AutoCloner

Multiple sequence alignment - TraesCS5B01G499200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G499200	chr5B	100.000	2918	0	0	1	2918	665812459	665809542	0.000000e+00	5389.0
1	TraesCS5B01G499200	chr5B	92.708	96	5	2	699	792	140965920	140966015	1.410000e-28	137.0
2	TraesCS5B01G499200	chr5B	100.000	29	0	0	23	51	578372090	578372062	1.000000e-03	54.7
3	TraesCS5B01G499200	chr5B	100.000	29	0	0	23	51	578388408	578388380	1.000000e-03	54.7
4	TraesCS5B01G499200	chr5A	95.869	2687	57	16	1	2659	656937819	656935159	0.000000e+00	4298.0
5	TraesCS5B01G499200	chr5A	87.069	116	8	7	694	806	429750534	429750423	1.100000e-24	124.0
6	TraesCS5B01G499200	chr5A	95.000	40	2	0	20	59	169297880	169297919	2.430000e-06	63.9
7	TraesCS5B01G499200	chr3D	92.189	1421	55	29	794	2184	108571122	108572516	0.000000e+00	1958.0
8	TraesCS5B01G499200	chr3D	92.944	411	20	6	302	708	108570713	108571118	9.010000e-165	590.0
9	TraesCS5B01G499200	chr3D	90.385	104	7	3	701	803	429097502	429097603	1.820000e-27	134.0
10	TraesCS5B01G499200	chr3B	96.304	974	31	2	1059	2032	160138195	160139163	0.000000e+00	1594.0
11	TraesCS5B01G499200	chr3B	89.940	497	26	11	226	709	160135571	160136056	1.150000e-173	619.0
12	TraesCS5B01G499200	chr3B	77.972	799	115	43	2159	2918	160139733	160140509	7.420000e-121	444.0
13	TraesCS5B01G499200	chr3B	90.732	205	9	3	867	1062	160136214	160136417	6.200000e-67	265.0
14	TraesCS5B01G499200	chr3B	92.771	83	6	0	789	871	160136054	160136136	1.420000e-23	121.0
15	TraesCS5B01G499200	chr1A	88.611	1159	110	14	804	1947	24944917	24943766	0.000000e+00	1389.0
16	TraesCS5B01G499200	chr1D	87.554	1149	120	14	812	1947	23999003	23997865	0.000000e+00	1308.0
17	TraesCS5B01G499200	chr1D	86.942	1187	120	18	801	1974	24125916	24124752	0.000000e+00	1301.0
18	TraesCS5B01G499200	chr1D	96.875	32	1	0	20	51	256999907	256999938	1.000000e-03	54.7
19	TraesCS5B01G499200	chr1B	87.105	791	83	11	835	1614	39656580	39655798	0.000000e+00	878.0
20	TraesCS5B01G499200	chr1B	91.617	167	14	0	1448	1614	39582056	39582222	6.290000e-57	231.0
21	TraesCS5B01G499200	chr1B	96.970	33	1	0	23	55	268799918	268799950	4.060000e-04	56.5
22	TraesCS5B01G499200	chr1B	94.444	36	1	1	20	54	507308264	507308299	1.000000e-03	54.7
23	TraesCS5B01G499200	chr4D	93.684	95	5	1	699	792	245478431	245478337	1.090000e-29	141.0
24	TraesCS5B01G499200	chr4D	93.684	95	5	1	699	792	282079939	282080033	1.090000e-29	141.0
