Multiple sequence alignment - TraesCS5B01G499500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G499500 | chr5B | 100.000 | 3303 | 0 | 0 | 1 | 3303 | 665940706 | 665944008 | 0.000000e+00 | 6100 |
1 | TraesCS5B01G499500 | chr5B | 91.011 | 445 | 36 | 3 | 2604 | 3045 | 665830441 | 665830884 | 6.100000e-167 | 597 |
2 | TraesCS5B01G499500 | chr5B | 81.712 | 514 | 73 | 11 | 152 | 653 | 665961225 | 665961729 | 3.070000e-110 | 409 |
3 | TraesCS5B01G499500 | chr5B | 84.459 | 148 | 23 | 0 | 2616 | 2763 | 665963575 | 665963722 | 2.660000e-31 | 147 |
4 | TraesCS5B01G499500 | chr5D | 91.518 | 2582 | 131 | 20 | 1 | 2538 | 528764176 | 528766713 | 0.000000e+00 | 3474 |
5 | TraesCS5B01G499500 | chr5D | 79.426 | 2197 | 374 | 38 | 33 | 2188 | 528805335 | 528807494 | 0.000000e+00 | 1482 |
6 | TraesCS5B01G499500 | chr5D | 79.563 | 2016 | 338 | 37 | 63 | 2053 | 528753028 | 528754994 | 0.000000e+00 | 1373 |
7 | TraesCS5B01G499500 | chr5D | 90.355 | 591 | 31 | 8 | 2538 | 3106 | 528767177 | 528767763 | 0.000000e+00 | 752 |
8 | TraesCS5B01G499500 | chr5D | 78.061 | 196 | 27 | 9 | 2240 | 2435 | 528755277 | 528755456 | 3.480000e-20 | 110 |
9 | TraesCS5B01G499500 | chr6B | 80.015 | 1321 | 239 | 14 | 883 | 2195 | 106512232 | 106513535 | 0.000000e+00 | 953 |
10 | TraesCS5B01G499500 | chr6B | 78.990 | 614 | 88 | 18 | 253 | 827 | 106511585 | 106512196 | 6.690000e-102 | 381 |
11 | TraesCS5B01G499500 | chrUn | 79.898 | 786 | 137 | 14 | 1417 | 2195 | 97785708 | 97786479 | 1.040000e-154 | 556 |
12 | TraesCS5B01G499500 | chrUn | 79.058 | 616 | 84 | 22 | 253 | 827 | 97784586 | 97785197 | 6.690000e-102 | 381 |
13 | TraesCS5B01G499500 | chr1D | 76.872 | 1055 | 173 | 36 | 253 | 1266 | 476568595 | 476567571 | 6.280000e-147 | 531 |
14 | TraesCS5B01G499500 | chr1D | 86.395 | 147 | 20 | 0 | 145 | 291 | 476568736 | 476568590 | 9.490000e-36 | 161 |
15 | TraesCS5B01G499500 | chr1B | 78.000 | 450 | 60 | 20 | 394 | 805 | 662836822 | 662836374 | 2.550000e-61 | 246 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G499500 | chr5B | 665940706 | 665944008 | 3302 | False | 6100.0 | 6100 | 100.0000 | 1 | 3303 | 1 | chr5B.!!$F2 | 3302 |
1 | TraesCS5B01G499500 | chr5B | 665961225 | 665963722 | 2497 | False | 278.0 | 409 | 83.0855 | 152 | 2763 | 2 | chr5B.!!$F3 | 2611 |
2 | TraesCS5B01G499500 | chr5D | 528764176 | 528767763 | 3587 | False | 2113.0 | 3474 | 90.9365 | 1 | 3106 | 2 | chr5D.!!$F3 | 3105 |
3 | TraesCS5B01G499500 | chr5D | 528805335 | 528807494 | 2159 | False | 1482.0 | 1482 | 79.4260 | 33 | 2188 | 1 | chr5D.!!$F1 | 2155 |
4 | TraesCS5B01G499500 | chr5D | 528753028 | 528755456 | 2428 | False | 741.5 | 1373 | 78.8120 | 63 | 2435 | 2 | chr5D.!!$F2 | 2372 |
5 | TraesCS5B01G499500 | chr6B | 106511585 | 106513535 | 1950 | False | 667.0 | 953 | 79.5025 | 253 | 2195 | 2 | chr6B.!!$F1 | 1942 |
6 | TraesCS5B01G499500 | chrUn | 97784586 | 97786479 | 1893 | False | 468.5 | 556 | 79.4780 | 253 | 2195 | 2 | chrUn.!!$F1 | 1942 |
7 | TraesCS5B01G499500 | chr1D | 476567571 | 476568736 | 1165 | True | 346.0 | 531 | 81.6335 | 145 | 1266 | 2 | chr1D.!!$R1 | 1121 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
778 | 937 | 0.248907 | GCATGCACATTGCTAGCCTG | 60.249 | 55.0 | 14.21 | 12.33 | 45.31 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2461 | 3237 | 0.177141 | CGGAGCCCGGAATAAGTGAA | 59.823 | 55.0 | 0.73 | 0.0 | 44.15 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 50 | 7.500892 | TGCCTTTTCTGTCTAGTTGTTAATGAA | 59.499 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
46 | 51 | 8.017946 | GCCTTTTCTGTCTAGTTGTTAATGAAG | 58.982 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
47 | 52 | 9.273016 | CCTTTTCTGTCTAGTTGTTAATGAAGA | 57.727 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
86 | 91 | 3.845781 | ATAGCATGAAGGTGTTCCGAT | 57.154 | 42.857 | 0.00 | 0.00 | 39.05 | 4.18 |
89 | 94 | 2.489329 | AGCATGAAGGTGTTCCGATTTG | 59.511 | 45.455 | 0.00 | 0.00 | 39.05 | 2.32 |
125 | 130 | 6.613233 | ACTATGTATACTATTGACGCAGAGC | 58.387 | 40.000 | 4.17 | 0.00 | 0.00 | 4.09 |
180 | 185 | 1.410517 | ACCTGGTACATGATCTCGCAG | 59.589 | 52.381 | 0.00 | 0.00 | 38.20 | 5.18 |
322 | 366 | 4.966366 | GCATTTTCATGATCGTAGCAACTC | 59.034 | 41.667 | 0.00 | 0.00 | 31.07 | 3.01 |
466 | 513 | 3.338250 | TTCATGGGGCCGGAAGCT | 61.338 | 61.111 | 5.05 | 0.00 | 43.05 | 3.74 |
555 | 620 | 1.306642 | ATCACGTCGCGGAAGACTCT | 61.307 | 55.000 | 6.13 | 0.00 | 38.90 | 3.24 |
608 | 673 | 8.842358 | TCATGGAACTCCGGTATTTAAATATC | 57.158 | 34.615 | 11.00 | 9.57 | 39.43 | 1.63 |
667 | 807 | 3.740321 | TCGGCAAATCAAAGTTTCATTGC | 59.260 | 39.130 | 15.91 | 15.91 | 41.69 | 3.56 |
687 | 827 | 0.672342 | CTGTATCGGTACCCTTCCCG | 59.328 | 60.000 | 6.25 | 0.00 | 45.55 | 5.14 |
743 | 902 | 5.535753 | AAGTTTTAGCAGCCTCAACAAAT | 57.464 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
778 | 937 | 0.248907 | GCATGCACATTGCTAGCCTG | 60.249 | 55.000 | 14.21 | 12.33 | 45.31 | 4.85 |
837 | 1017 | 1.175983 | GGATTGTTGCAACACGGGGA | 61.176 | 55.000 | 31.17 | 17.16 | 38.92 | 4.81 |
848 | 1028 | 2.430367 | ACGGGGAGTTTCCTGTGC | 59.570 | 61.111 | 0.00 | 0.00 | 44.21 | 4.57 |
849 | 1029 | 2.742372 | CGGGGAGTTTCCTGTGCG | 60.742 | 66.667 | 0.00 | 0.00 | 36.57 | 5.34 |
850 | 1030 | 2.430367 | GGGGAGTTTCCTGTGCGT | 59.570 | 61.111 | 0.00 | 0.00 | 36.57 | 5.24 |
851 | 1031 | 1.966451 | GGGGAGTTTCCTGTGCGTG | 60.966 | 63.158 | 0.00 | 0.00 | 36.57 | 5.34 |
852 | 1032 | 2.617274 | GGGAGTTTCCTGTGCGTGC | 61.617 | 63.158 | 0.00 | 0.00 | 36.57 | 5.34 |
853 | 1033 | 1.891919 | GGAGTTTCCTGTGCGTGCA | 60.892 | 57.895 | 0.00 | 0.00 | 32.53 | 4.57 |
854 | 1034 | 1.571460 | GAGTTTCCTGTGCGTGCAG | 59.429 | 57.895 | 0.00 | 2.11 | 36.31 | 4.41 |
855 | 1035 | 0.880278 | GAGTTTCCTGTGCGTGCAGA | 60.880 | 55.000 | 9.40 | 0.00 | 38.70 | 4.26 |
856 | 1036 | 0.250467 | AGTTTCCTGTGCGTGCAGAT | 60.250 | 50.000 | 9.40 | 0.00 | 38.70 | 2.90 |
857 | 1037 | 0.593128 | GTTTCCTGTGCGTGCAGATT | 59.407 | 50.000 | 9.40 | 0.00 | 38.70 | 2.40 |
858 | 1038 | 1.001378 | GTTTCCTGTGCGTGCAGATTT | 60.001 | 47.619 | 9.40 | 0.00 | 38.70 | 2.17 |
859 | 1039 | 1.317613 | TTCCTGTGCGTGCAGATTTT | 58.682 | 45.000 | 9.40 | 0.00 | 38.70 | 1.82 |
860 | 1040 | 1.317613 | TCCTGTGCGTGCAGATTTTT | 58.682 | 45.000 | 9.40 | 0.00 | 38.70 | 1.94 |
886 | 1066 | 1.284657 | GTGAGGACGTGCAGATGATG | 58.715 | 55.000 | 10.52 | 0.00 | 0.00 | 3.07 |
978 | 1159 | 8.994429 | ATCTTGTAAATGTGAAGTCTGTAGAG | 57.006 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
990 | 1171 | 2.202810 | GTAGAGGAGGCACGCAGC | 60.203 | 66.667 | 0.00 | 0.00 | 44.65 | 5.25 |
1033 | 1214 | 4.940046 | AGAGCATCGAAGAATTGACATTGT | 59.060 | 37.500 | 0.00 | 0.00 | 43.58 | 2.71 |
1077 | 1258 | 2.482374 | GAACACATGGCGCTGCTC | 59.518 | 61.111 | 7.64 | 0.00 | 0.00 | 4.26 |
1104 | 1285 | 1.603802 | CTAGTGCCACCAACAACTGTG | 59.396 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
1109 | 1290 | 0.381801 | CCACCAACAACTGTGCAGAC | 59.618 | 55.000 | 6.17 | 0.00 | 0.00 | 3.51 |
1161 | 1342 | 6.942005 | TCATATTTCCATACTGGGTTATGCAG | 59.058 | 38.462 | 0.00 | 0.00 | 38.32 | 4.41 |
