Multiple sequence alignment - TraesCS5B01G497800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G497800 chr5B 100.000 4379 0 0 1 4379 664686054 664681676 0.000000e+00 8087.0
1 TraesCS5B01G497800 chr5B 88.448 580 57 6 2506 3080 664948979 664949553 0.000000e+00 691.0
2 TraesCS5B01G497800 chr5B 92.135 89 5 2 136 222 325965792 325965704 1.650000e-24 124.0
3 TraesCS5B01G497800 chr5B 91.111 90 6 2 136 223 402737539 402737628 2.140000e-23 121.0
4 TraesCS5B01G497800 chr5A 91.922 3714 203 40 721 4379 655464160 655460489 0.000000e+00 5107.0
5 TraesCS5B01G497800 chr5A 85.274 2010 259 26 1091 3082 655990132 655992122 0.000000e+00 2037.0
6 TraesCS5B01G497800 chr5A 76.570 589 126 10 2149 2728 597687191 597686606 3.290000e-81 313.0
7 TraesCS5B01G497800 chr5A 87.435 191 18 3 495 681 655464425 655464237 9.540000e-52 215.0
8 TraesCS5B01G497800 chr5D 92.572 2881 147 46 534 3367 527907704 527904844 0.000000e+00 4072.0
9 TraesCS5B01G497800 chr5D 85.116 2076 257 30 1027 3082 528141982 528144025 0.000000e+00 2074.0
10 TraesCS5B01G497800 chr5D 92.664 259 13 4 3354 3612 527903890 527903638 6.920000e-98 368.0
11 TraesCS5B01G497800 chr5D 91.954 87 6 1 137 222 366007824 366007910 2.140000e-23 121.0
12 TraesCS5B01G497800 chrUn 97.711 1223 28 0 1811 3033 263457706 263458928 0.000000e+00 2104.0
13 TraesCS5B01G497800 chrUn 94.828 580 23 5 3351 3930 263460638 263461210 0.000000e+00 898.0
14 TraesCS5B01G497800 chrUn 89.852 473 22 4 3931 4379 263461245 263461715 6.310000e-163 584.0
15 TraesCS5B01G497800 chrUn 87.896 347 20 12 3035 3367 263459341 263459679 5.310000e-104 388.0
16 TraesCS5B01G497800 chrUn 87.826 115 10 3 534 644 263456489 263456603 9.880000e-27 132.0
17 TraesCS5B01G497800 chr2B 79.066 664 122 14 2083 2730 551638799 551639461 1.450000e-119 440.0
18 TraesCS5B01G497800 chr2B 87.129 101 12 1 123 222 726693241 726693341 3.580000e-21 113.0
19 TraesCS5B01G497800 chr2D 78.603 673 118 18 2083 2730 472471434 472472105 5.240000e-114 422.0
20 TraesCS5B01G497800 chr2D 94.444 90 4 1 136 224 54074113 54074024 2.120000e-28 137.0
21 TraesCS5B01G497800 chr2A 77.959 676 120 17 2083 2730 613992437 613993111 3.170000e-106 396.0
22 TraesCS5B01G497800 chr2A 77.346 309 59 10 2410 2715 189171937 189172237 5.820000e-39 172.0
23 TraesCS5B01G497800 chr1D 75.885 452 97 12 2273 2718 192567361 192567806 2.050000e-53 220.0
24 TraesCS5B01G497800 chr4B 94.118 85 4 1 139 222 631527776 631527860 1.280000e-25 128.0
