500500 chr5B 88.608 316 30 5 3653 3965 503215564 503215876 4.350000e-101 379.0
4 TraesCS5B01G500500 chr5B 100.000 169 0 0 1852 2020 688712386 688712218 4.480000e-81 313.0
5 TraesCS5B01G500500 chr5B 85.714 294 31 5 3360 3643 503215329 503215621 3.480000e-77 300.0
6 TraesCS5B01G500500 chr5B 76.591 487 61 28 999 1450 503213457 503213925 1.000000e-52 219.0
7 TraesCS5B01G500500 chr5B 89.677 155 15 1 3965 4118 556949077 556949231 4.700000e-46 196.0
8 TraesCS5B01G500500 chr5B 98.571 70 1 0 3642 3711 667674817 667674886 2.250000e-24 124.0
9 TraesCS5B01G500500 chr5B 98.571 70 1 0 3576 3645 667674883 667674952 2.250000e-24 124.0
10 TraesCS5B01G500500 chr5B 81.343 134 23 2 2430 2561 673353164 673353031 2.270000e-19 108.0
11 TraesCS5B01G500500 chr5B 81.343 134 23 2 2430 2561 673422995 673422862 2.270000e-19 108.0
12 TraesCS5B01G500500 chr5B 84.071 113 14 4 5658 5770 503217109 503217217 8.150000e-19 106.0
13 TraesCS5B01G500500 chr5B 80.597 134 24 2 2430 2561 673452539 673452406 1.050000e-17 102.0
14 TraesCS5B01G500500 chr5D 90.749 2378 121 38 3642 5948 529217864 529220213 0.000000e+00 3081.0
15 TraesCS5B01G500500 chr5D 97.483 1629 36 2 2022 3645 529216305 529217933 0.000000e+00 2776.0
16 TraesCS5B01G500500 chr5D 92.234 1867 91 23 13 1847 529214471 529216315 0.000000e+00 2595.0
17 TraesCS5B01G500500 chr5D 86.421 1031 104 27 2204 3215 416413231 416414244 0.000000e+00 1096.0
18 TraesCS5B01G500500 chr5D 84.453 997 83 31 4135 5114 416414867 416415808 0.000000e+00 917.0
19 TraesCS5B01G500500 chr5D 87.025 316 23 8 3653 3964 416414570 416414871 2.050000e-89 340.0
20 TraesCS5B01G500500 chr5D 78.486 502 56 31 993 1450 416412416 416412909 1.260000e-71 281.0
21 TraesCS5B01G500500 chr5D 88.485 165 15 3 3963 4124 240087708 240087545 4.700000e-46 196.0
22 TraesCS5B01G500500 chr5D 85.326 184 18 7 3963 4137 12270338 12270521 1.320000e-41 182.0
23 TraesCS5B01G500500 chr5D 82.090 134 22 2 2430 2561 533283994 533283861 4.870000e-21 113.0
24 TraesCS5B01G500500 chr5A 86.276 1042 103 17 2190 3223 657379472 657380481 0.000000e+00 1096.0
25 TraesCS5B01G500500 chr5A 88.588 885 75 18 4238 5113 657381028 657381895 0.000000e+00 1051.0
26 TraesCS5B01G500500 chr5A 84.940 996 89 32 4135 5114 529086022 529086972 0.000000e+00 952.0
27 TraesCS5B01G500500 chr5A 87.875 767 72 14 2374 3132 529084956 529085709 0.000000e+00 881.0
28 TraesCS5B01G500500 chr5A 80.292 685 96 26 5271 5929 657382045 657382716 1.160000e-131 481.0
29 TraesCS5B01G500500 chr5A 90.657 289 20 5 3678 3964 657380658 657380941 1.560000e-100 377.0
30 TraesCS5B01G500500 chr5A 88.961 308 28 5 3660 3964 529085722 529086026 5.630000e-100 375.0
31 TraesCS5B01G500500 chr5A 81.169 462 32 21 827 1265 657378517 657378946 2.670000e-83 320.0
32 TraesCS5B01G500500 chr5A 76.735 490 59 36 999 1450 529084200 529084672 7.760000e-54 222.0
33 TraesCS5B01G500500 chr5A 84.615 117 16 1 610 724 657378274 657378390 1.350000e-21 115.0
34 TraesCS5B01G500500 chr4B 95.028 181 6 2 1847 2024 450466630 450466810 1.260000e-71 281.0
35 TraesCS5B01G500500 chr4A 97.041 169 2 3 1852 2020 449115502 449115337 1.260000e-71 281.0
36 TraesCS5B01G500500 chr6D 94.972 179 4 3 1844 2020 401174758 401174933 5.870000e-70 276.0
37 TraesCS5B01G500500 chr6D 91.371 197 11 5 1847 2039 430878097 430878291 1.270000e-66 265.0
38 TraesCS5B01G500500 chr6D 87.349 166 16 4 3965 4125 419422594 419422759 1.020000e-42 185.0
39 TraesCS5B01G500500 chr6D 94.872 39 0 2 3324 3360 429811560 429811598 6.440000e-05 60.2
40 TraesCS5B01G500500 chr6B 95.402 174 7 1 1852 2025 702817994 702817822 5.870000e-70 276.0
41 TraesCS5B01G500500 chr2B 94.944 178 5 3 1847 2020 737171515 737171692 5.870000e-70 276.0
42 TraesCS5B01G500500 chr6A 93.956 182 7 3 1847 2024 356284120 356284301 7.600000e-69 272.0
43 TraesCS5B01G500500 chr2A 93.514 185 7 4 1847 2027 180210239 180210422 2.730000e-68 270.0
44 TraesCS5B01G500500 chr7D 89.172 157 15 2 3962 4118 301654407 301654561 1.690000e-45 195.0
45 TraesCS5B01G500500 chrUn 87.647 170 15 4 3959 4122 96478219 96478388 6.080000e-45 193.0
46 TraesCS5B01G500500 chr2D 89.032 155 14 2 3965 4118 533659998 533659846 7.870000e-44 189.0
47 TraesCS5B01G500500 chr1D 94.000 50 2 1 3743 3792 37516654 37516702 2.300000e-09 75.0
48 TraesCS5B01G500500 chr1A 91.071 56 4 1 3737 3792 36765337 36765391 2.300000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G500500 chr5B 667671242 667677189 5947 False 3744.000000 10984 99.047333 1 5948 3 chr5B.!!$F3 5947
1 TraesCS5B01G500500 chr5B 503213457 503217217 3760 False 498.000000 1077 84.414667 999 5770 6 chr5B.!!$F2 4771
2 TraesCS5B01G500500 chr5D 529214471 529220213 5742 False 2817.333333 3081 93.488667 13 5948 3 chr5D.!!$F3 5935
3 TraesCS5B01G500500 chr5D 416412416 416415808 3392 False 658.500000 1096 84.096250 993 5114 4 chr5D.!!$F2 4121
4 TraesCS5B01G500500 chr5A 529084200 529086972 2772 False 607.500000 952 84.627750 999 5114 4 chr5A.!!$F1 4115
5 TraesCS5B01G500500 chr5A 657378274 657382716 4442 False 573.333333 1096 85.266167 610 5929 6 chr5A.!!$F2 5319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 762 0.324943 TACCTCTTCTTGGTGCCTGC 59.675 55.0 0.00 0.00 38.42 4.85 F
1142 1228 0.106519 CCCATCAATCACCCACCTCC 60.107 60.0 0.00 0.00 0.00 4.30 F
1955 2085 0.111253 AGGGGTGACTCTTGGCTTTG 59.889 55.0 0.00 0.00 38.96 2.77 F
1995 2125 0.326618 TTCAGGTGGGGATCCTCTCC 60.327 60.0 23.14 23.14 44.11 3.71 F
3617 3876 0.393537 CCGCTGCATCCCTTCTTTCT 60.394 55.0 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2066 0.111253 CAAAGCCAAGAGTCACCCCT 59.889 55.0 0.00 0.0 0.00 4.79 R
1976 2106 0.326618 GGAGAGGATCCCCACCTGAA 60.327 60.0 8.55 0.0 43.01 3.02 R