1230 | 1414 | 2.358615 | TGCAGCAGCCTACCAACG | 60.359 | 61.111 | 0.00 | 0.00 | 41.13 | 4.10 |
1253 | 1437 | 1.619827 | CGTCCAACTACCCAACCTACA | 59.380 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
1280 | 1464 | 9.941664 | CAAGATTTTTCTTGGCTACATGTATAG | 57.058 | 33.333 | 5.91 | 0.00 | 42.34 | 1.31 |
1510 | 1694 | 1.671901 | CTCCTCTTCTCCTCCCGTGC | 61.672 | 65.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1512 | 1696 | 1.216710 | CTCTTCTCCTCCCGTGCAC | 59.783 | 63.158 | 6.82 | 6.82 | 0.00 | 4.57 |
1628 | 1812 | 4.518590 | CGATGATCTGACTATCTCACCACT | 59.481 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
1630 | 1814 | 4.604156 | TGATCTGACTATCTCACCACTGT | 58.396 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
1681 | 1865 | 3.118112 | ACTCTCCCTCGAATGCATTGAAT | 60.118 | 43.478 | 18.59 | 0.00 | 0.00 | 2.57 |
1750 | 1934 | 6.375174 | ACAGCTCAACTTAATATGCATGAACA | 59.625 | 34.615 | 10.16 | 0.00 | 0.00 | 3.18 |
1760 | 1944 | 2.198827 | TGCATGAACAACCTACAGGG | 57.801 | 50.000 | 0.00 | 0.00 | 40.27 | 4.45 |
1767 | 1951 | 3.396276 | TGAACAACCTACAGGGATTGGAA | 59.604 | 43.478 | 0.00 | 0.00 | 40.27 | 3.53 |
1807 | 1991 | 3.282021 | ACACAGTTGCAATCACTGAGTT | 58.718 | 40.909 | 21.00 | 4.53 | 32.90 | 3.01 |
1813 | 1997 | 3.631145 | TGCAATCACTGAGTTTGAAGC | 57.369 | 42.857 | 1.41 | 0.00 | 0.00 | 3.86 |
1831 | 2015 | 2.232239 | GCACTGTAATGCGTTGACAG | 57.768 | 50.000 | 18.66 | 18.66 | 44.98 | 3.51 |
1860 | 2044 | 2.237392 | GCAATGGTTAGGAGGACTCACT | 59.763 | 50.000 | 1.32 | 0.00 | 0.00 | 3.41 |
1870 | 2054 | 2.421619 | GAGGACTCACTTTGCTCAAGG | 58.578 | 52.381 | 0.00 | 0.00 | 36.72 | 3.61 |
1935 | 2417 | 3.450457 | AGAGCTTACTCATCAACCTCCAG | 59.550 | 47.826 | 0.00 | 0.00 | 46.09 | 3.86 |
1949 | 2431 | 6.552008 | TCAACCTCCAGGAACTTCATATTTT | 58.448 | 36.000 | 0.00 | 0.00 | 34.60 | 1.82 |
2004 | 2560 | 3.999663 | CAGAGGTGAACCAGATGAAACTC | 59.000 | 47.826 | 1.62 | 0.00 | 38.89 | 3.01 |
2059 | 2620 | 5.856126 | TTGCTCTTATGTTTTACCGACTG | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
2193 | 2901 | 5.589050 | GGGGTAAACCAGATTAGCTTGTTAG | 59.411 | 44.000 | 0.00 | 0.00 | 42.91 | 2.34 |
2195 | 2903 | 7.054751 | GGGTAAACCAGATTAGCTTGTTAGAT | 58.945 | 38.462 | 0.00 | 0.00 | 39.85 | 1.98 |
2229 | 2955 | 9.679661 | AAAAACAATGTTACCTTCCAGAAAATT | 57.320 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
2230 | 2956 | 8.661352 | AAACAATGTTACCTTCCAGAAAATTG | 57.339 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
2235 | 2961 | 5.008217 | TGTTACCTTCCAGAAAATTGTCGTG | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2249 | 2975 | 1.066303 | TGTCGTGCCCATGTGTTTTTC | 59.934 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
2262 | 2988 | 7.222611 | CCCATGTGTTTTTCTAACAAGAAACAG | 59.777 | 37.037 | 0.19 | 0.00 | 41.16 | 3.16 |
2389 | 3149 | 1.191489 | TTCTGACGCCATGGTGGAGA | 61.191 | 55.000 | 28.34 | 23.67 | 39.92 | 3.71 |
2394 | 3154 | 1.002134 | CGCCATGGTGGAGACCTTT | 60.002 | 57.895 | 18.06 | 0.00 | 39.92 | 3.11 |
2460 | 3236 | 9.634021 | TTTTTGCCTTTTATTTCCCATAAACTT | 57.366 | 25.926 | 0.00 | 0.00 | 0.00 | 2.66 |
2461 | 3237 | 9.634021 | TTTTGCCTTTTATTTCCCATAAACTTT | 57.366 | 25.926 | 0.00 | 0.00 | 0.00 | 2.66 |
2463 | 3239 | 8.840833 | TGCCTTTTATTTCCCATAAACTTTTC | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2464 | 3240 | 8.432805 | TGCCTTTTATTTCCCATAAACTTTTCA | 58.567 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2465 | 3241 | 8.717821 | GCCTTTTATTTCCCATAAACTTTTCAC | 58.282 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2490 | 3268 | 4.415783 | GGGCTCCGATGGTTTTGT | 57.584 | 55.556 | 0.00 | 0.00 | 0.00 | 2.83 |
2492 | 3270 | 0.608035 | GGGCTCCGATGGTTTTGTGA | 60.608 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2493 | 3271 | 0.804989 | GGCTCCGATGGTTTTGTGAG | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2495 | 3273 | 1.522668 | CTCCGATGGTTTTGTGAGCA | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2496 | 3274 | 1.197721 | CTCCGATGGTTTTGTGAGCAC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2497 | 3275 | 1.202758 | TCCGATGGTTTTGTGAGCACT | 60.203 | 47.619 | 1.99 | 0.00 | 0.00 | 4.40 |
2511 | 3289 | 6.072112 | TGTGAGCACTTTCACTTTATTTCC | 57.928 | 37.500 | 7.56 | 0.00 | 46.00 | 3.13 |
2524 | 3302 | 7.695055 | TCACTTTATTTCCCCTTCTGTATTGA | 58.305 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2570 | 3816 | 4.398988 | TGAGTGACTTCAGCAACACAAAAT | 59.601 | 37.500 | 0.00 | 0.00 | 35.97 | 1.82 |
2606 | 3859 | 6.864342 | ACAGTATTCTACTACGAGCACATTT | 58.136 | 36.000 | 0.00 | 0.00 | 37.23 | 2.32 |
2609 | 3862 | 8.129840 | CAGTATTCTACTACGAGCACATTTACT | 58.870 | 37.037 | 0.00 | 0.00 | 37.23 | 2.24 |
2617 | 3900 | 3.244078 | ACGAGCACATTTACTCTGGTCAA | 60.244 | 43.478 | 0.00 | 0.00 | 32.98 | 3.18 |
2636 | 3919 | 1.961277 | CTTTCGACGTTGCTGCCCT | 60.961 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
2644 | 3927 | 1.148157 | CGTTGCTGCCCTATGACTCG | 61.148 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2704 | 3987 | 3.490933 | GCTTCTGTATACCGTCTCATGCA | 60.491 | 47.826 | 0.00 | 0.00 | 0.00 | 3.96 |
2779 | 4062 | 4.844998 | ATGTATGAGGTCTCTGACATCG | 57.155 | 45.455 | 7.65 | 0.00 | 44.84 | 3.84 |
2781 | 4064 | 0.749649 | ATGAGGTCTCTGACATCGCC | 59.250 | 55.000 | 7.65 | 0.00 | 44.84 | 5.54 |
2786 | 4069 | 0.454600 | GTCTCTGACATCGCCGGTAA | 59.545 | 55.000 | 1.90 | 0.00 | 32.09 | 2.85 |
2822 | 4107 | 9.261180 | AGTATTAGTTCAATGTGGTATCGATTG | 57.739 | 33.333 | 1.71 | 0.00 | 0.00 | 2.67 |
2828 | 4113 | 0.529773 | TGTGGTATCGATTGCTCGCC | 60.530 | 55.000 | 1.71 | 0.00 | 44.65 | 5.54 |
2859 | 4144 | 2.503765 | TCGTGCTCTTATTTCCCCATGA | 59.496 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
2960 | 4246 | 4.703093 | TGTGCAATCATGACACTGATCATT | 59.297 | 37.500 | 14.06 | 0.00 | 37.20 | 2.57 |
2961 | 4247 | 5.881443 | TGTGCAATCATGACACTGATCATTA | 59.119 | 36.000 | 14.06 | 0.00 | 37.20 | 1.90 |
2962 | 4248 | 6.544564 | TGTGCAATCATGACACTGATCATTAT | 59.455 | 34.615 | 14.06 | 0.00 | 37.20 | 1.28 |
2986 | 4282 | 7.837202 | TCCAAATATAAGACGTGTTTGTAGG | 57.163 | 36.000 | 2.22 | 0.00 | 0.00 | 3.18 |
2998 | 4294 | 7.769044 | AGACGTGTTTGTAGGCTAATTTGATAT | 59.231 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
3006 | 4302 | 5.248380 | AGGCTAATTTGATATGGAGGGAC | 57.752 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
3056 | 4352 | 7.784633 | TTTCATTAGATGTACATTGCATCGA | 57.215 | 32.000 | 10.30 | 0.65 | 45.25 | 3.59 |
3073 | 4369 | 6.599437 | TGCATCGAGCTACTTTCTTAAAAAC | 58.401 | 36.000 | 8.07 | 0.00 | 45.94 | 2.43 |
3079 | 4377 | 7.279313 | TCGAGCTACTTTCTTAAAAACACACTT | 59.721 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3082 | 4380 | 8.618677 | AGCTACTTTCTTAAAAACACACTTACC | 58.381 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
3087 | 4385 | 7.995463 | TTCTTAAAAACACACTTACCAATGC | 57.005 | 32.000 | 0.00 | 0.00 | 0.00 | 3.56 |
3093 | 4391 | 4.202245 | ACACACTTACCAATGCGACTAT | 57.798 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
3095 | 4393 | 4.180817 | CACACTTACCAATGCGACTATGA | 58.819 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
