Multiple sequence alignment - TraesCS5B01G498000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G498000 chr5B 100.000 6213 0 0 1 6213 664955139 664948927 0.000000e+00 11474
1 TraesCS5B01G498000 chr5B 88.448 580 57 6 5587 6161 664682975 664683549 0.000000e+00 691
2 TraesCS5B01G498000 chr5B 90.780 282 23 2 462 743 657596031 657596309 2.110000e-99 374
3 TraesCS5B01G498000 chr5B 87.382 317 36 4 437 751 650165698 650165384 1.650000e-95 361
4 TraesCS5B01G498000 chr5B 94.624 93 5 0 3482 3574 664951566 664951658 1.810000e-30 145
5 TraesCS5B01G498000 chr5B 93.478 92 6 0 3482 3573 17982605 17982696 3.020000e-28 137
6 TraesCS5B01G498000 chr5B 79.545 176 24 7 1 164 55081 55256 1.420000e-21 115
7 TraesCS5B01G498000 chr5D 96.907 2425 65 6 3743 6160 528145871 528143450 0.000000e+00 4054
8 TraesCS5B01G498000 chr5D 98.033 1830 28 4 1759 3587 528147682 528145860 0.000000e+00 3173
9 TraesCS5B01G498000 chr5D 93.101 1406 59 17 354 1759 528149102 528147735 0.000000e+00 2025
10 TraesCS5B01G498000 chr5D 87.695 577 67 3 5587 6161 527905137 527905711 0.000000e+00 669
11 TraesCS5B01G498000 chr5D 84.794 388 41 14 383 761 499619505 499619127 2.110000e-99 374
12 TraesCS5B01G498000 chr5D 86.624 314 38 4 437 748 517672290 517671979 1.660000e-90 344
13 TraesCS5B01G498000 chr5A 96.370 2397 80 4 3771 6160 655993943 655991547 0.000000e+00 3938
14 TraesCS5B01G498000 chr5A 96.598 1852 37 10 1759 3587 655995932 655994084 0.000000e+00 3048
15 TraesCS5B01G498000 chr5A 91.782 864 49 12 900 1746 655996852 655995994 0.000000e+00 1182
16 TraesCS5B01G498000 chr5A 87.223 587 65 7 5580 6161 655461807 655462388 0.000000e+00 660
17 TraesCS5B01G498000 chr5A 89.899 297 25 4 458 753 649710271 649710563 1.630000e-100 377
18 TraesCS5B01G498000 chr5A 89.597 298 27 4 468 762 655997200 655996904 5.880000e-100 375
19 TraesCS5B01G498000 chr5A 87.107 318 31 9 436 751 623929068 623928759 9.910000e-93 351
20 TraesCS5B01G498000 chr5A 97.633 169 3 1 3574 3742 547796317 547796484 7.880000e-74 289
21 TraesCS5B01G498000 chr5A 94.030 67 4 0 354 420 655997281 655997215 1.100000e-17 102
22 TraesCS5B01G498000 chrUn 87.689 528 61 3 5636 6161 263458926 263458401 4.120000e-171 612
23 TraesCS5B01G498000 chrUn 100.000 160 0 0 3583 3742 48495525 48495366 4.710000e-76 296
24 TraesCS5B01G498000 chrUn 100.000 160 0 0 3583 3742 235110848 235110689 4.710000e-76 296
25 TraesCS5B01G498000 chrUn 100.000 160 0 0 3583 3742 386426511 386426352 4.710000e-76 296
26 TraesCS5B01G498000 chrUn 97.368 152 4 0 4675 4826 147292295 147292144 6.180000e-65 259
27 TraesCS5B01G498000 chrUn 97.368 152 4 0 4672 4823 436597950 436598101 6.180000e-65 259
28 TraesCS5B01G498000 chrUn 96.711 152 5 0 4675 4826 147140837 147140686 2.870000e-63 254
29 TraesCS5B01G498000 chrUn 96.053 152 6 0 4675 4826 147222811 147222660 1.340000e-61 248
30 TraesCS5B01G498000 chr3B 91.727 278 19 4 476 751 78291028 78290753 3.510000e-102 383
31 TraesCS5B01G498000 chr7A 100.000 162 0 0 3581 3742 48816610 48816449 3.640000e-77 300
32 TraesCS5B01G498000 chr7A 93.035 201 9 4 3542 3742 350423562 350423757 7.880000e-74 289
33 TraesCS5B01G498000 chr7B 100.000 161 0 0 3582 3742 401536952 401536792 1.310000e-76 298
34 TraesCS5B01G498000 chr7B 98.026 152 3 0 4675 4826 670987396 670987245 1.330000e-66 265
35 TraesCS5B01G498000 chr7B 98.026 152 3 0 4675 4826 671242895 671242744 1.330000e-66 265
36 TraesCS5B01G498000 chr7B 95.789 95 4 0 3480 3574 115290 115196 3.000000e-33 154
37 TraesCS5B01G498000 chr7B 92.929 99 6 1 3481 3578 115195 115293 6.490000e-30 143
38 TraesCS5B01G498000 chr2A 100.000 161 0 0 3582 3742 65400499 65400339 1.310000e-76 298
39 TraesCS5B01G498000 chr6A 100.000 160 0 0 3583 3742 582491246 582491087 4.710000e-76 296
40 TraesCS5B01G498000 chr6B 98.684 152 2 0 4675 4826 62221122 62220971 2.850000e-68 270
41 TraesCS5B01G498000 chr6B 98.026 152 3 0 4675 4826 647635742 647635591 1.330000e-66 265
42 TraesCS5B01G498000 chr4A 96.053 152 6 0 4675 4826 739580279 739580128 1.340000e-61 248
43 TraesCS5B01G498000 chr1B 88.021 192 12 8 3163 3351 550282040 550281857 3.770000e-52 217
44 TraesCS5B01G498000 chr6D 93.684 95 5 1 3482 3576 245495103 245495196 2.340000e-29 141
45 TraesCS5B01G498000 chr3D 92.857 98 1 4 3480 3577 302930384 302930475 3.020000e-28 137
46 TraesCS5B01G498000 chr4D 91.262 103 3 3 3479 3581 64347449 64347353 1.090000e-27 135
47 TraesCS5B01G498000 chr2B 90.741 108 1 6 3477 3582 142869514 142869614 1.090000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G498000 chr5B 664948927 664955139 6212 True 11474 11474 100.000000 1 6213 1 chr5B.!!$R2 6212
1 TraesCS5B01G498000 chr5B 664682975 664683549 574 False 691 691 88.448000 5587 6161 1 chr5B.!!$F4 574
2 TraesCS5B01G498000 chr5D 528143450 528149102 5652 True 3084 4054 96.013667 354 6160 3 chr5D.!!$R3 5806
3 TraesCS5B01G498000 chr5D 527905137 527905711 574 False 669 669 87.695000 5587 6161 1 chr5D.!!$F1 574
4 TraesCS5B01G498000 chr5A 655991547 655997281 5734 True 1729 3938 93.675400 354 6160 5 chr5A.!!$R2 5806
5 TraesCS5B01G498000 chr5A 655461807 655462388 581 False 660 660 87.223000 5580 6161 1 chr5A.!!$F3 581
6 TraesCS5B01G498000 chrUn 263458401 263458926 525 True 612 612 87.689000 5636 6161 1 chrUn.!!$R6 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 427 0.036765 GCCCACTGATCCAACGTACA 60.037 55.0 0.00 0.0 0.00 2.90 F
499 500 0.323629 TTTTAGTCCCACCTCGCCTG 59.676 55.0 0.00 0.0 0.00 4.85 F
771 772 0.739561 CCTGTACGGTACCTGCTCTC 59.260 60.0 15.26 0.0 0.00 3.20 F
2339 2412 0.304705 GTCCATTCTTGCATACCGCG 59.695 55.0 0.00 0.0 46.97 6.46 F
3685 3793 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.0 40.08 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2058 2.035442 GGTCGCTCCAGAAGTTGCC 61.035 63.158 0.0 0.0 35.97 4.52 R
2316 2389 2.733956 GGTATGCAAGAATGGACCCAA 58.266 47.619 0.0 0.0 0.00 4.12 R
2366 2439 3.324846 AGGAATACTGAAGCACACTGTCA 59.675 43.478 0.0 0.0 0.00 3.58 R
3711 3819 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.0 0.0 34.10 3.16 R
5386 5622 0.949105 GGTCGTGAAAGCGTGGTCAT 60.949 55.000 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.868450 ACTTTCGTGTGAAATTTCGTGA 57.132 36.364 13.34 5.69 42.90 4.35
22 23 5.224562 ACTTTCGTGTGAAATTTCGTGAA 57.775 34.783 13.34 10.81 42.90 3.18
23 24 5.632959 ACTTTCGTGTGAAATTTCGTGAAA 58.367 33.333 13.34 16.25 42.90 2.69
24 25 6.087522 ACTTTCGTGTGAAATTTCGTGAAAA 58.912 32.000 13.34 8.85 42.90 2.29
25 26 6.583050 ACTTTCGTGTGAAATTTCGTGAAAAA 59.417 30.769 13.34 9.73 42.90 1.94
49 50 9.461312 AAAATACCAAGAAACATATCTGTAGCA 57.539 29.630 0.00 0.00 33.36 3.49
50 51 9.461312 AAATACCAAGAAACATATCTGTAGCAA 57.539 29.630 0.00 0.00 33.36 3.91
51 52 9.461312 AATACCAAGAAACATATCTGTAGCAAA 57.539 29.630 0.00 0.00 33.36 3.68
52 53 7.759489 ACCAAGAAACATATCTGTAGCAAAA 57.241 32.000 0.00 0.00 33.36 2.44
53 54 8.177119 ACCAAGAAACATATCTGTAGCAAAAA 57.823 30.769 0.00 0.00 33.36 1.94
54 55 8.299570 ACCAAGAAACATATCTGTAGCAAAAAG 58.700 33.333 0.00 0.00 33.36 2.27
55 56 8.299570 CCAAGAAACATATCTGTAGCAAAAAGT 58.700 33.333 0.00 0.00 33.36 2.66
56 57 9.334693 CAAGAAACATATCTGTAGCAAAAAGTC 57.665 33.333 0.00 0.00 33.36 3.01
57 58 8.621532 AGAAACATATCTGTAGCAAAAAGTCA 57.378 30.769 0.00 0.00 33.36 3.41
58 59 9.066892 AGAAACATATCTGTAGCAAAAAGTCAA 57.933 29.630 0.00 0.00 33.36 3.18
59 60 9.677567 GAAACATATCTGTAGCAAAAAGTCAAA 57.322 29.630 0.00 0.00 33.36 2.69
103 104 8.574196 AAAAACTGTTTTGATGGATTAGTTCG 57.426 30.769 18.33 0.00 35.58 3.95
104 105 5.880054 ACTGTTTTGATGGATTAGTTCGG 57.120 39.130 0.00 0.00 0.00 4.30
105 106 4.156008 ACTGTTTTGATGGATTAGTTCGGC 59.844 41.667 0.00 0.00 0.00 5.54
106 107 3.442273 TGTTTTGATGGATTAGTTCGGCC 59.558 43.478 0.00 0.00 0.00 6.13
107 108 3.644966 TTTGATGGATTAGTTCGGCCT 57.355 42.857 0.00 0.00 0.00 5.19
108 109 4.764050 TTTGATGGATTAGTTCGGCCTA 57.236 40.909 0.00 0.00 0.00 3.93
109 110 3.746045 TGATGGATTAGTTCGGCCTAC 57.254 47.619 0.00 0.00 0.00 3.18
110 111 2.035449 TGATGGATTAGTTCGGCCTACG 59.965 50.000 0.00 0.00 46.11 3.51
111 112 1.477553 TGGATTAGTTCGGCCTACGT 58.522 50.000 0.00 0.00 44.69 3.57
112 113 1.826720 TGGATTAGTTCGGCCTACGTT 59.173 47.619 0.00 0.00 44.69 3.99
113 114 2.234414 TGGATTAGTTCGGCCTACGTTT 59.766 45.455 0.00 0.00 44.69 3.60
114 115 3.264947 GGATTAGTTCGGCCTACGTTTT 58.735 45.455 0.00 0.00 44.69 2.43
115 116 3.308053 GGATTAGTTCGGCCTACGTTTTC 59.692 47.826 0.00 0.00 44.69 2.29
116 117 3.665745 TTAGTTCGGCCTACGTTTTCT 57.334 42.857 0.00 0.00 44.69 2.52