3598 3857 0.393537 AGAAAGAAGGGATGCAGCGG 60.394 55.0 0.00 0.0 0.00 5.52 R
3645 3904 0.459934 GCAGAGTGAGAGCGAGCAAT 60.460 55.0 0.00 0.0 0.00 3.56 R
5607 6025 0.252197 GGCAAGTTAGTGTCGGGGAT 59.748 55.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.868757 TCTAGAACCATCACTGAACCG 57.131 47.619 0.00 0.00 0.00 4.44
33 34 1.348064 AGAACCATCACTGAACCGGA 58.652 50.000 9.46 0.00 0.00 5.14
40 41 2.194201 TCACTGAACCGGATTTTCCC 57.806 50.000 9.46 0.00 31.13 3.97
204 215 4.217550 GGAACCATGTTTTGAATCCTCGAA 59.782 41.667 0.00 0.00 31.06 3.71
208 219 5.943416 ACCATGTTTTGAATCCTCGAACATA 59.057 36.000 0.00 0.00 38.15 2.29
213 224 9.927668 ATGTTTTGAATCCTCGAACATATTTTT 57.072 25.926 0.00 0.00 38.31 1.94
244 256 6.917477 TGTTAACATTCTTTGCATCAGTGAAC 59.083 34.615 3.59 0.00 0.00 3.18
245 257 5.518848 AACATTCTTTGCATCAGTGAACA 57.481 34.783 0.00 0.00 0.00 3.18
262 274 5.530915 AGTGAACATTTTTCTGAACCGATGA 59.469 36.000 11.50 0.00 0.00 2.92
335 347 8.854979 TGTGTATTTCATGAACACTTTTCAAG 57.145 30.769 23.06 0.00 43.09 3.02
438 451 5.827666 ACGTTTTTGGAGTTAATGAACCTG 58.172 37.500 0.00 0.00 36.08 4.00
443 456 8.941977 GTTTTTGGAGTTAATGAACCTGTTTTT 58.058 29.630 0.00 0.00 36.08 1.94
568 581 9.771534 AATCCCTAATTTTTGAAAATTCGTGAA 57.228 25.926 15.48 0.98 43.12 3.18
653 669 8.874745 TTTTTCTTGAATTCGATATTCGTGAC 57.125 30.769 0.04 0.00 41.35 3.67
654 670 7.827819 TTTCTTGAATTCGATATTCGTGACT 57.172 32.000 0.04 0.00 41.35 3.41
739 755 4.537135 TGCAAGTACTACCTCTTCTTGG 57.463 45.455 0.00 0.00 36.85 3.61
743 759 2.832733 AGTACTACCTCTTCTTGGTGCC 59.167 50.000 0.00 0.00 38.42 5.01
744 760 2.031495 ACTACCTCTTCTTGGTGCCT 57.969 50.000 0.00 0.00 38.42 4.75
746 762 0.324943 TACCTCTTCTTGGTGCCTGC 59.675 55.000 0.00 0.00 38.42 4.85
766 782 1.393603 GGCCCACATAAAGCTTCTCC 58.606 55.000 0.00 0.00 0.00 3.71
771 787 3.562176 CCCACATAAAGCTTCTCCCAGTT 60.562 47.826 0.00 0.00 0.00 3.16
781 797 1.410004 TCTCCCAGTTAGCCCGTATG 58.590 55.000 0.00 0.00 0.00 2.39
1078 1129 0.666274 CTACAACGAGCGCCTCAACA 60.666 55.000 2.29 0.00 0.00 3.33
1112 1163 2.501723 TCTACCTCATCTTCAAGCACCC 59.498 50.000 0.00 0.00 0.00 4.61
1142 1228 0.106519 CCCATCAATCACCCACCTCC 60.107 60.000 0.00 0.00 0.00 4.30
1145 1231 0.253044 ATCAATCACCCACCTCCGTG 59.747 55.000 0.00 0.00 39.91 4.94
1184 1277 6.522054 TCTTTCGGTAGTTGAGATCTTTGTT 58.478 36.000 0.00 0.00 0.00 2.83
1206 1306 1.076533 CGGAGGTCGTTTGTGATCCG 61.077 60.000 0.00 0.00 43.09 4.18
1368 1486 6.502863 TGTATAAGACCCCTTTGGAACTAACT 59.497 38.462 0.00 0.00 38.00 2.24
1369 1487 7.679453 TGTATAAGACCCCTTTGGAACTAACTA 59.321 37.037 0.00 0.00 38.00 2.24
1370 1488 5.500546 AAGACCCCTTTGGAACTAACTAG 57.499 43.478 0.00 0.00 38.00 2.57
1454 1580 2.928334 CTGGCAAATGCTAGTGATCCT 58.072 47.619 10.28 0.00 43.52 3.24
1557 1683 8.885494 ACTGAAAATTTTGTTGCTAATTGCTA 57.115 26.923 8.47 0.00 43.37 3.49
1570 1696 1.303309 ATTGCTATGAGGTTCGCAGC 58.697 50.000 0.00 0.00 33.48 5.25
1573 1699 1.522092 CTATGAGGTTCGCAGCCCA 59.478 57.895 0.00 0.00 0.00 5.36
1661 1787 4.322198 CCTCTGCAATTGCCTATTGTGTTT 60.322 41.667 26.94 0.00 44.52 2.83
1849 1979 9.807386 AAGACGATTTCAAAAATAGTTTCTACG 57.193 29.630 0.00 0.00 0.00 3.51
1850 1980 8.440833 AGACGATTTCAAAAATAGTTTCTACGG 58.559 33.333 0.00 0.00 0.00 4.02
1851 1981 8.091385 ACGATTTCAAAAATAGTTTCTACGGT 57.909 30.769 0.00 0.00 0.00 4.83
1852 1982 8.562052 ACGATTTCAAAAATAGTTTCTACGGTT 58.438 29.630 0.00 0.00 0.00 4.44
1853 1983 9.047871 CGATTTCAAAAATAGTTTCTACGGTTC 57.952 33.333 0.00 0.00 0.00 3.62
1854 1984 8.944212 ATTTCAAAAATAGTTTCTACGGTTCG 57.056 30.769 0.00 0.00 0.00 3.95
1855 1985 6.470557 TCAAAAATAGTTTCTACGGTTCGG 57.529 37.500 0.00 0.00 0.00 4.30
1856 1986 4.934075 AAAATAGTTTCTACGGTTCGGC 57.066 40.909 0.00 0.00 0.00 5.54
1857 1987 2.591571 ATAGTTTCTACGGTTCGGCC 57.408 50.000 0.00 0.00 0.00 6.13
1858 1988 0.532115 TAGTTTCTACGGTTCGGCCC 59.468 55.000 0.00 0.00 0.00 5.80
1867 1997 4.340246 GTTCGGCCCGGTTTCCCT 62.340 66.667 1.90 0.00 0.00 4.20
1868 1998 3.572222 TTCGGCCCGGTTTCCCTT 61.572 61.111 1.90 0.00 0.00 3.95
1869 1999 2.222727 TTCGGCCCGGTTTCCCTTA 61.223 57.895 1.90 0.00 0.00 2.69
1870 2000 1.564483 TTCGGCCCGGTTTCCCTTAT 61.564 55.000 1.90 0.00 0.00 1.73
1871 2001 0.690411 TCGGCCCGGTTTCCCTTATA 60.690 55.000 1.90 0.00 0.00 0.98
1872 2002 0.180878 CGGCCCGGTTTCCCTTATAA 59.819 55.000 0.00 0.00 0.00 0.98
1873 2003 1.408544 CGGCCCGGTTTCCCTTATAAA 60.409 52.381 0.00 0.00 0.00 1.40
1874 2004 2.026641 GGCCCGGTTTCCCTTATAAAC 58.973 52.381 0.00 0.00 36.34 2.01
1875 2005 1.672363 GCCCGGTTTCCCTTATAAACG 59.328 52.381 0.00 0.00 37.64 3.60
1876 2006 2.291365 CCCGGTTTCCCTTATAAACGG 58.709 52.381 0.00 4.42 37.64 4.44
1877 2007 2.291365 CCGGTTTCCCTTATAAACGGG 58.709 52.381 9.84 9.84 45.16 5.28
1878 2008 2.291365 CGGTTTCCCTTATAAACGGGG 58.709 52.381 9.38 6.04 40.99 5.73
1879 2009 2.356022 CGGTTTCCCTTATAAACGGGGT 60.356 50.000 9.38 0.00 40.99 4.95
1880 2010 3.282021 GGTTTCCCTTATAAACGGGGTC 58.718 50.000 9.38 2.25 40.99 4.46
1881 2011 3.308331 GGTTTCCCTTATAAACGGGGTCA 60.308 47.826 9.38 0.00 40.99 4.02
1882 2012 4.334552 GTTTCCCTTATAAACGGGGTCAA 58.665 43.478 9.38 2.21 40.99 3.18
1883 2013 4.866327 TTCCCTTATAAACGGGGTCAAT 57.134 40.909 9.38 0.00 40.99 2.57
1884 2014 4.866327 TCCCTTATAAACGGGGTCAATT 57.134 40.909 9.38 0.00 40.99 2.32
1885 2015 5.195848 TCCCTTATAAACGGGGTCAATTT 57.804 39.130 9.38 0.00 40.99 1.82
1886 2016 4.951094 TCCCTTATAAACGGGGTCAATTTG 59.049 41.667 9.38 0.00 40.99 2.32
1887 2017 4.707934 CCCTTATAAACGGGGTCAATTTGT 59.292 41.667 2.39 0.00 36.78 2.83
1888 2018 5.186215 CCCTTATAAACGGGGTCAATTTGTT 59.814 40.000 2.39 0.00 36.78 2.83
1889 2019 6.295405 CCCTTATAAACGGGGTCAATTTGTTT 60.295 38.462 2.39 0.00 36.78 2.83
1890 2020 7.093858 CCCTTATAAACGGGGTCAATTTGTTTA 60.094 37.037 2.39 0.00 38.79 2.01
