Multiple sequence alignment - TraesCS5B01G497900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G497900 chr5B 100.000 2690 0 0 1 2690 664728497 664725808 0.000000e+00 4968.0
1 TraesCS5B01G497900 chr5B 83.932 529 67 5 2179 2690 508151230 508151757 8.650000e-135 490.0
2 TraesCS5B01G497900 chr5B 91.205 307 26 1 993 1299 664909836 664909531 1.490000e-112 416.0
3 TraesCS5B01G497900 chr5B 89.677 310 28 3 993 1299 664805657 664805349 2.510000e-105 392.0
4 TraesCS5B01G497900 chr5B 87.383 214 24 1 1457 1667 664805058 664804845 2.680000e-60 243.0
5 TraesCS5B01G497900 chr5B 87.383 214 24 1 1457 1667 664939407 664939194 2.680000e-60 243.0
6 TraesCS5B01G497900 chr5B 88.889 117 8 4 759 871 664873958 664873843 3.610000e-29 139.0
7 TraesCS5B01G497900 chr5B 89.247 93 9 1 480 571 436618466 436618374 6.090000e-22 115.0
8 TraesCS5B01G497900 chrUn 87.866 1162 72 26 759 1906 405885834 405886940 0.000000e+00 1301.0
9 TraesCS5B01G497900 chrUn 85.287 802 87 14 1901 2682 93026554 93027344 0.000000e+00 798.0
10 TraesCS5B01G497900 chrUn 91.948 534 28 3 1382 1906 68358681 68358154 0.000000e+00 734.0
11 TraesCS5B01G497900 chrUn 83.382 686 56 26 698 1374 268244238 268243602 1.390000e-162 582.0
12 TraesCS5B01G497900 chrUn 84.063 571 66 15 2129 2680 367156592 367156028 6.600000e-146 527.0
13 TraesCS5B01G497900 chrUn 78.040 551 84 28 1914 2438 410417137 410417676 2.010000e-81 313.0
14 TraesCS5B01G497900 chrUn 76.966 356 56 22 2101 2441 429774874 429774530 2.130000e-41 180.0
15 TraesCS5B01G497900 chr5A 86.116 1246 95 38 696 1901 655645980 655644773 0.000000e+00 1271.0
16 TraesCS5B01G497900 chr5A 85.245 1247 102 43 696 1906 655728542 655727342 0.000000e+00 1208.0
17 TraesCS5B01G497900 chr5A 85.164 1247 100 44 696 1906 655799646 655798449 0.000000e+00 1199.0
18 TraesCS5B01G497900 chr5A 85.036 1243 98 48 696 1906 655871828 655870642 0.000000e+00 1184.0
19 TraesCS5B01G497900 chr5A 86.301 219 27 1 1438 1653 655717402 655717184 4.480000e-58 235.0
20 TraesCS5B01G497900 chr5A 86.301 219 27 1 1438 1653 655862520 655862302 4.480000e-58 235.0
21 TraesCS5B01G497900 chr5A 74.645 493 92 24 1 477 86168923 86168448 1.270000e-43 187.0
22 TraesCS5B01G497900 chr5A 85.714 161 19 4 698 858 655790602 655790446 1.660000e-37 167.0
23 TraesCS5B01G497900 chr5A 85.714 161 19 4 698 858 655863154 655862998 1.660000e-37 167.0
24 TraesCS5B01G497900 chr5A 85.093 161 20 4 698 858 655718036 655717880 7.710000e-36 161.0
25 TraesCS5B01G497900 chr5A 78.992 238 31 13 2014 2237 686317981 686318213 7.760000e-31 145.0
26 TraesCS5B01G497900 chr5A 90.426 94 8 1 487 579 591083981 591083888 3.640000e-24 122.0
27 TraesCS5B01G497900 chr5A 87.719 57 7 0 572 628 603527010 603526954 1.730000e-07 67.6
28 TraesCS5B01G497900 chr2D 84.309 803 92 19 1903 2690 25325051 25325834 0.000000e+00 754.0
29 TraesCS5B01G497900 chr2D 83.640 489 77 3 4 491 7129110 7129596 8.780000e-125 457.0
30 TraesCS5B01G497900 chr2D 75.992 504 95 20 1 491 114822600 114823090 1.240000e-58 237.0
31 TraesCS5B01G497900 chr2D 92.941 85 4 2 487 570 530911286 530911369 3.640000e-24 122.0
32 TraesCS5B01G497900 chr2D 91.765 85 6 1 487 570 178776539 178776455 1.690000e-22 117.0
33 TraesCS5B01G497900 chr2D 92.982 57 4 0 569 625 7129592 7129648 1.720000e-12 84.2
34 TraesCS5B01G497900 chr1A 84.010 813 86 23 1903 2684 309468396 309467597 0.000000e+00 741.0
35 TraesCS5B01G497900 chr1A 79.861 432 61 12 1 432 590556363 590556768 2.620000e-75 292.0
36 TraesCS5B01G497900 chr1A 74.549 499 109 15 1 491 497289244 497289732 4.540000e-48 202.0
37 TraesCS5B01G497900 chr1A 91.228 57 5 0 569 625 430534058 430534002 7.980000e-11 78.7
38 TraesCS5B01G497900 chr5D 81.635 795 76 28 1928 2684 551244566 551245328 1.780000e-166 595.0
39 TraesCS5B01G497900 chr5D 82.938 633 51 24 696 1299 528121448 528120844 3.970000e-143 518.0
40 TraesCS5B01G497900 chr5D 82.600 523 78 7 2179 2690 539037049 539036529 1.470000e-122 449.0
41 TraesCS5B01G497900 chr5D 81.373 306 45 7 1412 1705 528120760 528120455 3.460000e-59 239.0
42 TraesCS5B01G497900 chr5D 76.056 497 95 16 2 486 39088964 39089448 1.240000e-58 237.0
43 TraesCS5B01G497900 chr5D 82.456 285 33 15 1924 2204 515569191 515569462 1.610000e-57 233.0
44 TraesCS5B01G497900 chr5D 78.402 338 65 6 98 430 473927126 473926792 2.100000e-51 213.0
45 TraesCS5B01G497900 chr5D 89.474 57 5 1 569 624 560439558 560439502 1.340000e-08 71.3
46 TraesCS5B01G497900 chr7A 82.759 696 75 25 1963 2644 80572922 80572258 1.800000e-161 579.0
47 TraesCS5B01G497900 chr7A 91.111 90 7 1 486 574 616935542 616935453 1.310000e-23 121.0
48 TraesCS5B01G497900 chr7B 80.803 797 96 33 1914 2689 609182329 609181569 3.000000e-159 571.0
49 TraesCS5B01G497900 chr7B 73.108 502 111 18 1 491 684561910 684561422 9.970000e-35 158.0
50 TraesCS5B01G497900 chr6D 86.253 451 59 3 2236 2684 468007115 468006666 1.120000e-133 486.0
51 TraesCS5B01G497900 chr6D 75.348 503 99 19 1 491 360816821 360816332 4.510000e-53 219.0
52 TraesCS5B01G497900 chr2A 84.444 495 70 6 2197 2690 702184878 702184390 5.210000e-132 481.0
53 TraesCS5B01G497900 chr2A 84.402 468 63 2 2232 2690 139842140 139842606 4.080000e-123 451.0
54 TraesCS5B01G497900 chr6A 84.095 503 71 3 2196 2690 119192415 119191914 6.740000e-131 477.0
55 TraesCS5B01G497900 chr6A 85.339 457 64 3 2236 2690 614121203 614120748 1.130000e-128 470.0
56 TraesCS5B01G497900 chr6A 82.000 450 50 14 1914 2344 143977172 143976735 1.180000e-93 353.0
57 TraesCS5B01G497900 chr3D 81.770 565 90 6 2134 2690 12885870 12886429 6.790000e-126 460.0
58 TraesCS5B01G497900 chr3D 81.742 356 59 3 60 414 405814751 405815101 2.620000e-75 292.0
59 TraesCS5B01G497900 chr3D 78.453 362 43 19 133 491 149766488 149766817 1.260000e-48 204.0
60 TraesCS5B01G497900 chr3D 88.387 155 7 8 1898 2044 36536848 36536999 2.750000e-40 176.0
61 TraesCS5B01G497900 chr6B 92.800 250 18 0 1419 1668 644446539 644446290 1.970000e-96 363.0
62 TraesCS5B01G497900 chr6B 87.500 144 13 3 1731 1874 644421531 644421393 7.710000e-36 161.0
63 TraesCS5B01G497900 chr6B 90.217 92 8 1 484 574 699017469 699017560 4.700000e-23 119.0
64 TraesCS5B01G497900 chr1D 80.831 433 56 17 1 432 492412694 492413100 5.590000e-82 315.0
65 TraesCS5B01G497900 chr4A 77.798 554 86 28 1914 2441 433858571 433858029 9.350000e-80 307.0
66 TraesCS5B01G497900 chr4A 77.320 291 58 6 204 489 608055466 608055179 5.960000e-37 165.0
67 TraesCS5B01G497900 chr2B 83.396 265 33 10 1903 2157 541906177 541905914 4.480000e-58 235.0
68 TraesCS5B01G497900 chr4D 78.276 290 56 5 204 489 363566586 363566300 2.130000e-41 180.0
69 TraesCS5B01G497900 chr1B 79.151 259 47 7 210 466 669339856 669339603 3.560000e-39 172.0
70 TraesCS5B01G497900 chr1B 92.941 85 5 1 487 570 598878396 598878312 3.640000e-24 122.0
71 TraesCS5B01G497900 chr1B 95.122 41 0 2 586 625 597431528 597431489 2.240000e-06 63.9
72 TraesCS5B01G497900 chr3B 75.691 362 76 9 133 489 81482516 81482870 1.280000e-38 171.0
73 TraesCS5B01G497900 chr3A 76.471 323 69 6 174 491 521300501 521300181 4.610000e-38 169.0
74 TraesCS5B01G497900 chr3A 91.011 89 6 2 487 573 683351557 683351645 4.700000e-23 119.0
75 TraesCS5B01G497900 chr7D 90.110 91 7 2 487 575 75270893 75270803 1.690000e-22 117.0
76 TraesCS5B01G497900 chr7D 86.842 76 3 6 569 643 107507969 107508038 7.980000e-11 78.7
77 TraesCS5B01G497900 chr7D 87.719 57 4 3 571 625 624837559 624837504 2.240000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G497900 chr5B 664725808 664728497 2689 True 4968.0 4968 100.0000 1 2690 1 chr5B.!!$R2 2689
1 TraesCS5B01G497900 chr5B 508151230 508151757 527 False 490.0 490 83.9320 2179 2690 1 chr5B.!!$F1 511
2 TraesCS5B01G497900 chr5B 664804845 664805657 812 True 317.5 392 88.5300 993 1667 2 chr5B.!!$R6 674
3 TraesCS5B01G497900 chrUn 405885834 405886940 1106 False 1301.0 1301 87.8660 759 1906 1 chrUn.!!$F2 1147
4 TraesCS5B01G497900 chrUn 93026554 93027344 790 False 798.0 798 85.2870 1901 2682 1 chrUn.!!$F1 781
5 TraesCS5B01G497900 chrUn 68358154 68358681 527 True 734.0 734 91.9480 1382 1906 1 chrUn.!!$R1 524
6 TraesCS5B01G497900 chrUn 268243602 268244238 636 True 582.0 582 83.3820 698 1374 1 chrUn.!!$R2 676
7 TraesCS5B01G497900 chrUn 367156028 367156592 564 True 527.0 527 84.0630 2129 2680 1 chrUn.!!$R3 551
8 TraesCS5B01G497900 chrUn 410417137 410417676 539 False 313.0 313 78.0400 1914 2438 1 chrUn.!!$F3 524