117 118 2.538512 AGTTCGGCCTACGTTTTCTT 57.461 45.000 0.00 0.00 44.69 2.52
118 119 2.410939 AGTTCGGCCTACGTTTTCTTC 58.589 47.619 0.00 0.00 44.69 2.87
119 120 1.125566 GTTCGGCCTACGTTTTCTTCG 59.874 52.381 0.00 0.00 44.69 3.79
120 121 0.314935 TCGGCCTACGTTTTCTTCGT 59.685 50.000 0.00 0.00 44.69 3.85
121 122 0.712222 CGGCCTACGTTTTCTTCGTC 59.288 55.000 0.00 0.00 41.72 4.20
122 123 1.787012 GGCCTACGTTTTCTTCGTCA 58.213 50.000 0.00 0.00 41.72 4.35
123 124 1.458445 GGCCTACGTTTTCTTCGTCAC 59.542 52.381 0.00 0.00 41.72 3.67
124 125 1.123756 GCCTACGTTTTCTTCGTCACG 59.876 52.381 0.00 0.00 41.72 4.35
125 126 1.717645 CCTACGTTTTCTTCGTCACGG 59.282 52.381 0.00 0.00 41.72 4.94
126 127 1.717645 CTACGTTTTCTTCGTCACGGG 59.282 52.381 0.00 0.00 41.72 5.28
127 128 0.179103 ACGTTTTCTTCGTCACGGGT 60.179 50.000 0.00 0.00 36.85 5.28
128 129 1.066908 ACGTTTTCTTCGTCACGGGTA 59.933 47.619 0.00 0.00 36.85 3.69
129 130 1.453148 CGTTTTCTTCGTCACGGGTAC 59.547 52.381 0.00 0.00 0.00 3.34
130 131 2.472816 GTTTTCTTCGTCACGGGTACA 58.527 47.619 0.00 0.00 0.00 2.90
131 132 3.062042 GTTTTCTTCGTCACGGGTACAT 58.938 45.455 0.00 0.00 0.00 2.29
132 133 3.389925 TTTCTTCGTCACGGGTACATT 57.610 42.857 0.00 0.00 0.00 2.71
133 134 3.389925 TTCTTCGTCACGGGTACATTT 57.610 42.857 0.00 0.00 0.00 2.32
134 135 2.950433 TCTTCGTCACGGGTACATTTC 58.050 47.619 0.00 0.00 0.00 2.17
135 136 2.296752 TCTTCGTCACGGGTACATTTCA 59.703 45.455 0.00 0.00 0.00 2.69
136 137 3.056393 TCTTCGTCACGGGTACATTTCAT 60.056 43.478 0.00 0.00 0.00 2.57
137 138 2.612604 TCGTCACGGGTACATTTCATG 58.387 47.619 0.00 0.00 0.00 3.07
138 139 2.231721 TCGTCACGGGTACATTTCATGA 59.768 45.455 0.00 0.00 0.00 3.07
139 140 3.118920 TCGTCACGGGTACATTTCATGAT 60.119 43.478 0.00 0.00 0.00 2.45
140 141 4.098196 TCGTCACGGGTACATTTCATGATA 59.902 41.667 0.00 0.00 0.00 2.15
141 142 4.988540 CGTCACGGGTACATTTCATGATAT 59.011 41.667 0.00 0.00 0.00 1.63
142 143 5.465390 CGTCACGGGTACATTTCATGATATT 59.535 40.000 0.00 0.00 0.00 1.28
143 144 6.018262 CGTCACGGGTACATTTCATGATATTT 60.018 38.462 0.00 0.00 0.00 1.40
144 145 7.466725 CGTCACGGGTACATTTCATGATATTTT 60.467 37.037 0.00 0.00 0.00 1.82
145 146 8.188139 GTCACGGGTACATTTCATGATATTTTT 58.812 33.333 0.00 0.00 0.00 1.94
146 147 8.402472 TCACGGGTACATTTCATGATATTTTTC 58.598 33.333 0.00 0.00 0.00 2.29
147 148 8.405531 CACGGGTACATTTCATGATATTTTTCT 58.594 33.333 0.00 0.00 0.00 2.52
148 149 9.621629 ACGGGTACATTTCATGATATTTTTCTA 57.378 29.630 0.00 0.00 0.00 2.10
167 168 9.715121 TTTTTCTATGAAACTTCATACGGTAGT 57.285 29.630 7.86 0.00 45.54 2.73
168 169 8.697846 TTTCTATGAAACTTCATACGGTAGTG 57.302 34.615 7.86 0.00 45.54 2.74
169 170 7.634671 TCTATGAAACTTCATACGGTAGTGA 57.365 36.000 7.86 1.14 45.54 3.41
170 171 7.704271 TCTATGAAACTTCATACGGTAGTGAG 58.296 38.462 7.86 0.00 45.54 3.51
171 172 5.068234 TGAAACTTCATACGGTAGTGAGG 57.932 43.478 0.00 1.99 31.01 3.86
172 173 4.768448 TGAAACTTCATACGGTAGTGAGGA 59.232 41.667 12.87 0.00 31.01 3.71
173 174 4.715527 AACTTCATACGGTAGTGAGGAC 57.284 45.455 12.87 0.00 0.00 3.85
174 175 3.022406 ACTTCATACGGTAGTGAGGACC 58.978 50.000 12.87 0.00 0.00 4.46
175 176 2.062971 TCATACGGTAGTGAGGACCC 57.937 55.000 0.00 0.00 32.95 4.46
176 177 1.285667 TCATACGGTAGTGAGGACCCA 59.714 52.381 0.00 0.00 32.95 4.51
177 178 2.104967 CATACGGTAGTGAGGACCCAA 58.895 52.381 0.00 0.00 32.95 4.12
178 179 1.843368 TACGGTAGTGAGGACCCAAG 58.157 55.000 0.00 0.00 32.95 3.61
179 180 0.178941 ACGGTAGTGAGGACCCAAGT 60.179 55.000 0.00 0.00 32.95 3.16
180 181 0.974383 CGGTAGTGAGGACCCAAGTT 59.026 55.000 0.00 0.00 32.95 2.66
181 182 1.346722 CGGTAGTGAGGACCCAAGTTT 59.653 52.381 0.00 0.00 32.95 2.66
182 183 2.779506 GGTAGTGAGGACCCAAGTTTG 58.220 52.381 0.00 0.00 0.00 2.93
183 184 2.370849 GGTAGTGAGGACCCAAGTTTGA 59.629 50.000 0.00 0.00 0.00 2.69
184 185 2.938956 AGTGAGGACCCAAGTTTGAG 57.061 50.000 0.00 0.00 0.00 3.02
185 186 2.408565 AGTGAGGACCCAAGTTTGAGA 58.591 47.619 0.00 0.00 0.00 3.27
186 187 2.982488 AGTGAGGACCCAAGTTTGAGAT 59.018 45.455 0.00 0.00 0.00 2.75
187 188 3.077359 GTGAGGACCCAAGTTTGAGATG 58.923 50.000 0.00 0.00 0.00 2.90
188 189 2.087646 GAGGACCCAAGTTTGAGATGC 58.912 52.381 0.00 0.00 0.00 3.91
189 190 1.177401 GGACCCAAGTTTGAGATGCC 58.823 55.000 0.00 0.00 0.00 4.40
190 191 1.547675 GGACCCAAGTTTGAGATGCCA 60.548 52.381 0.00 0.00 0.00 4.92
191 192 2.238521 GACCCAAGTTTGAGATGCCAA 58.761 47.619 0.00 0.00 0.00 4.52
192 193 2.229784 GACCCAAGTTTGAGATGCCAAG 59.770 50.000 0.00 0.00 0.00 3.61
193 194 2.158475 ACCCAAGTTTGAGATGCCAAGA 60.158 45.455 0.00 0.00 0.00 3.02
194 195 3.094572 CCCAAGTTTGAGATGCCAAGAT 58.905 45.455 0.00 0.00 0.00 2.40
195 196 3.512724 CCCAAGTTTGAGATGCCAAGATT 59.487 43.478 0.00 0.00 0.00 2.40
196 197 4.020839 CCCAAGTTTGAGATGCCAAGATTT 60.021 41.667 0.00 0.00 0.00 2.17
197 198 5.166398 CCAAGTTTGAGATGCCAAGATTTC 58.834 41.667 0.00 0.00 0.00 2.17
198 199 5.279106 CCAAGTTTGAGATGCCAAGATTTCA 60.279 40.000 0.00 0.00 0.00 2.69
199 200 5.640189 AGTTTGAGATGCCAAGATTTCAG 57.360 39.130 0.00 0.00 0.00 3.02
200 201 5.319453 AGTTTGAGATGCCAAGATTTCAGA 58.681 37.500 0.00 0.00 0.00 3.27
201 202 5.182760 AGTTTGAGATGCCAAGATTTCAGAC 59.817 40.000 0.00 0.00 0.00 3.51
202 203 4.564782 TGAGATGCCAAGATTTCAGACT 57.435 40.909 0.00 0.00 0.00 3.24
203 204 4.914983 TGAGATGCCAAGATTTCAGACTT 58.085 39.130 0.00 0.00 0.00 3.01
204 205 5.319453 TGAGATGCCAAGATTTCAGACTTT 58.681 37.500 0.00 0.00 0.00 2.66
205 206 5.771666 TGAGATGCCAAGATTTCAGACTTTT 59.228 36.000 0.00 0.00 0.00 2.27
206 207 6.266103 TGAGATGCCAAGATTTCAGACTTTTT 59.734 34.615 0.00 0.00 0.00 1.94
239 240 8.225603 TCCCATCACTTCTTAATTAAATCTGC 57.774 34.615 0.00 0.00 0.00 4.26
240 241 7.285401 TCCCATCACTTCTTAATTAAATCTGCC 59.715 37.037 0.00 0.00 0.00 4.85
241 242 7.068593 CCCATCACTTCTTAATTAAATCTGCCA 59.931 37.037 0.00 0.00 0.00 4.92
242 243 8.636213 CCATCACTTCTTAATTAAATCTGCCAT 58.364 33.333 0.00 0.00 0.00 4.40
243 244 9.459640 CATCACTTCTTAATTAAATCTGCCATG 57.540 33.333 0.00 0.00 0.00 3.66
244 245 8.579850 TCACTTCTTAATTAAATCTGCCATGT 57.420 30.769 0.00 0.00 0.00 3.21
245 246 8.461222 TCACTTCTTAATTAAATCTGCCATGTG 58.539 33.333 0.00 0.00 0.00 3.21
246 247 7.221452 CACTTCTTAATTAAATCTGCCATGTGC 59.779 37.037 0.00 0.00 41.77 4.57
247 248 7.123247 ACTTCTTAATTAAATCTGCCATGTGCT 59.877 33.333 0.00 0.00 42.00 4.40
248 249 7.031226 TCTTAATTAAATCTGCCATGTGCTC 57.969 36.000 0.00 0.00 42.00 4.26
249 250 3.976793 ATTAAATCTGCCATGTGCTCG 57.023 42.857 7.54 0.52 42.00 5.03
250 251 2.689553 TAAATCTGCCATGTGCTCGA 57.310 45.000 7.54 5.02 42.00 4.04
251 252 1.376543 AAATCTGCCATGTGCTCGAG 58.623 50.000 8.45 8.45 42.00 4.04
252 253 0.251354 AATCTGCCATGTGCTCGAGT 59.749 50.000 15.13 0.00 42.00 4.18
253 254 1.114627 ATCTGCCATGTGCTCGAGTA 58.885 50.000 15.13 6.73 42.00 2.59
254 255 0.457443 TCTGCCATGTGCTCGAGTAG 59.543 55.000 15.13 0.00 42.00 2.57
255 256 0.174389 CTGCCATGTGCTCGAGTAGT 59.826 55.000 15.13 0.00 42.00 2.73
256 257 1.405463 CTGCCATGTGCTCGAGTAGTA 59.595 52.381 15.13 1.87 42.00 1.82
257 258 1.134367 TGCCATGTGCTCGAGTAGTAC 59.866 52.381 15.13 9.00 40.92 2.73
258 259 1.536284 GCCATGTGCTCGAGTAGTACC 60.536 57.143 15.13 0.00 39.88 3.34
259 260 2.025155 CCATGTGCTCGAGTAGTACCT 58.975 52.381 15.13 0.00 39.88 3.08
260 261 2.427453 CCATGTGCTCGAGTAGTACCTT 59.573 50.000 15.13 0.00 39.88 3.50
261 262 3.119101 CCATGTGCTCGAGTAGTACCTTT 60.119 47.826 15.13 0.00 39.88 3.11
262 263 4.495422 CATGTGCTCGAGTAGTACCTTTT 58.505 43.478 15.13 0.00 39.88 2.27
263 264 4.170292 TGTGCTCGAGTAGTACCTTTTC 57.830 45.455 15.13 0.00 39.88 2.29
264 265 3.825014 TGTGCTCGAGTAGTACCTTTTCT 59.175 43.478 15.13 0.00 39.88 2.52
265 266 4.280174 TGTGCTCGAGTAGTACCTTTTCTT 59.720 41.667 15.13 0.00 39.88 2.52
266 267 5.221382 TGTGCTCGAGTAGTACCTTTTCTTT 60.221 40.000 15.13 0.00 39.88 2.52
267 268 5.695363 GTGCTCGAGTAGTACCTTTTCTTTT 59.305 40.000 15.13 0.00 34.96 2.27
268 269 5.924825 TGCTCGAGTAGTACCTTTTCTTTTC 59.075 40.000 15.13 0.00 0.00 2.29
269 270 6.157904 GCTCGAGTAGTACCTTTTCTTTTCT 58.842 40.000 15.13 0.00 0.00 2.52
270 271 6.089685 GCTCGAGTAGTACCTTTTCTTTTCTG 59.910 42.308 15.13 0.00 0.00 3.02
271 272 6.453092 TCGAGTAGTACCTTTTCTTTTCTGG 58.547 40.000 0.00 0.00 0.00 3.86
272 273 6.041296 TCGAGTAGTACCTTTTCTTTTCTGGT 59.959 38.462 0.00 0.00 35.05 4.00
273 274 6.704937 CGAGTAGTACCTTTTCTTTTCTGGTT 59.295 38.462 0.00 0.00 32.74 3.67
274 275 7.307219 CGAGTAGTACCTTTTCTTTTCTGGTTG 60.307 40.741 0.00 0.00 32.74 3.77
275 276 5.515797 AGTACCTTTTCTTTTCTGGTTGC 57.484 39.130 0.00 0.00 32.74 4.17