1891 2021 7.971722 CCTTATAAACGGGGTCAATTTGTTTAG 59.028 37.037 0.00 0.00 38.11 1.85
1892 2022 4.594123 AAACGGGGTCAATTTGTTTAGG 57.406 40.909 0.00 0.00 31.49 2.69
1893 2023 3.232720 ACGGGGTCAATTTGTTTAGGT 57.767 42.857 0.00 0.00 0.00 3.08
1894 2024 3.568443 ACGGGGTCAATTTGTTTAGGTT 58.432 40.909 0.00 0.00 0.00 3.50
1895 2025 3.962063 ACGGGGTCAATTTGTTTAGGTTT 59.038 39.130 0.00 0.00 0.00 3.27
1896 2026 4.406326 ACGGGGTCAATTTGTTTAGGTTTT 59.594 37.500 0.00 0.00 0.00 2.43
1897 2027 4.986034 CGGGGTCAATTTGTTTAGGTTTTC 59.014 41.667 0.00 0.00 0.00 2.29
1898 2028 4.986034 GGGGTCAATTTGTTTAGGTTTTCG 59.014 41.667 0.00 0.00 0.00 3.46
1899 2029 5.221283 GGGGTCAATTTGTTTAGGTTTTCGA 60.221 40.000 0.00 0.00 0.00 3.71
1900 2030 6.452242 GGGTCAATTTGTTTAGGTTTTCGAT 58.548 36.000 0.00 0.00 0.00 3.59
1901 2031 6.584942 GGGTCAATTTGTTTAGGTTTTCGATC 59.415 38.462 0.00 0.00 0.00 3.69
1902 2032 6.584942 GGTCAATTTGTTTAGGTTTTCGATCC 59.415 38.462 0.00 0.00 0.00 3.36
1903 2033 7.368059 GTCAATTTGTTTAGGTTTTCGATCCT 58.632 34.615 8.86 8.86 37.80 3.24
1904 2034 7.326063 GTCAATTTGTTTAGGTTTTCGATCCTG 59.674 37.037 12.54 0.00 35.51 3.86
1905 2035 6.894339 ATTTGTTTAGGTTTTCGATCCTGT 57.106 33.333 12.54 0.00 35.51 4.00
1906 2036 6.702716 TTTGTTTAGGTTTTCGATCCTGTT 57.297 33.333 12.54 0.00 35.51 3.16
1907 2037 6.702716 TTGTTTAGGTTTTCGATCCTGTTT 57.297 33.333 12.54 0.00 35.51 2.83
1908 2038 6.308371 TGTTTAGGTTTTCGATCCTGTTTC 57.692 37.500 12.54 4.18 35.51 2.78
1909 2039 5.239963 TGTTTAGGTTTTCGATCCTGTTTCC 59.760 40.000 12.54 0.00 35.51 3.13
1910 2040 2.791655 AGGTTTTCGATCCTGTTTCCC 58.208 47.619 3.98 0.00 32.29 3.97
1911 2041 2.375509 AGGTTTTCGATCCTGTTTCCCT 59.624 45.455 3.98 0.00 32.29 4.20
1912 2042 3.154710 GGTTTTCGATCCTGTTTCCCTT 58.845 45.455 0.00 0.00 0.00 3.95
1913 2043 4.042435 AGGTTTTCGATCCTGTTTCCCTTA 59.958 41.667 3.98 0.00 32.29 2.69
1914 2044 4.948004 GGTTTTCGATCCTGTTTCCCTTAT 59.052 41.667 0.00 0.00 0.00 1.73
1915 2045 6.069847 AGGTTTTCGATCCTGTTTCCCTTATA 60.070 38.462 3.98 0.00 32.29 0.98
1916 2046 6.600427 GGTTTTCGATCCTGTTTCCCTTATAA 59.400 38.462 0.00 0.00 0.00 0.98
1917 2047 7.121611 GGTTTTCGATCCTGTTTCCCTTATAAA 59.878 37.037 0.00 0.00 0.00 1.40
1918 2048 7.619964 TTTCGATCCTGTTTCCCTTATAAAC 57.380 36.000 0.00 0.00 37.35 2.01
1919 2049 5.353938 TCGATCCTGTTTCCCTTATAAACG 58.646 41.667 0.00 0.00 39.23 3.60
1920 2050 4.510340 CGATCCTGTTTCCCTTATAAACGG 59.490 45.833 0.00 0.00 41.06 4.44
1927 2057 3.764237 TCCCTTATAAACGGGATCAGC 57.236 47.619 8.15 0.00 44.42 4.26
1928 2058 2.370849 TCCCTTATAAACGGGATCAGCC 59.629 50.000 8.15 0.00 44.42 4.85
1929 2059 2.105821 CCCTTATAAACGGGATCAGCCA 59.894 50.000 4.09 0.00 43.44 4.75
1930 2060 3.434453 CCCTTATAAACGGGATCAGCCAA 60.434 47.826 4.09 0.00 43.44 4.52
1931 2061 4.204012 CCTTATAAACGGGATCAGCCAAA 58.796 43.478 0.00 0.00 38.95 3.28
1932 2062 4.275936 CCTTATAAACGGGATCAGCCAAAG 59.724 45.833 0.00 0.00 38.95 2.77
1933 2063 2.871096 TAAACGGGATCAGCCAAAGT 57.129 45.000 0.00 0.00 38.95 2.66
1934 2064 1.995376 AAACGGGATCAGCCAAAGTT 58.005 45.000 0.00 0.00 38.95 2.66
1935 2065 2.871096 AACGGGATCAGCCAAAGTTA 57.129 45.000 0.00 0.00 38.95 2.24
1936 2066 2.871096 ACGGGATCAGCCAAAGTTAA 57.129 45.000 0.00 0.00 38.95 2.01
1937 2067 2.711542 ACGGGATCAGCCAAAGTTAAG 58.288 47.619 0.00 0.00 38.95 1.85
1938 2068 2.017049 CGGGATCAGCCAAAGTTAAGG 58.983 52.381 0.00 0.00 38.95 2.69
1939 2069 2.379005 GGGATCAGCCAAAGTTAAGGG 58.621 52.381 0.00 0.00 38.95 3.95
1940 2070 2.379005 GGATCAGCCAAAGTTAAGGGG 58.621 52.381 0.00 0.00 36.34 4.79
1941 2071 2.291605 GGATCAGCCAAAGTTAAGGGGT 60.292 50.000 0.00 0.00 36.34 4.95
1944 2074 2.287977 AGCCAAAGTTAAGGGGTGAC 57.712 50.000 0.00 0.00 0.00 3.67
1945 2075 1.780919 AGCCAAAGTTAAGGGGTGACT 59.219 47.619 0.00 0.00 0.00 3.41
1946 2076 2.160205 GCCAAAGTTAAGGGGTGACTC 58.840 52.381 0.00 0.00 0.00 3.36
1953 2083 4.339335 AGGGGTGACTCTTGGCTT 57.661 55.556 0.00 0.00 38.96 4.35
1954 2084 2.556849 AGGGGTGACTCTTGGCTTT 58.443 52.632 0.00 0.00 38.96 3.51
1955 2085 0.111253 AGGGGTGACTCTTGGCTTTG 59.889 55.000 0.00 0.00 38.96 2.77
1956 2086 0.895559 GGGGTGACTCTTGGCTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
1957 2087 1.527433 GGGTGACTCTTGGCTTTGGC 61.527 60.000 0.00 0.00 37.82 4.52
1958 2088 0.823356 GGTGACTCTTGGCTTTGGCA 60.823 55.000 0.00 0.00 40.87 4.92
1959 2089 0.595095 GTGACTCTTGGCTTTGGCAG 59.405 55.000 0.00 0.00 39.75 4.85
1985 2115 6.713762 TTTTGAGCAATATATTCAGGTGGG 57.286 37.500 0.00 0.00 0.00 4.61
1986 2116 4.371624 TGAGCAATATATTCAGGTGGGG 57.628 45.455 0.00 0.00 0.00 4.96
1987 2117 3.980022 TGAGCAATATATTCAGGTGGGGA 59.020 43.478 0.00 0.00 0.00 4.81
1988 2118 4.603171 TGAGCAATATATTCAGGTGGGGAT 59.397 41.667 0.00 0.00 0.00 3.85
1989 2119 5.184892 AGCAATATATTCAGGTGGGGATC 57.815 43.478 0.00 0.00 0.00 3.36
1990 2120 4.018050 AGCAATATATTCAGGTGGGGATCC 60.018 45.833 1.92 1.92 0.00 3.36
1991 2121 4.018050 GCAATATATTCAGGTGGGGATCCT 60.018 45.833 12.58 0.00 35.45 3.24
1992 2122 5.749462 CAATATATTCAGGTGGGGATCCTC 58.251 45.833 12.58 8.60 32.37 3.71
1993 2123 3.663298 ATATTCAGGTGGGGATCCTCT 57.337 47.619 14.22 2.52 32.37 3.69
1994 2124 1.813102 ATTCAGGTGGGGATCCTCTC 58.187 55.000 14.22 9.47 32.37 3.20
1995 2125 0.326618 TTCAGGTGGGGATCCTCTCC 60.327 60.000 23.14 23.14 44.11 3.71
2013 2143 3.943691 CCCCCGGTGACCGTTCAA 61.944 66.667 23.73 0.00 46.80 2.69
2014 2144 2.111460 CCCCGGTGACCGTTCAAA 59.889 61.111 23.73 0.00 46.80 2.69
2015 2145 1.526455 CCCCGGTGACCGTTCAAAA 60.526 57.895 23.73 0.00 46.80 2.44
2016 2146 1.102222 CCCCGGTGACCGTTCAAAAA 61.102 55.000 23.73 0.00 46.80 1.94
2379 2560 9.595823 GTTGTATACACATAGTATTTGGTCAGT 57.404 33.333 4.68 0.00 40.52 3.41