9 TraesCS5B01G497900 chr5A 655644773 655645980 1207 True 1271.0 1271 86.1160 696 1901 1 chr5A.!!$R4 1205
10 TraesCS5B01G497900 chr5A 655727342 655728542 1200 True 1208.0 1208 85.2450 696 1906 1 chr5A.!!$R5 1210
11 TraesCS5B01G497900 chr5A 655798449 655799646 1197 True 1199.0 1199 85.1640 696 1906 1 chr5A.!!$R7 1210
12 TraesCS5B01G497900 chr5A 655870642 655871828 1186 True 1184.0 1184 85.0360 696 1906 1 chr5A.!!$R8 1210
13 TraesCS5B01G497900 chr5A 655862302 655863154 852 True 201.0 235 86.0075 698 1653 2 chr5A.!!$R10 955
14 TraesCS5B01G497900 chr2D 25325051 25325834 783 False 754.0 754 84.3090 1903 2690 1 chr2D.!!$F1 787
15 TraesCS5B01G497900 chr2D 7129110 7129648 538 False 270.6 457 88.3110 4 625 2 chr2D.!!$F4 621
16 TraesCS5B01G497900 chr1A 309467597 309468396 799 True 741.0 741 84.0100 1903 2684 1 chr1A.!!$R1 781
17 TraesCS5B01G497900 chr5D 551244566 551245328 762 False 595.0 595 81.6350 1928 2684 1 chr5D.!!$F3 756
18 TraesCS5B01G497900 chr5D 539036529 539037049 520 True 449.0 449 82.6000 2179 2690 1 chr5D.!!$R2 511
19 TraesCS5B01G497900 chr5D 528120455 528121448 993 True 378.5 518 82.1555 696 1705 2 chr5D.!!$R4 1009
20 TraesCS5B01G497900 chr7A 80572258 80572922 664 True 579.0 579 82.7590 1963 2644 1 chr7A.!!$R1 681
21 TraesCS5B01G497900 chr7B 609181569 609182329 760 True 571.0 571 80.8030 1914 2689 1 chr7B.!!$R1 775
22 TraesCS5B01G497900 chr6A 119191914 119192415 501 True 477.0 477 84.0950 2196 2690 1 chr6A.!!$R1 494
23 TraesCS5B01G497900 chr3D 12885870 12886429 559 False 460.0 460 81.7700 2134 2690 1 chr3D.!!$F1 556
24 TraesCS5B01G497900 chr4A 433858029 433858571 542 True 307.0 307 77.7980 1914 2441 1 chr4A.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 798 0.031585 TCCTGTTCCGTTCACGAGTG 59.968 55.0 0.0 0.0 43.02 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2959 0.45462 CGAGTAGCAGTTCTTCGCGT 60.455 55.0 5.77 0.0 32.55 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.642741 AAGCGGAGGGGATGGGACT 62.643 63.158 0.00 0.00 0.00 3.85
44 45 0.179062 GATGGGACTAGTGGCAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
46 47 1.990060 GGGACTAGTGGCAGCAGGA 60.990 63.158 0.00 0.00 0.00 3.86
55 56 3.426568 GCAGCAGGAGGTGTTCGC 61.427 66.667 0.00 0.00 44.89 4.70
65 66 1.446272 GGTGTTCGCGAAGGAGGAG 60.446 63.158 24.13 0.00 0.00 3.69
67 68 2.261671 GTTCGCGAAGGAGGAGCA 59.738 61.111 24.13 0.00 0.00 4.26
73 74 1.519246 CGAAGGAGGAGCAGCATGA 59.481 57.895 0.00 0.00 39.69 3.07
104 105 0.659427 TCGACAACGTCAAGTCTCGT 59.341 50.000 12.11 0.00 42.12 4.18
115 116 0.687354 AAGTCTCGTTGGCATGGAGT 59.313 50.000 13.06 0.00 0.00 3.85
125 127 1.522569 GCATGGAGTAGCGGGTCTT 59.477 57.895 0.00 0.00 0.00 3.01
128 130 0.617820 ATGGAGTAGCGGGTCTTGGT 60.618 55.000 0.00 0.00 0.00 3.67
135 137 3.077907 CGGGTCTTGGTGGTGGAT 58.922 61.111 0.00 0.00 0.00 3.41
146 148 1.677518 GGTGGTGGATGCGTGTTGATA 60.678 52.381 0.00 0.00 0.00 2.15
157 159 1.560923 GTGTTGATAGACGAGCGCAT 58.439 50.000 11.47 0.00 0.00 4.73
170 172 2.588596 CGCATGATGGTGGCGCTA 60.589 61.111 7.64 0.00 44.49 4.26
172 174 1.509644 CGCATGATGGTGGCGCTATT 61.510 55.000 7.64 0.00 44.49 1.73
174 176 1.601162 GCATGATGGTGGCGCTATTTG 60.601 52.381 7.64 1.54 0.00 2.32
175 177 1.001048 CATGATGGTGGCGCTATTTGG 60.001 52.381 7.64 0.00 0.00 3.28
176 178 1.360192 GATGGTGGCGCTATTTGGC 59.640 57.895 7.64 0.00 0.00 4.52
184 186 3.884900 GCTATTTGGCGTCGTGGT 58.115 55.556 0.00 0.00 0.00 4.16
185 187 1.423845 GCTATTTGGCGTCGTGGTG 59.576 57.895 0.00 0.00 0.00 4.17
186 188 1.977594 GCTATTTGGCGTCGTGGTGG 61.978 60.000 0.00 0.00 0.00 4.61
187 189 0.672401 CTATTTGGCGTCGTGGTGGT 60.672 55.000 0.00 0.00 0.00 4.16
188 190 0.951525 TATTTGGCGTCGTGGTGGTG 60.952 55.000 0.00 0.00 0.00 4.17
189 191 2.951475 ATTTGGCGTCGTGGTGGTGT 62.951 55.000 0.00 0.00 0.00 4.16
190 192 4.595538 TGGCGTCGTGGTGGTGTC 62.596 66.667 0.00 0.00 0.00 3.67
192 194 4.634133 GCGTCGTGGTGGTGTCGA 62.634 66.667 0.00 0.00 0.00 4.20
193 195 2.728383 CGTCGTGGTGGTGTCGAC 60.728 66.667 9.11 9.11 46.57 4.20
195 197 3.450507 TCGTGGTGGTGTCGACAT 58.549 55.556 23.12 0.00 0.00 3.06
196 198 1.287815 TCGTGGTGGTGTCGACATC 59.712 57.895 23.12 22.57 0.00 3.06
197 199 1.006688 CGTGGTGGTGTCGACATCA 60.007 57.895 27.21 27.21 34.02 3.07
198 200 1.008875 CGTGGTGGTGTCGACATCAG 61.009 60.000 31.07 15.96 37.71 2.90
199 201 0.033504 GTGGTGGTGTCGACATCAGT 59.966 55.000 31.07 0.00 37.71 3.41
200 202 0.756294 TGGTGGTGTCGACATCAGTT 59.244 50.000 31.07 0.00 37.71 3.16
201 203 1.148310 GGTGGTGTCGACATCAGTTG 58.852 55.000 31.07 0.00 37.71 3.16
202 204 1.270094 GGTGGTGTCGACATCAGTTGA 60.270 52.381 31.07 6.73 37.71 3.18
203 205 2.061773 GTGGTGTCGACATCAGTTGAG 58.938 52.381 31.07 0.00 37.71 3.02
204 206 1.071605 GGTGTCGACATCAGTTGAGC 58.928 55.000 23.76 6.21 38.82 4.26
205 207 1.071605 GTGTCGACATCAGTTGAGCC 58.928 55.000 23.12 0.14 38.82 4.70
206 208 0.969149 TGTCGACATCAGTTGAGCCT 59.031 50.000 15.76 0.00 38.82 4.58
207 209 1.067565 TGTCGACATCAGTTGAGCCTC 60.068 52.381 15.76 0.00 38.82 4.70
208 210 0.171231 TCGACATCAGTTGAGCCTCG 59.829 55.000 0.00 0.00 33.17 4.63
209 211 1.416813 CGACATCAGTTGAGCCTCGC 61.417 60.000 0.00 0.00 0.00 5.03
210 212 0.390340 GACATCAGTTGAGCCTCGCA 60.390 55.000 0.00 0.00 0.00 5.10
211 213 0.035317 ACATCAGTTGAGCCTCGCAA 59.965 50.000 0.00 0.00 0.00 4.85
212 214 0.725686 CATCAGTTGAGCCTCGCAAG 59.274 55.000 0.00 0.00 0.00 4.01
213 215 0.392193 ATCAGTTGAGCCTCGCAAGG 60.392 55.000 0.00 0.00 46.44 3.61
214 216 1.302033 CAGTTGAGCCTCGCAAGGT 60.302 57.895 0.00 0.00 45.34 3.50
215 217 1.004440 AGTTGAGCCTCGCAAGGTC 60.004 57.895 0.00 0.00 45.34 3.85
216 218 2.048222 TTGAGCCTCGCAAGGTCG 60.048 61.111 0.00 0.00 45.34 4.79
217 219 2.570284 TTGAGCCTCGCAAGGTCGA 61.570 57.895 0.00 0.00 45.34 4.20
218 220 1.888436 TTGAGCCTCGCAAGGTCGAT 61.888 55.000 0.00 0.00 45.34 3.59
219 221 1.880340 GAGCCTCGCAAGGTCGATG 60.880 63.158 0.00 0.00 45.34 3.84
220 222 2.125512 GCCTCGCAAGGTCGATGT 60.126 61.111 0.00 0.00 45.34 3.06
221 223 2.456119 GCCTCGCAAGGTCGATGTG 61.456 63.158 0.00 0.00 45.34 3.21
222 224 1.079819 CCTCGCAAGGTCGATGTGT 60.080 57.895 0.00 0.00 37.94 3.72
223 225 1.078759 CCTCGCAAGGTCGATGTGTC 61.079 60.000 0.00 0.00 37.94 3.67
224 226 1.406219 CTCGCAAGGTCGATGTGTCG 61.406 60.000 0.00 0.00 43.67 4.35
225 227 2.812542 TCGCAAGGTCGATGTGTCGG 62.813 60.000 0.00 0.00 42.94 4.79
233 235 3.418675 CGATGTGTCGGTACTTGCT 57.581 52.632 0.00 0.00 44.00 3.91
234 236 1.269166 CGATGTGTCGGTACTTGCTC 58.731 55.000 0.00 0.00 44.00 4.26
235 237 1.135373 CGATGTGTCGGTACTTGCTCT 60.135 52.381 0.00 0.00 44.00 4.09
236 238 2.263077 GATGTGTCGGTACTTGCTCTG 58.737 52.381 0.00 0.00 0.00 3.35
237 239 1.324383 TGTGTCGGTACTTGCTCTGA 58.676 50.000 0.00 0.00 0.00 3.27
238 240 1.684450 TGTGTCGGTACTTGCTCTGAA 59.316 47.619 0.00 0.00 0.00 3.02
239 241 2.288213 TGTGTCGGTACTTGCTCTGAAG 60.288 50.000 0.00 0.00 0.00 3.02
240 242 2.030185 GTGTCGGTACTTGCTCTGAAGA 60.030 50.000 0.00 0.00 0.00 2.87
241 243 2.826128 TGTCGGTACTTGCTCTGAAGAT 59.174 45.455 0.00 0.00 0.00 2.40
242 244 3.182967 GTCGGTACTTGCTCTGAAGATG 58.817 50.000 0.00 0.00 0.00 2.90
243 245 2.166459 TCGGTACTTGCTCTGAAGATGG 59.834 50.000 0.00 0.00 0.00 3.51
244 246 2.166459 CGGTACTTGCTCTGAAGATGGA 59.834 50.000 0.00 0.00 0.00 3.41
245 247 3.181471 CGGTACTTGCTCTGAAGATGGAT 60.181 47.826 0.00 0.00 0.00 3.41
246 248 4.376146 GGTACTTGCTCTGAAGATGGATC 58.624 47.826 0.00 0.00 0.00 3.36
247 249 3.176552 ACTTGCTCTGAAGATGGATCG 57.823 47.619 0.00 0.00 0.00 3.69
248 250 2.158986 ACTTGCTCTGAAGATGGATCGG 60.159 50.000 0.00 0.00 0.00 4.18
249 251 1.489481 TGCTCTGAAGATGGATCGGT 58.511 50.000 0.00 0.00 0.00 4.69
250 252 1.137675 TGCTCTGAAGATGGATCGGTG 59.862 52.381 0.00 0.00 0.00 4.94
251 253 1.539929 GCTCTGAAGATGGATCGGTGG 60.540 57.143 0.00 0.00 0.00 4.61
252 254 2.034878 CTCTGAAGATGGATCGGTGGA 58.965 52.381 0.00 0.00 0.00 4.02
253 255 2.432146 CTCTGAAGATGGATCGGTGGAA 59.568 50.000 0.00 0.00 0.00 3.53
254 256 2.432146 TCTGAAGATGGATCGGTGGAAG 59.568 50.000 0.00 0.00 0.00 3.46
255 257 2.432146 CTGAAGATGGATCGGTGGAAGA 59.568 50.000 0.00 0.00 0.00 2.87
256 258 2.168521 TGAAGATGGATCGGTGGAAGAC 59.831 50.000 0.00 0.00 0.00 3.01
257 259 1.866015 AGATGGATCGGTGGAAGACA 58.134 50.000 0.00 0.00 0.00 3.41
258 260 1.759445 AGATGGATCGGTGGAAGACAG 59.241 52.381 0.00 0.00 0.00 3.51
259 261 1.482593 GATGGATCGGTGGAAGACAGT 59.517 52.381 0.00 0.00 0.00 3.55
260 262 0.608130 TGGATCGGTGGAAGACAGTG 59.392 55.000 0.00 0.00 0.00 3.66