25 TraesCS5B01G497800 chr4A 94.118 85 4 1 139 222 285485367 285485451 1.280000e-25 128.0
26 TraesCS5B01G497800 chr7B 93.103 87 5 1 138 223 529956384 529956298 4.600000e-25 126.0
27 TraesCS5B01G497800 chr6D 91.111 90 7 1 134 222 81224510 81224599 2.140000e-23 121.0
28 TraesCS5B01G497800 chr3B 82.222 90 14 2 1453 1541 576049609 576049697 4.700000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G497800 chr5B 664681676 664686054 4378 True 8087.0 8087 100.0000 1 4379 1 chr5B.!!$R2 4378
1 TraesCS5B01G497800 chr5B 664948979 664949553 574 False 691.0 691 88.4480 2506 3080 1 chr5B.!!$F2 574
2 TraesCS5B01G497800 chr5A 655460489 655464425 3936 True 2661.0 5107 89.6785 495 4379 2 chr5A.!!$R2 3884
3 TraesCS5B01G497800 chr5A 655990132 655992122 1990 False 2037.0 2037 85.2740 1091 3082 1 chr5A.!!$F1 1991
4 TraesCS5B01G497800 chr5A 597686606 597687191 585 True 313.0 313 76.5700 2149 2728 1 chr5A.!!$R1 579
5 TraesCS5B01G497800 chr5D 527903638 527907704 4066 True 2220.0 4072 92.6180 534 3612 2 chr5D.!!$R1 3078
6 TraesCS5B01G497800 chr5D 528141982 528144025 2043 False 2074.0 2074 85.1160 1027 3082 1 chr5D.!!$F2 2055
7 TraesCS5B01G497800 chrUn 263456489 263461715 5226 False 821.2 2104 91.6226 534 4379 5 chrUn.!!$F1 3845
8 TraesCS5B01G497800 chr2B 551638799 551639461 662 False 440.0 440 79.0660 2083 2730 1 chr2B.!!$F1 647
9 TraesCS5B01G497800 chr2D 472471434 472472105 671 False 422.0 422 78.6030 2083 2730 1 chr2D.!!$F1 647
10 TraesCS5B01G497800 chr2A 613992437 613993111 674 False 396.0 396 77.9590 2083 2730 1 chr2A.!!$F2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 380 0.032952 TGACTCGTGCTTTTAGCCGT 59.967 50.0 0.00 0.0 41.51 5.68 F
384 385 0.109781 CGTGCTTTTAGCCGTGCAAT 60.110 50.0 0.00 0.0 41.51 3.56 F
762 815 0.250858 ATGTGCAACCACTAGCAGCA 60.251 50.0 0.00 0.0 42.14 4.41 F
1030 1089 0.388649 CACTTGCTTCCGCTACTCGT 60.389 55.0 0.00 0.0 36.97 4.18 F
1669 1734 0.525668 GAGTATGACGGTGACAGCGG 60.526 60.0 28.55 12.5 44.33 5.52 F
1835 1900 1.594331 ACGTTCTTGGCTGGAGTTTC 58.406 50.0 0.00 0.0 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1193 1258 0.179056 CCTTGGTGTCGTTGGTGAGT 60.179 55.000 0.00 0.00 0.00 3.41 R
1721 1786 1.227556 GACGTGGCACCACAAGAGT 60.228 57.895 19.38 8.97 46.47 3.24 R
2258 2358 1.522355 CCGGCTCATGCTCGTGATT 60.522 57.895 0.00 0.00 39.59 2.57 R
2285 2385 4.254709 AGCTGCACCAGGTTGCGA 62.255 61.111 1.02 0.23 46.20 5.10 R
3137 3666 0.523072 ACTTGCGGCTGTATTTGCTG 59.477 50.000 0.00 0.00 39.61 4.41 R