2774 2963 1.950216 GCTTAGCTGCCCATTTCTACC 59.050 52.381 0.00 0.00 0.00 3.18
2800 2989 6.343716 TGGTGATTGTTATGCTTGATGTTT 57.656 33.333 0.00 0.00 0.00 2.83
3159 3355 5.523916 GTGAGTCTCTAGTAGCAGAAGAGAG 59.476 48.000 0.65 3.18 44.76 3.20
3474 3733 1.915489 TCTATTCTTCCTGGCTGCCAA 59.085 47.619 23.51 5.80 30.80 4.52
3595 3854 1.925847 CTTGATTGCTCGCTCTCACTC 59.074 52.381 0.00 0.00 0.00 3.51
3596 3855 1.180907 TGATTGCTCGCTCTCACTCT 58.819 50.000 0.00 0.00 0.00 3.24
3597 3856 1.135170 TGATTGCTCGCTCTCACTCTG 60.135 52.381 0.00 0.00 0.00 3.35
3598 3857 0.459934 ATTGCTCGCTCTCACTCTGC 60.460 55.000 0.00 0.00 0.00 4.26
3599 3858 2.202730 GCTCGCTCTCACTCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
3600 3859 2.101965 CTCGCTCTCACTCTGCCG 59.898 66.667 0.00 0.00 0.00 5.69
3601 3860 4.121669 TCGCTCTCACTCTGCCGC 62.122 66.667 0.00 0.00 0.00 6.53
3602 3861 4.127040 CGCTCTCACTCTGCCGCT 62.127 66.667 0.00 0.00 0.00 5.52
3603 3862 2.508887 GCTCTCACTCTGCCGCTG 60.509 66.667 0.00 0.00 0.00 5.18
3604 3863 2.508887 CTCTCACTCTGCCGCTGC 60.509 66.667 0.00 0.00 38.26 5.25
3613 3872 3.720601 TGCCGCTGCATCCCTTCT 61.721 61.111 0.00 0.00 44.23 2.85
3614 3873 2.439156 GCCGCTGCATCCCTTCTT 60.439 61.111 0.00 0.00 37.47 2.52
3615 3874 2.048603 GCCGCTGCATCCCTTCTTT 61.049 57.895 0.00 0.00 37.47 2.52
3616 3875 1.997928 GCCGCTGCATCCCTTCTTTC 61.998 60.000 0.00 0.00 37.47 2.62
3617 3876 0.393537 CCGCTGCATCCCTTCTTTCT 60.394 55.000 0.00 0.00 0.00 2.52
3618 3877 1.457346 CGCTGCATCCCTTCTTTCTT 58.543 50.000 0.00 0.00 0.00 2.52
3619 3878 1.131883 CGCTGCATCCCTTCTTTCTTG 59.868 52.381 0.00 0.00 0.00 3.02
3620 3879 1.475682 GCTGCATCCCTTCTTTCTTGG 59.524 52.381 0.00 0.00 0.00 3.61
3621 3880 2.800250 CTGCATCCCTTCTTTCTTGGT 58.200 47.619 0.00 0.00 0.00 3.67
3622 3881 3.160269 CTGCATCCCTTCTTTCTTGGTT 58.840 45.455 0.00 0.00 0.00 3.67
3623 3882 3.157087 TGCATCCCTTCTTTCTTGGTTC 58.843 45.455 0.00 0.00 0.00 3.62
3624 3883 2.493675 GCATCCCTTCTTTCTTGGTTCC 59.506 50.000 0.00 0.00 0.00 3.62
3625 3884 3.815757 GCATCCCTTCTTTCTTGGTTCCT 60.816 47.826 0.00 0.00 0.00 3.36
3626 3885 3.790089 TCCCTTCTTTCTTGGTTCCTC 57.210 47.619 0.00 0.00 0.00 3.71
3627 3886 3.327439 TCCCTTCTTTCTTGGTTCCTCT 58.673 45.455 0.00 0.00 0.00 3.69
3628 3887 4.499472 TCCCTTCTTTCTTGGTTCCTCTA 58.501 43.478 0.00 0.00 0.00 2.43
3629 3888 5.101529 TCCCTTCTTTCTTGGTTCCTCTAT 58.898 41.667 0.00 0.00 0.00 1.98
3630 3889 5.045578 TCCCTTCTTTCTTGGTTCCTCTATG 60.046 44.000 0.00 0.00 0.00 2.23
3631 3890 5.189180 CCTTCTTTCTTGGTTCCTCTATGG 58.811 45.833 0.00 0.00 37.10 2.74
3632 3891 5.045578 CCTTCTTTCTTGGTTCCTCTATGGA 60.046 44.000 0.00 0.00 44.51 3.41
3633 3892 5.422214 TCTTTCTTGGTTCCTCTATGGAC 57.578 43.478 0.00 0.00 46.14 4.02
3634 3893 4.844085 TCTTTCTTGGTTCCTCTATGGACA 59.156 41.667 0.00 0.00 46.14 4.02
3635 3894 5.488919 TCTTTCTTGGTTCCTCTATGGACAT 59.511 40.000 0.00 0.00 46.14 3.06
3636 3895 4.760530 TCTTGGTTCCTCTATGGACATG 57.239 45.455 0.00 0.00 46.14 3.21
3637 3896 4.104086 TCTTGGTTCCTCTATGGACATGT 58.896 43.478 0.00 0.00 46.14 3.21
3638 3897 3.912496 TGGTTCCTCTATGGACATGTG 57.088 47.619 1.15 0.00 46.14 3.21
3639 3898 3.181329 TGGTTCCTCTATGGACATGTGT 58.819 45.455 1.15 0.00 46.14 3.72
3640 3899 3.587061 TGGTTCCTCTATGGACATGTGTT 59.413 43.478 1.15 0.00 46.14 3.32
3641 3900 4.192317 GGTTCCTCTATGGACATGTGTTC 58.808 47.826 1.15 0.00 46.14 3.18
3642 3901 4.080863 GGTTCCTCTATGGACATGTGTTCT 60.081 45.833 1.15 0.00 46.14 3.01
3643 3902 5.491982 GTTCCTCTATGGACATGTGTTCTT 58.508 41.667 1.15 0.00 46.14 2.52
3644 3903 5.089970 TCCTCTATGGACATGTGTTCTTG 57.910 43.478 1.15 0.00 40.56 3.02
3645 3904 4.777366 TCCTCTATGGACATGTGTTCTTGA 59.223 41.667 1.15 0.00 40.56 3.02
3646 3905 5.426509 TCCTCTATGGACATGTGTTCTTGAT 59.573 40.000 1.15 0.00 40.56 2.57
3647 3906 6.070021 TCCTCTATGGACATGTGTTCTTGATT 60.070 38.462 1.15 0.00 40.56 2.57
3648 3907 6.037940 CCTCTATGGACATGTGTTCTTGATTG 59.962 42.308 1.15 0.00 38.35 2.67
3649 3908 3.921119 TGGACATGTGTTCTTGATTGC 57.079 42.857 1.15 0.00 0.00 3.56
3651 3910 3.503363 TGGACATGTGTTCTTGATTGCTC 59.497 43.478 1.15 0.00 0.00 4.26
3655 3914 1.800586 TGTGTTCTTGATTGCTCGCTC 59.199 47.619 0.00 0.00 0.00 5.03
3658 3917 2.289010 TGTTCTTGATTGCTCGCTCTCA 60.289 45.455 0.00 0.00 0.00 3.27
3713 3973 4.002982 TCTATGGACATGTGTTCTTGTGC 58.997 43.478 1.15 0.00 39.31 4.57
3808 4070 2.483714 CCTCCAAACACGGATGATCGAT 60.484 50.000 0.00 0.00 33.56 3.59
3973 4247 5.700402 AAGTGCACATTTATACTCCCTCT 57.300 39.130 21.04 0.00 0.00 3.69
4061 4343 0.036732 AGAGTCCGCATTTTGCTCCA 59.963 50.000 0.00 0.00 42.25 3.86
4071 4353 4.319766 CGCATTTTGCTCCATATGTAGTCC 60.320 45.833 1.24 0.00 42.25 3.85
4096 4378 7.065803 CCGCATTGGAATCTCTAAAAAGACTTA 59.934 37.037 0.00 0.00 42.00 2.24
4366 4661 9.832445 TTACTTGGAAGAACCTATATAGCTTTG 57.168 33.333 4.04 0.00 39.86 2.77
4764 5065 1.327764 GAAGAGGTAAGCCATTTCGCG 59.672 52.381 0.00 0.00 37.19 5.87
4893 5197 0.729690 GAATCTCAAAGCTCGGTGGC 59.270 55.000 0.00 0.00 0.00 5.01
4972 5278 2.943690 GAGAAGACACTGCATGCATGAT 59.056 45.455 30.64 11.66 0.00 2.45
4977 5283 3.119602 AGACACTGCATGCATGATTGTTC 60.120 43.478 30.64 18.13 0.00 3.18
5027 5339 8.994429 TTTTTCTTATGTTTTCACAGCTTGAA 57.006 26.923 7.09 7.09 42.83 2.69
5038 5350 5.050644 TCACAGCTTGAACTGCATAATTG 57.949 39.130 0.00 0.00 41.60 2.32
5045 5357 8.400947 CAGCTTGAACTGCATAATTGTACTAAT 58.599 33.333 0.00 0.00 0.00 1.73
5099 5411 4.974645 AGTTTTGGTCTGTGAGTATCCA 57.025 40.909 0.00 0.00 0.00 3.41
5115 5427 9.155975 GTGAGTATCCATATATGAATTGTGTCC 57.844 37.037 14.54 0.00 0.00 4.02
5123 5435 8.150296 CCATATATGAATTGTGTCCTGTGACTA 58.850 37.037 14.54 0.00 42.28 2.59
5176 5505 2.256461 GCTGAAACTGCCGGCTTG 59.744 61.111 29.70 22.14 33.33 4.01