25	TraesCS5B01G499200	chr5D	92.708	96	5	2	699	792	128577578	128577673	1.410000e-28	137.0
26	TraesCS5B01G499200	chr5D	100.000	29	0	0	23	51	471051605	471051577	1.000000e-03	54.7
27	TraesCS5B01G499200	chr7B	89.815	108	7	4	697	802	348195799	348195904	5.070000e-28	135.0
28	TraesCS5B01G499200	chr7B	96.875	32	1	0	20	51	559531989	559532020	1.000000e-03	54.7
29	TraesCS5B01G499200	chr2B	89.623	106	8	3	705	808	198755151	198755047	6.560000e-27	132.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G499200	chr5B	665809542	665812459	2917	True	5389.0	5389	100.0000	1	2918	1	chr5B.!!$R3	2917
1	TraesCS5B01G499200	chr5A	656935159	656937819	2660	True	4298.0	4298	95.8690	1	2659	1	chr5A.!!$R2	2658
2	TraesCS5B01G499200	chr3D	108570713	108572516	1803	False	1274.0	1958	92.5665	302	2184	2	chr3D.!!$F2	1882
3	TraesCS5B01G499200	chr3B	160135571	160140509	4938	False	608.6	1594	89.5438	226	2918	5	chr3B.!!$F1	2692
4	TraesCS5B01G499200	chr1A	24943766	24944917	1151	True	1389.0	1389	88.6110	804	1947	1	chr1A.!!$R1	1143
5	TraesCS5B01G499200	chr1D	23997865	23999003	1138	True	1308.0	1308	87.5540	812	1947	1	chr1D.!!$R1	1135
6	TraesCS5B01G499200	chr1D	24124752	24125916	1164	True	1301.0	1301	86.9420	801	1974	1	chr1D.!!$R2	1173
7	TraesCS5B01G499200	chr1B	39655798	39656580	782	True	878.0	878	87.1050	835	1614	1	chr1B.!!$R1	779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
113	114	2.021457	AGTAAACAGCAGCGGTTTGTT	58.979	42.857	27.79	15.72	38.77	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1935	3851	1.865865	TAGCGGTAAATGCAGCTAGC	58.134	50.0	6.62	6.62	40.22	3.42	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
86	87	6.970613	CGGCCTATTGTGGTAGTTTTTAATTC	59.029	38.462	0.00	0.00	0.00	2.17
105	106	8.964420	TTAATTCAATTGTAGTAAACAGCAGC	57.036	30.769	5.13	0.00	39.87	5.25
113	114	2.021457	AGTAAACAGCAGCGGTTTGTT	58.979	42.857	27.79	15.72	38.77	2.83
139	140	6.292811	GGTTGCAACAATAAGTGGACAATTTG	60.293	38.462	29.55	0.00	0.00	2.32
154	155	6.202379	TGGACAATTTGTTGTTGCATGTTATG	59.798	34.615	3.08	0.00	34.90	1.90
256	257	7.823149	AATTCTTAATTGCTGTGAAAGATGC	57.177	32.000	0.00	0.00	0.00	3.91
326	342	9.862371	CAAGTGAACAATATCTAGTACTGAACT	57.138	33.333	5.39	0.00	42.62	3.01
1127	3031	1.331756	GATCATTGGCGTAAGTGGCAG	59.668	52.381	0.00	0.00	45.81	4.85
1935	3851	4.503007	CCATAGATGTTTCGTGTTCTACCG	59.497	45.833	0.00	0.00	0.00	4.02
1959	3877	4.271696	AGCTGCATTTACCGCTATCATA	57.728	40.909	1.02	0.00	0.00	2.15