261 263 0.108138 GGATCGGTGGAAGACAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
262 264 0.741221 GATCGGTGGAAGACAGTGGC 60.741 60.000 0.00 0.00 0.00 5.01
263 265 2.507110 ATCGGTGGAAGACAGTGGCG 62.507 60.000 0.00 0.00 0.00 5.69
264 266 2.358737 GGTGGAAGACAGTGGCGG 60.359 66.667 0.00 0.00 0.00 6.13
265 267 3.050275 GTGGAAGACAGTGGCGGC 61.050 66.667 0.00 0.00 0.00 6.53
266 268 4.680237 TGGAAGACAGTGGCGGCG 62.680 66.667 0.51 0.51 0.00 6.46
268 270 4.681978 GAAGACAGTGGCGGCGGT 62.682 66.667 9.78 1.94 0.00 5.68
269 271 4.681978 AAGACAGTGGCGGCGGTC 62.682 66.667 9.78 16.85 34.55 4.79
271 273 4.681978 GACAGTGGCGGCGGTCTT 62.682 66.667 9.78 0.00 32.26 3.01
272 274 4.250305 ACAGTGGCGGCGGTCTTT 62.250 61.111 9.78 0.00 0.00 2.52
273 275 3.726517 CAGTGGCGGCGGTCTTTG 61.727 66.667 9.78 0.00 0.00 2.77
280 282 4.389576 GGCGGTCTTTGCAGCGTG 62.390 66.667 0.00 0.00 39.49 5.34
313 315 3.423154 CTGAAAGTGCGCCGGACC 61.423 66.667 5.05 0.00 0.00 4.46
314 316 4.243008 TGAAAGTGCGCCGGACCA 62.243 61.111 5.05 0.00 0.00 4.02
315 317 3.423154 GAAAGTGCGCCGGACCAG 61.423 66.667 5.05 0.00 0.00 4.00
316 318 4.250305 AAAGTGCGCCGGACCAGT 62.250 61.111 5.05 0.00 0.00 4.00
317 319 4.988598 AAGTGCGCCGGACCAGTG 62.989 66.667 5.05 0.00 0.00 3.66
324 326 3.941188 CCGGACCAGTGTGTGCCT 61.941 66.667 0.00 0.00 0.00 4.75
325 327 2.357517 CGGACCAGTGTGTGCCTC 60.358 66.667 0.00 0.00 0.00 4.70
326 328 2.357517 GGACCAGTGTGTGCCTCG 60.358 66.667 0.00 0.00 0.00 4.63
327 329 2.357517 GACCAGTGTGTGCCTCGG 60.358 66.667 0.00 0.00 0.00 4.63
328 330 2.842462 ACCAGTGTGTGCCTCGGA 60.842 61.111 0.00 0.00 0.00 4.55
329 331 2.357517 CCAGTGTGTGCCTCGGAC 60.358 66.667 0.00 0.00 0.00 4.79
330 332 2.357517 CAGTGTGTGCCTCGGACC 60.358 66.667 0.00 0.00 0.00 4.46
331 333 3.626924 AGTGTGTGCCTCGGACCC 61.627 66.667 0.00 0.00 0.00 4.46
348 350 4.054825 CGGCAATGCGGCTTGGTT 62.055 61.111 0.00 0.00 38.27 3.67
349 351 2.432972 GGCAATGCGGCTTGGTTG 60.433 61.111 0.00 2.88 37.17 3.77
350 352 2.432972 GCAATGCGGCTTGGTTGG 60.433 61.111 0.00 0.00 0.00 3.77
351 353 2.262292 CAATGCGGCTTGGTTGGG 59.738 61.111 0.00 0.00 0.00 4.12
352 354 2.996734 AATGCGGCTTGGTTGGGG 60.997 61.111 0.00 0.00 0.00 4.96
357 359 3.984732 GGCTTGGTTGGGGCCTCT 61.985 66.667 3.07 0.00 42.31 3.69
358 360 2.677875 GCTTGGTTGGGGCCTCTG 60.678 66.667 3.07 0.00 0.00 3.35
359 361 2.036256 CTTGGTTGGGGCCTCTGG 59.964 66.667 3.07 0.00 0.00 3.86
374 376 3.251972 GCCTCTGGCTTTAGATGTTATGC 59.748 47.826 0.73 0.00 46.69 3.14
375 377 4.712476 CCTCTGGCTTTAGATGTTATGCT 58.288 43.478 0.00 0.00 0.00 3.79
376 378 5.128919 CCTCTGGCTTTAGATGTTATGCTT 58.871 41.667 0.00 0.00 0.00 3.91
377 379 5.591877 CCTCTGGCTTTAGATGTTATGCTTT 59.408 40.000 0.00 0.00 0.00 3.51
378 380 6.441093 TCTGGCTTTAGATGTTATGCTTTG 57.559 37.500 0.00 0.00 0.00 2.77
379 381 5.357878 TCTGGCTTTAGATGTTATGCTTTGG 59.642 40.000 0.00 0.00 0.00 3.28
380 382 5.016173 TGGCTTTAGATGTTATGCTTTGGT 58.984 37.500 0.00 0.00 0.00 3.67
381 383 5.105797 TGGCTTTAGATGTTATGCTTTGGTG 60.106 40.000 0.00 0.00 0.00 4.17
382 384 5.105756 GGCTTTAGATGTTATGCTTTGGTGT 60.106 40.000 0.00 0.00 0.00 4.16
383 385 5.801947 GCTTTAGATGTTATGCTTTGGTGTG 59.198 40.000 0.00 0.00 0.00 3.82
384 386 6.349280 GCTTTAGATGTTATGCTTTGGTGTGA 60.349 38.462 0.00 0.00 0.00 3.58
385 387 6.741992 TTAGATGTTATGCTTTGGTGTGAG 57.258 37.500 0.00 0.00 0.00 3.51
386 388 4.012374 AGATGTTATGCTTTGGTGTGAGG 58.988 43.478 0.00 0.00 0.00 3.86
387 389 3.222173 TGTTATGCTTTGGTGTGAGGT 57.778 42.857 0.00 0.00 0.00 3.85
388 390 3.561143 TGTTATGCTTTGGTGTGAGGTT 58.439 40.909 0.00 0.00 0.00 3.50
389 391 3.957497 TGTTATGCTTTGGTGTGAGGTTT 59.043 39.130 0.00 0.00 0.00 3.27
390 392 4.202101 TGTTATGCTTTGGTGTGAGGTTTG 60.202 41.667 0.00 0.00 0.00 2.93
391 393 1.110442 TGCTTTGGTGTGAGGTTTGG 58.890 50.000 0.00 0.00 0.00 3.28
392 394 0.389025 GCTTTGGTGTGAGGTTTGGG 59.611 55.000 0.00 0.00 0.00 4.12
393 395 1.775385 CTTTGGTGTGAGGTTTGGGT 58.225 50.000 0.00 0.00 0.00 4.51
394 396 2.938838 CTTTGGTGTGAGGTTTGGGTA 58.061 47.619 0.00 0.00 0.00 3.69
395 397 3.496331 CTTTGGTGTGAGGTTTGGGTAT 58.504 45.455 0.00 0.00 0.00 2.73
396 398 3.603965 TTGGTGTGAGGTTTGGGTATT 57.396 42.857 0.00 0.00 0.00 1.89
397 399 2.870175 TGGTGTGAGGTTTGGGTATTG 58.130 47.619 0.00 0.00 0.00 1.90
398 400 1.544246 GGTGTGAGGTTTGGGTATTGC 59.456 52.381 0.00 0.00 0.00 3.56
399 401 1.199097 GTGTGAGGTTTGGGTATTGCG 59.801 52.381 0.00 0.00 0.00 4.85
400 402 0.808755 GTGAGGTTTGGGTATTGCGG 59.191 55.000 0.00 0.00 0.00 5.69
401 403 0.963355 TGAGGTTTGGGTATTGCGGC 60.963 55.000 0.00 0.00 0.00 6.53
402 404 0.679960 GAGGTTTGGGTATTGCGGCT 60.680 55.000 0.00 0.00 0.00 5.52
403 405 0.679960 AGGTTTGGGTATTGCGGCTC 60.680 55.000 0.00 0.00 0.00 4.70
404 406 0.963355 GGTTTGGGTATTGCGGCTCA 60.963 55.000 0.00 0.00 0.00 4.26
405 407 0.451783 GTTTGGGTATTGCGGCTCAG 59.548 55.000 0.00 0.00 0.00 3.35
406 408 0.326595 TTTGGGTATTGCGGCTCAGA 59.673 50.000 0.00 0.00 0.00 3.27
407 409 0.546122 TTGGGTATTGCGGCTCAGAT 59.454 50.000 0.00 0.00 0.00 2.90
408 410 1.419381 TGGGTATTGCGGCTCAGATA 58.581 50.000 0.00 0.00 0.00 1.98
409 411 1.765904 TGGGTATTGCGGCTCAGATAA 59.234 47.619 0.00 0.00 0.00 1.75
410 412 2.371841 TGGGTATTGCGGCTCAGATAAT 59.628 45.455 0.00 0.00 0.00 1.28
411 413 3.003480 GGGTATTGCGGCTCAGATAATC 58.997 50.000 0.00 0.00 0.00 1.75
412 414 3.307059 GGGTATTGCGGCTCAGATAATCT 60.307 47.826 0.00 0.00 0.00 2.40
413 415 3.681897 GGTATTGCGGCTCAGATAATCTG 59.318 47.826 0.00 0.00 45.59 2.90
414 416 1.586422 TTGCGGCTCAGATAATCTGC 58.414 50.000 0.00 0.00 43.95 4.26
415 417 0.250038 TGCGGCTCAGATAATCTGCC 60.250 55.000 0.00 0.15 43.95 4.85
416 418 0.034616 GCGGCTCAGATAATCTGCCT 59.965 55.000 4.40 0.00 43.95 4.75
417 419 1.938926 GCGGCTCAGATAATCTGCCTC 60.939 57.143 4.40 0.00 43.95 4.70
418 420 1.337635 CGGCTCAGATAATCTGCCTCC 60.338 57.143 4.40 4.75 43.95 4.30
419 421 1.003003 GGCTCAGATAATCTGCCTCCC 59.997 57.143 0.00 0.00 43.95 4.30
420 422 1.977129 GCTCAGATAATCTGCCTCCCT 59.023 52.381 0.00 0.00 43.95 4.20
421 423 2.371510 GCTCAGATAATCTGCCTCCCTT 59.628 50.000 0.00 0.00 43.95 3.95
422 424 3.556843 GCTCAGATAATCTGCCTCCCTTC 60.557 52.174 0.00 0.00 43.95 3.46
423 425 3.645212 CTCAGATAATCTGCCTCCCTTCA 59.355 47.826 0.00 0.00 43.95 3.02
424 426 4.237843 TCAGATAATCTGCCTCCCTTCAT 58.762 43.478 0.00 0.00 43.95 2.57
425 427 4.285517 TCAGATAATCTGCCTCCCTTCATC 59.714 45.833 0.00 0.00 43.95 2.92
426 428 4.041321 CAGATAATCTGCCTCCCTTCATCA 59.959 45.833 0.00 0.00 37.72 3.07
427 429 4.662179 AGATAATCTGCCTCCCTTCATCAA 59.338 41.667 0.00 0.00 0.00 2.57
428 430 3.294038 AATCTGCCTCCCTTCATCAAG 57.706 47.619 0.00 0.00 0.00 3.02
429 431 1.661463 TCTGCCTCCCTTCATCAAGT 58.339 50.000 0.00 0.00 0.00 3.16
430 432 1.988107 TCTGCCTCCCTTCATCAAGTT 59.012 47.619 0.00 0.00 0.00 2.66
431 433 2.089980 CTGCCTCCCTTCATCAAGTTG 58.910 52.381 0.00 0.00 0.00 3.16
432 434 1.704628 TGCCTCCCTTCATCAAGTTGA 59.295 47.619 8.27 8.27 0.00 3.18
433 435 2.309755 TGCCTCCCTTCATCAAGTTGAT 59.690 45.455 12.75 12.75 37.65 2.57
434 436 3.523157 TGCCTCCCTTCATCAAGTTGATA 59.477 43.478 17.86 3.20 34.28 2.15
435 437 4.133078 GCCTCCCTTCATCAAGTTGATAG 58.867 47.826 17.86 12.48 34.28 2.08
436 438 4.141620 GCCTCCCTTCATCAAGTTGATAGA 60.142 45.833 17.86 14.15 34.28 1.98
437 439 5.630069 GCCTCCCTTCATCAAGTTGATAGAA 60.630 44.000 17.86 19.30 34.28 2.10
438 440 6.418101 CCTCCCTTCATCAAGTTGATAGAAA 58.582 40.000 17.86 11.44 34.28 2.52
439 441 7.059156 CCTCCCTTCATCAAGTTGATAGAAAT 58.941 38.462 17.86 0.00 34.28 2.17
440 442 8.213679 CCTCCCTTCATCAAGTTGATAGAAATA 58.786 37.037 17.86 10.37 34.28 1.40
441 443 9.270640 CTCCCTTCATCAAGTTGATAGAAATAG 57.729 37.037 17.86 14.40 34.28 1.73
442 444 7.716998 TCCCTTCATCAAGTTGATAGAAATAGC 59.283 37.037 17.86 0.00 34.28 2.97
443 445 7.307632 CCCTTCATCAAGTTGATAGAAATAGCG 60.308 40.741 17.86 10.80 34.28 4.26
444 446 7.439356 CCTTCATCAAGTTGATAGAAATAGCGA 59.561 37.037 17.86 5.48 34.28 4.93
445 447 7.700322 TCATCAAGTTGATAGAAATAGCGAC 57.300 36.000 17.86 0.00 34.28 5.19
446 448 7.264947 TCATCAAGTTGATAGAAATAGCGACA 58.735 34.615 17.86 0.00 34.28 4.35
447 449 7.436376 TCATCAAGTTGATAGAAATAGCGACAG 59.564 37.037 17.86 1.42 34.28 3.51
448 450 6.863275 TCAAGTTGATAGAAATAGCGACAGA 58.137 36.000 0.08 0.00 0.00 3.41
449 451 7.492524 TCAAGTTGATAGAAATAGCGACAGAT 58.507 34.615 0.08 0.00 0.00 2.90
450 452 7.436376 TCAAGTTGATAGAAATAGCGACAGATG 59.564 37.037 0.08 0.00 0.00 2.90
451 453 6.810911 AGTTGATAGAAATAGCGACAGATGT 58.189 36.000 0.00 0.00 0.00 3.06