5192 5521 1.734465 GCTTGGCTGCTTACTGTGTAG 59.266 52.381 0.00 0.00 0.00 2.74
5195 5524 2.766313 TGGCTGCTTACTGTGTAGTTG 58.234 47.619 0.00 0.00 38.36 3.16
5200 5529 3.073678 TGCTTACTGTGTAGTTGCATGG 58.926 45.455 0.00 0.00 38.95 3.66
5204 5533 2.229792 ACTGTGTAGTTGCATGGGTTG 58.770 47.619 0.00 0.00 31.66 3.77
5220 5551 2.895404 GGGTTGATCATCCATGGGATTG 59.105 50.000 21.64 7.87 39.79 2.67
5253 5594 6.284459 ACTGCTACCTTGAAGAACTATATGC 58.716 40.000 0.00 0.00 0.00 3.14
5262 5603 9.593134 CCTTGAAGAACTATATGCCTGTATATC 57.407 37.037 0.00 0.00 0.00 1.63
5338 5728 7.285401 ACATAAACAAGAAGACAGGAAACACAT 59.715 33.333 0.00 0.00 0.00 3.21
5344 5734 2.775890 AGACAGGAAACACATGAGCAG 58.224 47.619 0.00 0.00 34.19 4.24
5376 5771 9.911788 ATATGTTTCATTCAACTGATCCTAAGT 57.088 29.630 0.00 0.00 0.00 2.24
5389 5784 6.992715 ACTGATCCTAAGTGTGTAATAATGCC 59.007 38.462 0.00 0.00 0.00 4.40
5393 5788 5.104859 TCCTAAGTGTGTAATAATGCCCGAA 60.105 40.000 0.00 0.00 0.00 4.30
5420 5815 7.965107 GGAAAAGATTCACAGAACACACATATC 59.035 37.037 0.00 0.00 37.29 1.63
5425 5820 6.785488 TTCACAGAACACACATATCTTGTC 57.215 37.500 0.00 0.00 36.00 3.18
5492 5889 8.142994 TGTAAAAACTGAGAGCACTTAAAGAG 57.857 34.615 0.00 0.00 0.00 2.85
5493 5890 7.985184 TGTAAAAACTGAGAGCACTTAAAGAGA 59.015 33.333 0.00 0.00 0.00 3.10
5565 5963 6.208599 TGGAAATCAGTCCCAGAAAACATAAC 59.791 38.462 0.00 0.00 36.80 1.89
5572 5990 4.583073 GTCCCAGAAAACATAACCACAAGT 59.417 41.667 0.00 0.00 0.00 3.16
5573 5991 4.825085 TCCCAGAAAACATAACCACAAGTC 59.175 41.667 0.00 0.00 0.00 3.01
5581 5999 6.877611 AACATAACCACAAGTCGAGATTTT 57.122 33.333 0.00 0.00 0.00 1.82
5606 6024 6.451292 TGTAGGTCCTTTTGGTTGGTAATA 57.549 37.500 0.00 0.00 41.38 0.98
5607 6025 6.850234 TGTAGGTCCTTTTGGTTGGTAATAA 58.150 36.000 0.00 0.00 41.38 1.40
5608 6026 7.471890 TGTAGGTCCTTTTGGTTGGTAATAAT 58.528 34.615 0.00 0.00 41.38 1.28
5609 6027 7.612633 TGTAGGTCCTTTTGGTTGGTAATAATC 59.387 37.037 0.00 0.00 41.38 1.75
5610 6028 5.955959 AGGTCCTTTTGGTTGGTAATAATCC 59.044 40.000 0.00 0.00 41.38 3.01
5648 6066 4.383552 CCGTCCTTCCTTCTCAATCTTCAT 60.384 45.833 0.00 0.00 0.00 2.57
5715 6133 7.814642 AGAAGTTAGAATGCATTTCAGAACAG 58.185 34.615 14.33 0.00 36.02 3.16
5732 6150 3.374220 ACAGGTTGCACAATGACATTG 57.626 42.857 23.62 23.62 45.59 2.82
5733 6151 2.957680 ACAGGTTGCACAATGACATTGA 59.042 40.909 30.23 9.27 42.83 2.57
5753 6171 6.762702 TTGAATGCAGCAAATATCAGAGAA 57.237 33.333 0.00 0.00 0.00 2.87
5759 6177 6.927416 TGCAGCAAATATCAGAGAACAAAAT 58.073 32.000 0.00 0.00 0.00 1.82
5773 6201 7.584123 CAGAGAACAAAATGACTTAGAAACACG 59.416 37.037 0.00 0.00 0.00 4.49
5783 6211 2.526304 TAGAAACACGAGTTGCTGCT 57.474 45.000 15.70 6.27 43.63 4.24
5786 6214 2.378945 AAACACGAGTTGCTGCTGCG 62.379 55.000 11.21 1.97 43.34 5.18
5797 6225 0.931662 GCTGCTGCGTCAGTTTTGTG 60.932 55.000 0.00 0.00 36.49 3.33
5801 6229 2.032117 TGCTGCGTCAGTTTTGTGTATG 60.032 45.455 8.32 0.00 33.43 2.39
5803 6231 3.185594 GCTGCGTCAGTTTTGTGTATGTA 59.814 43.478 8.32 0.00 33.43 2.29
5804 6232 4.698276 CTGCGTCAGTTTTGTGTATGTAC 58.302 43.478 0.00 0.00 0.00 2.90
5805 6233 3.495377 TGCGTCAGTTTTGTGTATGTACC 59.505 43.478 0.00 0.00 0.00 3.34
5806 6234 3.495377 GCGTCAGTTTTGTGTATGTACCA 59.505 43.478 0.00 0.00 0.00 3.25
5807 6235 4.024725 GCGTCAGTTTTGTGTATGTACCAA 60.025 41.667 0.00 0.00 0.00 3.67
5844 6280 3.669939 AAGCCCACAACTATTGCCTAT 57.330 42.857 0.00 0.00 0.00 2.57
5853 6289 6.998074 CCACAACTATTGCCTATAATTCCTCA 59.002 38.462 0.00 0.00 0.00 3.86
5907 6344 3.615592 GCTGCAATCATTTCCTTTCAGCA 60.616 43.478 6.08 0.00 43.49 4.41
5937 6374 8.812513 ATGAATGATTTACTGAACCAGATCAA 57.187 30.769 0.45 0.00 35.18 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.012508 AGTGATGGTTCTAGAATCTTCCCAAA 60.013 38.462 22.34 10.01 0.00 3.28
1 2 5.488919 AGTGATGGTTCTAGAATCTTCCCAA 59.511 40.000 22.34 7.36 0.00 4.12
2 3 5.032846 AGTGATGGTTCTAGAATCTTCCCA 58.967 41.667 22.34 17.82 0.00 4.37
3 4 5.129485 TCAGTGATGGTTCTAGAATCTTCCC 59.871 44.000 22.34 14.73 0.00 3.97
4 5 6.227298 TCAGTGATGGTTCTAGAATCTTCC 57.773 41.667 22.34 13.86 0.00 3.46
5 6 6.536941 GGTTCAGTGATGGTTCTAGAATCTTC 59.463 42.308 19.79 19.79 0.00 2.87
6 7 6.410540 GGTTCAGTGATGGTTCTAGAATCTT 58.589 40.000 16.56 10.40 0.00 2.40
7 8 5.394663 CGGTTCAGTGATGGTTCTAGAATCT 60.395 44.000 16.56 2.65 0.00 2.40
8 9 4.806247 CGGTTCAGTGATGGTTCTAGAATC 59.194 45.833 8.75 8.83 0.00 2.52
9 10 4.383118 CCGGTTCAGTGATGGTTCTAGAAT 60.383 45.833 8.75 0.00 0.00 2.40
10 11 3.056107 CCGGTTCAGTGATGGTTCTAGAA 60.056 47.826 0.00 0.00 0.00 2.10
11 12 2.496070 CCGGTTCAGTGATGGTTCTAGA 59.504 50.000 0.00 0.00 0.00 2.43
167 178 5.892348 ACATGGTTCCCAGACTAAGAAATT 58.108 37.500 0.00 0.00 36.75 1.82
176 187 4.321974 GGATTCAAAACATGGTTCCCAGAC 60.322 45.833 0.00 0.00 36.75 3.51
179 190 3.831911 GAGGATTCAAAACATGGTTCCCA 59.168 43.478 0.00 0.00 38.19 4.37
216 227 8.143193 TCACTGATGCAAAGAATGTTAACAAAT 58.857 29.630 13.23 4.60 0.00 2.32
220 231 6.917477 TGTTCACTGATGCAAAGAATGTTAAC 59.083 34.615 6.76 0.00 0.00 2.01
236 248 4.878971 TCGGTTCAGAAAAATGTTCACTGA 59.121 37.500 0.00 0.00 36.11 3.41
244 256 7.642071 AAATGTTCATCGGTTCAGAAAAATG 57.358 32.000 0.00 0.00 0.00 2.32
245 257 8.661352 AAAAATGTTCATCGGTTCAGAAAAAT 57.339 26.923 0.00 0.00 0.00 1.82
414 427 6.543100 ACAGGTTCATTAACTCCAAAAACGTA 59.457 34.615 0.00 0.00 35.81 3.57
445 458 9.265862 TCCTCCAACCAAAATATGTTTGAATAT 57.734 29.630 10.22 0.00 33.56 1.28
446 459 8.657387 TCCTCCAACCAAAATATGTTTGAATA 57.343 30.769 10.22 0.00 33.56 1.75
447 460 7.552050 TCCTCCAACCAAAATATGTTTGAAT 57.448 32.000 10.22 0.00 33.56 2.57
448 461 6.985653 TCCTCCAACCAAAATATGTTTGAA 57.014 33.333 10.22 0.00 33.56 2.69
449 462 6.723515 TGATCCTCCAACCAAAATATGTTTGA 59.276 34.615 10.22 0.00 33.56 2.69