3099 | 4397 | 2.604046 | ACCAATGCGACTATGAGGTC | 57.396 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3110 | 4408 | 5.098218 | GACTATGAGGTCGCACTAGTAAG | 57.902 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
3111 | 4409 | 3.884091 | ACTATGAGGTCGCACTAGTAAGG | 59.116 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
3112 | 4410 | 2.211250 | TGAGGTCGCACTAGTAAGGT | 57.789 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
3113 | 4411 | 3.354948 | TGAGGTCGCACTAGTAAGGTA | 57.645 | 47.619 | 0.00 | 0.00 | 0.00 | 3.08 |
3114 | 4412 | 3.012518 | TGAGGTCGCACTAGTAAGGTAC | 58.987 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3115 | 4413 | 2.357323 | GAGGTCGCACTAGTAAGGTACC | 59.643 | 54.545 | 2.73 | 2.73 | 0.00 | 3.34 |
3116 | 4414 | 1.406898 | GGTCGCACTAGTAAGGTACCC | 59.593 | 57.143 | 8.74 | 0.00 | 0.00 | 3.69 |
3117 | 4415 | 1.064654 | GTCGCACTAGTAAGGTACCCG | 59.935 | 57.143 | 8.74 | 1.35 | 0.00 | 5.28 |
3118 | 4416 | 1.098050 | CGCACTAGTAAGGTACCCGT | 58.902 | 55.000 | 8.74 | 0.00 | 0.00 | 5.28 |
3119 | 4417 | 1.202222 | CGCACTAGTAAGGTACCCGTG | 60.202 | 57.143 | 8.74 | 7.83 | 34.46 | 4.94 |
3120 | 4418 | 1.470458 | GCACTAGTAAGGTACCCGTGC | 60.470 | 57.143 | 8.74 | 13.58 | 43.24 | 5.34 |
3121 | 4419 | 1.820519 | CACTAGTAAGGTACCCGTGCA | 59.179 | 52.381 | 8.74 | 0.00 | 0.00 | 4.57 |
3122 | 4420 | 2.429610 | CACTAGTAAGGTACCCGTGCAT | 59.570 | 50.000 | 8.74 | 0.00 | 0.00 | 3.96 |
3123 | 4421 | 3.633525 | CACTAGTAAGGTACCCGTGCATA | 59.366 | 47.826 | 8.74 | 0.00 | 0.00 | 3.14 |
3124 | 4422 | 4.280174 | CACTAGTAAGGTACCCGTGCATAT | 59.720 | 45.833 | 8.74 | 0.00 | 0.00 | 1.78 |
3125 | 4423 | 4.897670 | ACTAGTAAGGTACCCGTGCATATT | 59.102 | 41.667 | 8.74 | 0.00 | 0.00 | 1.28 |
3126 | 4424 | 6.016024 | CACTAGTAAGGTACCCGTGCATATTA | 60.016 | 42.308 | 8.74 | 0.00 | 0.00 | 0.98 |
3127 | 4425 | 5.205759 | AGTAAGGTACCCGTGCATATTAC | 57.794 | 43.478 | 8.74 | 8.19 | 0.00 | 1.89 |
3128 | 4426 | 3.480505 | AAGGTACCCGTGCATATTACC | 57.519 | 47.619 | 8.74 | 8.12 | 33.63 | 2.85 |
3129 | 4427 | 1.695788 | AGGTACCCGTGCATATTACCC | 59.304 | 52.381 | 8.74 | 0.16 | 33.89 | 3.69 |
3130 | 4428 | 1.417145 | GGTACCCGTGCATATTACCCA | 59.583 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
3131 | 4429 | 2.486918 | GTACCCGTGCATATTACCCAC | 58.513 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
3132 | 4430 | 0.913205 | ACCCGTGCATATTACCCACA | 59.087 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3133 | 4431 | 1.282447 | ACCCGTGCATATTACCCACAA | 59.718 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
3134 | 4432 | 2.291024 | ACCCGTGCATATTACCCACAAA | 60.291 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3135 | 4433 | 2.755655 | CCCGTGCATATTACCCACAAAA | 59.244 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
3136 | 4434 | 3.383185 | CCCGTGCATATTACCCACAAAAT | 59.617 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3137 | 4435 | 4.580995 | CCCGTGCATATTACCCACAAAATA | 59.419 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
3138 | 4436 | 5.506649 | CCCGTGCATATTACCCACAAAATAC | 60.507 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3139 | 4437 | 5.506649 | CCGTGCATATTACCCACAAAATACC | 60.507 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3140 | 4438 | 5.066634 | CGTGCATATTACCCACAAAATACCA | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3141 | 4439 | 6.238897 | CGTGCATATTACCCACAAAATACCAT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
3142 | 4440 | 7.145323 | GTGCATATTACCCACAAAATACCATC | 58.855 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
3143 | 4441 | 6.836007 | TGCATATTACCCACAAAATACCATCA | 59.164 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
3144 | 4442 | 7.145323 | GCATATTACCCACAAAATACCATCAC | 58.855 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
3145 | 4443 | 7.657336 | CATATTACCCACAAAATACCATCACC | 58.343 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
3146 | 4444 | 3.534357 | ACCCACAAAATACCATCACCA | 57.466 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
3147 | 4445 | 4.059773 | ACCCACAAAATACCATCACCAT | 57.940 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
3148 | 4446 | 4.424842 | ACCCACAAAATACCATCACCATT | 58.575 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3149 | 4447 | 4.466015 | ACCCACAAAATACCATCACCATTC | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
3150 | 4448 | 4.465660 | CCCACAAAATACCATCACCATTCA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3151 | 4449 | 5.394443 | CCCACAAAATACCATCACCATTCAG | 60.394 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3152 | 4450 | 5.104374 | CACAAAATACCATCACCATTCAGC | 58.896 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
3153 | 4451 | 4.771577 | ACAAAATACCATCACCATTCAGCA | 59.228 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
3154 | 4452 | 5.245751 | ACAAAATACCATCACCATTCAGCAA | 59.754 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3155 | 4453 | 6.070653 | ACAAAATACCATCACCATTCAGCAAT | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
3156 | 4454 | 7.123997 | ACAAAATACCATCACCATTCAGCAATA | 59.876 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
3157 | 4455 | 7.844493 | AAATACCATCACCATTCAGCAATAT | 57.156 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3158 | 4456 | 7.844493 | AATACCATCACCATTCAGCAATATT | 57.156 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3159 | 4457 | 7.844493 | ATACCATCACCATTCAGCAATATTT | 57.156 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3160 | 4458 | 8.938801 | ATACCATCACCATTCAGCAATATTTA | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3161 | 4459 | 7.042797 | ACCATCACCATTCAGCAATATTTAC | 57.957 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3162 | 4460 | 6.606796 | ACCATCACCATTCAGCAATATTTACA | 59.393 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3163 | 4461 | 7.143340 | CCATCACCATTCAGCAATATTTACAG | 58.857 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
3164 | 4462 | 7.013559 | CCATCACCATTCAGCAATATTTACAGA | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3165 | 4463 | 7.320443 | TCACCATTCAGCAATATTTACAGAC | 57.680 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3166 | 4464 | 7.112122 | TCACCATTCAGCAATATTTACAGACT | 58.888 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
3167 | 4465 | 7.280876 | TCACCATTCAGCAATATTTACAGACTC | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
3168 | 4466 | 7.281774 | CACCATTCAGCAATATTTACAGACTCT | 59.718 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
3169 | 4467 | 8.486210 | ACCATTCAGCAATATTTACAGACTCTA | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3170 | 4468 | 9.499479 | CCATTCAGCAATATTTACAGACTCTAT | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
3186 | 4484 | 7.863375 | ACAGACTCTATATTGTACAAATCGAGC | 59.137 | 37.037 | 13.23 | 12.45 | 0.00 | 5.03 |
3187 | 4485 | 8.079203 | CAGACTCTATATTGTACAAATCGAGCT | 58.921 | 37.037 | 13.23 | 13.93 | 0.00 | 4.09 |
3188 | 4486 | 8.634444 | AGACTCTATATTGTACAAATCGAGCTT | 58.366 | 33.333 | 13.23 | 7.49 | 0.00 | 3.74 |