452 454 7.268586 AGTTGATAGAAATAGCGACAGATGTT 58.731 34.615 0.00 0.00 0.00 2.71
453 455 8.414003 AGTTGATAGAAATAGCGACAGATGTTA 58.586 33.333 0.00 0.00 0.00 2.41
454 456 8.480853 GTTGATAGAAATAGCGACAGATGTTAC 58.519 37.037 0.00 0.00 0.00 2.50
455 457 7.941919 TGATAGAAATAGCGACAGATGTTACT 58.058 34.615 0.00 0.00 0.00 2.24
456 458 7.862873 TGATAGAAATAGCGACAGATGTTACTG 59.137 37.037 0.00 0.00 42.78 2.74
457 459 6.208988 AGAAATAGCGACAGATGTTACTGA 57.791 37.500 0.00 0.00 40.63 3.41
458 460 6.269315 AGAAATAGCGACAGATGTTACTGAG 58.731 40.000 0.00 0.00 40.63 3.35
459 461 5.836821 AATAGCGACAGATGTTACTGAGA 57.163 39.130 0.00 0.00 40.63 3.27
460 462 6.398234 AATAGCGACAGATGTTACTGAGAT 57.602 37.500 0.00 0.00 40.63 2.75
461 463 4.039151 AGCGACAGATGTTACTGAGATG 57.961 45.455 0.00 0.00 40.63 2.90
462 464 3.119291 GCGACAGATGTTACTGAGATGG 58.881 50.000 0.00 0.00 40.63 3.51
463 465 3.429547 GCGACAGATGTTACTGAGATGGT 60.430 47.826 0.00 0.00 40.63 3.55
464 466 4.108336 CGACAGATGTTACTGAGATGGTG 58.892 47.826 0.00 0.00 40.63 4.17
465 467 4.437239 GACAGATGTTACTGAGATGGTGG 58.563 47.826 0.00 0.00 40.63 4.61
466 468 3.201290 CAGATGTTACTGAGATGGTGGC 58.799 50.000 0.00 0.00 39.94 5.01
467 469 3.110705 AGATGTTACTGAGATGGTGGCT 58.889 45.455 0.00 0.00 0.00 4.75
468 470 3.521126 AGATGTTACTGAGATGGTGGCTT 59.479 43.478 0.00 0.00 0.00 4.35
469 471 3.334583 TGTTACTGAGATGGTGGCTTC 57.665 47.619 0.00 0.00 0.00 3.86
470 472 2.637382 TGTTACTGAGATGGTGGCTTCA 59.363 45.455 0.00 0.00 0.00 3.02
471 473 3.265791 GTTACTGAGATGGTGGCTTCAG 58.734 50.000 0.00 0.00 0.00 3.02
472 474 1.649321 ACTGAGATGGTGGCTTCAGA 58.351 50.000 7.29 0.00 0.00 3.27
473 475 1.277557 ACTGAGATGGTGGCTTCAGAC 59.722 52.381 7.29 0.00 0.00 3.51
474 476 1.554160 CTGAGATGGTGGCTTCAGACT 59.446 52.381 0.00 0.00 0.00 3.24
475 477 1.980765 TGAGATGGTGGCTTCAGACTT 59.019 47.619 0.00 0.00 0.00 3.01
476 478 3.173151 TGAGATGGTGGCTTCAGACTTA 58.827 45.455 0.00 0.00 0.00 2.24
477 479 3.776969 TGAGATGGTGGCTTCAGACTTAT 59.223 43.478 0.00 0.00 0.00 1.73
478 480 4.225942 TGAGATGGTGGCTTCAGACTTATT 59.774 41.667 0.00 0.00 0.00 1.40
479 481 5.425217 TGAGATGGTGGCTTCAGACTTATTA 59.575 40.000 0.00 0.00 0.00 0.98
480 482 6.070251 TGAGATGGTGGCTTCAGACTTATTAA 60.070 38.462 0.00 0.00 0.00 1.40
481 483 6.904626 AGATGGTGGCTTCAGACTTATTAAT 58.095 36.000 0.00 0.00 0.00 1.40
482 484 6.769822 AGATGGTGGCTTCAGACTTATTAATG 59.230 38.462 0.00 0.00 0.00 1.90
483 485 5.815581 TGGTGGCTTCAGACTTATTAATGT 58.184 37.500 0.00 0.00 0.00 2.71
484 486 6.953101 TGGTGGCTTCAGACTTATTAATGTA 58.047 36.000 0.00 0.00 0.00 2.29
485 487 7.573710 TGGTGGCTTCAGACTTATTAATGTAT 58.426 34.615 0.00 0.00 0.00 2.29
486 488 8.052748 TGGTGGCTTCAGACTTATTAATGTATT 58.947 33.333 0.00 0.00 0.00 1.89
487 489 9.555727 GGTGGCTTCAGACTTATTAATGTATTA 57.444 33.333 0.00 0.00 0.00 0.98
513 515 8.816894 ACTTCCTCTGTCTCAAATATAAGAACA 58.183 33.333 0.00 0.00 0.00 3.18
514 516 9.829507 CTTCCTCTGTCTCAAATATAAGAACAT 57.170 33.333 0.00 0.00 0.00 2.71
564 566 9.751542 AAACGTTCTTATATTATGAGACAGAGG 57.248 33.333 0.00 0.00 0.00 3.69
565 567 7.887381 ACGTTCTTATATTATGAGACAGAGGG 58.113 38.462 0.00 0.00 0.00 4.30
566 568 7.724506 ACGTTCTTATATTATGAGACAGAGGGA 59.275 37.037 0.00 0.00 0.00 4.20
567 569 8.240682 CGTTCTTATATTATGAGACAGAGGGAG 58.759 40.741 0.00 0.00 0.00 4.30
568 570 9.084533 GTTCTTATATTATGAGACAGAGGGAGT 57.915 37.037 0.00 0.00 0.00 3.85
570 572 9.742144 TCTTATATTATGAGACAGAGGGAGTAC 57.258 37.037 0.00 0.00 0.00 2.73
571 573 9.747898 CTTATATTATGAGACAGAGGGAGTACT 57.252 37.037 0.00 0.00 0.00 2.73
574 576 7.741554 ATTATGAGACAGAGGGAGTACTTTT 57.258 36.000 0.00 0.00 0.00 2.27
575 577 7.554959 TTATGAGACAGAGGGAGTACTTTTT 57.445 36.000 0.00 0.00 0.00 1.94
576 578 8.660295 TTATGAGACAGAGGGAGTACTTTTTA 57.340 34.615 0.00 0.00 0.00 1.52
577 579 6.989155 TGAGACAGAGGGAGTACTTTTTAA 57.011 37.500 0.00 0.00 0.00 1.52
578 580 6.994221 TGAGACAGAGGGAGTACTTTTTAAG 58.006 40.000 0.00 0.00 0.00 1.85
579 581 6.781014 TGAGACAGAGGGAGTACTTTTTAAGA 59.219 38.462 0.00 0.00 0.00 2.10
580 582 7.455008 TGAGACAGAGGGAGTACTTTTTAAGAT 59.545 37.037 0.00 0.00 0.00 2.40
581 583 7.842982 AGACAGAGGGAGTACTTTTTAAGATC 58.157 38.462 0.00 0.00 0.00 2.75
582 584 7.676468 AGACAGAGGGAGTACTTTTTAAGATCT 59.324 37.037 0.00 0.00 0.00 2.75
583 585 8.208575 ACAGAGGGAGTACTTTTTAAGATCTT 57.791 34.615 13.56 13.56 0.00 2.40
584 586 8.097662 ACAGAGGGAGTACTTTTTAAGATCTTG 58.902 37.037 18.47 3.21 0.00 3.02
585 587 8.314751 CAGAGGGAGTACTTTTTAAGATCTTGA 58.685 37.037 18.47 7.07 0.00 3.02
586 588 9.052365 AGAGGGAGTACTTTTTAAGATCTTGAT 57.948 33.333 18.47 0.00 0.00 2.57
587 589 9.103861 GAGGGAGTACTTTTTAAGATCTTGATG 57.896 37.037 18.47 8.48 0.00 3.07
588 590 8.826765 AGGGAGTACTTTTTAAGATCTTGATGA 58.173 33.333 18.47 0.00 0.00 2.92
589 591 9.449719 GGGAGTACTTTTTAAGATCTTGATGAA 57.550 33.333 18.47 7.20 0.00 2.57
631 633 3.425122 ATCGCCATGATGGAATGCA 57.575 47.368 17.22 0.00 40.96 3.96
632 634 1.244816 ATCGCCATGATGGAATGCAG 58.755 50.000 17.22 0.00 40.96 4.41
633 635 0.180878 TCGCCATGATGGAATGCAGA 59.819 50.000 17.22 1.11 40.96 4.26
634 636 0.591659 CGCCATGATGGAATGCAGAG 59.408 55.000 17.22 0.00 40.96 3.35
635 637 0.959553 GCCATGATGGAATGCAGAGG 59.040 55.000 17.22 0.00 40.96 3.69
636 638 0.959553 CCATGATGGAATGCAGAGGC 59.040 55.000 5.27 0.00 40.96 4.70
637 639 0.959553 CATGATGGAATGCAGAGGCC 59.040 55.000 0.00 0.00 40.13 5.19
638 640 0.536687 ATGATGGAATGCAGAGGCCG 60.537 55.000 0.00 0.00 40.13 6.13
639 641 1.146930 GATGGAATGCAGAGGCCGA 59.853 57.895 0.00 0.00 40.13 5.54
640 642 0.883814 GATGGAATGCAGAGGCCGAG 60.884 60.000 0.00 0.00 40.13 4.63
641 643 2.203126 GGAATGCAGAGGCCGAGG 60.203 66.667 0.00 0.00 40.13 4.63
642 644 2.586792 GAATGCAGAGGCCGAGGT 59.413 61.111 0.00 0.00 40.13 3.85
643 645 1.817099 GAATGCAGAGGCCGAGGTG 60.817 63.158 0.00 0.00 40.13 4.00
644 646 2.527951 GAATGCAGAGGCCGAGGTGT 62.528 60.000 0.00 0.00 40.13 4.16
645 647 2.129555 AATGCAGAGGCCGAGGTGTT 62.130 55.000 0.00 0.00 40.13 3.32
646 648 2.743928 GCAGAGGCCGAGGTGTTG 60.744 66.667 0.00 0.00 0.00 3.33
647 649 2.046892 CAGAGGCCGAGGTGTTGG 60.047 66.667 0.00 0.00 0.00 3.77
648 650 2.203788 AGAGGCCGAGGTGTTGGA 60.204 61.111 0.00 0.00 0.00 3.53
649 651 1.613630 AGAGGCCGAGGTGTTGGAT 60.614 57.895 0.00 0.00 0.00 3.41
650 652 0.325296 AGAGGCCGAGGTGTTGGATA 60.325 55.000 0.00 0.00 0.00 2.59
651 653 0.759346 GAGGCCGAGGTGTTGGATAT 59.241 55.000 0.00 0.00 0.00 1.63
652 654 1.141053 GAGGCCGAGGTGTTGGATATT 59.859 52.381 0.00 0.00 0.00 1.28
653 655 1.141053 AGGCCGAGGTGTTGGATATTC 59.859 52.381 0.00 0.00 0.00 1.75
654 656 1.594331 GCCGAGGTGTTGGATATTCC 58.406 55.000 0.00 0.00 36.96 3.01
655 657 1.134220 GCCGAGGTGTTGGATATTCCA 60.134 52.381 0.00 0.00 46.61 3.53
668 670 6.713762 TGGATATTCCATGATTTCCAACAC 57.286 37.500 0.00 0.00 42.67 3.32
669 671 5.299028 TGGATATTCCATGATTTCCAACACG 59.701 40.000 0.00 0.00 42.67 4.49
670 672 5.299279 GGATATTCCATGATTTCCAACACGT 59.701 40.000 0.00 0.00 36.28 4.49
671 673 3.913548 TTCCATGATTTCCAACACGTG 57.086 42.857 15.48 15.48 0.00 4.49
672 674 9.540551 GGATATTCCATGATTTCCAACACGTGG 62.541 44.444 21.57 1.66 42.09 4.94
679 681 3.981308 CCAACACGTGGGTCATCC 58.019 61.111 21.57 0.00 44.64 3.51
680 682 1.374947 CCAACACGTGGGTCATCCT 59.625 57.895 21.57 0.00 44.64 3.24
681 683 0.673644 CCAACACGTGGGTCATCCTC 60.674 60.000 21.57 0.00 44.64 3.71
682 684 0.673644 CAACACGTGGGTCATCCTCC 60.674 60.000 21.57 0.00 36.20 4.30
683 685 0.836400 AACACGTGGGTCATCCTCCT 60.836 55.000 21.57 0.00 36.20 3.69
684 686 0.836400 ACACGTGGGTCATCCTCCTT 60.836 55.000 21.57 0.00 36.20 3.36
685 687 0.324943 CACGTGGGTCATCCTCCTTT 59.675 55.000 7.95 0.00 36.20 3.11
686 688 1.064825 ACGTGGGTCATCCTCCTTTT 58.935 50.000 0.00 0.00 36.20 2.27
687 689 1.423921 ACGTGGGTCATCCTCCTTTTT 59.576 47.619 0.00 0.00 36.20 1.94
688 690 1.812571 CGTGGGTCATCCTCCTTTTTG 59.187 52.381 0.00 0.00 36.20 2.44
689 691 2.552155 CGTGGGTCATCCTCCTTTTTGA 60.552 50.000 0.00 0.00 36.20 2.69
690 692 3.496331 GTGGGTCATCCTCCTTTTTGAA 58.504 45.455 0.00 0.00 36.20 2.69
691 693 3.895041 GTGGGTCATCCTCCTTTTTGAAA 59.105 43.478 0.00 0.00 36.20 2.69
692 694 4.343814 GTGGGTCATCCTCCTTTTTGAAAA 59.656 41.667 0.00 0.00 36.20 2.29
693 695 4.965532 TGGGTCATCCTCCTTTTTGAAAAA 59.034 37.500 2.83 2.83 36.20 1.94
712 714 2.550830 AAAGCTGTGAATCCGTGAGT 57.449 45.000 0.00 0.00 0.00 3.41
721 723 4.466370 TGTGAATCCGTGAGTAGGAGAAAT 59.534 41.667 0.00 0.00 41.66 2.17