2009	3928	7.709269	TTATCTGTATGGCTTCGATTACAAC	57.291	36.000	0.00	0.00	0.00	3.32
2018	3937	4.694037	GGCTTCGATTACAACTGGTAACTT	59.306	41.667	0.00	0.00	44.36	2.66
2029	3948	2.370849	ACTGGTAACTTCCCGTGATTGT	59.629	45.455	0.00	0.00	37.61	2.71
2030	3949	3.181448	ACTGGTAACTTCCCGTGATTGTT	60.181	43.478	0.00	0.00	37.61	2.83
2031	3950	4.040706	ACTGGTAACTTCCCGTGATTGTTA	59.959	41.667	0.00	0.00	37.61	2.41
2032	3951	4.317488	TGGTAACTTCCCGTGATTGTTAC	58.683	43.478	12.49	12.49	38.57	2.50
2092	4036	8.490355	GTCAAAAAGCAGATAATTTGGAACTTG	58.510	33.333	0.00	0.00	34.39	3.16
2123	4465	5.408880	TTGGACTCATGTATGGTTACGAA	57.591	39.130	0.00	0.00	0.00	3.85
2150	4492	4.340246	CTGGCCAGGCAGCTGTGA	62.340	66.667	26.14	0.00	0.00	3.58
2151	4493	3.640257	CTGGCCAGGCAGCTGTGAT	62.640	63.158	26.14	0.00	0.00	3.06
2153	4495	1.980772	GGCCAGGCAGCTGTGATTT	60.981	57.895	15.19	0.00	0.00	2.17
2154	4496	0.680921	GGCCAGGCAGCTGTGATTTA	60.681	55.000	15.19	0.00	0.00	1.40
2164	4535	7.274250	CAGGCAGCTGTGATTTAAATACTTTTC	59.726	37.037	16.64	0.00	0.00	2.29
2196	4567	1.338020	CAAACCTGGCCTGAGACAAAC	59.662	52.381	11.88	0.00	0.00	2.93
2202	4573	2.023673	TGGCCTGAGACAAACACTTTG	58.976	47.619	3.32	0.00	45.95	2.77
2246	4617	0.743097	GCTGAGTTGCATCCCATTCC	59.257	55.000	0.00	0.00	0.00	3.01
2316	4709	3.498927	GCTAATCAGCTGCATGTTGTT	57.501	42.857	9.47	0.00	44.93	2.83
2317	4710	3.176708	GCTAATCAGCTGCATGTTGTTG	58.823	45.455	9.47	0.00	44.93	3.33
2318	4711	2.074547	AATCAGCTGCATGTTGTTGC	57.925	45.000	9.47	0.00	43.07	4.17
2319	4712	0.245539	ATCAGCTGCATGTTGTTGCC	59.754	50.000	9.47	0.00	42.06	4.52
2320	4713	1.108132	TCAGCTGCATGTTGTTGCCA	61.108	50.000	9.47	0.00	42.06	4.92
2331	4724	0.888736	TTGTTGCCAGGTCATGTCCG	60.889	55.000	3.20	0.00	0.00	4.79
2447	4840	0.319040	TGTGAGTGCTTGCTCTCGAC	60.319	55.000	16.47	15.22	36.51	4.20
2554	4971	4.154918	CGATCTTCTGGTTCTTGGGAAAAG	59.845	45.833	0.00	0.00	32.81	2.27
2561	4978	4.541705	TGGTTCTTGGGAAAAGTTGATCA	58.458	39.130	0.00	0.00	32.81	2.92
2670	5090	3.723348	GCGCGAACAACCTCACCC	61.723	66.667	12.10	0.00	0.00	4.61
2676	5096	1.797025	GAACAACCTCACCCTCTTCG	58.203	55.000	0.00	0.00	0.00	3.79
2679	5099	1.536662	AACCTCACCCTCTTCGGCT	60.537	57.895	0.00	0.00	0.00	5.52
2680	5100	1.831652	AACCTCACCCTCTTCGGCTG	61.832	60.000	0.00	0.00	0.00	4.85
2683	5103	2.435586	CACCCTCTTCGGCTGCAG	60.436	66.667	10.11	10.11	0.00	4.41
2735	5155	0.179073	CCATGGAGTTCGGCACCTAG	60.179	60.000	5.56	0.00	0.00	3.02