3189 | 4487 | 8.804688 | ACTCTATATTGTACAAATCGAGCTTC | 57.195 | 34.615 | 13.23 | 0.00 | 0.00 | 3.86 |
3190 | 4488 | 8.414003 | ACTCTATATTGTACAAATCGAGCTTCA | 58.586 | 33.333 | 13.23 | 0.00 | 0.00 | 3.02 |
3191 | 4489 | 9.416794 | CTCTATATTGTACAAATCGAGCTTCAT | 57.583 | 33.333 | 13.23 | 0.00 | 0.00 | 2.57 |
3192 | 4490 | 9.764363 | TCTATATTGTACAAATCGAGCTTCATT | 57.236 | 29.630 | 13.23 | 0.00 | 0.00 | 2.57 |
3195 | 4493 | 6.552859 | TTGTACAAATCGAGCTTCATTTGA | 57.447 | 33.333 | 26.34 | 14.06 | 40.89 | 2.69 |
3196 | 4494 | 6.741992 | TGTACAAATCGAGCTTCATTTGAT | 57.258 | 33.333 | 26.34 | 17.25 | 40.89 | 2.57 |
3197 | 4495 | 7.144722 | TGTACAAATCGAGCTTCATTTGATT | 57.855 | 32.000 | 26.34 | 14.41 | 40.89 | 2.57 |
3198 | 4496 | 7.592938 | TGTACAAATCGAGCTTCATTTGATTT | 58.407 | 30.769 | 26.34 | 12.86 | 40.89 | 2.17 |
3199 | 4497 | 8.081633 | TGTACAAATCGAGCTTCATTTGATTTT | 58.918 | 29.630 | 26.34 | 13.67 | 40.89 | 1.82 |
3200 | 4498 | 9.554724 | GTACAAATCGAGCTTCATTTGATTTTA | 57.445 | 29.630 | 26.34 | 12.98 | 40.89 | 1.52 |
3202 | 4500 | 9.294030 | ACAAATCGAGCTTCATTTGATTTTATC | 57.706 | 29.630 | 26.34 | 0.00 | 40.89 | 1.75 |
3203 | 4501 | 8.466799 | CAAATCGAGCTTCATTTGATTTTATCG | 58.533 | 33.333 | 19.51 | 0.97 | 40.89 | 2.92 |
3204 | 4502 | 6.902224 | TCGAGCTTCATTTGATTTTATCGA | 57.098 | 33.333 | 0.00 | 0.00 | 33.55 | 3.59 |
3205 | 4503 | 7.482654 | TCGAGCTTCATTTGATTTTATCGAT | 57.517 | 32.000 | 2.16 | 2.16 | 31.28 | 3.59 |
3206 | 4504 | 8.587952 | TCGAGCTTCATTTGATTTTATCGATA | 57.412 | 30.769 | 0.00 | 0.00 | 31.28 | 2.92 |
3207 | 4505 | 9.040939 | TCGAGCTTCATTTGATTTTATCGATAA | 57.959 | 29.630 | 13.85 | 13.85 | 31.28 | 1.75 |
3208 | 4506 | 9.310971 | CGAGCTTCATTTGATTTTATCGATAAG | 57.689 | 33.333 | 16.89 | 5.08 | 0.00 | 1.73 |
3223 | 4521 | 8.981724 | TTATCGATAAGAAATAGATGGTTCGG | 57.018 | 34.615 | 13.85 | 0.00 | 0.00 | 4.30 |
3224 | 4522 | 6.401047 | TCGATAAGAAATAGATGGTTCGGT | 57.599 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
3225 | 4523 | 6.812998 | TCGATAAGAAATAGATGGTTCGGTT | 58.187 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3226 | 4524 | 7.944061 | TCGATAAGAAATAGATGGTTCGGTTA | 58.056 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
3227 | 4525 | 8.080417 | TCGATAAGAAATAGATGGTTCGGTTAG | 58.920 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
3228 | 4526 | 7.328737 | CGATAAGAAATAGATGGTTCGGTTAGG | 59.671 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
3229 | 4527 | 5.952347 | AGAAATAGATGGTTCGGTTAGGT | 57.048 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
3230 | 4528 | 6.309389 | AGAAATAGATGGTTCGGTTAGGTT | 57.691 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
3231 | 4529 | 6.113411 | AGAAATAGATGGTTCGGTTAGGTTG | 58.887 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3232 | 4530 | 5.431179 | AATAGATGGTTCGGTTAGGTTGT | 57.569 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3233 | 4531 | 3.782656 | AGATGGTTCGGTTAGGTTGTT | 57.217 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
3234 | 4532 | 3.408634 | AGATGGTTCGGTTAGGTTGTTG | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
3235 | 4533 | 3.071892 | AGATGGTTCGGTTAGGTTGTTGA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3236 | 4534 | 3.278668 | TGGTTCGGTTAGGTTGTTGAA | 57.721 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
3237 | 4535 | 3.207778 | TGGTTCGGTTAGGTTGTTGAAG | 58.792 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
3238 | 4536 | 3.208594 | GGTTCGGTTAGGTTGTTGAAGT | 58.791 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3239 | 4537 | 3.249320 | GGTTCGGTTAGGTTGTTGAAGTC | 59.751 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3240 | 4538 | 4.124970 | GTTCGGTTAGGTTGTTGAAGTCT | 58.875 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
3241 | 4539 | 5.291971 | GTTCGGTTAGGTTGTTGAAGTCTA | 58.708 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
3242 | 4540 | 5.130292 | TCGGTTAGGTTGTTGAAGTCTAG | 57.870 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3243 | 4541 | 4.828939 | TCGGTTAGGTTGTTGAAGTCTAGA | 59.171 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3244 | 4542 | 5.479375 | TCGGTTAGGTTGTTGAAGTCTAGAT | 59.521 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3245 | 4543 | 5.805994 | CGGTTAGGTTGTTGAAGTCTAGATC | 59.194 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
3246 | 4544 | 6.107343 | GGTTAGGTTGTTGAAGTCTAGATCC | 58.893 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3247 | 4545 | 4.828072 | AGGTTGTTGAAGTCTAGATCCC | 57.172 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
3248 | 4546 | 4.430441 | AGGTTGTTGAAGTCTAGATCCCT | 58.570 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
3249 | 4547 | 5.590818 | AGGTTGTTGAAGTCTAGATCCCTA | 58.409 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
3250 | 4548 | 6.206042 | AGGTTGTTGAAGTCTAGATCCCTAT | 58.794 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3251 | 4549 | 6.098982 | AGGTTGTTGAAGTCTAGATCCCTATG | 59.901 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
3252 | 4550 | 6.098409 | GGTTGTTGAAGTCTAGATCCCTATGA | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 2.15 |
3253 | 4551 | 6.716934 | TGTTGAAGTCTAGATCCCTATGAC | 57.283 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3254 | 4552 | 6.194967 | TGTTGAAGTCTAGATCCCTATGACA | 58.805 | 40.000 | 0.00 | 0.00 | 31.42 | 3.58 |
3255 | 4553 | 6.096987 | TGTTGAAGTCTAGATCCCTATGACAC | 59.903 | 42.308 | 0.00 | 0.00 | 31.42 | 3.67 |
3256 | 4554 | 5.141182 | TGAAGTCTAGATCCCTATGACACC | 58.859 | 45.833 | 0.00 | 0.00 | 31.42 | 4.16 |
3257 | 4555 | 5.103473 | TGAAGTCTAGATCCCTATGACACCT | 60.103 | 44.000 | 0.00 | 0.00 | 31.42 | 4.00 |
3258 | 4556 | 5.411103 | AGTCTAGATCCCTATGACACCTT | 57.589 | 43.478 | 0.00 | 0.00 | 31.42 | 3.50 |
3259 | 4557 | 5.390387 | AGTCTAGATCCCTATGACACCTTC | 58.610 | 45.833 | 0.00 | 0.00 | 31.42 | 3.46 |
3260 | 4558 | 5.135362 | AGTCTAGATCCCTATGACACCTTCT | 59.865 | 44.000 | 0.00 | 0.00 | 31.42 | 2.85 |
3261 | 4559 | 6.333168 | AGTCTAGATCCCTATGACACCTTCTA | 59.667 | 42.308 | 0.00 | 0.00 | 31.42 | 2.10 |
3262 | 4560 | 6.431852 | GTCTAGATCCCTATGACACCTTCTAC | 59.568 | 46.154 | 0.00 | 0.00 | 0.00 | 2.59 |
3263 | 4561 | 5.144159 | AGATCCCTATGACACCTTCTACA | 57.856 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
3264 | 4562 | 5.144100 | AGATCCCTATGACACCTTCTACAG | 58.856 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
3265 | 4563 | 4.603094 | TCCCTATGACACCTTCTACAGA | 57.397 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
3266 | 4564 | 4.279145 | TCCCTATGACACCTTCTACAGAC | 58.721 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3267 | 4565 | 3.385111 | CCCTATGACACCTTCTACAGACC | 59.615 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
3268 | 4566 | 3.066900 | CCTATGACACCTTCTACAGACCG | 59.933 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
3269 | 4567 | 1.254026 | TGACACCTTCTACAGACCGG | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3270 | 4568 | 1.202964 | TGACACCTTCTACAGACCGGA | 60.203 | 52.381 | 9.46 | 0.00 | 0.00 | 5.14 |