750 771 3.988976 TGACCAATCAGGAGAAGAAGG 57.011 47.619 0.00 0.00 41.22 3.46
751 772 3.520696 TGACCAATCAGGAGAAGAAGGA 58.479 45.455 0.00 0.00 41.22 3.36
752 773 4.107072 TGACCAATCAGGAGAAGAAGGAT 58.893 43.478 0.00 0.00 41.22 3.24
753 774 4.080695 TGACCAATCAGGAGAAGAAGGATG 60.081 45.833 0.00 0.00 41.22 3.51
754 775 3.848975 ACCAATCAGGAGAAGAAGGATGT 59.151 43.478 0.00 0.00 41.22 3.06
755 776 4.290722 ACCAATCAGGAGAAGAAGGATGTT 59.709 41.667 0.00 0.00 41.22 2.71
756 777 4.880696 CCAATCAGGAGAAGAAGGATGTTC 59.119 45.833 0.00 0.00 41.22 3.18
774 798 0.031585 TCCTGTTCCGTTCACGAGTG 59.968 55.000 0.00 0.00 43.02 3.51
798 826 1.652329 GCCGTACGTGTCCGATACG 60.652 63.158 15.21 15.25 46.31 3.06
814 842 1.167851 TACGGACTCAACCCACGTAG 58.832 55.000 0.00 0.00 38.79 3.51
916 944 4.624364 CAGCACCTCCCACGCACA 62.624 66.667 0.00 0.00 0.00 4.57
917 945 4.626081 AGCACCTCCCACGCACAC 62.626 66.667 0.00 0.00 0.00 3.82
944 986 4.568359 CGCTTGACTACGTACCTAGAGTTA 59.432 45.833 5.97 0.00 0.00 2.24
945 987 5.236047 CGCTTGACTACGTACCTAGAGTTAT 59.764 44.000 5.97 0.00 0.00 1.89
950 992 5.380900 ACTACGTACCTAGAGTTATTCCCC 58.619 45.833 5.97 0.00 0.00 4.81
957 999 0.822164 AGAGTTATTCCCCGTCCGTG 59.178 55.000 0.00 0.00 0.00 4.94
966 1008 2.736682 CCCGTCCGTGTTTGATCGC 61.737 63.158 0.00 0.00 0.00 4.58
1150 1211 0.106469 TGAGGATGACGAGGAGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
1235 1296 2.641305 GCTCAAGCTGGACATGAAGAT 58.359 47.619 0.00 0.00 38.21 2.40
1328 1401 2.949106 GTCGGACGACGTCAAGGA 59.051 61.111 27.77 18.41 44.69 3.36
1333 1406 1.507174 GACGACGTCAAGGAGGAGG 59.493 63.158 22.66 0.00 32.09 4.30
1334 1407 0.959372 GACGACGTCAAGGAGGAGGA 60.959 60.000 22.66 0.00 32.09 3.71
1335 1408 0.961358 ACGACGTCAAGGAGGAGGAG 60.961 60.000 17.16 0.00 0.00 3.69
1338 1411 0.336737 ACGTCAAGGAGGAGGAGGAT 59.663 55.000 0.00 0.00 0.00 3.24
1341 1414 2.038659 GTCAAGGAGGAGGAGGATGAG 58.961 57.143 0.00 0.00 0.00 2.90
1351 1535 0.824182 GGAGGATGAGGACGACGGAT 60.824 60.000 0.00 0.00 0.00 4.18
1377 1570 0.985490 ATGCCAAGGAGGAGGAGGAC 60.985 60.000 0.00 0.00 41.22 3.85
1387 1580 2.045143 AGGAGGACGACGAGGACC 60.045 66.667 0.00 0.00 0.00 4.46
1388 1581 2.045143 GGAGGACGACGAGGACCT 60.045 66.667 0.00 0.00 34.48 3.85
1425 1675 0.556380 AGGAGGAGGAGGAGGAGGAA 60.556 60.000 0.00 0.00 0.00 3.36
1426 1676 0.105709 GGAGGAGGAGGAGGAGGAAG 60.106 65.000 0.00 0.00 0.00 3.46
1427 1677 0.930726 GAGGAGGAGGAGGAGGAAGA 59.069 60.000 0.00 0.00 0.00 2.87
1428 1678 0.933700 AGGAGGAGGAGGAGGAAGAG 59.066 60.000 0.00 0.00 0.00 2.85
1429 1679 0.105709 GGAGGAGGAGGAGGAAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
1430 1680 0.930726 GAGGAGGAGGAGGAAGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
1440 1690 2.182030 GAAGAGGAGACCACCGCG 59.818 66.667 0.00 0.00 35.00 6.46
1475 1725 1.094785 GACATGTACGCCAAAGCCAT 58.905 50.000 0.00 0.00 34.57 4.40
1608 1908 1.137825 GAAGGAGCTCGACGACAGG 59.862 63.158 7.83 0.00 0.00 4.00
1716 2029 5.587043 TCAACAAATTTGCGTATAGGGTAGG 59.413 40.000 18.12 0.00 0.00 3.18
1717 2030 5.106876 ACAAATTTGCGTATAGGGTAGGT 57.893 39.130 18.12 0.00 0.00 3.08
1719 2032 6.285990 ACAAATTTGCGTATAGGGTAGGTAG 58.714 40.000 18.12 0.00 0.00 3.18
1721 2034 2.662535 TGCGTATAGGGTAGGTAGCA 57.337 50.000 0.00 0.00 0.00 3.49
1722 2035 2.948115 TGCGTATAGGGTAGGTAGCAA 58.052 47.619 0.00 0.00 0.00 3.91
1723 2036 3.298619 TGCGTATAGGGTAGGTAGCAAA 58.701 45.455 0.00 0.00 0.00 3.68
1724 2037 3.068590 TGCGTATAGGGTAGGTAGCAAAC 59.931 47.826 0.00 0.00 0.00 2.93
1725 2038 3.068590 GCGTATAGGGTAGGTAGCAAACA 59.931 47.826 0.00 0.00 0.00 2.83
1726 2039 4.262335 GCGTATAGGGTAGGTAGCAAACAT 60.262 45.833 0.00 0.00 0.00 2.71
1727 2040 5.467705 CGTATAGGGTAGGTAGCAAACATC 58.532 45.833 0.00 0.00 0.00 3.06
1728 2041 5.243283 CGTATAGGGTAGGTAGCAAACATCT 59.757 44.000 0.00 0.00 0.00 2.90
1729 2042 6.432162 CGTATAGGGTAGGTAGCAAACATCTA 59.568 42.308 0.00 0.00 0.00 1.98
1750 2068 9.722184 CATCTAATCTAATCTATGCATATGGGG 57.278 37.037 6.92 0.00 0.00 4.96
1766 2084 6.546034 GCATATGGGGTTGTGAAATTAGTAGT 59.454 38.462 4.56 0.00 0.00 2.73
1861 2179 3.870723 TGTAATTCGACAAGCACACAC 57.129 42.857 0.00 0.00 0.00 3.82
1906 2233 3.506455 CACTTCGTTCCACTCCTCTAAGA 59.494 47.826 0.00 0.00 0.00 2.10
1908 2235 3.150458 TCGTTCCACTCCTCTAAGACA 57.850 47.619 0.00 0.00 0.00 3.41
1911 2238 3.697045 CGTTCCACTCCTCTAAGACATCT 59.303 47.826 0.00 0.00 0.00 2.90
1912 2239 4.201970 CGTTCCACTCCTCTAAGACATCTC 60.202 50.000 0.00 0.00 0.00 2.75
2060 2397 4.610456 CGCGCTACATTTGTTCTCTTTTCA 60.610 41.667 5.56 0.00 0.00 2.69
2070 2407 7.605410 TTTGTTCTCTTTTCAACTACGACTT 57.395 32.000 0.00 0.00 0.00 3.01
2107 2444 5.357314 GCTCCGACTGTATAGGCATAGATAA 59.643 44.000 0.00 0.00 0.00 1.75
2110 2447 7.600065 TCCGACTGTATAGGCATAGATAAAAC 58.400 38.462 0.00 0.00 0.00 2.43
2442 2959 1.696674 TCCTCTCCGCCCTCCTCTA 60.697 63.158 0.00 0.00 0.00 2.43
2457 2974 1.400846 CCTCTACGCGAAGAACTGCTA 59.599 52.381 15.93 0.00 0.00 3.49
2489 3006 2.125269 CCTACGGGAAGCGTTGGG 60.125 66.667 0.00 0.00 33.58 4.12
2528 3046 1.152756 TCATCCATCTCGGCGAGGA 60.153 57.895 33.93 25.45 33.14 3.71
2541 3063 2.496817 GAGGATGAGACGGCGCTT 59.503 61.111 6.90 0.00 0.00 4.68
2644 3178 2.057922 ACCACAGGGAAGTTCATGTCT 58.942 47.619 5.01 0.00 38.05 3.41
2647 3181 3.594134 CACAGGGAAGTTCATGTCTCTC 58.406 50.000 5.01 0.00 0.00 3.20
2655 3189 0.252057 TTCATGTCTCTCCGGGACCA 60.252 55.000 0.00 0.00 33.22 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.079503 CGCTTGCAGTTCCTCTAACC 58.920 55.000 0.00 0.00 39.03 2.85
1 2 1.079503 CCGCTTGCAGTTCCTCTAAC 58.920 55.000 0.00 0.00 38.46 2.34
16 17 2.664835 CTAGTCCCATCCCCTCCGCT 62.665 65.000 0.00 0.00 0.00 5.52
33 34 1.127567 AACACCTCCTGCTGCCACTA 61.128 55.000 0.00 0.00 0.00 2.74
44 45 1.446272 CTCCTTCGCGAACACCTCC 60.446 63.158 19.38 0.00 0.00 4.30
46 47 1.878656 CTCCTCCTTCGCGAACACCT 61.879 60.000 19.38 0.00 0.00 4.00
55 56 0.809241 GTCATGCTGCTCCTCCTTCG 60.809 60.000 0.00 0.00 0.00 3.79
65 66 1.432251 GTGCCAGATGTCATGCTGC 59.568 57.895 0.00 0.00 0.00 5.25
67 68 0.742281 GACGTGCCAGATGTCATGCT 60.742 55.000 0.00 0.00 40.01 3.79
73 74 0.944311 GTTGTCGACGTGCCAGATGT 60.944 55.000 11.62 0.00 0.00 3.06
94 95 0.684535 TCCATGCCAACGAGACTTGA 59.315 50.000 0.00 0.00 0.00 3.02
95 96 1.081892 CTCCATGCCAACGAGACTTG 58.918 55.000 0.00 0.00 0.00 3.16
96 97 0.687354 ACTCCATGCCAACGAGACTT 59.313 50.000 3.31 0.00 0.00 3.01
97 98 1.478510 CTACTCCATGCCAACGAGACT 59.521 52.381 3.31 0.00 0.00 3.24
104 105 2.252072 GACCCGCTACTCCATGCCAA 62.252 60.000 0.00 0.00 0.00 4.52
105 106 2.687200 ACCCGCTACTCCATGCCA 60.687 61.111 0.00 0.00 0.00 4.92
107 108 0.811616 CAAGACCCGCTACTCCATGC 60.812 60.000 0.00 0.00 0.00 4.06
115 116 2.589157 CCACCACCAAGACCCGCTA 61.589 63.158 0.00 0.00 0.00 4.26
125 127 1.896183 CAACACGCATCCACCACCA 60.896 57.895 0.00 0.00 0.00 4.17
128 130 1.552792 TCTATCAACACGCATCCACCA 59.447 47.619 0.00 0.00 0.00 4.17
135 137 0.796870 CGCTCGTCTATCAACACGCA 60.797 55.000 0.00 0.00 35.93 5.24
146 148 1.520120 CACCATCATGCGCTCGTCT 60.520 57.895 9.73 0.00 0.00 4.18
157 159 1.383456 GCCAAATAGCGCCACCATCA 61.383 55.000 2.29 0.00 0.00 3.07
167 169 1.423845 CACCACGACGCCAAATAGC 59.576 57.895 0.00 0.00 0.00 2.97
170 172 2.112297 ACCACCACGACGCCAAAT 59.888 55.556 0.00 0.00 0.00 2.32
172 174 4.164087 ACACCACCACGACGCCAA 62.164 61.111 0.00 0.00 0.00 4.52
175 177 4.634133 TCGACACCACCACGACGC 62.634 66.667 0.00 0.00 0.00 5.19
176 178 2.728383 GTCGACACCACCACGACG 60.728 66.667 11.55 0.00 44.55 5.12
178 180 1.287815 GATGTCGACACCACCACGA 59.712 57.895 22.71 0.00 0.00 4.35
179 181 1.006688 TGATGTCGACACCACCACG 60.007 57.895 22.71 0.00 0.00 4.94
180 182 0.033504 ACTGATGTCGACACCACCAC 59.966 55.000 22.71 8.80 0.00 4.16
181 183 0.756294 AACTGATGTCGACACCACCA 59.244 50.000 22.71 14.86 0.00 4.17
182 184 1.148310 CAACTGATGTCGACACCACC 58.852 55.000 22.71 10.95 0.00 4.61
183 185 2.061773 CTCAACTGATGTCGACACCAC 58.938 52.381 22.71 15.46 0.00 4.16
184 186 1.605457 GCTCAACTGATGTCGACACCA 60.605 52.381 22.71 17.82 0.00 4.17
185 187 1.071605 GCTCAACTGATGTCGACACC 58.928 55.000 22.71 12.88 0.00 4.16
186 188 1.071605 GGCTCAACTGATGTCGACAC 58.928 55.000 22.71 15.11 0.00 3.67
187 189 0.969149 AGGCTCAACTGATGTCGACA 59.031 50.000 22.48 22.48 0.00 4.35
188 190 1.634702 GAGGCTCAACTGATGTCGAC 58.365 55.000 10.25 9.11 0.00 4.20
189 191 0.171231 CGAGGCTCAACTGATGTCGA 59.829 55.000 15.95 0.00 0.00 4.20
190 192 1.416813 GCGAGGCTCAACTGATGTCG 61.417 60.000 15.95 0.00 0.00 4.35