541 554 9.771534 TCACGAATTTTCAAAAATTAGGGATTT 57.228 25.926 16.90 0.93 43.58 2.17
683 699 7.826260 TGGTTCTTGTTTTTCTTCATTGTTC 57.174 32.000 0.00 0.00 0.00 3.18
689 705 6.537453 TCCAATGGTTCTTGTTTTTCTTCA 57.463 33.333 0.00 0.00 0.00 3.02
743 759 1.315257 AAGCTTTATGTGGGCCGCAG 61.315 55.000 25.69 12.63 0.00 5.18
744 760 1.304052 AAGCTTTATGTGGGCCGCA 60.304 52.632 23.95 23.95 0.00 5.69
746 762 1.017387 GAGAAGCTTTATGTGGGCCG 58.983 55.000 0.00 0.00 0.00 6.13
766 782 2.350498 CGTTTTCATACGGGCTAACTGG 59.650 50.000 0.00 0.00 37.86 4.00
781 797 1.401530 GGCGCAAAAGTACCGTTTTC 58.598 50.000 10.83 0.00 0.00 2.29
928 978 2.290577 GGCAGATCACCTCTTCTTGGTT 60.291 50.000 0.00 0.00 35.28 3.67
1078 1129 0.178987 AGGTAGACGATGAGGGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
1112 1163 2.371841 TGATTGATGGGAGATTACGGGG 59.628 50.000 0.00 0.00 0.00 5.73
1142 1228 5.613358 AAAGAACTAAAAGAGGATGCACG 57.387 39.130 0.00 0.00 0.00 5.34
1145 1231 4.695928 ACCGAAAGAACTAAAAGAGGATGC 59.304 41.667 0.00 0.00 0.00 3.91
1368 1486 4.065088 GGCCTGAATCGAATGCAATACTA 58.935 43.478 0.00 0.00 0.00 1.82
1369 1487 2.880890 GGCCTGAATCGAATGCAATACT 59.119 45.455 0.00 0.00 0.00 2.12
1370 1488 2.618241 TGGCCTGAATCGAATGCAATAC 59.382 45.455 3.32 0.00 0.00 1.89
1454 1580 4.012374 GCTTGGAATCTTTCTGGATCACA 58.988 43.478 0.00 0.00 0.00 3.58
1557 1683 2.270205 CTGGGCTGCGAACCTCAT 59.730 61.111 0.00 0.00 0.00 2.90
1570 1696 4.524328 ACTGAATTTTCTGCTTAACCTGGG 59.476 41.667 0.00 0.00 0.00 4.45
1573 1699 6.241645 AGCTACTGAATTTTCTGCTTAACCT 58.758 36.000 0.00 0.00 0.00 3.50
1611 1737 5.234752 TGTAAAGTTGCGACATGTGAGTAT 58.765 37.500 1.15 0.00 0.00 2.12
1661 1787 0.541392 CATGGTCCAGGTCCGAATCA 59.459 55.000 0.00 0.00 0.00 2.57
1841 1971 3.880591 GGGCCGAACCGTAGAAAC 58.119 61.111 0.00 0.00 40.62 2.78
1865 1995 5.907866 ACAAATTGACCCCGTTTATAAGG 57.092 39.130 0.00 0.00 0.00 2.69
1866 1996 7.971722 CCTAAACAAATTGACCCCGTTTATAAG 59.028 37.037 0.00 0.00 33.08 1.73
1867 1997 7.450944 ACCTAAACAAATTGACCCCGTTTATAA 59.549 33.333 0.00 0.00 33.08 0.98
1868 1998 6.947158 ACCTAAACAAATTGACCCCGTTTATA 59.053 34.615 0.00 0.00 33.08 0.98
1869 1999 5.776208 ACCTAAACAAATTGACCCCGTTTAT 59.224 36.000 0.00 0.00 33.08 1.40
1870 2000 5.139001 ACCTAAACAAATTGACCCCGTTTA 58.861 37.500 0.00 0.00 32.42 2.01
1871 2001 3.962063 ACCTAAACAAATTGACCCCGTTT 59.038 39.130 0.00 0.00 34.40 3.60
1872 2002 3.568443 ACCTAAACAAATTGACCCCGTT 58.432 40.909 0.00 0.00 0.00 4.44
1873 2003 3.232720 ACCTAAACAAATTGACCCCGT 57.767 42.857 0.00 0.00 0.00 5.28
1874 2004 4.594123 AAACCTAAACAAATTGACCCCG 57.406 40.909 0.00 0.00 0.00 5.73
1875 2005 4.986034 CGAAAACCTAAACAAATTGACCCC 59.014 41.667 0.00 0.00 0.00 4.95
1876 2006 5.834169 TCGAAAACCTAAACAAATTGACCC 58.166 37.500 0.00 0.00 0.00 4.46
1877 2007 6.584942 GGATCGAAAACCTAAACAAATTGACC 59.415 38.462 0.00 0.00 0.00 4.02
1878 2008 7.326063 CAGGATCGAAAACCTAAACAAATTGAC 59.674 37.037 0.00 0.00 34.87 3.18
1879 2009 7.013846 ACAGGATCGAAAACCTAAACAAATTGA 59.986 33.333 0.00 0.00 34.87 2.57
1880 2010 7.145323 ACAGGATCGAAAACCTAAACAAATTG 58.855 34.615 8.46 0.00 34.87 2.32
1881 2011 7.284919 ACAGGATCGAAAACCTAAACAAATT 57.715 32.000 8.46 0.00 34.87 1.82
1882 2012 6.894339 ACAGGATCGAAAACCTAAACAAAT 57.106 33.333 8.46 0.00 34.87 2.32
1883 2013 6.702716 AACAGGATCGAAAACCTAAACAAA 57.297 33.333 8.46 0.00 34.87 2.83
1884 2014 6.238814 GGAAACAGGATCGAAAACCTAAACAA 60.239 38.462 8.46 0.00 34.87 2.83
1885 2015 5.239963 GGAAACAGGATCGAAAACCTAAACA 59.760 40.000 8.46 0.00 34.87 2.83
1886 2016 5.335426 GGGAAACAGGATCGAAAACCTAAAC 60.335 44.000 8.46 2.97 34.87 2.01
1887 2017 4.763279 GGGAAACAGGATCGAAAACCTAAA 59.237 41.667 8.46 0.00 34.87 1.85
1888 2018 4.042435 AGGGAAACAGGATCGAAAACCTAA 59.958 41.667 8.46 0.00 34.87 2.69
1889 2019 3.585732 AGGGAAACAGGATCGAAAACCTA 59.414 43.478 8.46 0.00 34.87 3.08
1890 2020 2.375509 AGGGAAACAGGATCGAAAACCT 59.624 45.455 0.00 0.00 36.92 3.50
1891 2021 2.791655 AGGGAAACAGGATCGAAAACC 58.208 47.619 0.00 0.00 0.00 3.27
1892 2022 7.619964 TTATAAGGGAAACAGGATCGAAAAC 57.380 36.000 0.00 0.00 0.00 2.43
1893 2023 7.148373 CGTTTATAAGGGAAACAGGATCGAAAA 60.148 37.037 0.00 0.00 36.74 2.29
1894 2024 6.314400 CGTTTATAAGGGAAACAGGATCGAAA 59.686 38.462 0.00 0.00 36.74 3.46
1895 2025 5.813672 CGTTTATAAGGGAAACAGGATCGAA 59.186 40.000 0.00 0.00 36.74 3.71
1896 2026 5.353938 CGTTTATAAGGGAAACAGGATCGA 58.646 41.667 0.00 0.00 36.74 3.59
1897 2027 4.510340 CCGTTTATAAGGGAAACAGGATCG 59.490 45.833 0.00 0.00 38.71 3.69
1909 2039 3.485463 TGGCTGATCCCGTTTATAAGG 57.515 47.619 0.00 0.00 0.00 2.69
1910 2040 4.881850 ACTTTGGCTGATCCCGTTTATAAG 59.118 41.667 0.00 0.00 0.00 1.73
1911 2041 4.850680 ACTTTGGCTGATCCCGTTTATAA 58.149 39.130 0.00 0.00 0.00 0.98
1912 2042 4.497291 ACTTTGGCTGATCCCGTTTATA 57.503 40.909 0.00 0.00 0.00 0.98
1913 2043 3.366052 ACTTTGGCTGATCCCGTTTAT 57.634 42.857 0.00 0.00 0.00 1.40
1914 2044 2.871096 ACTTTGGCTGATCCCGTTTA 57.129 45.000 0.00 0.00 0.00 2.01
1915 2045 1.995376 AACTTTGGCTGATCCCGTTT 58.005 45.000 0.00 0.00 0.00 3.60
1916 2046 2.871096 TAACTTTGGCTGATCCCGTT 57.129 45.000 0.00 0.00 0.00 4.44
1917 2047 2.618045 CCTTAACTTTGGCTGATCCCGT 60.618 50.000 0.00 0.00 0.00 5.28
1918 2048 2.017049 CCTTAACTTTGGCTGATCCCG 58.983 52.381 0.00 0.00 0.00 5.14
1919 2049 2.379005 CCCTTAACTTTGGCTGATCCC 58.621 52.381 0.00 0.00 0.00 3.85
1920 2050 2.291605 ACCCCTTAACTTTGGCTGATCC 60.292 50.000 0.00 0.00 0.00 3.36
1921 2051 2.755103 CACCCCTTAACTTTGGCTGATC 59.245 50.000 0.00 0.00 0.00 2.92
1922 2052 2.378547 TCACCCCTTAACTTTGGCTGAT 59.621 45.455 0.00 0.00 0.00 2.90
1923 2053 1.777878 TCACCCCTTAACTTTGGCTGA 59.222 47.619 0.00 0.00 0.00 4.26
1924 2054 1.886542 GTCACCCCTTAACTTTGGCTG 59.113 52.381 0.00 0.00 0.00 4.85