3271 | 4569 | 2.100989 | GACACCTTCTACAGACCGGAT | 58.899 | 52.381 | 9.46 | 0.00 | 0.00 | 4.18 |
3272 | 4570 | 2.099427 | GACACCTTCTACAGACCGGATC | 59.901 | 54.545 | 9.46 | 1.42 | 0.00 | 3.36 |
3273 | 4571 | 1.409427 | CACCTTCTACAGACCGGATCC | 59.591 | 57.143 | 9.46 | 0.00 | 0.00 | 3.36 |
3274 | 4572 | 1.288335 | ACCTTCTACAGACCGGATCCT | 59.712 | 52.381 | 9.46 | 0.00 | 0.00 | 3.24 |
3275 | 4573 | 2.512896 | ACCTTCTACAGACCGGATCCTA | 59.487 | 50.000 | 9.46 | 0.00 | 0.00 | 2.94 |
3276 | 4574 | 3.140519 | ACCTTCTACAGACCGGATCCTAT | 59.859 | 47.826 | 9.46 | 0.00 | 0.00 | 2.57 |
3277 | 4575 | 3.759618 | CCTTCTACAGACCGGATCCTATC | 59.240 | 52.174 | 9.46 | 7.10 | 0.00 | 2.08 |
3278 | 4576 | 4.399219 | CTTCTACAGACCGGATCCTATCA | 58.601 | 47.826 | 9.46 | 0.00 | 0.00 | 2.15 |
3279 | 4577 | 4.448720 | TCTACAGACCGGATCCTATCAA | 57.551 | 45.455 | 9.46 | 0.00 | 0.00 | 2.57 |
3280 | 4578 | 4.142790 | TCTACAGACCGGATCCTATCAAC | 58.857 | 47.826 | 9.46 | 0.00 | 0.00 | 3.18 |
3281 | 4579 | 2.040178 | ACAGACCGGATCCTATCAACC | 58.960 | 52.381 | 9.46 | 0.00 | 0.00 | 3.77 |
3282 | 4580 | 1.344763 | CAGACCGGATCCTATCAACCC | 59.655 | 57.143 | 9.46 | 0.00 | 0.00 | 4.11 |
3283 | 4581 | 0.685660 | GACCGGATCCTATCAACCCC | 59.314 | 60.000 | 9.46 | 0.00 | 0.00 | 4.95 |
3284 | 4582 | 0.030501 | ACCGGATCCTATCAACCCCA | 60.031 | 55.000 | 9.46 | 0.00 | 0.00 | 4.96 |
3285 | 4583 | 1.136828 | CCGGATCCTATCAACCCCAA | 58.863 | 55.000 | 10.75 | 0.00 | 0.00 | 4.12 |
3286 | 4584 | 1.705186 | CCGGATCCTATCAACCCCAAT | 59.295 | 52.381 | 10.75 | 0.00 | 0.00 | 3.16 |
3287 | 4585 | 2.290323 | CCGGATCCTATCAACCCCAATC | 60.290 | 54.545 | 10.75 | 0.00 | 0.00 | 2.67 |
3288 | 4586 | 2.371841 | CGGATCCTATCAACCCCAATCA | 59.628 | 50.000 | 10.75 | 0.00 | 0.00 | 2.57 |
3289 | 4587 | 3.009473 | CGGATCCTATCAACCCCAATCAT | 59.991 | 47.826 | 10.75 | 0.00 | 0.00 | 2.45 |
3290 | 4588 | 4.338879 | GGATCCTATCAACCCCAATCATG | 58.661 | 47.826 | 3.84 | 0.00 | 0.00 | 3.07 |
3292 | 4590 | 2.158475 | TCCTATCAACCCCAATCATGGC | 60.158 | 50.000 | 0.00 | 0.00 | 46.09 | 4.40 |
3293 | 4591 | 2.242043 | CTATCAACCCCAATCATGGCC | 58.758 | 52.381 | 0.00 | 0.00 | 46.09 | 5.36 |
3294 | 4592 | 0.339162 | ATCAACCCCAATCATGGCCA | 59.661 | 50.000 | 8.56 | 8.56 | 46.09 | 5.36 |
3295 | 4593 | 0.339162 | TCAACCCCAATCATGGCCAT | 59.661 | 50.000 | 14.09 | 14.09 | 46.09 | 4.40 |
3296 | 4594 | 0.466543 | CAACCCCAATCATGGCCATG | 59.533 | 55.000 | 35.76 | 35.76 | 46.09 | 3.66 |
3297 | 4595 | 0.691748 | AACCCCAATCATGGCCATGG | 60.692 | 55.000 | 38.81 | 27.55 | 46.09 | 3.66 |
3298 | 4596 | 1.233659 | CCCCAATCATGGCCATGGA | 59.766 | 57.895 | 38.81 | 27.30 | 46.09 | 3.41 |
3299 | 4597 | 1.117142 | CCCCAATCATGGCCATGGAC | 61.117 | 60.000 | 38.81 | 15.32 | 46.09 | 4.02 |
3300 | 4598 | 0.105862 | CCCAATCATGGCCATGGACT | 60.106 | 55.000 | 38.81 | 23.88 | 46.09 | 3.85 |
3301 | 4599 | 1.690209 | CCCAATCATGGCCATGGACTT | 60.690 | 52.381 | 38.81 | 27.37 | 46.09 | 3.01 |
3302 | 4600 | 1.411246 | CCAATCATGGCCATGGACTTG | 59.589 | 52.381 | 38.81 | 33.51 | 40.58 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 7.435068 | TCATTAACAACTAGACAGAAAAGGC | 57.565 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
125 | 130 | 6.073980 | CCAAGAATTCAGTTTCAACTTGCATG | 60.074 | 38.462 | 8.44 | 0.00 | 37.08 | 4.06 |
180 | 185 | 0.465705 | TCATCGGCCAGAACAGATCC | 59.534 | 55.000 | 2.24 | 0.00 | 0.00 | 3.36 |
322 | 366 | 1.718396 | TGCTTCACGATCAAGCTGAG | 58.282 | 50.000 | 15.06 | 0.00 | 45.59 | 3.35 |
468 | 515 | 1.337823 | CCTTGTAGACTCCCACCGTTG | 60.338 | 57.143 | 0.00 | 0.00 | 0.00 | 4.10 |
555 | 620 | 2.642311 | TCATGACCTTTGGCAGTCCTAA | 59.358 | 45.455 | 0.00 | 0.00 | 31.76 | 2.69 |
608 | 673 | 6.721571 | AAATAATAACCGTGACAGTGTGAG | 57.278 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
687 | 827 | 9.132521 | CACAAAAACAATAGTCATTCCAAGATC | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
837 | 1017 | 0.250467 | ATCTGCACGCACAGGAAACT | 60.250 | 50.000 | 5.53 | 0.00 | 46.44 | 2.66 |
862 | 1042 | 2.031258 | TCTGCACGTCCTCACAAAAA | 57.969 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
863 | 1043 | 1.872952 | CATCTGCACGTCCTCACAAAA | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
864 | 1044 | 1.069978 | TCATCTGCACGTCCTCACAAA | 59.930 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
865 | 1045 | 0.678950 | TCATCTGCACGTCCTCACAA | 59.321 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
866 | 1046 | 0.897621 | ATCATCTGCACGTCCTCACA | 59.102 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
867 | 1047 | 1.284657 | CATCATCTGCACGTCCTCAC | 58.715 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
868 | 1048 | 0.176449 | CCATCATCTGCACGTCCTCA | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
869 | 1049 | 0.176680 | ACCATCATCTGCACGTCCTC | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
870 | 1050 | 0.107993 | CACCATCATCTGCACGTCCT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
871 | 1051 | 0.108186 | TCACCATCATCTGCACGTCC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
872 | 1052 | 1.725641 | TTCACCATCATCTGCACGTC | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
873 | 1053 | 2.093288 | AGATTCACCATCATCTGCACGT | 60.093 | 45.455 | 0.00 | 0.00 | 33.75 | 4.49 |
886 | 1066 | 1.742761 | TTGCTGCTGCTAGATTCACC | 58.257 | 50.000 | 17.00 | 0.00 | 40.48 | 4.02 |
911 | 1091 | 5.105635 | TGAGGATTTGCATGCTTAAGAAAGG | 60.106 | 40.000 | 20.33 | 0.00 | 29.51 | 3.11 |
978 | 1159 | 2.182842 | CCTTATGCTGCGTGCCTCC | 61.183 | 63.158 | 4.25 | 0.00 | 42.00 | 4.30 |
990 | 1171 | 6.095377 | GCTCTGTTTTTCCATCAACCTTATG | 58.905 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1077 | 1258 | 1.537202 | GTTGGTGGCACTAGCTCTTTG | 59.463 | 52.381 | 18.45 | 0.00 | 41.70 | 2.77 |
1109 | 1290 | 9.801873 | CACCCTTGTAACCAAATATATTCAAAG | 57.198 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
1230 | 1414 | 0.672711 | GGTTGGGTAGTTGGACGAGC | 60.673 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1253 | 1437 | 6.655078 | ACATGTAGCCAAGAAAAATCTTGT | 57.345 | 33.333 | 15.25 | 3.24 | 43.99 | 3.16 |
1280 | 1464 | 2.755103 | CCTGTGGTAAATTCTTCCAGGC | 59.245 | 50.000 | 0.00 | 0.00 | 32.42 | 4.85 |
1392 | 1576 | 1.775459 | ACAGCTCTAGGAGGATACGGA | 59.225 | 52.381 | 0.00 | 0.00 | 46.39 | 4.69 |
1397 | 1581 | 1.118838 | GTGCACAGCTCTAGGAGGAT | 58.881 | 55.000 | 13.17 | 0.00 | 0.00 | 3.24 |
1510 | 1694 | 5.573146 | GGACTTCTCAACTTTCAGTTTGTG | 58.427 | 41.667 | 0.00 | 0.00 | 36.03 | 3.33 |
1512 | 1696 | 4.570772 | TCGGACTTCTCAACTTTCAGTTTG | 59.429 | 41.667 | 0.00 | 0.00 | 36.03 | 2.93 |
1681 | 1865 | 5.299148 | CAACCATTCTGGCAGAATTTTCAA | 58.701 | 37.500 | 34.13 | 12.35 | 41.90 | 2.69 |
1720 | 1904 | 5.817296 | TGCATATTAAGTTGAGCTGTCGAAT | 59.183 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1750 | 1934 | 5.077564 | GTTCTTTTCCAATCCCTGTAGGTT | 58.922 | 41.667 | 0.00 | 0.00 | 36.75 | 3.50 |
1760 | 1944 | 6.218746 | AGTTGCTTCATGTTCTTTTCCAATC | 58.781 | 36.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1767 | 1951 | 6.095440 | ACTGTGTAAGTTGCTTCATGTTCTTT | 59.905 | 34.615 | 0.00 | 0.00 | 34.57 | 2.52 |