276 277 4.953579 AGTACCTTTTCTTTTCTGGTTGCA 59.046 37.500 0.00 0.00 32.74 4.08
277 278 4.391405 ACCTTTTCTTTTCTGGTTGCAG 57.609 40.909 0.00 0.00 0.00 4.41
278 279 3.769300 ACCTTTTCTTTTCTGGTTGCAGT 59.231 39.130 0.00 0.00 0.00 4.40
279 280 4.222810 ACCTTTTCTTTTCTGGTTGCAGTT 59.777 37.500 0.00 0.00 0.00 3.16
280 281 5.178061 CCTTTTCTTTTCTGGTTGCAGTTT 58.822 37.500 0.00 0.00 0.00 2.66
281 282 5.063817 CCTTTTCTTTTCTGGTTGCAGTTTG 59.936 40.000 0.00 0.00 0.00 2.93
282 283 5.398603 TTTCTTTTCTGGTTGCAGTTTGA 57.601 34.783 0.00 0.00 0.00 2.69
283 284 4.637483 TCTTTTCTGGTTGCAGTTTGAG 57.363 40.909 0.00 0.00 0.00 3.02
284 285 4.016444 TCTTTTCTGGTTGCAGTTTGAGT 58.984 39.130 0.00 0.00 0.00 3.41
285 286 5.189928 TCTTTTCTGGTTGCAGTTTGAGTA 58.810 37.500 0.00 0.00 0.00 2.59
286 287 5.296780 TCTTTTCTGGTTGCAGTTTGAGTAG 59.703 40.000 0.00 0.00 0.00 2.57
287 288 3.838244 TCTGGTTGCAGTTTGAGTAGT 57.162 42.857 0.00 0.00 0.00 2.73
288 289 4.948341 TCTGGTTGCAGTTTGAGTAGTA 57.052 40.909 0.00 0.00 0.00 1.82
289 290 4.628074 TCTGGTTGCAGTTTGAGTAGTAC 58.372 43.478 0.00 0.00 0.00 2.73
290 291 3.735591 TGGTTGCAGTTTGAGTAGTACC 58.264 45.455 0.00 0.00 0.00 3.34
291 292 3.072211 GGTTGCAGTTTGAGTAGTACCC 58.928 50.000 0.00 0.00 0.00 3.69
292 293 3.072211 GTTGCAGTTTGAGTAGTACCCC 58.928 50.000 0.00 0.00 0.00 4.95
293 294 2.331166 TGCAGTTTGAGTAGTACCCCA 58.669 47.619 0.00 0.00 0.00 4.96
294 295 2.910319 TGCAGTTTGAGTAGTACCCCAT 59.090 45.455 0.00 0.00 0.00 4.00
295 296 3.329520 TGCAGTTTGAGTAGTACCCCATT 59.670 43.478 0.00 0.00 0.00 3.16
296 297 4.202524 TGCAGTTTGAGTAGTACCCCATTT 60.203 41.667 0.00 0.00 0.00 2.32
297 298 4.765339 GCAGTTTGAGTAGTACCCCATTTT 59.235 41.667 0.00 0.00 0.00 1.82
298 299 5.243060 GCAGTTTGAGTAGTACCCCATTTTT 59.757 40.000 0.00 0.00 0.00 1.94
317 318 4.637483 TTTTCTTGAGAACAGGCTGTTG 57.363 40.909 35.57 20.93 41.28 3.33
318 319 3.281727 TTCTTGAGAACAGGCTGTTGT 57.718 42.857 35.57 31.60 41.28 3.32
319 320 3.281727 TCTTGAGAACAGGCTGTTGTT 57.718 42.857 35.57 23.11 41.28 2.83
320 321 4.415881 TCTTGAGAACAGGCTGTTGTTA 57.584 40.909 35.57 25.68 41.28 2.41
321 322 4.973168 TCTTGAGAACAGGCTGTTGTTAT 58.027 39.130 35.57 18.70 41.28 1.89
322 323 4.756642 TCTTGAGAACAGGCTGTTGTTATG 59.243 41.667 35.57 27.09 41.28 1.90
323 324 3.411446 TGAGAACAGGCTGTTGTTATGG 58.589 45.455 35.57 0.00 41.28 2.74
324 325 2.162408 GAGAACAGGCTGTTGTTATGGC 59.838 50.000 35.57 19.40 41.28 4.40
325 326 2.162681 GAACAGGCTGTTGTTATGGCT 58.837 47.619 35.57 10.15 41.28 4.75
326 327 1.826385 ACAGGCTGTTGTTATGGCTC 58.174 50.000 15.88 0.00 34.31 4.70
327 328 1.352352 ACAGGCTGTTGTTATGGCTCT 59.648 47.619 15.88 0.00 34.31 4.09
328 329 1.741706 CAGGCTGTTGTTATGGCTCTG 59.258 52.381 6.28 0.00 34.31 3.35
329 330 1.630369 AGGCTGTTGTTATGGCTCTGA 59.370 47.619 0.00 0.00 30.64 3.27
330 331 2.040278 AGGCTGTTGTTATGGCTCTGAA 59.960 45.455 0.00 0.00 30.64 3.02
331 332 2.162408 GGCTGTTGTTATGGCTCTGAAC 59.838 50.000 0.00 0.00 0.00 3.18
332 333 2.162408 GCTGTTGTTATGGCTCTGAACC 59.838 50.000 0.00 0.00 0.00 3.62
333 334 2.749621 CTGTTGTTATGGCTCTGAACCC 59.250 50.000 0.00 0.00 0.00 4.11
334 335 2.092323 GTTGTTATGGCTCTGAACCCC 58.908 52.381 0.00 0.00 0.00 4.95
335 336 1.367346 TGTTATGGCTCTGAACCCCA 58.633 50.000 0.00 0.00 0.00 4.96
336 337 1.004277 TGTTATGGCTCTGAACCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
337 338 1.282157 GTTATGGCTCTGAACCCCACT 59.718 52.381 0.00 0.00 0.00 4.00
338 339 1.668826 TATGGCTCTGAACCCCACTT 58.331 50.000 0.00 0.00 0.00 3.16
339 340 0.779997 ATGGCTCTGAACCCCACTTT 59.220 50.000 0.00 0.00 0.00 2.66
340 341 0.555769 TGGCTCTGAACCCCACTTTT 59.444 50.000 0.00 0.00 0.00 2.27
341 342 1.063266 TGGCTCTGAACCCCACTTTTT 60.063 47.619 0.00 0.00 0.00 1.94
365 366 3.560902 GAGCTAAACTCAAAGCCCAAC 57.439 47.619 0.00 0.00 45.49 3.77
426 427 0.036765 GCCCACTGATCCAACGTACA 60.037 55.000 0.00 0.00 0.00 2.90
438 439 1.273455 AACGTACAACGACAGCGCTC 61.273 55.000 7.13 0.00 46.05 5.03
499 500 0.323629 TTTTAGTCCCACCTCGCCTG 59.676 55.000 0.00 0.00 0.00 4.85
629 630 1.185315 GTTAGTGGCCCACATTGCAT 58.815 50.000 17.80 0.00 36.74 3.96
751 752 9.705290 TCTTCAAAATTAAATTTTAGTCCCTGC 57.295 29.630 0.00 0.00 40.27 4.85
756 757 3.542969 AAATTTTAGTCCCTGCCCTGT 57.457 42.857 0.00 0.00 0.00 4.00
757 758 4.668138 AAATTTTAGTCCCTGCCCTGTA 57.332 40.909 0.00 0.00 0.00 2.74
758 759 3.646736 ATTTTAGTCCCTGCCCTGTAC 57.353 47.619 0.00 0.00 0.00 2.90
759 760 0.899720 TTTAGTCCCTGCCCTGTACG 59.100 55.000 0.00 0.00 0.00 3.67
760 761 0.974010 TTAGTCCCTGCCCTGTACGG 60.974 60.000 0.00 0.00 0.00 4.02
761 762 2.159101 TAGTCCCTGCCCTGTACGGT 62.159 60.000 0.00 0.00 0.00 4.83
762 763 1.683365 GTCCCTGCCCTGTACGGTA 60.683 63.158 0.00 0.00 0.00 4.02
763 764 1.683365 TCCCTGCCCTGTACGGTAC 60.683 63.158 11.33 11.33 0.00 3.34
764 765 2.728435 CCCTGCCCTGTACGGTACC 61.728 68.421 15.26 0.16 0.00 3.34
766 767 1.515954 CTGCCCTGTACGGTACCTG 59.484 63.158 15.26 6.27 0.00 4.00
769 770 1.814527 CCCTGTACGGTACCTGCTC 59.185 63.158 15.26 0.00 0.00 4.26
771 772 0.739561 CCTGTACGGTACCTGCTCTC 59.260 60.000 15.26 0.00 0.00 3.20
772 773 1.460504 CTGTACGGTACCTGCTCTCA 58.539 55.000 15.26 0.23 0.00 3.27
773 774 1.816835 CTGTACGGTACCTGCTCTCAA 59.183 52.381 15.26 0.00 0.00 3.02
774 775 2.230508 CTGTACGGTACCTGCTCTCAAA 59.769 50.000 15.26 0.00 0.00 2.69
775 776 2.029649 TGTACGGTACCTGCTCTCAAAC 60.030 50.000 15.26 0.00 0.00 2.93
777 778 1.000955 ACGGTACCTGCTCTCAAACAG 59.999 52.381 10.90 0.00 0.00 3.16
778 779 1.272490 CGGTACCTGCTCTCAAACAGA 59.728 52.381 10.90 0.00 35.90 3.41
806 807 4.798574 AGTCGTTGCTCAATTTTCATTCC 58.201 39.130 0.00 0.00 0.00 3.01
815 816 3.511146 TCAATTTTCATTCCAGTCCCTGC 59.489 43.478 0.00 0.00 0.00 4.85
835 836 2.743538 TGTCCAGTGATGCGCTGC 60.744 61.111 9.73 0.13 40.25 5.25
841 842 0.989164 CAGTGATGCGCTGCAATTTG 59.011 50.000 9.73 2.94 43.62 2.32
850 851 2.926159 GCGCTGCAATTTGTAACATGGT 60.926 45.455 0.00 0.00 0.00 3.55
861 862 5.574891 TTGTAACATGGTCCATATTGCAC 57.425 39.130 12.62 1.45 24.14 4.57
866 867 5.680594 ACATGGTCCATATTGCACATTTT 57.319 34.783 3.38 0.00 0.00 1.82
875 876 8.677300 GTCCATATTGCACATTTTATCGGATAT 58.323 33.333 0.00 0.00 0.00 1.63
878 879 9.712359 CATATTGCACATTTTATCGGATATCTG 57.288 33.333 5.07 5.07 0.00 2.90
881 882 8.669946 TTGCACATTTTATCGGATATCTGTAA 57.330 30.769 11.35 6.90 0.00 2.41
882 883 8.846943 TGCACATTTTATCGGATATCTGTAAT 57.153 30.769 11.35 1.58 0.00 1.89
884 885 9.760660 GCACATTTTATCGGATATCTGTAATTC 57.239 33.333 11.35 0.00 0.00 2.17
1094 1103 4.789075 CCGCCTACCACGTCCACG 62.789 72.222 0.00 0.00 46.33 4.94
1266 1275 1.599518 CGCCGCCCCAAATATAGCA 60.600 57.895 0.00 0.00 0.00 3.49
1287 1296 0.765510 ATCCCCGTGCCTTCTATTCC 59.234 55.000 0.00 0.00 0.00 3.01
1294 1303 2.803817 GCCTTCTATTCCGGGGCGA 61.804 63.158 0.00 0.00 33.30 5.54
1298 1307 2.572290 CTTCTATTCCGGGGCGAAATT 58.428 47.619 0.00 0.00 0.00 1.82
1299 1308 2.721425 TCTATTCCGGGGCGAAATTT 57.279 45.000 0.00 0.00 0.00 1.82
1459 1468 2.158370 TCCCGTGAGCTTATATCCCTCA 60.158 50.000 0.00 0.00 33.53 3.86
1985 2058 2.612212 CCTTTTCGGTTATGACATCGGG 59.388 50.000 0.00 0.00 0.00 5.14
2172 2245 2.919602 TGGTAAGCCTTTTGGGAGATCT 59.080 45.455 0.00 0.00 40.82 2.75
2315 2388 5.001232 GTGGTTCACTTTATGGTGCTCTTA 58.999 41.667 0.00 0.00 37.16 2.10
2316 2389 5.648092 GTGGTTCACTTTATGGTGCTCTTAT 59.352 40.000 0.00 0.00 37.16 1.73
2339 2412 0.304705 GTCCATTCTTGCATACCGCG 59.695 55.000 0.00 0.00 46.97 6.46
2366 2439 8.125978 TGCAGATTTTCTAGGTGATTTGAAAT 57.874 30.769 0.00 0.00 0.00 2.17
2680 2754 9.396022 ACGAGTCAAAGGAACATATTTATGATT 57.604 29.630 4.63 0.00 37.15 2.57
2754 2828 2.019249 CATGCCACTGAACTACCATGG 58.981 52.381 11.19 11.19 0.00 3.66
3016 3090 3.060473 GCTACGAAATCGATGTTGTAGGC 60.060 47.826 31.32 23.22 43.02 3.93
3131 3205 1.114722 CAGGGCAGTGCAGGGAAAAA 61.115 55.000 18.61 0.00 0.00 1.94
3411 3485 8.485578 AACTGAATTTAAAATCTTACCACCCA 57.514 30.769 4.94 0.00 0.00 4.51
3423 3497 0.850883 ACCACCCATTCCACCATCCT 60.851 55.000 0.00 0.00 0.00 3.24
3424 3498 0.336048 CCACCCATTCCACCATCCTT 59.664 55.000 0.00 0.00 0.00 3.36
3425 3499 1.273211 CCACCCATTCCACCATCCTTT 60.273 52.381 0.00 0.00 0.00 3.11
3525 3633 9.900710 AATATAAGAGCGTTTAGATCACTACTG 57.099 33.333 0.00 0.00 37.82 2.74
3526 3634 4.035278 AGAGCGTTTAGATCACTACTGC 57.965 45.455 0.00 0.00 37.82 4.40
3527 3635 3.697045 AGAGCGTTTAGATCACTACTGCT 59.303 43.478 0.00 0.00 37.82 4.24
3528 3636 3.775202 AGCGTTTAGATCACTACTGCTG 58.225 45.455 0.00 0.00 32.88 4.41
3529 3637 2.282820 GCGTTTAGATCACTACTGCTGC 59.717 50.000 0.00 0.00 0.00 5.25