2739	5159	1.226717	GAGTTCGGCACCTAGCTCG	60.227	63.158	0.00	0.00	44.79	5.03
2786	5206	1.153647	CGGCATAGGCGTTCACTCA	60.154	57.895	4.71	0.00	46.33	3.41
2790	5210	2.279741	GCATAGGCGTTCACTCAATCA	58.720	47.619	0.00	0.00	0.00	2.57
2794	5214	2.146342	AGGCGTTCACTCAATCAACTG	58.854	47.619	0.00	0.00	0.00	3.16
2801	5221	2.027192	TCACTCAATCAACTGTAGGGCC	60.027	50.000	0.00	0.00	0.00	5.80
2803	5223	3.197766	CACTCAATCAACTGTAGGGCCTA	59.802	47.826	9.81	9.81	0.00	3.93
2806	5226	3.055385	TCAATCAACTGTAGGGCCTACAC	60.055	47.826	36.53	19.94	41.33	2.90
2811	5231	0.179145	CTGTAGGGCCTACACGAACG	60.179	60.000	36.53	24.57	41.33	3.95
2812	5232	0.895100	TGTAGGGCCTACACGAACGT	60.895	55.000	36.53	0.64	41.33	3.99
2822	5242	3.319904	ACGAACGTGAGCAAGTGC	58.680	55.556	0.00	0.00	42.49	4.40
2823	5243	2.244651	ACGAACGTGAGCAAGTGCC	61.245	57.895	0.00	0.00	43.38	5.01
2824	5244	1.956170	CGAACGTGAGCAAGTGCCT	60.956	57.895	0.00	0.00	43.38	4.75
2825	5245	1.571460	GAACGTGAGCAAGTGCCTG	59.429	57.895	0.00	0.00	43.38	4.85
2826	5246	1.845809	GAACGTGAGCAAGTGCCTGG	61.846	60.000	0.00	0.00	43.38	4.45
2827	5247	2.281070	CGTGAGCAAGTGCCTGGT	60.281	61.111	0.00	0.00	43.38	4.00
2828	5248	2.320587	CGTGAGCAAGTGCCTGGTC	61.321	63.158	0.00	3.52	43.38	4.02
2829	5249	1.072159	GTGAGCAAGTGCCTGGTCT	59.928	57.895	0.00	0.00	42.93	3.85
2830	5250	0.952984	GTGAGCAAGTGCCTGGTCTC	60.953	60.000	0.00	4.43	42.93	3.36
2836	5256	1.903877	AAGTGCCTGGTCTCCGATGG	61.904	60.000	0.00	0.00	0.00	3.51
2866	5286	4.423625	AGACTTGGACTGCTTGTTTACT	57.576	40.909	0.00	0.00	0.00	2.24
2867	5287	4.781934	AGACTTGGACTGCTTGTTTACTT	58.218	39.130	0.00	0.00	0.00	2.24
2885	5305	3.566523	ACTTGACGCGAACAAAAACAAA	58.433	36.364	15.93	0.00	0.00	2.83
2887	5307	2.251893	TGACGCGAACAAAAACAAACC	58.748	42.857	15.93	0.00	0.00	3.27
2896	5316	6.619660	GCGAACAAAAACAAACCAGTCAATTT	60.620	34.615	0.00	0.00	0.00	1.82
2911	5333	8.638873	ACCAGTCAATTTTTAAAAAGGACCTAG	58.361	33.333	27.57	22.10	37.09	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	5.075858	TCCGTTCCATAATACTTGTCGTT	57.924	39.130	0.00	0.00	0.00	3.85
86	87	3.188460	ACCGCTGCTGTTTACTACAATTG	59.812	43.478	3.24	3.24	36.02	2.32
101	102	2.237066	GCAACCAACAAACCGCTGC	61.237	57.895	0.00	0.00	0.00	5.25
113	114	3.291584	TGTCCACTTATTGTTGCAACCA	58.708	40.909	26.14	16.65	0.00	3.67
139	140	8.574196	AAAGTAGAAACATAACATGCAACAAC	57.426	30.769	0.00	0.00	0.00	3.32