1807 | 1991 | 2.875317 | TCAACGCATTACAGTGCTTCAA | 59.125 | 40.909 | 0.00 | 0.00 | 42.88 | 2.69 |
1813 | 1997 | 1.530720 | TGCTGTCAACGCATTACAGTG | 59.469 | 47.619 | 0.00 | 0.00 | 42.10 | 3.66 |
1831 | 2015 | 1.137404 | CTAACCATTGCGGCAGTGC | 59.863 | 57.895 | 18.81 | 6.55 | 39.03 | 4.40 |
1870 | 2054 | 3.371168 | TGCAAAAACGAATCTCAAGTGC | 58.629 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
1911 | 2389 | 3.704061 | GGAGGTTGATGAGTAAGCTCTCT | 59.296 | 47.826 | 14.21 | 0.00 | 46.46 | 3.10 |
1935 | 2417 | 4.142160 | GGGCAGTCCAAAATATGAAGTTCC | 60.142 | 45.833 | 0.00 | 0.00 | 35.00 | 3.62 |
1949 | 2431 | 2.705658 | CCATATAAGTGAGGGCAGTCCA | 59.294 | 50.000 | 0.00 | 0.00 | 38.24 | 4.02 |
2004 | 2560 | 2.154462 | ACCTTTTCCTTGATGTGAGCG | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
2198 | 2906 | 9.629878 | TCTGGAAGGTAACATTGTTTTTAGTAA | 57.370 | 29.630 | 7.45 | 0.00 | 41.41 | 2.24 |
2204 | 2912 | 9.108284 | CAATTTTCTGGAAGGTAACATTGTTTT | 57.892 | 29.630 | 7.45 | 0.00 | 41.41 | 2.43 |
2229 | 2955 | 1.066303 | GAAAAACACATGGGCACGACA | 59.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
2230 | 2956 | 1.336755 | AGAAAAACACATGGGCACGAC | 59.663 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
2235 | 2961 | 5.195001 | TCTTGTTAGAAAAACACATGGGC | 57.805 | 39.130 | 0.00 | 0.00 | 0.00 | 5.36 |
2294 | 3020 | 6.832384 | TGTACTCGTCCATAGATTTAGAAGGT | 59.168 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
2389 | 3149 | 3.518303 | AGCGTTTGATCCTAGGTAAAGGT | 59.482 | 43.478 | 9.08 | 4.88 | 37.91 | 3.50 |
2394 | 3154 | 4.811969 | TCAAAGCGTTTGATCCTAGGTA | 57.188 | 40.909 | 9.08 | 0.00 | 44.21 | 3.08 |
2436 | 3212 | 9.634021 | AAAAGTTTATGGGAAATAAAAGGCAAA | 57.366 | 25.926 | 0.00 | 0.00 | 0.00 | 3.68 |
2447 | 3223 | 8.301002 | CGGAATAAGTGAAAAGTTTATGGGAAA | 58.699 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
2455 | 3231 | 4.149598 | AGCCCGGAATAAGTGAAAAGTTT | 58.850 | 39.130 | 0.73 | 0.00 | 0.00 | 2.66 |
2457 | 3233 | 3.344515 | GAGCCCGGAATAAGTGAAAAGT | 58.655 | 45.455 | 0.73 | 0.00 | 0.00 | 2.66 |
2458 | 3234 | 2.683362 | GGAGCCCGGAATAAGTGAAAAG | 59.317 | 50.000 | 0.73 | 0.00 | 0.00 | 2.27 |
2459 | 3235 | 2.718563 | GGAGCCCGGAATAAGTGAAAA | 58.281 | 47.619 | 0.73 | 0.00 | 0.00 | 2.29 |
2460 | 3236 | 1.406341 | CGGAGCCCGGAATAAGTGAAA | 60.406 | 52.381 | 0.73 | 0.00 | 44.15 | 2.69 |
2461 | 3237 | 0.177141 | CGGAGCCCGGAATAAGTGAA | 59.823 | 55.000 | 0.73 | 0.00 | 44.15 | 3.18 |
2463 | 3239 | 4.438346 | CGGAGCCCGGAATAAGTG | 57.562 | 61.111 | 0.73 | 0.00 | 44.15 | 3.16 |
2490 | 3268 | 4.522789 | GGGGAAATAAAGTGAAAGTGCTCA | 59.477 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2492 | 3270 | 4.740902 | AGGGGAAATAAAGTGAAAGTGCT | 58.259 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
2493 | 3271 | 5.243954 | AGAAGGGGAAATAAAGTGAAAGTGC | 59.756 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2495 | 3273 | 6.373759 | ACAGAAGGGGAAATAAAGTGAAAGT | 58.626 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2496 | 3274 | 6.901081 | ACAGAAGGGGAAATAAAGTGAAAG | 57.099 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
2497 | 3275 | 8.802267 | CAATACAGAAGGGGAAATAAAGTGAAA | 58.198 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2511 | 3289 | 4.487714 | TTAGCCACTCAATACAGAAGGG | 57.512 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
2524 | 3302 | 2.614829 | ATCGCCGTTATTTAGCCACT | 57.385 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2606 | 3859 | 2.620115 | ACGTCGAAAGTTGACCAGAGTA | 59.380 | 45.455 | 0.00 | 0.00 | 32.68 | 2.59 |
2609 | 3862 | 2.589798 | AACGTCGAAAGTTGACCAGA | 57.410 | 45.000 | 0.00 | 0.00 | 32.68 | 3.86 |
2617 | 3900 | 2.251642 | GGGCAGCAACGTCGAAAGT | 61.252 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
2636 | 3919 | 2.025155 | GACCAGAGAAGGCGAGTCATA | 58.975 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
2644 | 3927 | 5.491982 | TCATCTTTTAAGACCAGAGAAGGC | 58.508 | 41.667 | 0.00 | 0.00 | 37.98 | 4.35 |
2704 | 3987 | 1.079127 | CCGGTTCTGATTCGTGGCT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
2779 | 4062 | 7.038048 | ACTAATACTCACTTAAACTTACCGGC | 58.962 | 38.462 | 0.00 | 0.00 | 0.00 | 6.13 |
2781 | 4064 | 9.630098 | TGAACTAATACTCACTTAAACTTACCG | 57.370 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2808 | 4093 | 1.502231 | GCGAGCAATCGATACCACAT | 58.498 | 50.000 | 0.00 | 0.00 | 34.64 | 3.21 |
2936 | 4222 | 3.687698 | TGATCAGTGTCATGATTGCACAG | 59.312 | 43.478 | 15.10 | 8.75 | 40.02 | 3.66 |
2960 | 4246 | 9.537192 | CCTACAAACACGTCTTATATTTGGATA | 57.463 | 33.333 | 0.00 | 0.00 | 35.12 | 2.59 |
2961 | 4247 | 7.012044 | GCCTACAAACACGTCTTATATTTGGAT | 59.988 | 37.037 | 0.00 | 0.00 | 35.12 | 3.41 |
2962 | 4248 | 6.314400 | GCCTACAAACACGTCTTATATTTGGA | 59.686 | 38.462 | 0.00 | 0.00 | 35.12 | 3.53 |
2976 | 4272 | 8.220755 | TCCATATCAAATTAGCCTACAAACAC | 57.779 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
2986 | 4282 | 6.120507 | AGAGTCCCTCCATATCAAATTAGC | 57.879 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
2998 | 4294 | 7.939781 | AGGAAAAATAAAATAGAGTCCCTCCA | 58.060 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
3026 | 4322 | 9.409312 | TGCAATGTACATCTAATGAAAAACAAG | 57.591 | 29.630 | 9.23 | 0.00 | 0.00 | 3.16 |
3034 | 4330 | 5.406477 | GCTCGATGCAATGTACATCTAATGA | 59.594 | 40.000 | 9.23 | 3.04 | 41.45 | 2.57 |
3048 | 4344 | 6.795098 | TTTTAAGAAAGTAGCTCGATGCAA | 57.205 | 33.333 | 9.09 | 0.00 | 45.94 | 4.08 |
3050 | 4346 | 6.520104 | GTGTTTTTAAGAAAGTAGCTCGATGC | 59.480 | 38.462 | 0.00 | 0.00 | 43.29 | 3.91 |
3056 | 4352 | 8.618677 | GGTAAGTGTGTTTTTAAGAAAGTAGCT | 58.381 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
3073 | 4369 | 4.180817 | TCATAGTCGCATTGGTAAGTGTG | 58.819 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
3079 | 4377 | 3.728076 | GACCTCATAGTCGCATTGGTA | 57.272 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
3093 | 4391 | 2.211250 | ACCTTACTAGTGCGACCTCA | 57.789 | 50.000 | 5.39 | 0.00 | 0.00 | 3.86 |
3095 | 4393 | 2.373224 | GGTACCTTACTAGTGCGACCT | 58.627 | 52.381 | 5.39 | 0.00 | 0.00 | 3.85 |
3111 | 4409 | 2.158928 | TGTGGGTAATATGCACGGGTAC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3112 | 4410 | 2.117051 | TGTGGGTAATATGCACGGGTA | 58.883 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
3113 | 4411 | 0.913205 | TGTGGGTAATATGCACGGGT | 59.087 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3114 | 4412 | 2.045561 | TTGTGGGTAATATGCACGGG | 57.954 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3115 | 4413 | 4.647424 | ATTTTGTGGGTAATATGCACGG | 57.353 | 40.909 | 0.00 | 0.00 | 0.00 | 4.94 |
3116 | 4414 | 5.066634 | TGGTATTTTGTGGGTAATATGCACG | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3117 | 4415 | 6.458232 | TGGTATTTTGTGGGTAATATGCAC | 57.542 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
3118 | 4416 | 6.836007 | TGATGGTATTTTGTGGGTAATATGCA | 59.164 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
3119 | 4417 | 7.145323 | GTGATGGTATTTTGTGGGTAATATGC | 58.855 | 38.462 | 0.00 | 0.00 | 0.00 | 3.14 |