1925 2055 1.780919 AGTCACCCCTTAACTTTGGCT 59.219 47.619 0.00 0.00 0.00 4.75
1926 2056 2.160205 GAGTCACCCCTTAACTTTGGC 58.840 52.381 0.00 0.00 0.00 4.52
1927 2057 3.790089 AGAGTCACCCCTTAACTTTGG 57.210 47.619 0.00 0.00 0.00 3.28
1928 2058 3.821033 CCAAGAGTCACCCCTTAACTTTG 59.179 47.826 0.00 0.00 0.00 2.77
1929 2059 3.750922 GCCAAGAGTCACCCCTTAACTTT 60.751 47.826 0.00 0.00 0.00 2.66
1930 2060 2.224793 GCCAAGAGTCACCCCTTAACTT 60.225 50.000 0.00 0.00 0.00 2.66
1931 2061 1.351350 GCCAAGAGTCACCCCTTAACT 59.649 52.381 0.00 0.00 0.00 2.24
1932 2062 1.351350 AGCCAAGAGTCACCCCTTAAC 59.649 52.381 0.00 0.00 0.00 2.01
1933 2063 1.742308 AGCCAAGAGTCACCCCTTAA 58.258 50.000 0.00 0.00 0.00 1.85
1934 2064 1.742308 AAGCCAAGAGTCACCCCTTA 58.258 50.000 0.00 0.00 0.00 2.69
1935 2065 0.853530 AAAGCCAAGAGTCACCCCTT 59.146 50.000 0.00 0.00 0.00 3.95
1936 2066 0.111253 CAAAGCCAAGAGTCACCCCT 59.889 55.000 0.00 0.00 0.00 4.79
1937 2067 0.895559 CCAAAGCCAAGAGTCACCCC 60.896 60.000 0.00 0.00 0.00 4.95
1938 2068 1.527433 GCCAAAGCCAAGAGTCACCC 61.527 60.000 0.00 0.00 0.00 4.61
1939 2069 0.823356 TGCCAAAGCCAAGAGTCACC 60.823 55.000 0.00 0.00 38.69 4.02
1940 2070 0.595095 CTGCCAAAGCCAAGAGTCAC 59.405 55.000 0.00 0.00 38.69 3.67
1941 2071 3.025924 CTGCCAAAGCCAAGAGTCA 57.974 52.632 0.00 0.00 38.69 3.41
1960 2090 7.205297 CCCACCTGAATATATTGCTCAAAAAG 58.795 38.462 1.78 0.00 0.00 2.27
1961 2091 6.098124 CCCCACCTGAATATATTGCTCAAAAA 59.902 38.462 1.78 0.00 0.00 1.94
1962 2092 5.598005 CCCCACCTGAATATATTGCTCAAAA 59.402 40.000 1.78 0.00 0.00 2.44
1963 2093 5.103728 TCCCCACCTGAATATATTGCTCAAA 60.104 40.000 1.78 0.00 0.00 2.69
1964 2094 4.415179 TCCCCACCTGAATATATTGCTCAA 59.585 41.667 1.78 0.00 0.00 3.02
1965 2095 3.980022 TCCCCACCTGAATATATTGCTCA 59.020 43.478 1.78 0.00 0.00 4.26
1966 2096 4.640771 TCCCCACCTGAATATATTGCTC 57.359 45.455 1.78 0.00 0.00 4.26
1967 2097 4.018050 GGATCCCCACCTGAATATATTGCT 60.018 45.833 1.78 0.00 0.00 3.91
1968 2098 4.018050 AGGATCCCCACCTGAATATATTGC 60.018 45.833 8.55 0.00 36.30 3.56
1969 2099 5.490357 AGAGGATCCCCACCTGAATATATTG 59.510 44.000 8.55 0.00 37.93 1.90
1970 2100 5.680327 AGAGGATCCCCACCTGAATATATT 58.320 41.667 8.55 0.00 37.93 1.28
1971 2101 5.284582 GAGAGGATCCCCACCTGAATATAT 58.715 45.833 8.55 0.00 37.93 0.86
1972 2102 4.512942 GGAGAGGATCCCCACCTGAATATA 60.513 50.000 8.55 0.00 43.01 0.86
1973 2103 3.525862 GAGAGGATCCCCACCTGAATAT 58.474 50.000 8.55 0.00 37.93 1.28
1974 2104 2.427889 GGAGAGGATCCCCACCTGAATA 60.428 54.545 8.55 0.00 43.01 1.75
1975 2105 1.697291 GGAGAGGATCCCCACCTGAAT 60.697 57.143 8.55 0.00 43.01 2.57
1976 2106 0.326618 GGAGAGGATCCCCACCTGAA 60.327 60.000 8.55 0.00 43.01 3.02
1977 2107 1.314867 GGAGAGGATCCCCACCTGA 59.685 63.158 8.55 0.00 43.01 3.86
1978 2108 3.978164 GGAGAGGATCCCCACCTG 58.022 66.667 8.55 0.00 43.01 4.00
2023 2153 9.899226 GACAAAATAACAAGAAGCAGAAACTAT 57.101 29.630 0.00 0.00 0.00 2.12
2024 2154 8.067784 CGACAAAATAACAAGAAGCAGAAACTA 58.932 33.333 0.00 0.00 0.00 2.24
2025 2155 6.912591 CGACAAAATAACAAGAAGCAGAAACT 59.087 34.615 0.00 0.00 0.00 2.66
2774 2963 7.268199 ACATCAAGCATAACAATCACCATAG 57.732 36.000 0.00 0.00 0.00 2.23
3010 3203 5.314923 TGATGAAGCTTGGCAAATACTTC 57.685 39.130 21.38 21.38 37.77 3.01
3159 3355 7.865385 TGAAAACAGCCACTGTAATTATGTTTC 59.135 33.333 10.10 6.32 44.62 2.78
3271 3510 1.926108 ATAGGGATGTCTCCTACGCC 58.074 55.000 0.00 0.00 41.74 5.68
3287 3526 7.284716 GGTAATTAAGACCCCCACTGAAAATAG 59.715 40.741 0.00 0.00 0.00 1.73
3291 3530 4.925836 GGTAATTAAGACCCCCACTGAAA 58.074 43.478 0.00 0.00 0.00 2.69
3314 3553 1.199789 TCAGGCAAATTGCTAAGCACG 59.800 47.619 18.04 0.00 44.28 5.34
3357 3600 2.818751 TTTTTGGTCTGTGGAGTGGT 57.181 45.000 0.00 0.00 0.00 4.16
3457 3716 2.242882 AATTGGCAGCCAGGAAGAAT 57.757 45.000 15.50 0.50 33.81 2.40
3474 3733 1.838077 GCACCCTGGTCCTGTACTAAT 59.162 52.381 0.00 0.00 0.00 1.73
3597 3856 1.997928 GAAAGAAGGGATGCAGCGGC 61.998 60.000 0.31 0.31 41.68 6.53
3598 3857 0.393537 AGAAAGAAGGGATGCAGCGG 60.394 55.000 0.00 0.00 0.00 5.52
3599 3858 1.131883 CAAGAAAGAAGGGATGCAGCG 59.868 52.381 0.00 0.00 0.00 5.18
3600 3859 1.475682 CCAAGAAAGAAGGGATGCAGC 59.524 52.381 0.00 0.00 0.00 5.25
3601 3860 2.800250 ACCAAGAAAGAAGGGATGCAG 58.200 47.619 0.00 0.00 0.00 4.41
3602 3861 2.978156 ACCAAGAAAGAAGGGATGCA 57.022 45.000 0.00 0.00 0.00 3.96
3603 3862 2.493675 GGAACCAAGAAAGAAGGGATGC 59.506 50.000 0.00 0.00 0.00 3.91
3604 3863 4.013050 GAGGAACCAAGAAAGAAGGGATG 58.987 47.826 0.00 0.00 0.00 3.51
3605 3864 3.919554 AGAGGAACCAAGAAAGAAGGGAT 59.080 43.478 0.00 0.00 0.00 3.85
3606 3865 3.327439 AGAGGAACCAAGAAAGAAGGGA 58.673 45.455 0.00 0.00 0.00 4.20
3607 3866 3.797559 AGAGGAACCAAGAAAGAAGGG 57.202 47.619 0.00 0.00 0.00 3.95
3608 3867 5.045578 TCCATAGAGGAACCAAGAAAGAAGG 60.046 44.000 0.00 0.00 45.65 3.46
3609 3868 6.054860 TCCATAGAGGAACCAAGAAAGAAG 57.945 41.667 0.00 0.00 45.65 2.85
3622 3881 4.777366 TCAAGAACACATGTCCATAGAGGA 59.223 41.667 0.00 0.00 46.75 3.71
3623 3882 5.089970 TCAAGAACACATGTCCATAGAGG 57.910 43.478 0.00 0.00 39.47 3.69
3624 3883 6.457934 GCAATCAAGAACACATGTCCATAGAG 60.458 42.308 0.00 0.00 0.00 2.43
3625 3884 5.355071 GCAATCAAGAACACATGTCCATAGA 59.645 40.000 0.00 0.00 0.00 1.98
3626 3885 5.356190 AGCAATCAAGAACACATGTCCATAG 59.644 40.000 0.00 0.00 0.00 2.23
3627 3886 5.255687 AGCAATCAAGAACACATGTCCATA 58.744 37.500 0.00 0.00 0.00 2.74
3628 3887 4.084287 AGCAATCAAGAACACATGTCCAT 58.916 39.130 0.00 0.00 0.00 3.41
3629 3888 3.489355 AGCAATCAAGAACACATGTCCA 58.511 40.909 0.00 0.00 0.00 4.02
3630 3889 3.425359 CGAGCAATCAAGAACACATGTCC 60.425 47.826 0.00 0.00 0.00 4.02
3631 3890 3.740590 CGAGCAATCAAGAACACATGTC 58.259 45.455 0.00 0.00 0.00 3.06