3461 4983 1.246056 ACTGGCGTCGGCTGTAACTA 61.246 55.000 26.07 1.16 38.35 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.928908 TGAAACTTCTAAACATGCATTCAAC 57.071 32.000 0.00 0.00 0.00 3.18
25 26 7.487484 TGAAACTTCTAAACATGCATTCAACA 58.513 30.769 0.00 0.00 0.00 3.33
26 27 8.143193 TGAAACTTCTAAACATGCATTCAACAT 58.857 29.630 0.00 0.00 0.00 2.71
52 53 5.689383 TTTTTAGAACACAGTGCTCCATC 57.311 39.130 0.00 0.00 0.00 3.51
53 54 2.654749 TAGAACACAGTGCTCCATCG 57.345 50.000 0.00 0.00 0.00 3.84
54 55 0.969149 AGAACACAGTGCTCCATCGA 59.031 50.000 0.00 0.00 0.00 3.59
55 56 1.067283 AGAACACAGTGCTCCATCGAG 60.067 52.381 0.00 0.00 39.33 4.04
56 57 0.681733 AACACAGTGCTCCATCGAGT 59.318 50.000 0.00 0.00 38.49 4.18
57 58 0.244994 ACACAGTGCTCCATCGAGTC 59.755 55.000 0.00 0.00 38.49 3.36
58 59 0.459237 CACAGTGCTCCATCGAGTCC 60.459 60.000 0.00 0.00 38.49 3.85
59 60 0.900182 ACAGTGCTCCATCGAGTCCA 60.900 55.000 0.00 0.00 38.49 4.02
60 61 0.247460 CAGTGCTCCATCGAGTCCAA 59.753 55.000 0.00 0.00 38.49 3.53
61 62 0.534412 AGTGCTCCATCGAGTCCAAG 59.466 55.000 0.00 0.00 38.49 3.61
62 63 0.532573 GTGCTCCATCGAGTCCAAGA 59.467 55.000 0.00 0.00 38.49 3.02
63 64 0.820226 TGCTCCATCGAGTCCAAGAG 59.180 55.000 0.00 0.00 38.49 2.85
64 65 0.529555 GCTCCATCGAGTCCAAGAGC 60.530 60.000 0.00 0.00 39.86 4.09
65 66 0.103937 CTCCATCGAGTCCAAGAGCC 59.896 60.000 0.00 0.00 0.00 4.70
66 67 0.614697 TCCATCGAGTCCAAGAGCCA 60.615 55.000 0.00 0.00 0.00 4.75
67 68 0.250234 CCATCGAGTCCAAGAGCCAA 59.750 55.000 0.00 0.00 0.00 4.52
68 69 1.649664 CATCGAGTCCAAGAGCCAAG 58.350 55.000 0.00 0.00 0.00 3.61
69 70 1.066573 CATCGAGTCCAAGAGCCAAGT 60.067 52.381 0.00 0.00 0.00 3.16
70 71 1.048601 TCGAGTCCAAGAGCCAAGTT 58.951 50.000 0.00 0.00 0.00 2.66
71 72 2.244695 TCGAGTCCAAGAGCCAAGTTA 58.755 47.619 0.00 0.00 0.00 2.24
72 73 2.832129 TCGAGTCCAAGAGCCAAGTTAT 59.168 45.455 0.00 0.00 0.00 1.89
73 74 3.260884 TCGAGTCCAAGAGCCAAGTTATT 59.739 43.478 0.00 0.00 0.00 1.40
74 75 4.464951 TCGAGTCCAAGAGCCAAGTTATTA 59.535 41.667 0.00 0.00 0.00 0.98
75 76 4.567159 CGAGTCCAAGAGCCAAGTTATTAC 59.433 45.833 0.00 0.00 0.00 1.89
76 77 4.844884 AGTCCAAGAGCCAAGTTATTACC 58.155 43.478 0.00 0.00 0.00 2.85
77 78 4.288626 AGTCCAAGAGCCAAGTTATTACCA 59.711 41.667 0.00 0.00 0.00 3.25
78 79 4.636206 GTCCAAGAGCCAAGTTATTACCAG 59.364 45.833 0.00 0.00 0.00 4.00
79 80 3.378427 CCAAGAGCCAAGTTATTACCAGC 59.622 47.826 0.00 0.00 0.00 4.85