191 193 0.390340 TGCGAGGCTCAACTGATGTC 60.390 55.000 15.95 0.00 0.00 3.06
192 194 0.035317 TTGCGAGGCTCAACTGATGT 59.965 50.000 15.95 0.00 0.00 3.06
193 195 0.725686 CTTGCGAGGCTCAACTGATG 59.274 55.000 15.95 0.00 0.00 3.07
194 196 0.392193 CCTTGCGAGGCTCAACTGAT 60.392 55.000 15.95 0.00 35.94 2.90
195 197 1.004560 CCTTGCGAGGCTCAACTGA 60.005 57.895 15.95 0.00 35.94 3.41
196 198 3.571119 CCTTGCGAGGCTCAACTG 58.429 61.111 15.95 0.00 35.94 3.16
205 207 2.363807 GACACATCGACCTTGCGAG 58.636 57.895 0.00 0.00 44.26 5.03
206 208 4.571250 GACACATCGACCTTGCGA 57.429 55.556 0.00 0.00 45.22 5.10
216 218 2.094700 TCAGAGCAAGTACCGACACATC 60.095 50.000 0.00 0.00 0.00 3.06
217 219 1.893137 TCAGAGCAAGTACCGACACAT 59.107 47.619 0.00 0.00 0.00 3.21
218 220 1.324383 TCAGAGCAAGTACCGACACA 58.676 50.000 0.00 0.00 0.00 3.72
219 221 2.030185 TCTTCAGAGCAAGTACCGACAC 60.030 50.000 0.00 0.00 0.00 3.67
220 222 2.235891 TCTTCAGAGCAAGTACCGACA 58.764 47.619 0.00 0.00 0.00 4.35
221 223 3.182967 CATCTTCAGAGCAAGTACCGAC 58.817 50.000 0.00 0.00 0.00 4.79
222 224 2.166459 CCATCTTCAGAGCAAGTACCGA 59.834 50.000 0.00 0.00 0.00 4.69
223 225 2.166459 TCCATCTTCAGAGCAAGTACCG 59.834 50.000 0.00 0.00 0.00 4.02
224 226 3.895232 TCCATCTTCAGAGCAAGTACC 57.105 47.619 0.00 0.00 0.00 3.34
225 227 4.047822 CGATCCATCTTCAGAGCAAGTAC 58.952 47.826 0.00 0.00 0.00 2.73
226 228 3.068732 CCGATCCATCTTCAGAGCAAGTA 59.931 47.826 0.00 0.00 0.00 2.24
227 229 2.158986 CCGATCCATCTTCAGAGCAAGT 60.159 50.000 0.00 0.00 0.00 3.16
228 230 2.158986 ACCGATCCATCTTCAGAGCAAG 60.159 50.000 0.00 0.00 0.00 4.01
229 231 1.833630 ACCGATCCATCTTCAGAGCAA 59.166 47.619 0.00 0.00 0.00 3.91
230 232 1.137675 CACCGATCCATCTTCAGAGCA 59.862 52.381 0.00 0.00 0.00 4.26
231 233 1.539929 CCACCGATCCATCTTCAGAGC 60.540 57.143 0.00 0.00 0.00 4.09
232 234 2.034878 TCCACCGATCCATCTTCAGAG 58.965 52.381 0.00 0.00 0.00 3.35
233 235 2.159179 TCCACCGATCCATCTTCAGA 57.841 50.000 0.00 0.00 0.00 3.27
234 236 2.432146 TCTTCCACCGATCCATCTTCAG 59.568 50.000 0.00 0.00 0.00 3.02
235 237 2.168521 GTCTTCCACCGATCCATCTTCA 59.831 50.000 0.00 0.00 0.00 3.02
236 238 2.168521 TGTCTTCCACCGATCCATCTTC 59.831 50.000 0.00 0.00 0.00 2.87
237 239 2.169352 CTGTCTTCCACCGATCCATCTT 59.831 50.000 0.00 0.00 0.00 2.40
238 240 1.759445 CTGTCTTCCACCGATCCATCT 59.241 52.381 0.00 0.00 0.00 2.90
239 241 1.482593 ACTGTCTTCCACCGATCCATC 59.517 52.381 0.00 0.00 0.00 3.51
240 242 1.208052 CACTGTCTTCCACCGATCCAT 59.792 52.381 0.00 0.00 0.00 3.41
241 243 0.608130 CACTGTCTTCCACCGATCCA 59.392 55.000 0.00 0.00 0.00 3.41
242 244 0.108138 CCACTGTCTTCCACCGATCC 60.108 60.000 0.00 0.00 0.00 3.36
243 245 0.741221 GCCACTGTCTTCCACCGATC 60.741 60.000 0.00 0.00 0.00 3.69
244 246 1.296715 GCCACTGTCTTCCACCGAT 59.703 57.895 0.00 0.00 0.00 4.18
245 247 2.741092 GCCACTGTCTTCCACCGA 59.259 61.111 0.00 0.00 0.00 4.69
246 248 2.738521 CGCCACTGTCTTCCACCG 60.739 66.667 0.00 0.00 0.00 4.94
247 249 2.358737 CCGCCACTGTCTTCCACC 60.359 66.667 0.00 0.00 0.00 4.61
248 250 3.050275 GCCGCCACTGTCTTCCAC 61.050 66.667 0.00 0.00 0.00 4.02
249 251 4.680237 CGCCGCCACTGTCTTCCA 62.680 66.667 0.00 0.00 0.00 3.53
251 253 4.681978 ACCGCCGCCACTGTCTTC 62.682 66.667 0.00 0.00 0.00 2.87
252 254 4.681978 GACCGCCGCCACTGTCTT 62.682 66.667 0.00 0.00 0.00 3.01
254 256 4.681978 AAGACCGCCGCCACTGTC 62.682 66.667 0.00 0.00 0.00 3.51
255 257 4.250305 AAAGACCGCCGCCACTGT 62.250 61.111 0.00 0.00 0.00 3.55
256 258 3.726517 CAAAGACCGCCGCCACTG 61.727 66.667 0.00 0.00 0.00 3.66
263 265 4.389576 CACGCTGCAAAGACCGCC 62.390 66.667 0.00 0.00 0.00 6.13
265 267 4.724697 CGCACGCTGCAAAGACCG 62.725 66.667 0.00 0.00 45.36 4.79
287 289 0.813610 CGCACTTTCAGTGGTCACCA 60.814 55.000 0.00 0.00 46.01 4.17
288 290 1.941812 CGCACTTTCAGTGGTCACC 59.058 57.895 6.05 0.00 46.01 4.02
289 291 1.279840 GCGCACTTTCAGTGGTCAC 59.720 57.895 0.30 0.00 46.01 3.67
290 292 1.891919 GGCGCACTTTCAGTGGTCA 60.892 57.895 10.83 0.00 46.01 4.02
291 293 2.946762 GGCGCACTTTCAGTGGTC 59.053 61.111 10.83 0.00 46.01 4.02
292 294 2.972505 CGGCGCACTTTCAGTGGT 60.973 61.111 10.83 0.00 46.01 4.16
293 295 3.726517 CCGGCGCACTTTCAGTGG 61.727 66.667 10.83 0.00 46.01 4.00
295 297 2.665185 GTCCGGCGCACTTTCAGT 60.665 61.111 10.83 0.00 0.00 3.41
296 298 3.423154 GGTCCGGCGCACTTTCAG 61.423 66.667 10.83 0.00 0.00 3.02
297 299 4.243008 TGGTCCGGCGCACTTTCA 62.243 61.111 10.83 0.00 0.00 2.69
298 300 3.423154 CTGGTCCGGCGCACTTTC 61.423 66.667 10.83 0.00 0.00 2.62
299 301 4.250305 ACTGGTCCGGCGCACTTT 62.250 61.111 10.83 0.00 0.00 2.66
300 302 4.988598 CACTGGTCCGGCGCACTT 62.989 66.667 10.83 0.00 0.00 3.16
307 309 3.883744 GAGGCACACACTGGTCCGG 62.884 68.421 0.00 0.00 0.00 5.14
308 310 2.357517 GAGGCACACACTGGTCCG 60.358 66.667 0.00 0.00 0.00 4.79
309 311 2.357517 CGAGGCACACACTGGTCC 60.358 66.667 0.00 0.00 0.00 4.46
310 312 2.357517 CCGAGGCACACACTGGTC 60.358 66.667 0.00 0.00 0.00 4.02
311 313 2.842462 TCCGAGGCACACACTGGT 60.842 61.111 0.00 0.00 0.00 4.00
312 314 2.357517 GTCCGAGGCACACACTGG 60.358 66.667 0.00 0.00 0.00 4.00
313 315 2.357517 GGTCCGAGGCACACACTG 60.358 66.667 0.00 0.00 0.00 3.66
314 316 3.626924 GGGTCCGAGGCACACACT 61.627 66.667 0.00 0.00 0.00 3.55
331 333 4.054825 AACCAAGCCGCATTGCCG 62.055 61.111 2.41 0.00 0.00 5.69
332 334 2.432972 CAACCAAGCCGCATTGCC 60.433 61.111 2.41 0.00 0.00 4.52
333 335 2.432972 CCAACCAAGCCGCATTGC 60.433 61.111 0.00 0.00 0.00 3.56
334 336 2.262292 CCCAACCAAGCCGCATTG 59.738 61.111 0.00 0.00 0.00 2.82
335 337 2.996734 CCCCAACCAAGCCGCATT 60.997 61.111 0.00 0.00 0.00 3.56
341 343 2.677875 CAGAGGCCCCAACCAAGC 60.678 66.667 0.00 0.00 0.00 4.01
342 344 2.036256 CCAGAGGCCCCAACCAAG 59.964 66.667 0.00 0.00 0.00 3.61
343 345 4.299796 GCCAGAGGCCCCAACCAA 62.300 66.667 0.00 0.00 44.06 3.67
353 355 4.712476 AGCATAACATCTAAAGCCAGAGG 58.288 43.478 0.00 0.00 32.66 3.69
354 356 6.459298 CCAAAGCATAACATCTAAAGCCAGAG 60.459 42.308 0.00 0.00 0.00 3.35
355 357 5.357878 CCAAAGCATAACATCTAAAGCCAGA 59.642 40.000 0.00 0.00 0.00 3.86
356 358 5.126061 ACCAAAGCATAACATCTAAAGCCAG 59.874 40.000 0.00 0.00 0.00 4.85
357 359 5.016173 ACCAAAGCATAACATCTAAAGCCA 58.984 37.500 0.00 0.00 0.00 4.75
358 360 5.105756 ACACCAAAGCATAACATCTAAAGCC 60.106 40.000 0.00 0.00 0.00 4.35
359 361 5.801947 CACACCAAAGCATAACATCTAAAGC 59.198 40.000 0.00 0.00 0.00 3.51
360 362 7.144722 TCACACCAAAGCATAACATCTAAAG 57.855 36.000 0.00 0.00 0.00 1.85
361 363 6.150976 CCTCACACCAAAGCATAACATCTAAA 59.849 38.462 0.00 0.00 0.00 1.85
362 364 5.647658 CCTCACACCAAAGCATAACATCTAA 59.352 40.000 0.00 0.00 0.00 2.10
363 365 5.185454 CCTCACACCAAAGCATAACATCTA 58.815 41.667 0.00 0.00 0.00 1.98
364 366 4.012374 CCTCACACCAAAGCATAACATCT 58.988 43.478 0.00 0.00 0.00 2.90
365 367 3.758554 ACCTCACACCAAAGCATAACATC 59.241 43.478 0.00 0.00 0.00 3.06
366 368 3.766545 ACCTCACACCAAAGCATAACAT 58.233 40.909 0.00 0.00 0.00 2.71
367 369 3.222173 ACCTCACACCAAAGCATAACA 57.778 42.857 0.00 0.00 0.00 2.41
368 370 4.298332 CAAACCTCACACCAAAGCATAAC 58.702 43.478 0.00 0.00 0.00 1.89
369 371 3.320541 CCAAACCTCACACCAAAGCATAA 59.679 43.478 0.00 0.00 0.00 1.90
370 372 2.890311 CCAAACCTCACACCAAAGCATA 59.110 45.455 0.00 0.00 0.00 3.14
371 373 1.688197 CCAAACCTCACACCAAAGCAT 59.312 47.619 0.00 0.00 0.00 3.79
372 374 1.110442 CCAAACCTCACACCAAAGCA 58.890 50.000 0.00 0.00 0.00 3.91
373 375 0.389025 CCCAAACCTCACACCAAAGC 59.611 55.000 0.00 0.00 0.00 3.51
374 376 1.775385 ACCCAAACCTCACACCAAAG 58.225 50.000 0.00 0.00 0.00 2.77
375 377 3.603965 ATACCCAAACCTCACACCAAA 57.396 42.857 0.00 0.00 0.00 3.28
376 378 3.226777 CAATACCCAAACCTCACACCAA 58.773 45.455 0.00 0.00 0.00 3.67
377 379 2.870175 CAATACCCAAACCTCACACCA 58.130 47.619 0.00 0.00 0.00 4.17
378 380 1.544246 GCAATACCCAAACCTCACACC 59.456 52.381 0.00 0.00 0.00 4.16
379 381 1.199097 CGCAATACCCAAACCTCACAC 59.801 52.381 0.00 0.00 0.00 3.82
380 382 1.529226 CGCAATACCCAAACCTCACA 58.471 50.000 0.00 0.00 0.00 3.58
381 383 0.808755 CCGCAATACCCAAACCTCAC 59.191 55.000 0.00 0.00 0.00 3.51
382 384 0.963355 GCCGCAATACCCAAACCTCA 60.963 55.000 0.00 0.00 0.00 3.86
383 385 0.679960 AGCCGCAATACCCAAACCTC 60.680 55.000 0.00 0.00 0.00 3.85
384 386 0.679960 GAGCCGCAATACCCAAACCT 60.680 55.000 0.00 0.00 0.00 3.50
385 387 0.963355 TGAGCCGCAATACCCAAACC 60.963 55.000 0.00 0.00 0.00 3.27
386 388 0.451783 CTGAGCCGCAATACCCAAAC 59.548 55.000 0.00 0.00 0.00 2.93
387 389 0.326595 TCTGAGCCGCAATACCCAAA 59.673 50.000 0.00 0.00 0.00 3.28