154	155	9.148104	CAGTTAGGTGGTGTATAAAGTAGAAAC	57.852	37.037	0.00	0.00	0.00	2.78
256	257	1.066858	ACAGTGGCACTAGAACGATGG	60.067	52.381	21.59	7.06	0.00	3.51
326	342	3.880490	ACGACAAAACAATGTCCAGCTAA	59.120	39.130	0.00	0.00	45.51	3.09
600	626	7.041167	GCTACCAGCATATCAAATGTCAATACA	60.041	37.037	0.00	0.00	41.89	2.29
762	789	7.434492	TCCCTCTGTAAAGAAATATAAGAGCG	58.566	38.462	0.00	0.00	0.00	5.03
772	799	6.742559	ACACTTACTCCCTCTGTAAAGAAA	57.257	37.500	0.00	0.00	30.72	2.52
1127	3031	2.126965	CAAGTTGCTGCTGCGAGC	60.127	61.111	11.21	14.42	43.34	5.03
1935	3851	1.865865	TAGCGGTAAATGCAGCTAGC	58.134	50.000	6.62	6.62	40.22	3.42
2009	3928	3.053831	ACAATCACGGGAAGTTACCAG	57.946	47.619	4.63	0.00	0.00	4.00
2018	3937	2.835764	AGCCTAAGTAACAATCACGGGA	59.164	45.455	0.00	0.00	0.00	5.14
2123	4465	1.228675	CCTGGCCAGGCAAAAGTCT	60.229	57.895	38.39	0.00	42.44	3.24
2151	4493	9.436957	TGCAACCAAACAAGAAAAGTATTTAAA	57.563	25.926	0.00	0.00	37.28	1.52
2153	4495	9.436957	TTTGCAACCAAACAAGAAAAGTATTTA	57.563	25.926	0.00	0.00	34.84	1.40
2154	4496	7.913674	TTGCAACCAAACAAGAAAAGTATTT	57.086	28.000	0.00	0.00	42.41	1.40
2246	4617	1.832912	GGTCTGGTCTAGGCCCATG	59.167	63.158	11.80	1.09	45.93	3.66
2315	4708	1.773856	TTCCGGACATGACCTGGCAA	61.774	55.000	1.83	8.50	32.82	4.52
2316	4709	2.220586	TTCCGGACATGACCTGGCA	61.221	57.895	1.83	3.41	32.82	4.92
2317	4710	1.745489	GTTCCGGACATGACCTGGC	60.745	63.158	1.83	0.05	0.00	4.85
2318	4711	0.324943	AAGTTCCGGACATGACCTGG	59.675	55.000	1.83	14.00	0.00	4.45
2319	4712	1.001974	TGAAGTTCCGGACATGACCTG	59.998	52.381	1.83	5.98	0.00	4.00
2320	4713	1.276421	CTGAAGTTCCGGACATGACCT	59.724	52.381	1.83	0.00	0.00	3.85
2375	4768	2.262915	CCTCACCTGACGACCTGC	59.737	66.667	0.00	0.00	0.00	4.85
2376	4769	2.099652	TTGCCTCACCTGACGACCTG	62.100	60.000	0.00	0.00	0.00	4.00
2447	4840	6.959701	GCTGTAATTTAATCGCAGCTTTAG	57.040	37.500	19.12	0.00	46.20	1.85
2489	4906	3.578688	CCAAACTATCAGCAAACTTGGC	58.421	45.455	0.00	0.00	0.00	4.52
2529	4946	2.497675	TCCCAAGAACCAGAAGATCGAG	59.502	50.000	0.00	0.00	0.00	4.04
2554	4971	6.304356	TGAGACACAAAATCAGTGATCAAC	57.696	37.500	5.98	0.00	40.16	3.18
2561	4978	6.769822	ACAAGAAGATGAGACACAAAATCAGT	59.230	34.615	0.00	0.00	0.00	3.41
2638	5058	2.556287	CGCGCAGGTCTGTTTTCC	59.444	61.111	8.75	0.00	0.00	3.13
2670	5090	2.684843	GGTTGCTGCAGCCGAAGAG	61.685	63.158	34.64	0.00	41.18	2.85
2679	5099	2.282391	ATTGAGGCGGTTGCTGCA	60.282	55.556	0.00	0.00	42.25	4.41