3530 3638 3.775202 CGTTTAGATCACTACTGCTGCT 58.225 45.455 0.00 0.00 0.00 4.24
3531 3639 3.549471 CGTTTAGATCACTACTGCTGCTG 59.451 47.826 4.89 4.89 0.00 4.41
3578 3686 4.670765 TCTTTACGGAGGGAGTACTTTCT 58.329 43.478 0.00 0.00 0.00 2.52
3579 3687 5.819991 TCTTTACGGAGGGAGTACTTTCTA 58.180 41.667 0.00 0.00 0.00 2.10
3580 3688 6.430007 TCTTTACGGAGGGAGTACTTTCTAT 58.570 40.000 0.00 0.00 0.00 1.98
3581 3689 6.894103 TCTTTACGGAGGGAGTACTTTCTATT 59.106 38.462 0.00 0.00 0.00 1.73
3582 3690 6.705863 TTACGGAGGGAGTACTTTCTATTC 57.294 41.667 0.00 0.00 0.00 1.75
3583 3691 4.869451 ACGGAGGGAGTACTTTCTATTCT 58.131 43.478 0.00 0.00 0.00 2.40
3584 3692 6.011122 ACGGAGGGAGTACTTTCTATTCTA 57.989 41.667 0.00 0.00 0.00 2.10
3585 3693 6.430007 ACGGAGGGAGTACTTTCTATTCTAA 58.570 40.000 0.00 0.00 0.00 2.10
3586 3694 6.894103 ACGGAGGGAGTACTTTCTATTCTAAA 59.106 38.462 0.00 0.00 0.00 1.85
3587 3695 7.068470 ACGGAGGGAGTACTTTCTATTCTAAAG 59.932 40.741 0.00 0.00 39.38 1.85
3588 3696 7.470286 CGGAGGGAGTACTTTCTATTCTAAAGG 60.470 44.444 0.00 0.00 38.09 3.11
3589 3697 7.564292 GGAGGGAGTACTTTCTATTCTAAAGGA 59.436 40.741 0.00 0.00 38.09 3.36
3590 3698 8.308851 AGGGAGTACTTTCTATTCTAAAGGAC 57.691 38.462 0.00 3.26 44.71 3.85
3591 3699 7.899709 AGGGAGTACTTTCTATTCTAAAGGACA 59.100 37.037 12.19 0.00 46.12 4.02
3592 3700 8.198778 GGGAGTACTTTCTATTCTAAAGGACAG 58.801 40.741 12.19 0.00 46.12 3.51
3593 3701 8.968969 GGAGTACTTTCTATTCTAAAGGACAGA 58.031 37.037 12.19 0.00 46.12 3.41
3594 3702 9.791820 GAGTACTTTCTATTCTAAAGGACAGAC 57.208 37.037 12.19 2.02 46.12 3.51
3595 3703 8.751242 AGTACTTTCTATTCTAAAGGACAGACC 58.249 37.037 12.19 0.00 46.12 3.85
3596 3704 6.948589 ACTTTCTATTCTAAAGGACAGACCC 58.051 40.000 0.00 0.00 38.09 4.46
3597 3705 6.500751 ACTTTCTATTCTAAAGGACAGACCCA 59.499 38.462 0.00 0.00 38.09 4.51
3598 3706 6.546428 TTCTATTCTAAAGGACAGACCCAG 57.454 41.667 0.00 0.00 40.05 4.45
3599 3707 5.590818 TCTATTCTAAAGGACAGACCCAGT 58.409 41.667 0.00 0.00 40.05 4.00
3600 3708 4.559862 ATTCTAAAGGACAGACCCAGTG 57.440 45.455 0.00 0.00 40.05 3.66
3601 3709 1.623811 TCTAAAGGACAGACCCAGTGC 59.376 52.381 0.00 0.00 40.05 4.40
3602 3710 1.347707 CTAAAGGACAGACCCAGTGCA 59.652 52.381 0.00 0.00 40.05 4.57
3603 3711 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
3604 3712 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
3605 3713 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
3606 3714 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
3607 3715 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3608 3716 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
3609 3717 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3610 3718 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3611 3719 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3612 3720 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
3613 3721 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
3614 3722 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
3615 3723 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
3616 3724 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
3617 3725 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
3618 3726 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
3619 3727 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
3620 3728 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3621 3729 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
3622 3730 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
3630 3738 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
3631 3739 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
3632 3740 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
3633 3741 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
3634 3742 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
3635 3743 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
3636 3744 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
3638 3746 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
3639 3747 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
3640 3748 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3641 3749 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
3642 3750 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
3643 3751 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
3644 3752 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
3645 3753 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
3646 3754 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
3647 3755 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
3648 3756 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
3649 3757 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
3650 3758 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
3651 3759 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
3652 3760 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
3653 3761 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
3654 3762 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
3655 3763 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
3656 3764 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
3657 3765 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
3658 3766 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
3659 3767 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
3660 3768 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
3661 3769 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
3662 3770 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
3663 3771 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
3664 3772 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
3665 3773 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
3666 3774 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
3667 3775 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
3668 3776 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
3669 3777 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
3670 3778 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
3671 3779 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
3682 3790 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
3683 3791 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
3684 3792 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
3685 3793 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
3687 3795 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
3688 3796 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
3689 3797 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
3690 3798 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
3691 3799 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
3692 3800 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
3693 3801 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
3694 3802 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
3703 3811 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
3704 3812 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
3705 3813 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
3706 3814 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
3707 3815 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
3708 3816 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
3709 3817 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
3710 3818 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
3711 3819 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
3712 3820 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
3723 3831 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
3724 3832 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
3725 3833 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
3726 3834 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
3727 3835 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
3728 3836 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
3729 3837 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
3735 3843 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
3736 3844 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
3737 3845 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
3738 3846 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
3739 3847 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
3740 3848 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