3120 | 4418 | 7.286546 | TGGTGATGGTATTTTGTGGGTAATATG | 59.713 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
3121 | 4419 | 7.358263 | TGGTGATGGTATTTTGTGGGTAATAT | 58.642 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
3122 | 4420 | 6.732487 | TGGTGATGGTATTTTGTGGGTAATA | 58.268 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
3123 | 4421 | 5.584913 | TGGTGATGGTATTTTGTGGGTAAT | 58.415 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
3124 | 4422 | 4.999310 | TGGTGATGGTATTTTGTGGGTAA | 58.001 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
3125 | 4423 | 4.659529 | TGGTGATGGTATTTTGTGGGTA | 57.340 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
3126 | 4424 | 3.534357 | TGGTGATGGTATTTTGTGGGT | 57.466 | 42.857 | 0.00 | 0.00 | 0.00 | 4.51 |
3127 | 4425 | 4.465660 | TGAATGGTGATGGTATTTTGTGGG | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
3128 | 4426 | 5.653507 | CTGAATGGTGATGGTATTTTGTGG | 58.346 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3129 | 4427 | 5.104374 | GCTGAATGGTGATGGTATTTTGTG | 58.896 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
3130 | 4428 | 4.771577 | TGCTGAATGGTGATGGTATTTTGT | 59.228 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
3131 | 4429 | 5.327616 | TGCTGAATGGTGATGGTATTTTG | 57.672 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
3132 | 4430 | 5.999205 | TTGCTGAATGGTGATGGTATTTT | 57.001 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
3133 | 4431 | 7.844493 | ATATTGCTGAATGGTGATGGTATTT | 57.156 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3134 | 4432 | 7.844493 | AATATTGCTGAATGGTGATGGTATT | 57.156 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3135 | 4433 | 7.844493 | AAATATTGCTGAATGGTGATGGTAT | 57.156 | 32.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3136 | 4434 | 7.777440 | TGTAAATATTGCTGAATGGTGATGGTA | 59.223 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
3137 | 4435 | 6.606796 | TGTAAATATTGCTGAATGGTGATGGT | 59.393 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
3138 | 4436 | 7.013559 | TCTGTAAATATTGCTGAATGGTGATGG | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3139 | 4437 | 7.859377 | GTCTGTAAATATTGCTGAATGGTGATG | 59.141 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
3140 | 4438 | 7.776969 | AGTCTGTAAATATTGCTGAATGGTGAT | 59.223 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3141 | 4439 | 7.112122 | AGTCTGTAAATATTGCTGAATGGTGA | 58.888 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
3142 | 4440 | 7.281774 | AGAGTCTGTAAATATTGCTGAATGGTG | 59.718 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
3143 | 4441 | 7.341805 | AGAGTCTGTAAATATTGCTGAATGGT | 58.658 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
3144 | 4442 | 7.798596 | AGAGTCTGTAAATATTGCTGAATGG | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3160 | 4458 | 7.863375 | GCTCGATTTGTACAATATAGAGTCTGT | 59.137 | 37.037 | 24.18 | 0.00 | 0.00 | 3.41 |
3161 | 4459 | 8.079203 | AGCTCGATTTGTACAATATAGAGTCTG | 58.921 | 37.037 | 24.18 | 12.58 | 0.00 | 3.51 |
3162 | 4460 | 8.172352 | AGCTCGATTTGTACAATATAGAGTCT | 57.828 | 34.615 | 24.18 | 20.82 | 0.00 | 3.24 |
3163 | 4461 | 8.804688 | AAGCTCGATTTGTACAATATAGAGTC | 57.195 | 34.615 | 24.18 | 19.83 | 0.00 | 3.36 |
3164 | 4462 | 8.414003 | TGAAGCTCGATTTGTACAATATAGAGT | 58.586 | 33.333 | 24.18 | 15.21 | 0.00 | 3.24 |
3165 | 4463 | 8.803201 | TGAAGCTCGATTTGTACAATATAGAG | 57.197 | 34.615 | 21.98 | 21.98 | 0.00 | 2.43 |
3166 | 4464 | 9.764363 | AATGAAGCTCGATTTGTACAATATAGA | 57.236 | 29.630 | 9.56 | 10.26 | 0.00 | 1.98 |
3169 | 4467 | 8.892723 | TCAAATGAAGCTCGATTTGTACAATAT | 58.107 | 29.630 | 21.22 | 6.09 | 39.54 | 1.28 |
3170 | 4468 | 8.262715 | TCAAATGAAGCTCGATTTGTACAATA | 57.737 | 30.769 | 21.22 | 1.09 | 39.54 | 1.90 |
3171 | 4469 | 7.144722 | TCAAATGAAGCTCGATTTGTACAAT | 57.855 | 32.000 | 21.22 | 0.00 | 39.54 | 2.71 |
3172 | 4470 | 6.552859 | TCAAATGAAGCTCGATTTGTACAA | 57.447 | 33.333 | 21.22 | 3.59 | 39.54 | 2.41 |
3173 | 4471 | 6.741992 | ATCAAATGAAGCTCGATTTGTACA | 57.258 | 33.333 | 21.22 | 0.00 | 39.54 | 2.90 |
3174 | 4472 | 8.452989 | AAAATCAAATGAAGCTCGATTTGTAC | 57.547 | 30.769 | 21.22 | 0.00 | 39.54 | 2.90 |
3176 | 4474 | 9.294030 | GATAAAATCAAATGAAGCTCGATTTGT | 57.706 | 29.630 | 21.22 | 11.70 | 39.54 | 2.83 |
3177 | 4475 | 8.466799 | CGATAAAATCAAATGAAGCTCGATTTG | 58.533 | 33.333 | 18.16 | 18.16 | 39.79 | 2.32 |
3178 | 4476 | 8.397906 | TCGATAAAATCAAATGAAGCTCGATTT | 58.602 | 29.630 | 0.00 | 0.00 | 37.78 | 2.17 |
3179 | 4477 | 7.919690 | TCGATAAAATCAAATGAAGCTCGATT | 58.080 | 30.769 | 0.00 | 0.00 | 0.00 | 3.34 |
3180 | 4478 | 7.482654 | TCGATAAAATCAAATGAAGCTCGAT | 57.517 | 32.000 | 0.00 | 0.00 | 0.00 | 3.59 |
3181 | 4479 | 6.902224 | TCGATAAAATCAAATGAAGCTCGA | 57.098 | 33.333 | 0.00 | 0.00 | 0.00 | 4.04 |
3182 | 4480 | 9.310971 | CTTATCGATAAAATCAAATGAAGCTCG | 57.689 | 33.333 | 18.08 | 0.00 | 0.00 | 5.03 |
3197 | 4495 | 9.419297 | CCGAACCATCTATTTCTTATCGATAAA | 57.581 | 33.333 | 18.08 | 6.79 | 0.00 | 1.40 |
3198 | 4496 | 8.582437 | ACCGAACCATCTATTTCTTATCGATAA | 58.418 | 33.333 | 16.69 | 16.69 | 0.00 | 1.75 |
3199 | 4497 | 8.118976 | ACCGAACCATCTATTTCTTATCGATA | 57.881 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
3200 | 4498 | 6.994221 | ACCGAACCATCTATTTCTTATCGAT | 58.006 | 36.000 | 2.16 | 2.16 | 0.00 | 3.59 |
3201 | 4499 | 6.401047 | ACCGAACCATCTATTTCTTATCGA | 57.599 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
3202 | 4500 | 7.328737 | CCTAACCGAACCATCTATTTCTTATCG | 59.671 | 40.741 | 0.00 | 0.00 | 0.00 | 2.92 |
3203 | 4501 | 8.148999 | ACCTAACCGAACCATCTATTTCTTATC | 58.851 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
3204 | 4502 | 8.030913 | ACCTAACCGAACCATCTATTTCTTAT | 57.969 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
3205 | 4503 | 7.427989 | ACCTAACCGAACCATCTATTTCTTA | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3206 | 4504 | 6.309389 | ACCTAACCGAACCATCTATTTCTT | 57.691 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
3207 | 4505 | 5.952347 | ACCTAACCGAACCATCTATTTCT | 57.048 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3208 | 4506 | 5.878669 | ACAACCTAACCGAACCATCTATTTC | 59.121 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3209 | 4507 | 5.812286 | ACAACCTAACCGAACCATCTATTT | 58.188 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3210 | 4508 | 5.431179 | ACAACCTAACCGAACCATCTATT | 57.569 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
3211 | 4509 | 5.046159 | TCAACAACCTAACCGAACCATCTAT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3212 | 4510 | 4.283978 | TCAACAACCTAACCGAACCATCTA | 59.716 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
3213 | 4511 | 3.071892 | TCAACAACCTAACCGAACCATCT | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
3214 | 4512 | 3.404899 | TCAACAACCTAACCGAACCATC | 58.595 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3215 | 4513 | 3.495434 | TCAACAACCTAACCGAACCAT | 57.505 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