80 81 4.265073 CAAGAGCCAAGTTATTACCAGCT 58.735 43.478 0.00 0.00 0.00 4.24
81 82 4.576330 AGAGCCAAGTTATTACCAGCTT 57.424 40.909 0.00 0.00 0.00 3.74
82 83 4.265073 AGAGCCAAGTTATTACCAGCTTG 58.735 43.478 0.00 0.00 38.33 4.01
83 84 4.019321 AGAGCCAAGTTATTACCAGCTTGA 60.019 41.667 0.00 0.00 40.30 3.02
84 85 4.860022 AGCCAAGTTATTACCAGCTTGAT 58.140 39.130 0.00 0.00 40.30 2.57
85 86 4.641989 AGCCAAGTTATTACCAGCTTGATG 59.358 41.667 0.00 0.00 40.30 3.07
86 87 4.640201 GCCAAGTTATTACCAGCTTGATGA 59.360 41.667 0.00 0.00 40.30 2.92
87 88 5.125417 GCCAAGTTATTACCAGCTTGATGAA 59.875 40.000 0.00 0.00 40.30 2.57
88 89 6.183360 GCCAAGTTATTACCAGCTTGATGAAT 60.183 38.462 0.00 0.00 40.30 2.57
89 90 7.198390 CCAAGTTATTACCAGCTTGATGAATG 58.802 38.462 0.00 0.00 40.30 2.67
90 91 6.382869 AGTTATTACCAGCTTGATGAATGC 57.617 37.500 0.00 0.00 0.00 3.56
91 92 6.125029 AGTTATTACCAGCTTGATGAATGCT 58.875 36.000 0.00 0.00 37.56 3.79
92 93 7.282585 AGTTATTACCAGCTTGATGAATGCTA 58.717 34.615 0.00 0.00 35.05 3.49
93 94 7.941238 AGTTATTACCAGCTTGATGAATGCTAT 59.059 33.333 0.00 0.00 35.05 2.97
94 95 6.570672 ATTACCAGCTTGATGAATGCTATG 57.429 37.500 0.00 0.00 35.05 2.23
95 96 4.160642 ACCAGCTTGATGAATGCTATGA 57.839 40.909 0.00 0.00 35.05 2.15
96 97 4.529897 ACCAGCTTGATGAATGCTATGAA 58.470 39.130 0.00 0.00 35.05 2.57
97 98 4.951715 ACCAGCTTGATGAATGCTATGAAA 59.048 37.500 0.00 0.00 35.05 2.69
98 99 5.419788 ACCAGCTTGATGAATGCTATGAAAA 59.580 36.000 0.00 0.00 35.05 2.29
99 100 6.097839 ACCAGCTTGATGAATGCTATGAAAAT 59.902 34.615 0.00 0.00 35.05 1.82
100 101 7.286087 ACCAGCTTGATGAATGCTATGAAAATA 59.714 33.333 0.00 0.00 35.05 1.40
101 102 7.594015 CCAGCTTGATGAATGCTATGAAAATAC 59.406 37.037 0.00 0.00 35.05 1.89
102 103 7.594015 CAGCTTGATGAATGCTATGAAAATACC 59.406 37.037 0.00 0.00 35.05 2.73
103 104 6.580041 GCTTGATGAATGCTATGAAAATACCG 59.420 38.462 0.00 0.00 0.00 4.02
104 105 6.558771 TGATGAATGCTATGAAAATACCGG 57.441 37.500 0.00 0.00 0.00 5.28
105 106 6.061441 TGATGAATGCTATGAAAATACCGGT 58.939 36.000 13.98 13.98 0.00 5.28
106 107 6.545666 TGATGAATGCTATGAAAATACCGGTT 59.454 34.615 15.04 0.00 0.00 4.44
107 108 7.717436 TGATGAATGCTATGAAAATACCGGTTA 59.283 33.333 15.04 0.00 0.00 2.85
108 109 7.867305 TGAATGCTATGAAAATACCGGTTAA 57.133 32.000 15.04 0.00 0.00 2.01
109 110 7.925993 TGAATGCTATGAAAATACCGGTTAAG 58.074 34.615 15.04 0.03 0.00 1.85
110 111 6.877611 ATGCTATGAAAATACCGGTTAAGG 57.122 37.500 15.04 0.00 37.30 2.69
111 112 5.991861 TGCTATGAAAATACCGGTTAAGGA 58.008 37.500 15.04 0.00 34.73 3.36