2680	5100	2.180017	CATTGAGGCGGTTGCTGC	59.820	61.111	0.00	0.00	42.25	5.25
2712	5132	2.203070	GCCGAACTCCATGGCGAT	60.203	61.111	9.17	0.00	39.30	4.58
2720	5140	1.142097	GAGCTAGGTGCCGAACTCC	59.858	63.158	0.00	0.00	44.23	3.85
2772	5192	3.935203	CAGTTGATTGAGTGAACGCCTAT	59.065	43.478	0.00	0.00	0.00	2.57
2780	5200	2.027192	GGCCCTACAGTTGATTGAGTGA	60.027	50.000	0.00	0.00	0.00	3.41
2781	5201	2.026822	AGGCCCTACAGTTGATTGAGTG	60.027	50.000	0.00	0.00	0.00	3.51
2786	5206	2.093658	CGTGTAGGCCCTACAGTTGATT	60.094	50.000	23.82	0.00	45.88	2.57
2790	5210	1.274447	GTTCGTGTAGGCCCTACAGTT	59.726	52.381	23.82	0.00	45.88	3.16
2794	5214	0.457337	CACGTTCGTGTAGGCCCTAC	60.457	60.000	14.26	14.26	37.46	3.18
2801	5221	1.452025	CACTTGCTCACGTTCGTGTAG	59.548	52.381	21.61	17.86	37.40	2.74
2803	5223	1.762222	GCACTTGCTCACGTTCGTGT	61.762	55.000	21.61	2.23	37.40	4.49
2806	5226	1.956170	AGGCACTTGCTCACGTTCG	60.956	57.895	0.38	0.00	41.70	3.95
2811	5231	0.952984	GAGACCAGGCACTTGCTCAC	60.953	60.000	0.38	0.00	41.70	3.51
2812	5232	1.372683	GAGACCAGGCACTTGCTCA	59.627	57.895	0.38	0.00	41.70	4.26
2813	5233	1.376553	GGAGACCAGGCACTTGCTC	60.377	63.158	0.38	0.00	41.70	4.26
2815	5235	2.527951	ATCGGAGACCAGGCACTTGC	62.528	60.000	0.00	0.00	42.51	4.01
2817	5237	1.599047	CATCGGAGACCAGGCACTT	59.401	57.895	0.00	0.00	42.51	3.16
2819	5239	2.187946	CCATCGGAGACCAGGCAC	59.812	66.667	0.00	0.00	42.51	5.01
2820	5240	3.785859	GCCATCGGAGACCAGGCA	61.786	66.667	0.00	0.00	46.91	4.75
2822	5242	2.187946	GTGCCATCGGAGACCAGG	59.812	66.667	0.00	0.00	42.51	4.45
2823	5243	2.187946	GGTGCCATCGGAGACCAG	59.812	66.667	0.00	0.00	42.51	4.00
2824	5244	2.606213	TGGTGCCATCGGAGACCA	60.606	61.111	0.00	0.00	42.51	4.02
2825	5245	2.125106	GTGGTGCCATCGGAGACC	60.125	66.667	0.00	0.00	42.51	3.85
2826	5246	2.125106	GGTGGTGCCATCGGAGAC	60.125	66.667	0.00	0.00	42.51	3.36
2827	5247	2.606213	TGGTGGTGCCATCGGAGA	60.606	61.111	0.00	0.00	43.61	3.71
2845	5265	4.423625	AGTAAACAAGCAGTCCAAGTCT	57.576	40.909	0.00	0.00	0.00	3.24
2848	5268	4.552767	CGTCAAGTAAACAAGCAGTCCAAG	60.553	45.833	0.00	0.00	0.00	3.61
2866	5286	2.662156	GGTTTGTTTTTGTTCGCGTCAA	59.338	40.909	5.77	10.62	0.00	3.18
2867	5287	2.251893	GGTTTGTTTTTGTTCGCGTCA	58.748	42.857	5.77	4.13	0.00	4.35
2885	5305	7.432148	AGGTCCTTTTTAAAAATTGACTGGT	57.568	32.000	26.24	16.67	33.57	4.00
2887	5307	9.678941	GACTAGGTCCTTTTTAAAAATTGACTG	57.321	33.333	26.24	21.33	33.57	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.