388 390 0.546122 ATCTGAGCCGCAATACCCAA 59.454 50.000 0.00 0.00 0.00 4.12
389 391 1.419381 TATCTGAGCCGCAATACCCA 58.581 50.000 0.00 0.00 0.00 4.51
390 392 2.543777 TTATCTGAGCCGCAATACCC 57.456 50.000 0.00 0.00 0.00 3.69
391 393 3.931578 AGATTATCTGAGCCGCAATACC 58.068 45.455 0.00 0.00 0.00 2.73
403 405 4.041321 TGATGAAGGGAGGCAGATTATCTG 59.959 45.833 17.16 17.16 46.90 2.90
404 406 4.237843 TGATGAAGGGAGGCAGATTATCT 58.762 43.478 0.00 0.00 0.00 1.98
405 407 4.630644 TGATGAAGGGAGGCAGATTATC 57.369 45.455 0.00 0.00 0.00 1.75
406 408 4.414846 ACTTGATGAAGGGAGGCAGATTAT 59.585 41.667 0.00 0.00 32.95 1.28
407 409 3.782523 ACTTGATGAAGGGAGGCAGATTA 59.217 43.478 0.00 0.00 32.95 1.75
408 410 2.579860 ACTTGATGAAGGGAGGCAGATT 59.420 45.455 0.00 0.00 32.95 2.40
409 411 2.203584 ACTTGATGAAGGGAGGCAGAT 58.796 47.619 0.00 0.00 32.95 2.90
410 412 1.661463 ACTTGATGAAGGGAGGCAGA 58.339 50.000 0.00 0.00 32.95 4.26
411 413 2.089980 CAACTTGATGAAGGGAGGCAG 58.910 52.381 0.00 0.00 32.95 4.85
412 414 1.704628 TCAACTTGATGAAGGGAGGCA 59.295 47.619 0.00 0.00 32.95 4.75
413 415 2.496899 TCAACTTGATGAAGGGAGGC 57.503 50.000 0.00 0.00 32.95 4.70
414 416 5.620738 TCTATCAACTTGATGAAGGGAGG 57.379 43.478 13.66 0.00 37.70 4.30
415 417 9.270640 CTATTTCTATCAACTTGATGAAGGGAG 57.729 37.037 13.66 3.20 37.70 4.30
416 418 7.716998 GCTATTTCTATCAACTTGATGAAGGGA 59.283 37.037 13.66 0.00 37.70 4.20
417 419 7.307632 CGCTATTTCTATCAACTTGATGAAGGG 60.308 40.741 13.66 8.38 37.70 3.95
418 420 7.439356 TCGCTATTTCTATCAACTTGATGAAGG 59.561 37.037 13.66 9.85 37.70 3.46
419 421 8.272176 GTCGCTATTTCTATCAACTTGATGAAG 58.728 37.037 13.66 5.13 37.70 3.02
420 422 7.763985 TGTCGCTATTTCTATCAACTTGATGAA 59.236 33.333 13.66 11.66 37.70 2.57
421 423 7.264947 TGTCGCTATTTCTATCAACTTGATGA 58.735 34.615 13.66 7.05 37.70 2.92
422 424 7.436376 TCTGTCGCTATTTCTATCAACTTGATG 59.564 37.037 13.66 5.08 37.70 3.07
423 425 7.492524 TCTGTCGCTATTTCTATCAACTTGAT 58.507 34.615 9.26 9.26 40.72 2.57
424 426 6.863275 TCTGTCGCTATTTCTATCAACTTGA 58.137 36.000 0.00 0.00 0.00 3.02
425 427 7.223582 ACATCTGTCGCTATTTCTATCAACTTG 59.776 37.037 0.00 0.00 0.00 3.16
426 428 7.268586 ACATCTGTCGCTATTTCTATCAACTT 58.731 34.615 0.00 0.00 0.00 2.66
427 429 6.810911 ACATCTGTCGCTATTTCTATCAACT 58.189 36.000 0.00 0.00 0.00 3.16
428 430 7.470289 AACATCTGTCGCTATTTCTATCAAC 57.530 36.000 0.00 0.00 0.00 3.18
429 431 8.414003 AGTAACATCTGTCGCTATTTCTATCAA 58.586 33.333 0.00 0.00 0.00 2.57
430 432 7.862873 CAGTAACATCTGTCGCTATTTCTATCA 59.137 37.037 0.00 0.00 0.00 2.15
431 433 8.076781 TCAGTAACATCTGTCGCTATTTCTATC 58.923 37.037 0.00 0.00 36.85 2.08
432 434 7.941919 TCAGTAACATCTGTCGCTATTTCTAT 58.058 34.615 0.00 0.00 36.85 1.98
433 435 7.282450 TCTCAGTAACATCTGTCGCTATTTCTA 59.718 37.037 0.00 0.00 36.85 2.10
434 436 6.095580 TCTCAGTAACATCTGTCGCTATTTCT 59.904 38.462 0.00 0.00 36.85 2.52
435 437 6.266323 TCTCAGTAACATCTGTCGCTATTTC 58.734 40.000 0.00 0.00 36.85 2.17
436 438 6.208988 TCTCAGTAACATCTGTCGCTATTT 57.791 37.500 0.00 0.00 36.85 1.40
437 439 5.836821 TCTCAGTAACATCTGTCGCTATT 57.163 39.130 0.00 0.00 36.85 1.73
438 440 5.278709 CCATCTCAGTAACATCTGTCGCTAT 60.279 44.000 0.00 0.00 36.85 2.97
439 441 4.036852 CCATCTCAGTAACATCTGTCGCTA 59.963 45.833 0.00 0.00 36.85 4.26
440 442 3.181482 CCATCTCAGTAACATCTGTCGCT 60.181 47.826 0.00 0.00 36.85 4.93
441 443 3.119291 CCATCTCAGTAACATCTGTCGC 58.881 50.000 0.00 0.00 36.85 5.19
442 444 4.108336 CACCATCTCAGTAACATCTGTCG 58.892 47.826 0.00 0.00 36.85 4.35
443 445 4.437239 CCACCATCTCAGTAACATCTGTC 58.563 47.826 0.00 0.00 36.85 3.51
444 446 3.369892 GCCACCATCTCAGTAACATCTGT 60.370 47.826 0.00 0.00 36.85 3.41
445 447 3.118482 AGCCACCATCTCAGTAACATCTG 60.118 47.826 0.00 0.00 36.85 2.90
446 448 3.110705 AGCCACCATCTCAGTAACATCT 58.889 45.455 0.00 0.00 0.00 2.90
447 449 3.550437 AGCCACCATCTCAGTAACATC 57.450 47.619 0.00 0.00 0.00 3.06
448 450 3.264193 TGAAGCCACCATCTCAGTAACAT 59.736 43.478 0.00 0.00 0.00 2.71
449 451 2.637382 TGAAGCCACCATCTCAGTAACA 59.363 45.455 0.00 0.00 0.00 2.41
450 452 3.055819 TCTGAAGCCACCATCTCAGTAAC 60.056 47.826 0.00 0.00 0.00 2.50
451 453 3.055819 GTCTGAAGCCACCATCTCAGTAA 60.056 47.826 0.00 0.00 0.00 2.24
452 454 2.497675 GTCTGAAGCCACCATCTCAGTA 59.502 50.000 0.00 0.00 0.00 2.74
453 455 1.277557 GTCTGAAGCCACCATCTCAGT 59.722 52.381 0.00 0.00 0.00 3.41
454 456 1.554160 AGTCTGAAGCCACCATCTCAG 59.446 52.381 0.00 0.00 0.00 3.35
455 457 1.649321 AGTCTGAAGCCACCATCTCA 58.351 50.000 0.00 0.00 0.00 3.27
456 458 2.777832 AAGTCTGAAGCCACCATCTC 57.222 50.000 0.00 0.00 0.00 2.75
457 459 4.851639 AATAAGTCTGAAGCCACCATCT 57.148 40.909 0.00 0.00 0.00 2.90
458 460 6.543831 ACATTAATAAGTCTGAAGCCACCATC 59.456 38.462 0.00 0.00 0.00 3.51
459 461 6.426587 ACATTAATAAGTCTGAAGCCACCAT 58.573 36.000 0.00 0.00 0.00 3.55
460 462 5.815581 ACATTAATAAGTCTGAAGCCACCA 58.184 37.500 0.00 0.00 0.00 4.17
461 463 8.451908 AATACATTAATAAGTCTGAAGCCACC 57.548 34.615 0.00 0.00 0.00 4.61
487 489 8.816894 TGTTCTTATATTTGAGACAGAGGAAGT 58.183 33.333 0.00 0.00 0.00 3.01
488 490 9.829507 ATGTTCTTATATTTGAGACAGAGGAAG 57.170 33.333 0.00 0.00 0.00 3.46
538 540 9.751542 CCTCTGTCTCATAATATAAGAACGTTT 57.248 33.333 0.46 0.00 0.00 3.60
539 541 8.361139 CCCTCTGTCTCATAATATAAGAACGTT 58.639 37.037 0.00 0.00 0.00 3.99
540 542 7.724506 TCCCTCTGTCTCATAATATAAGAACGT 59.275 37.037 0.00 0.00 0.00 3.99
541 543 8.112016 TCCCTCTGTCTCATAATATAAGAACG 57.888 38.462 0.00 0.00 0.00 3.95
542 544 9.084533 ACTCCCTCTGTCTCATAATATAAGAAC 57.915 37.037 0.00 0.00 0.00 3.01
544 546 9.742144 GTACTCCCTCTGTCTCATAATATAAGA 57.258 37.037 0.00 0.00 0.00 2.10
545 547 9.747898 AGTACTCCCTCTGTCTCATAATATAAG 57.252 37.037 0.00 0.00 0.00 1.73
548 550 9.440761 AAAAGTACTCCCTCTGTCTCATAATAT 57.559 33.333 0.00 0.00 0.00 1.28
549 551 8.840200 AAAAGTACTCCCTCTGTCTCATAATA 57.160 34.615 0.00 0.00 0.00 0.98
550 552 7.741554 AAAAGTACTCCCTCTGTCTCATAAT 57.258 36.000 0.00 0.00 0.00 1.28
551 553 7.554959 AAAAAGTACTCCCTCTGTCTCATAA 57.445 36.000 0.00 0.00 0.00 1.90
552 554 8.660295 TTAAAAAGTACTCCCTCTGTCTCATA 57.340 34.615 0.00 0.00 0.00 2.15
553 555 7.455008 TCTTAAAAAGTACTCCCTCTGTCTCAT 59.545 37.037 0.00 0.00 0.00 2.90
554 556 6.781014 TCTTAAAAAGTACTCCCTCTGTCTCA 59.219 38.462 0.00 0.00 0.00 3.27
555 557 7.229581 TCTTAAAAAGTACTCCCTCTGTCTC 57.770 40.000 0.00 0.00 0.00 3.36
556 558 7.676468 AGATCTTAAAAAGTACTCCCTCTGTCT 59.324 37.037 0.00 0.00 0.00 3.41
557 559 7.842982 AGATCTTAAAAAGTACTCCCTCTGTC 58.157 38.462 0.00 0.00 0.00 3.51
558 560 7.800300 AGATCTTAAAAAGTACTCCCTCTGT 57.200 36.000 0.00 0.00 0.00 3.41
559 561 8.314751 TCAAGATCTTAAAAAGTACTCCCTCTG 58.685 37.037 7.86 0.00 0.00 3.35
560 562 8.437274 TCAAGATCTTAAAAAGTACTCCCTCT 57.563 34.615 7.86 0.00 0.00 3.69
561 563 9.103861 CATCAAGATCTTAAAAAGTACTCCCTC 57.896 37.037 7.86 0.00 0.00 4.30
562 564 8.826765 TCATCAAGATCTTAAAAAGTACTCCCT 58.173 33.333 7.86 0.00 0.00 4.20
563 565 9.449719 TTCATCAAGATCTTAAAAAGTACTCCC 57.550 33.333 7.86 0.00 0.00 4.30
591 593 9.357652 GCGATGTATGCATCCATTTTATTAATT 57.642 29.630 16.92 0.00 46.56 1.40
592 594 7.975616 GGCGATGTATGCATCCATTTTATTAAT 59.024 33.333 16.92 0.00 46.56 1.40
593 595 7.040132 TGGCGATGTATGCATCCATTTTATTAA 60.040 33.333 16.92 0.00 46.56 1.40
594 596 6.432472 TGGCGATGTATGCATCCATTTTATTA 59.568 34.615 16.92 0.00 46.56 0.98
595 597 5.243507 TGGCGATGTATGCATCCATTTTATT 59.756 36.000 16.92 0.00 46.56 1.40
596 598 4.766373 TGGCGATGTATGCATCCATTTTAT 59.234 37.500 16.92 0.00 46.56 1.40
597 599 4.140536 TGGCGATGTATGCATCCATTTTA 58.859 39.130 16.92 0.00 46.56 1.52
598 600 2.957680 TGGCGATGTATGCATCCATTTT 59.042 40.909 16.92 0.00 46.56 1.82
599 601 2.585330 TGGCGATGTATGCATCCATTT 58.415 42.857 16.92 0.00 46.56 2.32
600 602 2.275134 TGGCGATGTATGCATCCATT 57.725 45.000 16.92 0.00 46.56 3.16
601 603 2.089201 CATGGCGATGTATGCATCCAT 58.911 47.619 16.92 13.32 46.56 3.41
602 604 1.072015 TCATGGCGATGTATGCATCCA 59.928 47.619 16.92 11.68 46.56 3.41
603 605 1.812235 TCATGGCGATGTATGCATCC 58.188 50.000 16.92 10.15 46.56 3.51
604 606 3.400505 CATCATGGCGATGTATGCATC 57.599 47.619 13.30 13.30 45.61 3.91
613 615 1.202842 TCTGCATTCCATCATGGCGAT 60.203 47.619 0.00 0.00 37.47 4.58
614 616 0.180878 TCTGCATTCCATCATGGCGA 59.819 50.000 0.00 0.00 37.47 5.54
615 617 0.591659 CTCTGCATTCCATCATGGCG 59.408 55.000 0.00 0.00 37.47 5.69
616 618 0.959553 CCTCTGCATTCCATCATGGC 59.040 55.000 0.00 0.00 37.47 4.40
617 619 0.959553 GCCTCTGCATTCCATCATGG 59.040 55.000 0.00 0.00 36.70 3.66