112 113 6.597562 TGCTATGAAAATACCGGTTAAGGAT 58.402 36.000 15.04 0.00 34.73 3.24
113 114 6.708949 TGCTATGAAAATACCGGTTAAGGATC 59.291 38.462 15.04 5.10 34.73 3.36
114 115 6.935208 GCTATGAAAATACCGGTTAAGGATCT 59.065 38.462 15.04 0.00 34.73 2.75
115 116 7.117956 GCTATGAAAATACCGGTTAAGGATCTC 59.882 40.741 15.04 0.95 34.73 2.75
116 117 6.555463 TGAAAATACCGGTTAAGGATCTCT 57.445 37.500 15.04 0.00 34.73 3.10
117 118 7.664552 TGAAAATACCGGTTAAGGATCTCTA 57.335 36.000 15.04 0.00 34.73 2.43
118 119 7.495055 TGAAAATACCGGTTAAGGATCTCTAC 58.505 38.462 15.04 0.00 34.73 2.59
119 120 7.124599 TGAAAATACCGGTTAAGGATCTCTACA 59.875 37.037 15.04 0.00 34.73 2.74
120 121 7.427989 AAATACCGGTTAAGGATCTCTACAA 57.572 36.000 15.04 0.00 34.73 2.41
121 122 7.613551 AATACCGGTTAAGGATCTCTACAAT 57.386 36.000 15.04 0.00 34.73 2.71
122 123 5.952347 ACCGGTTAAGGATCTCTACAATT 57.048 39.130 0.00 0.00 34.73 2.32
123 124 6.309389 ACCGGTTAAGGATCTCTACAATTT 57.691 37.500 0.00 0.00 34.73 1.82
124 125 7.427989 ACCGGTTAAGGATCTCTACAATTTA 57.572 36.000 0.00 0.00 34.73 1.40
125 126 7.498443 ACCGGTTAAGGATCTCTACAATTTAG 58.502 38.462 0.00 0.00 34.73 1.85
126 127 7.343833 ACCGGTTAAGGATCTCTACAATTTAGA 59.656 37.037 0.00 0.00 34.73 2.10
127 128 8.202137 CCGGTTAAGGATCTCTACAATTTAGAA 58.798 37.037 0.00 0.00 0.00 2.10
128 129 9.595823 CGGTTAAGGATCTCTACAATTTAGAAA 57.404 33.333 0.00 0.00 0.00 2.52
167 168 9.069082 TCCCTCTATATAGAAATATAAGAGCGC 57.931 37.037 13.41 0.00 31.59 5.92
168 169 9.073475 CCCTCTATATAGAAATATAAGAGCGCT 57.927 37.037 11.27 11.27 31.59 5.92
176 177 9.796120 ATAGAAATATAAGAGCGCTTAGATCAC 57.204 33.333 13.26 12.97 37.50 3.06
177 178 7.891561 AGAAATATAAGAGCGCTTAGATCACT 58.108 34.615 13.26 14.58 37.50 3.41
178 179 9.015367 AGAAATATAAGAGCGCTTAGATCACTA 57.985 33.333 13.26 3.60 37.50 2.74
179 180 8.973835 AAATATAAGAGCGCTTAGATCACTAC 57.026 34.615 13.26 0.00 37.50 2.73
180 181 7.931578 ATATAAGAGCGCTTAGATCACTACT 57.068 36.000 13.26 0.00 39.79 2.57
181 182 4.993029 AAGAGCGCTTAGATCACTACTT 57.007 40.909 13.26 2.70 37.82 2.24
182 183 4.993029 AGAGCGCTTAGATCACTACTTT 57.007 40.909 13.26 0.00 37.82 2.66
183 184 6.452494 AAGAGCGCTTAGATCACTACTTTA 57.548 37.500 13.26 0.00 37.82 1.85
184 185 6.067263 AGAGCGCTTAGATCACTACTTTAG 57.933 41.667 13.26 0.00 37.82 1.85
185 186 5.591067 AGAGCGCTTAGATCACTACTTTAGT 59.409 40.000 13.26 0.00 37.82 2.24
186 187 7.892212 AAGAGCGCTTAGATCACTACTTTAGTG 60.892 40.741 13.26 6.97 43.89 2.74