3216 | 4514 | 3.207778 | CTTCAACAACCTAACCGAACCA | 58.792 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
3217 | 4515 | 3.208594 | ACTTCAACAACCTAACCGAACC | 58.791 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
3218 | 4516 | 4.124970 | AGACTTCAACAACCTAACCGAAC | 58.875 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
3219 | 4517 | 4.411256 | AGACTTCAACAACCTAACCGAA | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
3220 | 4518 | 4.828939 | TCTAGACTTCAACAACCTAACCGA | 59.171 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
3221 | 4519 | 5.130292 | TCTAGACTTCAACAACCTAACCG | 57.870 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
3222 | 4520 | 6.107343 | GGATCTAGACTTCAACAACCTAACC | 58.893 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3223 | 4521 | 6.070710 | AGGGATCTAGACTTCAACAACCTAAC | 60.071 | 42.308 | 0.00 | 0.00 | 0.00 | 2.34 |
3224 | 4522 | 6.023603 | AGGGATCTAGACTTCAACAACCTAA | 58.976 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3225 | 4523 | 5.590818 | AGGGATCTAGACTTCAACAACCTA | 58.409 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
3226 | 4524 | 4.430441 | AGGGATCTAGACTTCAACAACCT | 58.570 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
3227 | 4525 | 4.828072 | AGGGATCTAGACTTCAACAACC | 57.172 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
3228 | 4526 | 6.981559 | GTCATAGGGATCTAGACTTCAACAAC | 59.018 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
3229 | 4527 | 6.667848 | TGTCATAGGGATCTAGACTTCAACAA | 59.332 | 38.462 | 0.00 | 0.00 | 31.25 | 2.83 |
3230 | 4528 | 6.096987 | GTGTCATAGGGATCTAGACTTCAACA | 59.903 | 42.308 | 0.00 | 0.00 | 31.25 | 3.33 |
3231 | 4529 | 6.461788 | GGTGTCATAGGGATCTAGACTTCAAC | 60.462 | 46.154 | 0.00 | 0.00 | 31.25 | 3.18 |
3232 | 4530 | 5.598830 | GGTGTCATAGGGATCTAGACTTCAA | 59.401 | 44.000 | 0.00 | 0.00 | 31.25 | 2.69 |
3233 | 4531 | 5.103473 | AGGTGTCATAGGGATCTAGACTTCA | 60.103 | 44.000 | 0.00 | 0.00 | 31.25 | 3.02 |
3234 | 4532 | 5.390387 | AGGTGTCATAGGGATCTAGACTTC | 58.610 | 45.833 | 0.00 | 0.00 | 31.25 | 3.01 |
3235 | 4533 | 5.411103 | AGGTGTCATAGGGATCTAGACTT | 57.589 | 43.478 | 0.00 | 0.00 | 31.25 | 3.01 |
3236 | 4534 | 5.135362 | AGAAGGTGTCATAGGGATCTAGACT | 59.865 | 44.000 | 0.00 | 0.00 | 31.25 | 3.24 |
3237 | 4535 | 5.390387 | AGAAGGTGTCATAGGGATCTAGAC | 58.610 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
3238 | 4536 | 5.671463 | AGAAGGTGTCATAGGGATCTAGA | 57.329 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3239 | 4537 | 6.307776 | TGTAGAAGGTGTCATAGGGATCTAG | 58.692 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3240 | 4538 | 6.102762 | TCTGTAGAAGGTGTCATAGGGATCTA | 59.897 | 42.308 | 0.00 | 0.00 | 0.00 | 1.98 |
3241 | 4539 | 5.103473 | TCTGTAGAAGGTGTCATAGGGATCT | 60.103 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
3242 | 4540 | 5.010213 | GTCTGTAGAAGGTGTCATAGGGATC | 59.990 | 48.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3243 | 4541 | 4.896482 | GTCTGTAGAAGGTGTCATAGGGAT | 59.104 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3244 | 4542 | 4.279145 | GTCTGTAGAAGGTGTCATAGGGA | 58.721 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
3245 | 4543 | 3.385111 | GGTCTGTAGAAGGTGTCATAGGG | 59.615 | 52.174 | 0.00 | 0.00 | 0.00 | 3.53 |
3246 | 4544 | 3.066900 | CGGTCTGTAGAAGGTGTCATAGG | 59.933 | 52.174 | 0.00 | 0.00 | 0.00 | 2.57 |
3247 | 4545 | 3.066900 | CCGGTCTGTAGAAGGTGTCATAG | 59.933 | 52.174 | 0.00 | 0.00 | 0.00 | 2.23 |
3248 | 4546 | 3.021695 | CCGGTCTGTAGAAGGTGTCATA | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3249 | 4547 | 1.825474 | CCGGTCTGTAGAAGGTGTCAT | 59.175 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3250 | 4548 | 1.202964 | TCCGGTCTGTAGAAGGTGTCA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
3251 | 4549 | 1.542492 | TCCGGTCTGTAGAAGGTGTC | 58.458 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3252 | 4550 | 2.100989 | GATCCGGTCTGTAGAAGGTGT | 58.899 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
3253 | 4551 | 1.409427 | GGATCCGGTCTGTAGAAGGTG | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
3254 | 4552 | 1.288335 | AGGATCCGGTCTGTAGAAGGT | 59.712 | 52.381 | 5.98 | 0.00 | 0.00 | 3.50 |
3255 | 4553 | 2.074729 | AGGATCCGGTCTGTAGAAGG | 57.925 | 55.000 | 5.98 | 0.00 | 0.00 | 3.46 |
3256 | 4554 | 4.399219 | TGATAGGATCCGGTCTGTAGAAG | 58.601 | 47.826 | 16.97 | 0.00 | 0.00 | 2.85 |
3257 | 4555 | 4.448720 | TGATAGGATCCGGTCTGTAGAA | 57.551 | 45.455 | 16.97 | 0.00 | 0.00 | 2.10 |
3258 | 4556 | 4.142790 | GTTGATAGGATCCGGTCTGTAGA | 58.857 | 47.826 | 16.97 | 0.00 | 0.00 | 2.59 |
3259 | 4557 | 3.256136 | GGTTGATAGGATCCGGTCTGTAG | 59.744 | 52.174 | 16.97 | 0.00 | 0.00 | 2.74 |
3260 | 4558 | 3.228453 | GGTTGATAGGATCCGGTCTGTA | 58.772 | 50.000 | 16.97 | 0.57 | 0.00 | 2.74 |
3261 | 4559 | 2.040178 | GGTTGATAGGATCCGGTCTGT | 58.960 | 52.381 | 16.97 | 0.00 | 0.00 | 3.41 |
3262 | 4560 | 1.344763 | GGGTTGATAGGATCCGGTCTG | 59.655 | 57.143 | 16.97 | 0.00 | 0.00 | 3.51 |
3263 | 4561 | 1.718280 | GGGTTGATAGGATCCGGTCT | 58.282 | 55.000 | 16.97 | 0.25 | 0.00 | 3.85 |
3264 | 4562 | 0.685660 | GGGGTTGATAGGATCCGGTC | 59.314 | 60.000 | 5.98 | 9.20 | 0.00 | 4.79 |
3265 | 4563 | 0.030501 | TGGGGTTGATAGGATCCGGT | 60.031 | 55.000 | 5.98 | 0.00 | 0.00 | 5.28 |
3266 | 4564 | 1.136828 | TTGGGGTTGATAGGATCCGG | 58.863 | 55.000 | 5.98 | 0.00 | 0.00 | 5.14 |
3267 | 4565 | 2.371841 | TGATTGGGGTTGATAGGATCCG | 59.628 | 50.000 | 5.98 | 0.00 | 0.00 | 4.18 |
3268 | 4566 | 4.338879 | CATGATTGGGGTTGATAGGATCC | 58.661 | 47.826 | 2.48 | 2.48 | 0.00 | 3.36 |
3269 | 4567 | 4.338879 | CCATGATTGGGGTTGATAGGATC | 58.661 | 47.826 | 0.00 | 0.00 | 39.56 | 3.36 |
3270 | 4568 | 3.501019 | GCCATGATTGGGGTTGATAGGAT | 60.501 | 47.826 | 0.00 | 0.00 | 43.84 | 3.24 |
3271 | 4569 | 2.158475 | GCCATGATTGGGGTTGATAGGA | 60.158 | 50.000 | 0.00 | 0.00 | 43.84 | 2.94 |
3272 | 4570 | 2.242043 | GCCATGATTGGGGTTGATAGG | 58.758 | 52.381 | 0.00 | 0.00 | 43.84 | 2.57 |
3273 | 4571 | 2.242043 | GGCCATGATTGGGGTTGATAG | 58.758 | 52.381 | 0.00 | 0.00 | 43.84 | 2.08 |
3274 | 4572 | 1.572895 | TGGCCATGATTGGGGTTGATA | 59.427 | 47.619 | 0.00 | 0.00 | 43.84 | 2.15 |
3275 | 4573 | 0.339162 | TGGCCATGATTGGGGTTGAT | 59.661 | 50.000 | 0.00 | 0.00 | 43.84 | 2.57 |
3276 | 4574 | 0.339162 | ATGGCCATGATTGGGGTTGA | 59.661 | 50.000 | 20.04 | 0.00 | 43.84 | 3.18 |
3277 | 4575 | 0.466543 | CATGGCCATGATTGGGGTTG | 59.533 | 55.000 | 37.84 | 10.72 | 43.84 | 3.77 |
3278 | 4576 | 0.691748 | CCATGGCCATGATTGGGGTT | 60.692 | 55.000 | 41.32 | 4.59 | 43.84 | 4.11 |
3279 | 4577 | 1.075076 | CCATGGCCATGATTGGGGT | 60.075 | 57.895 | 41.32 | 5.46 | 43.84 | 4.95 |
3280 | 4578 | 1.117142 | GTCCATGGCCATGATTGGGG | 61.117 | 60.000 | 41.32 | 26.16 | 43.84 | 4.96 |
3281 | 4579 | 0.105862 | AGTCCATGGCCATGATTGGG | 60.106 | 55.000 | 41.32 | 26.86 | 43.84 | 4.12 |
3282 | 4580 | 1.411246 | CAAGTCCATGGCCATGATTGG | 59.589 | 52.381 | 41.32 | 29.02 | 46.66 | 3.16 |
3283 | 4581 | 2.882927 | CAAGTCCATGGCCATGATTG | 57.117 | 50.000 | 41.32 | 33.65 | 41.20 | 2.67 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.