3741 3849 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
3742 3850 3.832237 CTTCACCACTGCGCCAGGT 62.832 63.158 4.18 7.40 35.51 4.00
3743 3851 3.414136 TTCACCACTGCGCCAGGTT 62.414 57.895 12.16 0.00 35.51 3.50
3744 3852 3.357079 CACCACTGCGCCAGGTTC 61.357 66.667 12.16 0.00 35.51 3.62
3950 4182 7.499232 GTGTTCTATACTATGCAACCTCCATTT 59.501 37.037 0.00 0.00 0.00 2.32
3980 4212 0.588252 TCAGTTTTGCTTCGAGCTGC 59.412 50.000 0.00 0.00 42.97 5.25
4096 4328 2.565834 TCTGTAGACTGCTGGGTTTACC 59.434 50.000 0.00 0.00 40.81 2.85
4230 4462 0.953727 TGCAGTTTGTGATGACAGGC 59.046 50.000 0.00 0.00 32.26 4.85
4307 4539 6.147328 GGTGTTAGTGGAATTGTGAGTAACTC 59.853 42.308 0.00 0.00 0.00 3.01
4310 4542 8.812972 TGTTAGTGGAATTGTGAGTAACTCTAT 58.187 33.333 0.00 0.00 0.00 1.98
4374 4606 1.306141 TGACCCTCATTCCTCGCCT 60.306 57.895 0.00 0.00 0.00 5.52
4670 4902 0.392461 TCCCTTATGTTGCTGTCGGC 60.392 55.000 0.00 0.00 42.22 5.54
4969 5201 7.393234 CCTTGTTTATGTATCCCTTGAAGTTCA 59.607 37.037 0.08 0.08 0.00 3.18
5055 5287 1.348538 GCGCCAACCAATTTAACCGC 61.349 55.000 0.00 0.00 0.00 5.68
5138 5370 2.936912 ATATCGCTGCTCGCCCTCC 61.937 63.158 0.00 0.00 38.27 4.30
5191 5423 0.033699 GGCTGAGCCTGGAGGAAATT 60.034 55.000 17.96 0.00 46.69 1.82
5252 5487 3.404869 TTCATCCTCTAGCCTCTTCCA 57.595 47.619 0.00 0.00 0.00 3.53
5260 5495 2.016393 TAGCCTCTTCCATGTCCGCG 62.016 60.000 0.00 0.00 0.00 6.46
5269 5504 4.467084 ATGTCCGCGCCGTGGATT 62.467 61.111 23.71 10.90 44.40 3.01
5280 5515 1.143838 CGTGGATTGGATCGGAGCA 59.856 57.895 0.00 0.00 0.00 4.26
5386 5622 5.106673 CGATCTGTAGTTGTACTGACACTCA 60.107 44.000 0.00 0.00 39.23 3.41
5403 5639 0.032815 TCATGACCACGCTTTCACGA 59.967 50.000 0.00 0.00 36.70 4.35
5434 5671 5.311265 TCTGAATCAGCTGTCATTTCTGTT 58.689 37.500 14.67 0.00 0.00 3.16
5436 5673 3.844577 ATCAGCTGTCATTTCTGTTGC 57.155 42.857 14.67 0.00 0.00 4.17
5443 5680 1.610522 GTCATTTCTGTTGCTGCCTGT 59.389 47.619 0.00 0.00 0.00 4.00
5461 5698 5.874810 TGCCTGTAATTCTGATGTTACTGTC 59.125 40.000 11.99 5.41 33.17 3.51
5567 5806 1.669211 CGTTTCTCGTCAGGGGAGTTC 60.669 57.143 0.00 0.00 33.26 3.01
6006 6245 3.612371 AAGACGTCGGAGCTCGTGC 62.612 63.158 10.46 0.07 37.80 5.34
6143 6382 2.431771 CCGTTCATGTCGGCGTCA 60.432 61.111 9.58 9.58 41.48 4.35
6169 6408 4.821589 GTTGCCGGCGAGGAGGAG 62.822 72.222 23.90 0.00 45.00 3.69
6174 6413 4.507916 CGGCGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
6175 6414 2.835895 GGCGAGGAGGAGGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
6176 6415 2.835895 GCGAGGAGGAGGAGGACC 60.836 72.222 0.00 0.00 0.00 4.46
6177 6416 2.517402 CGAGGAGGAGGAGGACCG 60.517 72.222 0.00 0.00 41.83 4.79
6178 6417 3.008408 GAGGAGGAGGAGGACCGA 58.992 66.667 0.00 0.00 41.83 4.69
6179 6418 1.152839 GAGGAGGAGGAGGACCGAG 60.153 68.421 0.00 0.00 41.83 4.63
6180 6419 1.619975 AGGAGGAGGAGGACCGAGA 60.620 63.158 0.00 0.00 41.83 4.04
6181 6420 1.454295 GGAGGAGGAGGACCGAGAC 60.454 68.421 0.00 0.00 41.83 3.36
6182 6421 1.610873 GAGGAGGAGGACCGAGACT 59.389 63.158 0.00 0.00 41.83 3.24
6183 6422 0.838608 GAGGAGGAGGACCGAGACTA 59.161 60.000 0.00 0.00 41.83 2.59
6184 6423 1.212441 GAGGAGGAGGACCGAGACTAA 59.788 57.143 0.00 0.00 41.83 2.24
6185 6424 1.064537 AGGAGGAGGACCGAGACTAAC 60.065 57.143 0.00 0.00 41.83 2.34
6186 6425 1.015868 GAGGAGGACCGAGACTAACG 58.984 60.000 0.00 0.00 41.83 3.18
6187 6426 1.031029 AGGAGGACCGAGACTAACGC 61.031 60.000 0.00 0.00 41.83 4.84
6188 6427 1.062206 GAGGACCGAGACTAACGCG 59.938 63.158 3.53 3.53 41.18 6.01
6193 6432 2.579787 CGAGACTAACGCGGCCAG 60.580 66.667 12.47 6.70 38.09 4.85
6194 6433 2.886124 GAGACTAACGCGGCCAGC 60.886 66.667 12.47 6.52 43.95 4.85
6205 6444 3.643978 GGCCAGCGCGATCATCAC 61.644 66.667 12.10 0.00 35.02 3.06
6206 6445 3.993234 GCCAGCGCGATCATCACG 61.993 66.667 12.10 0.00 0.00 4.35
6207 6446 3.333189 CCAGCGCGATCATCACGG 61.333 66.667 12.10 0.00 0.00 4.94
6208 6447 3.993234 CAGCGCGATCATCACGGC 61.993 66.667 12.10 0.00 0.00 5.68
6211 6450 2.730976 CGCGATCATCACGGCGAT 60.731 61.111 16.62 0.00 34.42 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.547493 TTTTCACGAAATTTCACACGAAAG 57.453 33.333 17.99 1.90 44.15 2.62
2 3 6.929587 TTTTTCACGAAATTTCACACGAAA 57.070 29.167 17.99 15.12 44.99 3.46
23 24 9.461312 TGCTACAGATATGTTTCTTGGTATTTT 57.539 29.630 0.00 0.00 0.00 1.82
24 25 9.461312 TTGCTACAGATATGTTTCTTGGTATTT 57.539 29.630 0.00 0.00 0.00 1.40
25 26 9.461312 TTTGCTACAGATATGTTTCTTGGTATT 57.539 29.630 0.00 0.00 0.00 1.89
26 27 9.461312 TTTTGCTACAGATATGTTTCTTGGTAT 57.539 29.630 0.00 0.00 0.00 2.73
27 28 8.856153 TTTTGCTACAGATATGTTTCTTGGTA 57.144 30.769 0.00 0.00 0.00 3.25
28 29 7.759489 TTTTGCTACAGATATGTTTCTTGGT 57.241 32.000 0.00 0.00 0.00 3.67
29 30 8.299570 ACTTTTTGCTACAGATATGTTTCTTGG 58.700 33.333 0.00 0.00 0.00 3.61
30 31 9.334693 GACTTTTTGCTACAGATATGTTTCTTG 57.665 33.333 0.00 0.00 0.00 3.02
31 32 9.066892 TGACTTTTTGCTACAGATATGTTTCTT 57.933 29.630 0.00 0.00 0.00 2.52
32 33 8.621532 TGACTTTTTGCTACAGATATGTTTCT 57.378 30.769 0.00 0.00 0.00 2.52
33 34 9.677567 TTTGACTTTTTGCTACAGATATGTTTC 57.322 29.630 0.00 0.00 0.00 2.78
78 79 7.651704 CCGAACTAATCCATCAAAACAGTTTTT 59.348 33.333 8.65 0.00 35.15 1.94
79 80 7.145323 CCGAACTAATCCATCAAAACAGTTTT 58.855 34.615 5.37 5.37 0.00 2.43
80 81 6.677913 CCGAACTAATCCATCAAAACAGTTT 58.322 36.000 0.00 0.00 0.00 2.66
81 82 5.335661 GCCGAACTAATCCATCAAAACAGTT 60.336 40.000 0.00 0.00 0.00 3.16
82 83 4.156008 GCCGAACTAATCCATCAAAACAGT 59.844 41.667 0.00 0.00 0.00 3.55
83 84 4.438744 GGCCGAACTAATCCATCAAAACAG 60.439 45.833 0.00 0.00 0.00 3.16
84 85 3.442273 GGCCGAACTAATCCATCAAAACA 59.558 43.478 0.00 0.00 0.00 2.83
85 86 3.694566 AGGCCGAACTAATCCATCAAAAC 59.305 43.478 0.00 0.00 0.00 2.43
86 87 3.963129 AGGCCGAACTAATCCATCAAAA 58.037 40.909 0.00 0.00 0.00 2.44
87 88 3.644966 AGGCCGAACTAATCCATCAAA 57.355 42.857 0.00 0.00 0.00 2.69
88 89 3.491964 CGTAGGCCGAACTAATCCATCAA 60.492 47.826 0.00 0.00 39.56 2.57
89 90 2.035449 CGTAGGCCGAACTAATCCATCA 59.965 50.000 0.00 0.00 39.56 3.07
90 91 2.035576 ACGTAGGCCGAACTAATCCATC 59.964 50.000 0.00 0.00 40.70 3.51
91 92 2.037144 ACGTAGGCCGAACTAATCCAT 58.963 47.619 0.00 0.00 40.70 3.41
92 93 1.477553 ACGTAGGCCGAACTAATCCA 58.522 50.000 0.00 0.00 40.70 3.41
93 94 2.591571 AACGTAGGCCGAACTAATCC 57.408 50.000 0.00 0.00 40.70 3.01
94 95 4.179298 AGAAAACGTAGGCCGAACTAATC 58.821 43.478 0.00 0.00 40.70 1.75
95 96 4.198028 AGAAAACGTAGGCCGAACTAAT 57.802 40.909 0.00 0.00 40.70 1.73
96 97 3.665745 AGAAAACGTAGGCCGAACTAA 57.334 42.857 0.00 0.00 40.70 2.24
97 98 3.578688 GAAGAAAACGTAGGCCGAACTA 58.421 45.455 0.00 0.00 40.70 2.24
98 99 2.410939 GAAGAAAACGTAGGCCGAACT 58.589 47.619 0.00 0.00 40.70 3.01
99 100 1.125566 CGAAGAAAACGTAGGCCGAAC 59.874 52.381 0.00 0.00 40.70 3.95
100 101 1.269726 ACGAAGAAAACGTAGGCCGAA 60.270 47.619 0.00 0.00 42.17 4.30
101 102 0.314935 ACGAAGAAAACGTAGGCCGA 59.685 50.000 0.00 0.00 42.17 5.54
102 103 0.712222 GACGAAGAAAACGTAGGCCG 59.288 55.000 0.00 0.00 43.97 6.13
103 104 1.458445 GTGACGAAGAAAACGTAGGCC 59.542 52.381 0.00 0.00 43.97 5.19
104 105 1.123756 CGTGACGAAGAAAACGTAGGC 59.876 52.381 0.00 0.00 43.97 3.93
105 106 1.717645 CCGTGACGAAGAAAACGTAGG 59.282 52.381 6.54 0.00 43.97 3.18
106 107 1.717645 CCCGTGACGAAGAAAACGTAG 59.282 52.381 6.54 0.00 43.97 3.51
107 108 1.066908 ACCCGTGACGAAGAAAACGTA 59.933 47.619 6.54 0.00 43.97 3.57
108 109 0.179103 ACCCGTGACGAAGAAAACGT 60.179 50.000 6.54 0.00 46.58 3.99
109 110 1.453148 GTACCCGTGACGAAGAAAACG 59.547 52.381 6.54 0.00 35.85 3.60
110 111 2.472816 TGTACCCGTGACGAAGAAAAC 58.527 47.619 6.54 0.00 0.00 2.43
111 112 2.886862 TGTACCCGTGACGAAGAAAA 57.113 45.000 6.54 0.00 0.00 2.29
112 113 3.389925 AATGTACCCGTGACGAAGAAA 57.610 42.857 6.54 0.00 0.00 2.52
113 114 3.243805 TGAAATGTACCCGTGACGAAGAA 60.244 43.478 6.54 0.00 0.00 2.52
114 115 2.296752 TGAAATGTACCCGTGACGAAGA 59.703 45.455 6.54 0.00 0.00 2.87
115 116 2.679450 TGAAATGTACCCGTGACGAAG 58.321 47.619 6.54 0.00 0.00 3.79
116 117 2.816204 TGAAATGTACCCGTGACGAA 57.184 45.000 6.54 0.00 0.00 3.85
117 118 2.231721 TCATGAAATGTACCCGTGACGA 59.768 45.455 6.54 0.00 46.80 4.20
118 119 2.612604 TCATGAAATGTACCCGTGACG 58.387 47.619 0.00 0.00 46.80 4.35
119 120 6.861065 AATATCATGAAATGTACCCGTGAC 57.139 37.500 0.00 0.00 46.80 3.67
120 121 7.873719 AAAATATCATGAAATGTACCCGTGA 57.126 32.000 0.00 0.00 46.80 4.35
121 122 8.405531 AGAAAAATATCATGAAATGTACCCGTG 58.594 33.333 0.00 0.00 46.80 4.94
122 123 8.519799 AGAAAAATATCATGAAATGTACCCGT 57.480 30.769 0.00 0.00 46.80 5.28