217 218 8.744568 AAAGCTCTTATATTTCTTTCAGAGGG 57.255 34.615 0.00 0.00 0.00 4.30
218 219 7.682787 AGCTCTTATATTTCTTTCAGAGGGA 57.317 36.000 0.00 0.00 0.00 4.20
219 220 7.734942 AGCTCTTATATTTCTTTCAGAGGGAG 58.265 38.462 0.00 0.00 0.00 4.30
220 221 7.346960 AGCTCTTATATTTCTTTCAGAGGGAGT 59.653 37.037 0.00 0.00 0.00 3.85
221 222 8.643324 GCTCTTATATTTCTTTCAGAGGGAGTA 58.357 37.037 0.00 0.00 0.00 2.59
222 223 9.974980 CTCTTATATTTCTTTCAGAGGGAGTAC 57.025 37.037 0.00 0.00 0.00 2.73
223 224 9.488762 TCTTATATTTCTTTCAGAGGGAGTACA 57.511 33.333 0.00 0.00 0.00 2.90
226 227 5.825593 TTTCTTTCAGAGGGAGTACATGT 57.174 39.130 2.69 2.69 0.00 3.21
227 228 5.825593 TTCTTTCAGAGGGAGTACATGTT 57.174 39.130 2.30 0.00 0.00 2.71
228 229 6.928348 TTCTTTCAGAGGGAGTACATGTTA 57.072 37.500 2.30 0.00 0.00 2.41
229 230 6.928348 TCTTTCAGAGGGAGTACATGTTAA 57.072 37.500 2.30 0.00 0.00 2.01
230 231 6.698380 TCTTTCAGAGGGAGTACATGTTAAC 58.302 40.000 2.30 0.00 0.00 2.01
231 232 6.269077 TCTTTCAGAGGGAGTACATGTTAACA 59.731 38.462 11.41 11.41 0.00 2.41
232 233 6.428083 TTCAGAGGGAGTACATGTTAACAA 57.572 37.500 13.23 0.00 0.00 2.83
233 234 6.620877 TCAGAGGGAGTACATGTTAACAAT 57.379 37.500 13.23 6.68 0.00 2.71
234 235 7.727578 TCAGAGGGAGTACATGTTAACAATA 57.272 36.000 13.23 5.65 0.00 1.90
235 236 8.141298 TCAGAGGGAGTACATGTTAACAATAA 57.859 34.615 13.23 0.00 0.00 1.40
236 237 8.768397 TCAGAGGGAGTACATGTTAACAATAAT 58.232 33.333 13.23 7.59 0.00 1.28
237 238 9.396022 CAGAGGGAGTACATGTTAACAATAATT 57.604 33.333 13.23 0.00 0.00 1.40
238 239 9.975218 AGAGGGAGTACATGTTAACAATAATTT 57.025 29.630 13.23 0.00 0.00 1.82
270 271 7.727331 TGATTTTTCATGGTTTGTTTGATCC 57.273 32.000 0.00 0.00 0.00 3.36
271 272 7.278135 TGATTTTTCATGGTTTGTTTGATCCA 58.722 30.769 0.00 0.00 0.00 3.41
272 273 7.937942 TGATTTTTCATGGTTTGTTTGATCCAT 59.062 29.630 0.00 0.00 40.73 3.41
273 274 9.434420 GATTTTTCATGGTTTGTTTGATCCATA 57.566 29.630 0.00 0.00 38.43 2.74
274 275 9.962809 ATTTTTCATGGTTTGTTTGATCCATAT 57.037 25.926 0.00 0.00 38.43 1.78
275 276 8.774890 TTTTCATGGTTTGTTTGATCCATATG 57.225 30.769 0.00 0.00 38.43 1.78
276 277 7.715266 TTCATGGTTTGTTTGATCCATATGA 57.285 32.000 3.65 0.00 38.43 2.15
277 278 7.901283 TCATGGTTTGTTTGATCCATATGAT 57.099 32.000 3.65 0.00 38.43 2.45
278 279 8.308851 TCATGGTTTGTTTGATCCATATGATT 57.691 30.769 3.65 0.00 38.43 2.57
279 280 8.760735 TCATGGTTTGTTTGATCCATATGATTT 58.239 29.630 3.65 0.00 38.43 2.17
280 281 8.822855 CATGGTTTGTTTGATCCATATGATTTG 58.177 33.333 3.65 0.00 38.43 2.32