618 620 0.959553 GGCCTCTGCATTCCATCATG 59.040 55.000 0.00 0.00 40.13 3.07
619 621 0.536687 CGGCCTCTGCATTCCATCAT 60.537 55.000 0.00 0.00 40.13 2.45
620 622 1.153107 CGGCCTCTGCATTCCATCA 60.153 57.895 0.00 0.00 40.13 3.07
621 623 0.883814 CTCGGCCTCTGCATTCCATC 60.884 60.000 0.00 0.00 40.13 3.51
622 624 1.147824 CTCGGCCTCTGCATTCCAT 59.852 57.895 0.00 0.00 40.13 3.41
623 625 2.586245 CTCGGCCTCTGCATTCCA 59.414 61.111 0.00 0.00 40.13 3.53
624 626 2.203126 CCTCGGCCTCTGCATTCC 60.203 66.667 0.00 0.00 40.13 3.01
625 627 1.817099 CACCTCGGCCTCTGCATTC 60.817 63.158 0.00 0.00 40.13 2.67
626 628 2.129555 AACACCTCGGCCTCTGCATT 62.130 55.000 0.00 0.00 40.13 3.56
627 629 2.596851 AACACCTCGGCCTCTGCAT 61.597 57.895 0.00 0.00 40.13 3.96
628 630 3.241530 AACACCTCGGCCTCTGCA 61.242 61.111 0.00 0.00 40.13 4.41
629 631 2.743928 CAACACCTCGGCCTCTGC 60.744 66.667 0.00 0.00 0.00 4.26
630 632 1.903877 ATCCAACACCTCGGCCTCTG 61.904 60.000 0.00 0.00 0.00 3.35
631 633 0.325296 TATCCAACACCTCGGCCTCT 60.325 55.000 0.00 0.00 0.00 3.69
632 634 0.759346 ATATCCAACACCTCGGCCTC 59.241 55.000 0.00 0.00 0.00 4.70
633 635 1.141053 GAATATCCAACACCTCGGCCT 59.859 52.381 0.00 0.00 0.00 5.19
634 636 1.594331 GAATATCCAACACCTCGGCC 58.406 55.000 0.00 0.00 0.00 6.13
635 637 1.134220 TGGAATATCCAACACCTCGGC 60.134 52.381 0.00 0.00 45.00 5.54
646 648 5.299279 ACGTGTTGGAAATCATGGAATATCC 59.701 40.000 0.00 0.00 36.96 2.59
647 649 6.201517 CACGTGTTGGAAATCATGGAATATC 58.798 40.000 7.58 0.00 0.00 1.63
648 650 6.135290 CACGTGTTGGAAATCATGGAATAT 57.865 37.500 7.58 0.00 0.00 1.28
649 651 5.559427 CACGTGTTGGAAATCATGGAATA 57.441 39.130 7.58 0.00 0.00 1.75
650 652 4.439305 CACGTGTTGGAAATCATGGAAT 57.561 40.909 7.58 0.00 0.00 3.01
651 653 3.913548 CACGTGTTGGAAATCATGGAA 57.086 42.857 7.58 0.00 0.00 3.53
662 664 0.673644 GAGGATGACCCACGTGTTGG 60.674 60.000 15.65 12.05 46.47 3.77
663 665 0.673644 GGAGGATGACCCACGTGTTG 60.674 60.000 15.65 7.81 37.41 3.33
664 666 0.836400 AGGAGGATGACCCACGTGTT 60.836 55.000 15.65 0.00 37.41 3.32
665 667 0.836400 AAGGAGGATGACCCACGTGT 60.836 55.000 15.65 0.00 37.41 4.49
666 668 0.324943 AAAGGAGGATGACCCACGTG 59.675 55.000 9.08 9.08 37.41 4.49
667 669 1.064825 AAAAGGAGGATGACCCACGT 58.935 50.000 0.00 0.00 37.41 4.49
668 670 1.812571 CAAAAAGGAGGATGACCCACG 59.187 52.381 0.00 0.00 37.41 4.94
669 671 3.154827 TCAAAAAGGAGGATGACCCAC 57.845 47.619 0.00 0.00 37.41 4.61
670 672 3.893753 TTCAAAAAGGAGGATGACCCA 57.106 42.857 0.00 0.00 37.41 4.51
671 673 5.545063 TTTTTCAAAAAGGAGGATGACCC 57.455 39.130 0.00 0.00 36.73 4.46
691 693 3.214328 ACTCACGGATTCACAGCTTTTT 58.786 40.909 0.00 0.00 0.00 1.94
692 694 2.851195 ACTCACGGATTCACAGCTTTT 58.149 42.857 0.00 0.00 0.00 2.27
693 695 2.550830 ACTCACGGATTCACAGCTTT 57.449 45.000 0.00 0.00 0.00 3.51
694 696 2.093973 CCTACTCACGGATTCACAGCTT 60.094 50.000 0.00 0.00 0.00 3.74
712 714 4.041567 TGGTCAGCACTTTGATTTCTCCTA 59.958 41.667 0.00 0.00 0.00 2.94
743 764 3.003480 CGGAACAGGAACATCCTTCTTC 58.997 50.000 0.00 1.30 46.91 2.87
750 771 1.459592 CGTGAACGGAACAGGAACATC 59.540 52.381 0.00 0.00 35.37 3.06
751 772 1.069513 TCGTGAACGGAACAGGAACAT 59.930 47.619 2.59 0.00 40.29 2.71
752 773 0.460722 TCGTGAACGGAACAGGAACA 59.539 50.000 2.59 0.00 40.29 3.18
753 774 1.137513 CTCGTGAACGGAACAGGAAC 58.862 55.000 2.59 0.00 40.29 3.62
754 775 0.748450 ACTCGTGAACGGAACAGGAA 59.252 50.000 2.59 0.00 40.29 3.36
755 776 0.031585 CACTCGTGAACGGAACAGGA 59.968 55.000 2.59 0.00 40.29 3.86
756 777 0.944311 CCACTCGTGAACGGAACAGG 60.944 60.000 2.59 0.00 40.29 4.00
774 798 3.110178 GACACGTACGGCACTGCC 61.110 66.667 21.06 10.35 46.75 4.85
798 826 1.136500 GATCCTACGTGGGTTGAGTCC 59.864 57.143 18.36 0.00 36.20 3.85
806 834 2.417516 CGGCTGATCCTACGTGGG 59.582 66.667 12.53 12.53 36.20 4.61
814 842 4.593864 GACTCGGCCGGCTGATCC 62.594 72.222 37.10 26.26 0.00 3.36
916 944 0.727122 GTACGTAGTCAAGCGTGCGT 60.727 55.000 0.00 7.93 43.93 5.24
917 945 1.400990 GGTACGTAGTCAAGCGTGCG 61.401 60.000 0.00 0.00 43.93 5.34
918 946 0.109412 AGGTACGTAGTCAAGCGTGC 60.109 55.000 0.00 0.00 43.93 5.34
919 947 2.674852 TCTAGGTACGTAGTCAAGCGTG 59.325 50.000 19.27 0.00 43.93 5.34
920 948 2.935201 CTCTAGGTACGTAGTCAAGCGT 59.065 50.000 19.27 0.00 43.93 5.07
921 949 2.935201 ACTCTAGGTACGTAGTCAAGCG 59.065 50.000 19.27 7.47 43.93 4.68
944 986 0.326927 ATCAAACACGGACGGGGAAT 59.673 50.000 0.00 0.00 0.00 3.01
945 987 0.320946 GATCAAACACGGACGGGGAA 60.321 55.000 0.00 0.00 0.00 3.97
950 992 0.179250 CAAGCGATCAAACACGGACG 60.179 55.000 0.00 0.00 0.00 4.79
957 999 4.201714 TGTCGATCAATCAAGCGATCAAAC 60.202 41.667 0.00 0.00 38.35 2.93
966 1008 2.864946 CTGGCTCTGTCGATCAATCAAG 59.135 50.000 0.00 0.00 0.00 3.02
1114 1160 0.106469 TCATCGTCCTCCAGGGAGAG 60.106 60.000 16.89 7.13 46.10 3.20
1150 1211 0.391661 TCCAAGCTGCGGATCAAGAC 60.392 55.000 0.00 0.00 0.00 3.01
1188 1249 3.647649 CTGGTGCGCCACGATGAGA 62.648 63.158 16.89 0.00 40.46 3.27
1235 1296 3.132289 GGACCTGTAGATGTCGATTTCCA 59.868 47.826 0.00 0.00 32.19 3.53
1312 1385 2.330372 CCTCCTTGACGTCGTCCGA 61.330 63.158 22.05 13.43 40.70 4.55
1314 1387 1.507174 CTCCTCCTTGACGTCGTCC 59.493 63.158 22.05 5.49 0.00 4.79
1315 1388 0.959372 TCCTCCTCCTTGACGTCGTC 60.959 60.000 18.51 18.51 0.00 4.20
1316 1389 0.961358 CTCCTCCTCCTTGACGTCGT 60.961 60.000 11.62 0.00 0.00 4.34
1317 1390 1.658686 CCTCCTCCTCCTTGACGTCG 61.659 65.000 11.62 0.00 0.00 5.12
1320 1393 0.749649 CATCCTCCTCCTCCTTGACG 59.250 60.000 0.00 0.00 0.00 4.35
1321 1394 2.038659 CTCATCCTCCTCCTCCTTGAC 58.961 57.143 0.00 0.00 0.00 3.18
1322 1395 1.062581 CCTCATCCTCCTCCTCCTTGA 60.063 57.143 0.00 0.00 0.00 3.02
1323 1396 1.062581 TCCTCATCCTCCTCCTCCTTG 60.063 57.143 0.00 0.00 0.00 3.61
1324 1397 1.062505 GTCCTCATCCTCCTCCTCCTT 60.063 57.143 0.00 0.00 0.00 3.36
1327 1400 0.183971 TCGTCCTCATCCTCCTCCTC 59.816 60.000 0.00 0.00 0.00 3.71
1328 1401 0.106419 GTCGTCCTCATCCTCCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
1333 1406 1.001158 GAATCCGTCGTCCTCATCCTC 60.001 57.143 0.00 0.00 0.00 3.71
1334 1407 1.033574 GAATCCGTCGTCCTCATCCT 58.966 55.000 0.00 0.00 0.00 3.24
1335 1408 0.317938 CGAATCCGTCGTCCTCATCC 60.318 60.000 0.00 0.00 45.09 3.51
1351 1535 2.125147 CTCCTTGGCATCGGCGAA 60.125 61.111 15.93 0.00 42.47 4.70
1426 1676 4.803426 CAGCGCGGTGGTCTCCTC 62.803 72.222 29.65 0.00 0.00 3.71
1428 1678 4.803426 CTCAGCGCGGTGGTCTCC 62.803 72.222 34.92 2.93 0.00 3.71
1429 1679 4.803426 CCTCAGCGCGGTGGTCTC 62.803 72.222 34.92 3.76 0.00 3.36
1440 1690 1.446966 GTCTCCGAACTGCCTCAGC 60.447 63.158 0.00 0.00 34.37 4.26
1447 1697 1.269166 GCGTACATGTCTCCGAACTG 58.731 55.000 0.00 0.00 0.00 3.16
1453 1703 0.727398 GCTTTGGCGTACATGTCTCC 59.273 55.000 0.00 2.58 0.00 3.71
1475 1725 2.632544 AAGCGACGGTCCACATCGA 61.633 57.895 0.00 0.00 38.10 3.59
1724 2037 9.722184 CCCCATATGCATAGATTAGATTAGATG 57.278 37.037 12.79 1.70 0.00 2.90
1725 2038 9.457776 ACCCCATATGCATAGATTAGATTAGAT 57.542 33.333 12.79 0.00 0.00 1.98
1726 2039 8.860517 ACCCCATATGCATAGATTAGATTAGA 57.139 34.615 12.79 0.00 0.00 2.10
1727 2040 9.334947 CAACCCCATATGCATAGATTAGATTAG 57.665 37.037 12.79 0.00 0.00 1.73
1728 2041 8.835734 ACAACCCCATATGCATAGATTAGATTA 58.164 33.333 12.79 0.00 0.00 1.75
1729 2042 7.613022 CACAACCCCATATGCATAGATTAGATT 59.387 37.037 12.79 0.00 0.00 2.40
1766 2084 8.935844 CATTAGTACAATTCTGCTTGTGACTTA 58.064 33.333 0.00 0.00 39.60 2.24
1805 2123 6.153680 TGCTACTTTTCTCCTTGTTGGAAAAA 59.846 34.615 0.00 0.00 45.63 1.94
1819 2137 5.765182 ACAATTACAGTGCTGCTACTTTTCT 59.235 36.000 0.00 0.00 0.00 2.52
1861 2179 5.698089 TGTTGAAAGAAGAGTAGTGCTGATG 59.302 40.000 0.00 0.00 0.00 3.07
1906 2233 4.393155 TTGCGCGCCTGGAGATGT 62.393 61.111 30.77 0.00 0.00 3.06
1999 2330 0.998727 GCGCGCTATATTTTGCAGCC 60.999 55.000 26.67 0.00 31.43 4.85
2060 2397 5.100259 CCGAATGTGTATCAAGTCGTAGTT 58.900 41.667 0.00 0.00 36.54 2.24
2070 2407 1.107945 TCGGAGCCGAATGTGTATCA 58.892 50.000 9.50 0.00 46.01 2.15
2316 2813 1.585006 GACTCCAAAGACGAGCGGA 59.415 57.895 0.00 0.00 0.00 5.54
2345 2842 3.357203 TCAACATCGAGCTAGGAGAAGT 58.643 45.455 0.00 0.00 0.00 3.01
2432 2931 1.664321 TTCTTCGCGTAGAGGAGGGC 61.664 60.000 15.17 0.00 36.29 5.19
2442 2959 0.454620 CGAGTAGCAGTTCTTCGCGT 60.455 55.000 5.77 0.00 32.55 6.01
2627 3161 2.569404 GGAGAGACATGAACTTCCCTGT 59.431 50.000 0.00 0.00 0.00 4.00
2629 3163 1.827969 CGGAGAGACATGAACTTCCCT 59.172 52.381 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.