147 148 6.604396 TCCTCACTACCGTATGAAGTTTCATA 59.396 38.462 9.84 9.84 45.54 2.15
149 150 4.768448 TCCTCACTACCGTATGAAGTTTCA 59.232 41.667 0.00 0.00 42.14 2.69
150 151 5.100943 GTCCTCACTACCGTATGAAGTTTC 58.899 45.833 0.00 0.00 0.00 2.78
151 152 4.081807 GGTCCTCACTACCGTATGAAGTTT 60.082 45.833 0.00 0.00 0.00 2.66
152 153 3.446516 GGTCCTCACTACCGTATGAAGTT 59.553 47.826 0.00 0.00 0.00 2.66
153 154 3.022406 GGTCCTCACTACCGTATGAAGT 58.978 50.000 0.00 0.00 0.00 3.01
154 155 2.361438 GGGTCCTCACTACCGTATGAAG 59.639 54.545 0.00 0.00 37.93 3.02
155 156 2.291735 TGGGTCCTCACTACCGTATGAA 60.292 50.000 0.00 0.00 37.93 2.57
156 157 1.285667 TGGGTCCTCACTACCGTATGA 59.714 52.381 0.00 0.00 37.93 2.15
157 158 1.771565 TGGGTCCTCACTACCGTATG 58.228 55.000 0.00 0.00 37.93 2.39
158 159 2.292061 ACTTGGGTCCTCACTACCGTAT 60.292 50.000 0.00 0.00 37.93 3.06
159 160 1.076024 ACTTGGGTCCTCACTACCGTA 59.924 52.381 0.00 0.00 37.93 4.02
160 161 0.178941 ACTTGGGTCCTCACTACCGT 60.179 55.000 0.00 0.00 37.93 4.83
161 162 0.974383 AACTTGGGTCCTCACTACCG 59.026 55.000 0.00 0.00 37.93 4.02
162 163 2.370849 TCAAACTTGGGTCCTCACTACC 59.629 50.000 0.00 0.00 36.19 3.18
163 164 3.323979 TCTCAAACTTGGGTCCTCACTAC 59.676 47.826 0.00 0.00 0.00 2.73
164 165 3.583228 TCTCAAACTTGGGTCCTCACTA 58.417 45.455 0.00 0.00 0.00 2.74
165 166 2.408565 TCTCAAACTTGGGTCCTCACT 58.591 47.619 0.00 0.00 0.00 3.41
166 167 2.930826 TCTCAAACTTGGGTCCTCAC 57.069 50.000 0.00 0.00 0.00 3.51
167 168 2.553028 GCATCTCAAACTTGGGTCCTCA 60.553 50.000 0.00 0.00 0.00 3.86
168 169 2.087646 GCATCTCAAACTTGGGTCCTC 58.912 52.381 0.00 0.00 0.00 3.71
169 170 1.272147 GGCATCTCAAACTTGGGTCCT 60.272 52.381 0.00 0.00 0.00 3.85
170 171 1.177401 GGCATCTCAAACTTGGGTCC 58.823 55.000 0.00 0.00 0.00 4.46
171 172 1.909700 TGGCATCTCAAACTTGGGTC 58.090 50.000 0.00 0.00 0.00 4.46
172 173 2.158475 TCTTGGCATCTCAAACTTGGGT 60.158 45.455 0.00 0.00 0.00 4.51
173 174 2.517959 TCTTGGCATCTCAAACTTGGG 58.482 47.619 0.00 0.00 0.00 4.12
174 175 4.796038 AATCTTGGCATCTCAAACTTGG 57.204 40.909 0.00 0.00 0.00 3.61
175 176 5.775686 TGAAATCTTGGCATCTCAAACTTG 58.224 37.500 0.00 0.00 0.00 3.16
176 177 5.771666 TCTGAAATCTTGGCATCTCAAACTT 59.228 36.000 0.00 0.00 0.00 2.66
177 178 5.182760 GTCTGAAATCTTGGCATCTCAAACT 59.817 40.000 0.00 0.00 0.00 2.66
178 179 5.182760 AGTCTGAAATCTTGGCATCTCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
179 180 5.319453 AGTCTGAAATCTTGGCATCTCAAA 58.681 37.500 0.00 0.00 0.00 2.69
180 181 4.914983 AGTCTGAAATCTTGGCATCTCAA 58.085 39.130 0.00 0.00 0.00 3.02
181 182 4.564782 AGTCTGAAATCTTGGCATCTCA 57.435 40.909 0.00 0.00 0.00 3.27
182 183 5.893897 AAAGTCTGAAATCTTGGCATCTC 57.106 39.130 0.00 0.00 0.00 2.75
183 184 6.661304 AAAAAGTCTGAAATCTTGGCATCT 57.339 33.333 0.00 0.00 0.00 2.90
213 214 8.686334 GCAGATTTAATTAAGAAGTGATGGGAA 58.314 33.333 0.00 0.00 0.00 3.97
214 215 7.285401 GGCAGATTTAATTAAGAAGTGATGGGA 59.715 37.037 0.00 0.00 0.00 4.37
215 216 7.068593 TGGCAGATTTAATTAAGAAGTGATGGG 59.931 37.037 0.00 0.00 0.00 4.00
216 217 7.999679 TGGCAGATTTAATTAAGAAGTGATGG 58.000 34.615 0.00 0.00 0.00 3.51
217 218 9.459640 CATGGCAGATTTAATTAAGAAGTGATG 57.540 33.333 0.00 0.00 0.00 3.07
218 219 9.193806 ACATGGCAGATTTAATTAAGAAGTGAT 57.806 29.630 0.00 0.00 0.00 3.06
219 220 8.461222 CACATGGCAGATTTAATTAAGAAGTGA 58.539 33.333 0.00 0.00 0.00 3.41
220 221 7.221452 GCACATGGCAGATTTAATTAAGAAGTG 59.779 37.037 0.00 0.00 43.97 3.16
221 222 7.260603 GCACATGGCAGATTTAATTAAGAAGT 58.739 34.615 0.00 0.00 43.97 3.01
222 223 7.689953 GCACATGGCAGATTTAATTAAGAAG 57.310 36.000 0.00 0.00 43.97 2.85
238 239 1.536284 GGTACTACTCGAGCACATGGC 60.536 57.143 13.61 0.00 45.30 4.40
239 240 2.025155 AGGTACTACTCGAGCACATGG 58.975 52.381 13.61 0.00 36.02 3.66
240 241 3.784701 AAGGTACTACTCGAGCACATG 57.215 47.619 13.61 0.75 38.49 3.21
241 242 4.463186 AGAAAAGGTACTACTCGAGCACAT 59.537 41.667 13.61 0.12 38.49 3.21
242 243 3.825014 AGAAAAGGTACTACTCGAGCACA 59.175 43.478 13.61 0.00 38.49 4.57
243 244 4.437772 AGAAAAGGTACTACTCGAGCAC 57.562 45.455 13.61 5.45 38.49 4.40
244 245 5.464030 AAAGAAAAGGTACTACTCGAGCA 57.536 39.130 13.61 0.00 38.49 4.26
245 246 6.089685 CAGAAAAGAAAAGGTACTACTCGAGC 59.910 42.308 13.61 0.00 38.49 5.03
246 247 6.586844 CCAGAAAAGAAAAGGTACTACTCGAG 59.413 42.308 11.84 11.84 38.49 4.04
247 248 6.041296 ACCAGAAAAGAAAAGGTACTACTCGA 59.959 38.462 0.00 0.00 38.49 4.04
248 249 6.221659 ACCAGAAAAGAAAAGGTACTACTCG 58.778 40.000 0.00 0.00 38.49 4.18
249 250 7.520131 GCAACCAGAAAAGAAAAGGTACTACTC 60.520 40.741 0.00 0.00 38.49 2.59
250 251 6.262496 GCAACCAGAAAAGAAAAGGTACTACT 59.738 38.462 0.00 0.00 38.49 2.57
251 252 6.038936 TGCAACCAGAAAAGAAAAGGTACTAC 59.961 38.462 0.00 0.00 38.49 2.73
252 253 6.123651 TGCAACCAGAAAAGAAAAGGTACTA 58.876 36.000 0.00 0.00 38.49 1.82
253 254 5.067805 CTGCAACCAGAAAAGAAAAGGTACT 59.932 40.000 0.00 0.00 41.77 2.73
254 255 5.163550 ACTGCAACCAGAAAAGAAAAGGTAC 60.164 40.000 0.00 0.00 41.77 3.34
255 256 4.953579 ACTGCAACCAGAAAAGAAAAGGTA 59.046 37.500 0.00 0.00 41.77 3.08
256 257 3.769300 ACTGCAACCAGAAAAGAAAAGGT 59.231 39.130 0.00 0.00 41.77 3.50
257 258 4.391405 ACTGCAACCAGAAAAGAAAAGG 57.609 40.909 0.00 0.00 41.77 3.11
258 259 5.868801 TCAAACTGCAACCAGAAAAGAAAAG 59.131 36.000 0.00 0.00 41.77 2.27
259 260 5.788450 TCAAACTGCAACCAGAAAAGAAAA 58.212 33.333 0.00 0.00 41.77 2.29
260 261 5.047377 ACTCAAACTGCAACCAGAAAAGAAA 60.047 36.000 0.00 0.00 41.77 2.52
261 262 4.462483 ACTCAAACTGCAACCAGAAAAGAA 59.538 37.500 0.00 0.00 41.77 2.52
262 263 4.016444 ACTCAAACTGCAACCAGAAAAGA 58.984 39.130 0.00 0.00 41.77 2.52
263 264 4.376340 ACTCAAACTGCAACCAGAAAAG 57.624 40.909 0.00 0.00 41.77 2.27
264 265 4.947388 ACTACTCAAACTGCAACCAGAAAA 59.053 37.500 0.00 0.00 41.77 2.29
265 266 4.523083 ACTACTCAAACTGCAACCAGAAA 58.477 39.130 0.00 0.00 41.77 2.52
266 267 4.150897 ACTACTCAAACTGCAACCAGAA 57.849 40.909 0.00 0.00 41.77 3.02
267 268 3.838244 ACTACTCAAACTGCAACCAGA 57.162 42.857 0.00 0.00 41.77 3.86
268 269 3.746492 GGTACTACTCAAACTGCAACCAG 59.254 47.826 0.00 0.00 44.80 4.00
269 270 3.495453 GGGTACTACTCAAACTGCAACCA 60.495 47.826 0.00 0.00 0.00 3.67
270 271 3.072211 GGGTACTACTCAAACTGCAACC 58.928 50.000 0.00 0.00 0.00 3.77
271 272 3.072211 GGGGTACTACTCAAACTGCAAC 58.928 50.000 0.00 0.00 0.00 4.17
272 273 2.706723 TGGGGTACTACTCAAACTGCAA 59.293 45.455 0.00 0.00 0.00 4.08
273 274 2.331166 TGGGGTACTACTCAAACTGCA 58.669 47.619 0.00 0.00 0.00 4.41
274 275 3.629142 ATGGGGTACTACTCAAACTGC 57.371 47.619 0.00 0.00 0.00 4.40
275 276 6.894339 AAAAATGGGGTACTACTCAAACTG 57.106 37.500 0.00 0.00 0.00 3.16
295 296 4.462483 ACAACAGCCTGTTCTCAAGAAAAA 59.538 37.500 7.22 0.00 38.77 1.94
296 297 4.016444 ACAACAGCCTGTTCTCAAGAAAA 58.984 39.130 7.22 0.00 38.77 2.29
297 298 3.620488 ACAACAGCCTGTTCTCAAGAAA 58.380 40.909 7.22 0.00 38.77 2.52
298 299 3.281727 ACAACAGCCTGTTCTCAAGAA 57.718 42.857 7.22 0.00 38.77 2.52
299 300 3.281727 AACAACAGCCTGTTCTCAAGA 57.718 42.857 7.22 0.00 38.77 3.02
300 301 4.083110 CCATAACAACAGCCTGTTCTCAAG 60.083 45.833 7.22 0.00 38.77 3.02
301 302 3.820467 CCATAACAACAGCCTGTTCTCAA 59.180 43.478 7.22 0.00 38.77 3.02
302 303 3.411446 CCATAACAACAGCCTGTTCTCA 58.589 45.455 7.22 0.00 38.77 3.27
303 304 2.162408 GCCATAACAACAGCCTGTTCTC 59.838 50.000 7.22 0.00 38.77 2.87
304 305 2.162681 GCCATAACAACAGCCTGTTCT 58.837 47.619 7.22 0.41 38.77 3.01
305 306 2.162408 GAGCCATAACAACAGCCTGTTC 59.838 50.000 7.22 0.00 38.77 3.18
306 307 2.162681 GAGCCATAACAACAGCCTGTT 58.837 47.619 3.74 3.74 42.08 3.16
307 308 1.352352 AGAGCCATAACAACAGCCTGT 59.648 47.619 0.00 0.00 0.00 4.00
308 309 1.741706 CAGAGCCATAACAACAGCCTG 59.258 52.381 0.00 0.00 0.00 4.85
309 310 1.630369 TCAGAGCCATAACAACAGCCT 59.370 47.619 0.00 0.00 0.00 4.58
310 311 2.113860 TCAGAGCCATAACAACAGCC 57.886 50.000 0.00 0.00 0.00 4.85
311 312 2.162408 GGTTCAGAGCCATAACAACAGC 59.838 50.000 0.00 0.00 0.00 4.40
312 313 2.749621 GGGTTCAGAGCCATAACAACAG 59.250 50.000 5.55 0.00 43.10 3.16
313 314 2.554344 GGGGTTCAGAGCCATAACAACA 60.554 50.000 5.55 0.00 45.46 3.33
314 315 2.092323 GGGGTTCAGAGCCATAACAAC 58.908 52.381 5.55 0.00 45.46 3.32
315 316 1.707989 TGGGGTTCAGAGCCATAACAA 59.292 47.619 5.55 0.00 45.46 2.83
316 317 1.004277 GTGGGGTTCAGAGCCATAACA 59.996 52.381 5.55 0.00 45.46 2.41
317 318 1.282157 AGTGGGGTTCAGAGCCATAAC 59.718 52.381 5.55 0.32 45.46 1.89
318 319 1.668826 AGTGGGGTTCAGAGCCATAA 58.331 50.000 5.55 0.00 45.46 1.90
319 320 1.668826 AAGTGGGGTTCAGAGCCATA 58.331 50.000 5.55 0.00 45.46 2.74