3632 3891 2.095567 GCGAGCAATCAAGAACACATGT 60.096 45.455 0.00 0.00 0.00 3.21
3633 3892 2.161012 AGCGAGCAATCAAGAACACATG 59.839 45.455 0.00 0.00 0.00 3.21
3634 3893 2.417933 GAGCGAGCAATCAAGAACACAT 59.582 45.455 0.00 0.00 0.00 3.21
3635 3894 1.800586 GAGCGAGCAATCAAGAACACA 59.199 47.619 0.00 0.00 0.00 3.72
3636 3895 2.072298 AGAGCGAGCAATCAAGAACAC 58.928 47.619 0.00 0.00 0.00 3.32
3637 3896 2.289010 TGAGAGCGAGCAATCAAGAACA 60.289 45.455 0.00 0.00 0.00 3.18
3638 3897 2.093467 GTGAGAGCGAGCAATCAAGAAC 59.907 50.000 0.00 0.00 0.00 3.01
3639 3898 2.028658 AGTGAGAGCGAGCAATCAAGAA 60.029 45.455 0.00 0.00 0.00 2.52
3640 3899 1.547820 AGTGAGAGCGAGCAATCAAGA 59.452 47.619 0.00 0.00 0.00 3.02
3641 3900 1.925847 GAGTGAGAGCGAGCAATCAAG 59.074 52.381 0.00 0.00 0.00 3.02
3642 3901 1.547820 AGAGTGAGAGCGAGCAATCAA 59.452 47.619 0.00 0.00 32.05 2.57
3643 3902 1.135170 CAGAGTGAGAGCGAGCAATCA 60.135 52.381 0.00 0.00 32.05 2.57
3644 3903 1.558741 CAGAGTGAGAGCGAGCAATC 58.441 55.000 0.00 0.00 0.00 2.67
3645 3904 0.459934 GCAGAGTGAGAGCGAGCAAT 60.460 55.000 0.00 0.00 0.00 3.56
3646 3905 1.080230 GCAGAGTGAGAGCGAGCAA 60.080 57.895 0.00 0.00 0.00 3.91
3647 3906 2.570706 GCAGAGTGAGAGCGAGCA 59.429 61.111 0.00 0.00 0.00 4.26
3648 3907 2.202730 GGCAGAGTGAGAGCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
3649 3908 2.101965 CGGCAGAGTGAGAGCGAG 59.898 66.667 0.00 0.00 0.00 5.03
3651 3910 4.127040 AGCGGCAGAGTGAGAGCG 62.127 66.667 1.45 0.00 0.00 5.03
3808 4070 1.931841 CAGAACGACGACGAGAGGATA 59.068 52.381 15.32 0.00 42.66 2.59
4029 4303 7.948278 AATGCGGACTCTAAAATATGTCTAC 57.052 36.000 0.00 0.00 0.00 2.59
4049 4323 4.319766 CGGACTACATATGGAGCAAAATGC 60.320 45.833 15.30 0.00 45.46 3.56
4061 4343 5.247110 AGAGATTCCAATGCGGACTACATAT 59.753 40.000 0.00 0.00 46.36 1.78
4071 4353 6.428385 AGTCTTTTTAGAGATTCCAATGCG 57.572 37.500 0.00 0.00 0.00 4.73
4096 4378 6.469782 TTTACTCCCTCCGTTCGTAAATAT 57.530 37.500 0.00 0.00 0.00 1.28
4103 4385 7.958053 ATTTATATTTTACTCCCTCCGTTCG 57.042 36.000 0.00 0.00 0.00 3.95
4299 4585 6.611642 TGGATAGTCAGCTATACCAAACTTCT 59.388 38.462 0.00 0.00 37.66 2.85
4366 4661 5.904941 TGGCCAATGATGAACATGATTTAC 58.095 37.500 0.61 0.00 39.39 2.01
4622 4922 5.602628 GCTTATATAGCCTAGGAAATCGGG 58.397 45.833 14.75 0.00 44.48 5.14
4764 5065 3.993920 ACACAAATGAAAATGGGTGAGC 58.006 40.909 0.00 0.00 30.46 4.26
4893 5197 7.489113 CCTTTCAAATATCCAACAATTTCGGAG 59.511 37.037 0.00 0.00 30.84 4.63
4949 5253 0.318120 TGCATGCAGTGTCTTCTCGA 59.682 50.000 18.46 0.00 0.00 4.04
4963 5267 5.823209 TTGTCCTAGAACAATCATGCATG 57.177 39.130 21.07 21.07 34.31 4.06
4972 5278 7.788026 TCTAACAAGAGTTTGTCCTAGAACAA 58.212 34.615 0.00 0.00 46.54 2.83
4977 5283 6.982852 TCACTCTAACAAGAGTTTGTCCTAG 58.017 40.000 5.33 0.00 46.54 3.02
5115 5427 7.117379 CACTATGCCATGATACATTAGTCACAG 59.883 40.741 0.00 0.00 0.00 3.66
5123 5435 4.828939 CCAACCACTATGCCATGATACATT 59.171 41.667 0.00 0.00 0.00 2.71
5149 5478 0.877071 CAGTTTCAGCGCAACCAGAT 59.123 50.000 11.47 0.00 0.00 2.90
5176 5505 1.464997 GCAACTACACAGTAAGCAGCC 59.535 52.381 0.00 0.00 36.47 4.85
5192 5521 2.101783 TGGATGATCAACCCATGCAAC 58.898 47.619 18.52 0.00 38.98 4.17
5200 5529 2.298163 GCAATCCCATGGATGATCAACC 59.702 50.000 15.22 14.87 42.27 3.77
5204 5533 3.150458 TCAGCAATCCCATGGATGATC 57.850 47.619 15.22 0.00 42.27 2.92
5220 5551 3.338249 TCAAGGTAGCAGTTGAATCAGC 58.662 45.455 0.00 0.00 29.66 4.26
5253 5594 8.781196 CAAGAGGAATGTTCATTGATATACAGG 58.219 37.037 2.63 0.00 0.00 4.00
5262 5603 4.778534 ACTGCAAGAGGAATGTTCATTG 57.221 40.909 2.63 0.00 37.43 2.82
5263 5604 6.660521 TGATAACTGCAAGAGGAATGTTCATT 59.339 34.615 0.00 0.00 37.43 2.57
5296 5686 2.727123 ATGTGCCGTCCATCCATTAA 57.273 45.000 0.00 0.00 0.00 1.40
5297 5687 3.847671 TTATGTGCCGTCCATCCATTA 57.152 42.857 0.00 0.00 0.00 1.90
5338 5728 7.884257 TGAATGAAACATATGAAAACTGCTCA 58.116 30.769 10.38 0.03 0.00 4.26
5376 5771 3.916359 TCCTTCGGGCATTATTACACA 57.084 42.857 0.00 0.00 34.44 3.72
5389 5784 4.515191 TGTTCTGTGAATCTTTTCCTTCGG 59.485 41.667 0.00 0.00 0.00 4.30
5393 5788 5.192927 TGTGTGTTCTGTGAATCTTTTCCT 58.807 37.500 0.00 0.00 0.00 3.36
5420 5815 3.260740 GTGCTCTGAGATGGAAGACAAG 58.739 50.000 9.28 0.00 0.00 3.16
5425 5820 1.202330 AGGGTGCTCTGAGATGGAAG 58.798 55.000 9.28 0.00 0.00 3.46
5581 5999 3.983821 ACCAACCAAAAGGACCTACAAA 58.016 40.909 0.00 0.00 0.00 2.83
5606 6024 1.339727 GGCAAGTTAGTGTCGGGGATT 60.340 52.381 0.00 0.00 0.00 3.01
5607 6025 0.252197 GGCAAGTTAGTGTCGGGGAT 59.748 55.000 0.00 0.00 0.00 3.85
5608 6026 1.675219 GGCAAGTTAGTGTCGGGGA 59.325 57.895 0.00 0.00 0.00 4.81
5609 6027 1.740296 CGGCAAGTTAGTGTCGGGG 60.740 63.158 0.00 0.00 42.82 5.73
5610 6028 3.870606 CGGCAAGTTAGTGTCGGG 58.129 61.111 0.00 0.00 42.82 5.14
5648 6066 8.753497 AAGCTAGAAAAAGAAAAGGAGAAGAA 57.247 30.769 0.00 0.00 0.00 2.52
5715 6133 3.123959 GCATTCAATGTCATTGTGCAACC 59.876 43.478 25.19 10.22 40.17 3.77
5732 6150 6.127810 TGTTCTCTGATATTTGCTGCATTC 57.872 37.500 1.84 0.00 0.00 2.67
5733 6151 6.519679 TTGTTCTCTGATATTTGCTGCATT 57.480 33.333 1.84 0.00 0.00 3.56
5753 6171 6.920569 ACTCGTGTTTCTAAGTCATTTTGT 57.079 33.333 0.00 0.00 0.00 2.83
5759 6177 3.802139 CAGCAACTCGTGTTTCTAAGTCA 59.198 43.478 2.30 0.00 33.52 3.41
5773 6201 1.502163 AACTGACGCAGCAGCAACTC 61.502 55.000 0.82 0.00 42.27 3.01
5783 6211 3.495377 GGTACATACACAAAACTGACGCA 59.505 43.478 0.00 0.00 0.00 5.24
5807 6235 6.775629 TGTGGGCTTAACTTAGTCATCTTTTT 59.224 34.615 0.00 0.00 0.00 1.94
5817 6253 5.163652 GGCAATAGTTGTGGGCTTAACTTAG 60.164 44.000 6.83 0.00 38.11 2.18
5844 6280 6.731292 TGCAGCTTAGATAGTGAGGAATTA 57.269 37.500 0.00 0.00 0.00 1.40
5853 6289 9.217278 CTGATGATAAAATGCAGCTTAGATAGT 57.783 33.333 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.