281 282 8.131847 TGGTTTGTTTGATCCATATGATTTGA 57.868 30.769 3.65 0.00 32.41 2.69
282 283 8.760735 TGGTTTGTTTGATCCATATGATTTGAT 58.239 29.630 3.65 0.00 32.41 2.57
283 284 9.252962 GGTTTGTTTGATCCATATGATTTGATC 57.747 33.333 3.65 8.33 32.41 2.92
286 287 8.983702 TGTTTGATCCATATGATTTGATCTGA 57.016 30.769 16.05 6.69 35.69 3.27
287 288 9.582648 TGTTTGATCCATATGATTTGATCTGAT 57.417 29.630 16.05 0.00 35.69 2.90
293 294 8.853077 TCCATATGATTTGATCTGATACAACC 57.147 34.615 3.65 0.00 0.00 3.77
294 295 8.663167 TCCATATGATTTGATCTGATACAACCT 58.337 33.333 3.65 0.00 0.00 3.50
295 296 9.948964 CCATATGATTTGATCTGATACAACCTA 57.051 33.333 3.65 0.00 0.00 3.08
299 300 9.857656 ATGATTTGATCTGATACAACCTACATT 57.142 29.630 0.00 0.00 0.00 2.71
303 304 9.952030 TTTGATCTGATACAACCTACATTACAA 57.048 29.630 0.00 0.00 0.00 2.41
305 306 9.546428 TGATCTGATACAACCTACATTACAATG 57.454 33.333 0.37 0.37 42.10 2.82
307 308 8.942338 TCTGATACAACCTACATTACAATGTC 57.058 34.615 10.74 0.00 46.10 3.06
308 309 8.758829 TCTGATACAACCTACATTACAATGTCT 58.241 33.333 10.74 0.00 46.10 3.41
309 310 9.383519 CTGATACAACCTACATTACAATGTCTT 57.616 33.333 10.74 0.08 46.10 3.01
310 311 9.733556 TGATACAACCTACATTACAATGTCTTT 57.266 29.630 10.74 1.43 46.10 2.52
313 314 7.145323 ACAACCTACATTACAATGTCTTTTGC 58.855 34.615 10.74 0.00 46.10 3.68
314 315 6.892658 ACCTACATTACAATGTCTTTTGCA 57.107 33.333 10.74 0.00 46.10 4.08
315 316 6.677913 ACCTACATTACAATGTCTTTTGCAC 58.322 36.000 10.74 0.00 46.10 4.57
316 317 6.490040 ACCTACATTACAATGTCTTTTGCACT 59.510 34.615 10.74 0.00 46.10 4.40
317 318 7.663905 ACCTACATTACAATGTCTTTTGCACTA 59.336 33.333 10.74 0.00 46.10 2.74
318 319 8.677300 CCTACATTACAATGTCTTTTGCACTAT 58.323 33.333 10.74 0.00 46.10 2.12
319 320 9.708222 CTACATTACAATGTCTTTTGCACTATC 57.292 33.333 10.74 0.00 46.10 2.08
320 321 8.109705 ACATTACAATGTCTTTTGCACTATCA 57.890 30.769 1.70 0.00 46.10 2.15
321 322 8.742777 ACATTACAATGTCTTTTGCACTATCAT 58.257 29.630 1.70 0.00 46.10 2.45
326 327 8.246180 ACAATGTCTTTTGCACTATCATAAAGG 58.754 33.333 5.26 0.00 0.00 3.11
327 328 6.757897 TGTCTTTTGCACTATCATAAAGGG 57.242 37.500 5.26 0.00 0.00 3.95
328 329 6.480763 TGTCTTTTGCACTATCATAAAGGGA 58.519 36.000 5.26 0.00 0.00 4.20
329 330 6.599244 TGTCTTTTGCACTATCATAAAGGGAG 59.401 38.462 5.26 0.00 0.00 4.30
330 331 6.823689 GTCTTTTGCACTATCATAAAGGGAGA 59.176 38.462 5.26 0.00 0.00 3.71
331 332 7.011857 GTCTTTTGCACTATCATAAAGGGAGAG 59.988 40.741 5.26 0.00 0.00 3.20