320 321 0.779997 AAAGTGGGGTTCAGAGCCAT 59.220 50.000 5.55 0.00 45.46 4.40
321 322 0.555769 AAAAGTGGGGTTCAGAGCCA 59.444 50.000 5.55 0.00 45.46 4.75
322 323 1.704641 AAAAAGTGGGGTTCAGAGCC 58.295 50.000 0.00 0.00 42.86 4.70
345 346 3.149981 AGTTGGGCTTTGAGTTTAGCTC 58.850 45.455 0.00 0.00 44.36 4.09
346 347 3.149981 GAGTTGGGCTTTGAGTTTAGCT 58.850 45.455 0.00 0.00 37.54 3.32
347 348 3.057946 CAGAGTTGGGCTTTGAGTTTAGC 60.058 47.826 0.00 0.00 36.66 3.09
348 349 4.137543 ACAGAGTTGGGCTTTGAGTTTAG 58.862 43.478 0.00 0.00 33.89 1.85
349 350 4.134563 GACAGAGTTGGGCTTTGAGTTTA 58.865 43.478 0.00 0.00 33.89 2.01
350 351 2.952310 GACAGAGTTGGGCTTTGAGTTT 59.048 45.455 0.00 0.00 33.89 2.66
351 352 2.173569 AGACAGAGTTGGGCTTTGAGTT 59.826 45.455 0.00 0.00 33.89 3.01
352 353 1.771255 AGACAGAGTTGGGCTTTGAGT 59.229 47.619 0.00 0.00 33.89 3.41
365 366 3.740764 GCCTCAGCAAAGGATAGACAGAG 60.741 52.174 8.49 0.00 38.87 3.35
426 427 3.303135 TGAGGGAGCGCTGTCGTT 61.303 61.111 18.48 0.00 38.14 3.85
499 500 2.279784 CGCTCGATGCCCTTCCTC 60.280 66.667 0.00 0.00 38.78 3.71
535 536 2.930562 GGGTGCACCTGGTCCTCT 60.931 66.667 33.91 0.00 35.85 3.69
609 610 0.112218 TGCAATGTGGGCCACTAACT 59.888 50.000 34.69 15.71 35.11 2.24
743 744 2.159101 TACCGTACAGGGCAGGGACT 62.159 60.000 8.31 0.00 46.96 3.85
750 751 2.186125 GCAGGTACCGTACAGGGC 59.814 66.667 6.18 6.83 46.96 5.19
751 752 0.683504 AGAGCAGGTACCGTACAGGG 60.684 60.000 6.18 0.85 46.96 4.45
756 757 2.230508 CTGTTTGAGAGCAGGTACCGTA 59.769 50.000 6.18 0.00 31.18 4.02
757 758 1.000955 CTGTTTGAGAGCAGGTACCGT 59.999 52.381 6.18 0.00 31.18 4.83
758 759 1.272490 TCTGTTTGAGAGCAGGTACCG 59.728 52.381 6.18 2.66 35.11 4.02
759 760 2.037251 TGTCTGTTTGAGAGCAGGTACC 59.963 50.000 2.73 2.73 35.11 3.34
760 761 3.386768 TGTCTGTTTGAGAGCAGGTAC 57.613 47.619 0.00 0.00 35.11 3.34
761 762 4.100963 TCTTTGTCTGTTTGAGAGCAGGTA 59.899 41.667 0.00 0.00 35.11 3.08
762 763 3.118261 TCTTTGTCTGTTTGAGAGCAGGT 60.118 43.478 0.00 0.00 35.11 4.00
763 764 3.470709 TCTTTGTCTGTTTGAGAGCAGG 58.529 45.455 0.00 0.00 35.11 4.85
764 765 4.125703 ACTCTTTGTCTGTTTGAGAGCAG 58.874 43.478 0.00 0.00 37.87 4.24
766 767 3.183373 CGACTCTTTGTCTGTTTGAGAGC 59.817 47.826 0.00 0.00 43.25 4.09
769 770 4.783450 GCAACGACTCTTTGTCTGTTTGAG 60.783 45.833 0.00 0.00 43.25 3.02
771 772 3.063997 AGCAACGACTCTTTGTCTGTTTG 59.936 43.478 0.00 0.00 43.25 2.93
772 773 3.270877 AGCAACGACTCTTTGTCTGTTT 58.729 40.909 0.00 0.00 43.25 2.83
773 774 2.866762 GAGCAACGACTCTTTGTCTGTT 59.133 45.455 0.00 0.00 43.25 3.16
774 775 2.159099 TGAGCAACGACTCTTTGTCTGT 60.159 45.455 0.00 0.00 43.25 3.41
775 776 2.473816 TGAGCAACGACTCTTTGTCTG 58.526 47.619 0.00 0.00 43.25 3.51
777 778 4.474226 AATTGAGCAACGACTCTTTGTC 57.526 40.909 0.00 0.00 42.06 3.18
778 779 4.900635 AAATTGAGCAACGACTCTTTGT 57.099 36.364 0.00 0.00 37.58 2.83
815 816 2.821366 GCGCATCACTGGACAGGG 60.821 66.667 0.30 0.00 0.00 4.45
835 836 7.010367 GTGCAATATGGACCATGTTACAAATTG 59.990 37.037 17.73 16.22 32.15 2.32
841 842 5.772825 ATGTGCAATATGGACCATGTTAC 57.227 39.130 17.73 11.86 37.97 2.50
850 851 8.806429 ATATCCGATAAAATGTGCAATATGGA 57.194 30.769 0.00 0.00 0.00 3.41
948 949 7.290857 CGTTGAGCCTAACGCATTATTATAT 57.709 36.000 9.68 0.00 45.49 0.86
949 950 6.699895 CGTTGAGCCTAACGCATTATTATA 57.300 37.500 9.68 0.00 45.49 0.98
978 985 1.375908 CGTGCTTCCAGGCTTAGCA 60.376 57.895 6.53 10.66 42.22 3.49
1266 1275 2.422945 GGAATAGAAGGCACGGGGATTT 60.423 50.000 0.00 0.00 0.00 2.17
1287 1296 4.490575 CGCCCAAATTTCGCCCCG 62.491 66.667 0.00 0.00 0.00 5.73
1498 1509 3.181475 TGGAACGCTTGATTAGAGCTAGG 60.181 47.826 0.00 0.00 37.99 3.02
1590 1601 2.604614 GGCGGACAAAGCAAAACTACTG 60.605 50.000 0.00 0.00 36.08 2.74
1985 2058 2.035442 GGTCGCTCCAGAAGTTGCC 61.035 63.158 0.00 0.00 35.97 4.52
2315 2388 3.299503 GGTATGCAAGAATGGACCCAAT 58.700 45.455 0.00 0.00 0.00 3.16
2316 2389 2.733956 GGTATGCAAGAATGGACCCAA 58.266 47.619 0.00 0.00 0.00 4.12
2339 2412 6.913170 TCAAATCACCTAGAAAATCTGCAAC 58.087 36.000 0.00 0.00 0.00 4.17
2366 2439 3.324846 AGGAATACTGAAGCACACTGTCA 59.675 43.478 0.00 0.00 0.00 3.58
2680 2754 8.548877 ACTTCTATCCATTCAAGCCTTTAGTTA 58.451 33.333 0.00 0.00 0.00 2.24
3016 3090 0.376852 CAAACATGTACCGCCATCCG 59.623 55.000 0.00 0.00 0.00 4.18
3131 3205 3.806949 TTTGTTGTCTTCCATAGGGCT 57.193 42.857 0.00 0.00 0.00 5.19
3322 3396 0.323908 AGAGAACCAGTCCTCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
3425 3499 7.090173 CGGGCAGAGAATTTCAAATCTAAAAA 58.910 34.615 0.00 0.00 0.00 1.94
3524 3632 3.511699 CGTTTAGATCACTACAGCAGCA 58.488 45.455 0.00 0.00 0.00 4.41
3525 3633 2.282820 GCGTTTAGATCACTACAGCAGC 59.717 50.000 0.00 0.00 0.00 5.25
3526 3634 3.775202 AGCGTTTAGATCACTACAGCAG 58.225 45.455 0.00 0.00 0.00 4.24
3527 3635 3.444034 AGAGCGTTTAGATCACTACAGCA 59.556 43.478 0.00 0.00 37.82 4.41
3528 3636 4.035278 AGAGCGTTTAGATCACTACAGC 57.965 45.455 0.00 0.00 37.82 4.40
3529 3637 9.900710 AATATAAGAGCGTTTAGATCACTACAG 57.099 33.333 0.00 0.00 37.82 2.74
3578 3686 4.081087 GCACTGGGTCTGTCCTTTAGAATA 60.081 45.833 0.00 0.00 36.25 1.75
3579 3687 3.307762 GCACTGGGTCTGTCCTTTAGAAT 60.308 47.826 0.00 0.00 36.25 2.40
3580 3688 2.038557 GCACTGGGTCTGTCCTTTAGAA 59.961 50.000 0.00 0.00 36.25 2.10
3581 3689 1.623811 GCACTGGGTCTGTCCTTTAGA 59.376 52.381 0.00 0.00 36.25 2.10
3582 3690 1.347707 TGCACTGGGTCTGTCCTTTAG 59.652 52.381 0.00 0.00 36.25 1.85
3583 3691 1.429930 TGCACTGGGTCTGTCCTTTA 58.570 50.000 0.00 0.00 36.25 1.85
3584 3692 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
3585 3693 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
3586 3694 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
3587 3695 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3588 3696 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3589 3697 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3590 3698 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3591 3699 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3592 3700 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
3593 3701 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
3594 3702 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
3595 3703 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
3596 3704 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
3597 3705 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
3598 3706 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
3599 3707 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
3600 3708 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
3601 3709 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
3602 3710 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
3603 3711 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
3604 3712 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
3605 3713 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
3606 3714 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
3613 3721 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
3614 3722 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
3615 3723 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
3616 3724 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
3617 3725 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
3618 3726 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
3619 3727 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
3621 3729 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
3622 3730 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
3623 3731 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
3624 3732 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
3625 3733 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
3626 3734 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
3627 3735 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
3628 3736 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
3629 3737 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
3630 3738 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
3631 3739 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
3632 3740 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
3633 3741 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
3634 3742 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
3635 3743 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
3636 3744 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
3637 3745 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
3638 3746 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
3639 3747 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
3640 3748 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
3641 3749 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
3642 3750 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
3643 3751 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
3644 3752 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
3645 3753 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
3646 3754 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
3647 3755 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
3648 3756 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
3649 3757 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
3650 3758 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
3651 3759 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
3652 3760 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
3653 3761 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
3663 3771 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
3664 3772 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
3665 3773 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
3666 3774 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
3667 3775 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
3668 3776 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
3669 3777 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
3670 3778 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
3671 3779 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
3672 3780 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
3673 3781 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
3674 3782 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
3675 3783 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
3676 3784 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
3687 3795 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
3688 3796 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
3689 3797 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
3690 3798 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
3691 3799 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
3692 3800 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
3693 3801 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
3694 3802 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
3695 3803 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
3696 3804 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
3697 3805 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
3698 3806 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
3699 3807 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
3700 3808 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
3701 3809 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
3702 3810 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
3703 3811 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
3704 3812 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
3705 3813 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
3706 3814 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
3707 3815 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
3708 3816 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
3709 3817 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
3710 3818 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
3711 3819 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
3712 3820 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
3713 3821 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
3714 3822 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
3715 3823 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
3716 3824 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
3717 3825 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
3718 3826 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
3719 3827 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
3720 3828 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
3721 3829 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
3722 3830 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
3723 3831 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
3724 3832 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
3725 3833 3.414136 AACCTGGCGCAGTGGTGAA 62.414 57.895 16.78 0.00 33.89 3.18
3726 3834 3.825160 GAACCTGGCGCAGTGGTGA 62.825 63.158 16.78 0.00 33.89 4.02
3727 3835 2.449031 TAGAACCTGGCGCAGTGGTG 62.449 60.000 16.78 0.00 33.89 4.17
3728 3836 1.553690 ATAGAACCTGGCGCAGTGGT 61.554 55.000 10.83 11.28 35.29 4.16
3729 3837 0.392998 AATAGAACCTGGCGCAGTGG 60.393 55.000 10.83 10.54 0.00 4.00
3730 3838 1.009829 GAATAGAACCTGGCGCAGTG 58.990 55.000 10.83 0.00 0.00 3.66
3731 3839 0.905357 AGAATAGAACCTGGCGCAGT 59.095 50.000 10.83 0.00 0.00 4.40
3732 3840 2.890808 TAGAATAGAACCTGGCGCAG 57.109 50.000 10.83 4.65 0.00 5.18
3733 3841 3.055385 AGTTTAGAATAGAACCTGGCGCA 60.055 43.478 10.83 0.00 0.00 6.09
3734 3842 3.532542 AGTTTAGAATAGAACCTGGCGC 58.467 45.455 0.00 0.00 0.00 6.53
3735 3843 7.787725 AAATAGTTTAGAATAGAACCTGGCG 57.212 36.000 0.00 0.00 0.00 5.69
3768 3876 8.063200 ACTTCCCAAGCCAAAAATAATACTAC 57.937 34.615 0.00 0.00 0.00 2.73
3950 4182 1.953686 GCAAAACTGAGGTACCTGCAA 59.046 47.619 22.10 3.57 0.00 4.08
3980 4212 8.795786 TTTCTAAATCAAACGAACCAATTGAG 57.204 30.769 7.12 0.00 36.59 3.02
4236 4468 2.516923 AGATCGTCGACTTTAAGCACG 58.483 47.619 14.70 5.64 0.00 5.34
4348 4580 2.711009 AGGAATGAGGGTCACACTTTCA 59.289 45.455 0.00 0.00 0.00 2.69
4374 4606 8.014070 TGGTACGACTATCAATTCAAATAGGA 57.986 34.615 0.00 0.00 31.11 2.94
4670 4902 6.842163 ACATCCAACATAAAGAAGTAAAGCG 58.158 36.000 0.00 0.00 0.00 4.68
5055 5287 5.163683 CCCTGTAGACATGAAGAAAGCAATG 60.164 44.000 0.00 0.00 0.00 2.82
5138 5370 2.480419 GGACGTTGAGGATGACAAACAG 59.520 50.000 0.00 0.00 0.00 3.16
5191 5423 5.503634 TTCACTTCTTCAGGATGGATTCA 57.496 39.130 0.00 0.00 36.16 2.57
5252 5487 4.467084 AATCCACGGCGCGGACAT 62.467 61.111 20.17 8.56 34.69 3.06
5260 5495 1.595382 CTCCGATCCAATCCACGGC 60.595 63.158 0.00 0.00 44.19 5.68
5264 5499 1.143838 CGTGCTCCGATCCAATCCA 59.856 57.895 0.00 0.00 39.56 3.41
5269 5504 4.451150 GTGGCGTGCTCCGATCCA 62.451 66.667 0.43 0.00 39.56 3.41
5386 5622 0.949105 GGTCGTGAAAGCGTGGTCAT 60.949 55.000 0.00 0.00 0.00 3.06
5403 5639 4.202398 TGACAGCTGATTCAGAAAAGAGGT 60.202 41.667 23.35 3.89 32.44 3.85
5434 5671 3.354948 ACATCAGAATTACAGGCAGCA 57.645 42.857 0.00 0.00 0.00 4.41
5436 5673 5.877012 ACAGTAACATCAGAATTACAGGCAG 59.123 40.000 9.52 0.00 34.36 4.85
5461 5698 6.479990 CCCATAGACACATACATACACTGTTG 59.520 42.308 0.00 0.00 39.39 3.33
5474 5711 1.280710 TGCGGTTTCCCATAGACACAT 59.719 47.619 0.00 0.00 0.00 3.21
5768 6007 4.853050 GGGCTGCTCTGCTCGCAT 62.853 66.667 0.00 0.00 36.70 4.73
6161 6400 1.152839 CTCGGTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
6162 6401 1.619975 TCTCGGTCCTCCTCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
6163 6402 1.454295 GTCTCGGTCCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
6164 6403 0.838608 TAGTCTCGGTCCTCCTCCTC 59.161 60.000 0.00 0.00 0.00 3.71
6165 6404 1.064537 GTTAGTCTCGGTCCTCCTCCT 60.065 57.143 0.00 0.00 0.00 3.69
6166 6405 1.391577 GTTAGTCTCGGTCCTCCTCC 58.608 60.000 0.00 0.00 0.00 4.30
6167 6406 1.015868 CGTTAGTCTCGGTCCTCCTC 58.984 60.000 0.00 0.00 0.00 3.71
6168 6407 1.031029 GCGTTAGTCTCGGTCCTCCT 61.031 60.000 0.00 0.00 0.00 3.69
6169 6408 1.432657 GCGTTAGTCTCGGTCCTCC 59.567 63.158 0.00 0.00 0.00 4.30
6170 6409 1.062206 CGCGTTAGTCTCGGTCCTC 59.938 63.158 0.00 0.00 0.00 3.71
6171 6410 2.404995 CCGCGTTAGTCTCGGTCCT 61.405 63.158 4.92 0.00 39.29 3.85
6172 6411 2.101770 CCGCGTTAGTCTCGGTCC 59.898 66.667 4.92 0.00 39.29 4.46
6173 6412 2.578981 GCCGCGTTAGTCTCGGTC 60.579 66.667 4.92 0.00 45.05 4.79
6174 6413 4.125695 GGCCGCGTTAGTCTCGGT 62.126 66.667 4.92 0.00 45.05 4.69
6175 6414 4.124351 TGGCCGCGTTAGTCTCGG 62.124 66.667 4.92 0.00 45.89 4.63
6176 6415 2.579787 CTGGCCGCGTTAGTCTCG 60.580 66.667 4.92 0.00 0.00 4.04
6177 6416 2.886124 GCTGGCCGCGTTAGTCTC 60.886 66.667 4.92 0.00 0.00 3.36
6188 6427 3.643978 GTGATGATCGCGCTGGCC 61.644 66.667 5.56 0.00 35.02 5.36
6189 6428 3.993234 CGTGATGATCGCGCTGGC 61.993 66.667 15.75 0.00 43.59 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.