332 333 6.560003 TTTGCACTATCATAAAGGGAGAGA 57.440 37.500 0.00 0.00 0.00 3.10
333 334 6.560003 TTGCACTATCATAAAGGGAGAGAA 57.440 37.500 0.00 0.00 0.00 2.87
334 335 6.560003 TGCACTATCATAAAGGGAGAGAAA 57.440 37.500 0.00 0.00 0.00 2.52
335 336 6.957631 TGCACTATCATAAAGGGAGAGAAAA 58.042 36.000 0.00 0.00 0.00 2.29
336 337 7.402054 TGCACTATCATAAAGGGAGAGAAAAA 58.598 34.615 0.00 0.00 0.00 1.94
357 358 5.592104 AAACCTTAACTCAAACCACTTGG 57.408 39.130 0.00 0.00 42.17 3.61
358 359 4.513406 ACCTTAACTCAAACCACTTGGA 57.487 40.909 1.14 0.00 38.94 3.53
359 360 4.461198 ACCTTAACTCAAACCACTTGGAG 58.539 43.478 1.14 0.00 38.94 3.86
360 361 4.079958 ACCTTAACTCAAACCACTTGGAGT 60.080 41.667 1.14 0.00 38.94 3.85
361 362 4.275936 CCTTAACTCAAACCACTTGGAGTG 59.724 45.833 1.14 0.00 45.53 3.51
370 371 2.431023 ACTTGGAGTGACTCGTGCT 58.569 52.632 6.50 0.00 0.00 4.40
371 372 0.753262 ACTTGGAGTGACTCGTGCTT 59.247 50.000 6.50 0.00 0.00 3.91
372 373 1.139058 ACTTGGAGTGACTCGTGCTTT 59.861 47.619 6.50 0.00 0.00 3.51
373 374 2.213499 CTTGGAGTGACTCGTGCTTTT 58.787 47.619 6.50 0.00 0.00 2.27
374 375 3.181469 ACTTGGAGTGACTCGTGCTTTTA 60.181 43.478 6.50 0.00 0.00 1.52
375 376 3.026630 TGGAGTGACTCGTGCTTTTAG 57.973 47.619 6.50 0.00 0.00 1.85
376 377 1.727335 GGAGTGACTCGTGCTTTTAGC 59.273 52.381 6.50 0.00 42.82 3.09
377 378 1.727335 GAGTGACTCGTGCTTTTAGCC 59.273 52.381 0.00 0.00 41.51 3.93
378 379 0.438830 GTGACTCGTGCTTTTAGCCG 59.561 55.000 0.00 0.00 41.51 5.52
379 380 0.032952 TGACTCGTGCTTTTAGCCGT 59.967 50.000 0.00 0.00 41.51 5.68
380 381 0.438830 GACTCGTGCTTTTAGCCGTG 59.561 55.000 0.00 0.00 41.51 4.94
381 382 1.132640 CTCGTGCTTTTAGCCGTGC 59.867 57.895 0.00 0.00 41.51 5.34
382 383 1.565156 CTCGTGCTTTTAGCCGTGCA 61.565 55.000 0.00 0.00 41.51 4.57
383 384 1.160946 TCGTGCTTTTAGCCGTGCAA 61.161 50.000 0.00 0.00 41.51 4.08
384 385 0.109781 CGTGCTTTTAGCCGTGCAAT 60.110 50.000 0.00 0.00 41.51 3.56
385 386 1.617740 GTGCTTTTAGCCGTGCAATC 58.382 50.000 0.00 0.00 41.51 2.67
386 387 1.068610 GTGCTTTTAGCCGTGCAATCA 60.069 47.619 0.00 0.00 41.51 2.57
387 388 1.611006 TGCTTTTAGCCGTGCAATCAA 59.389 42.857 0.00 0.00 41.51 2.57
388 389 2.035193 TGCTTTTAGCCGTGCAATCAAA 59.965 40.909 0.00 0.00 41.51 2.69
389 390 2.663119 GCTTTTAGCCGTGCAATCAAAG 59.337 45.455 0.00 0.00 34.48 2.77
390 391 3.611530 GCTTTTAGCCGTGCAATCAAAGA 60.612 43.478 0.00 0.00 34.48 2.52
391 392 3.552604 TTTAGCCGTGCAATCAAAGAC 57.447 42.857 0.00 0.00 0.00 3.01
392 393 1.448985 TAGCCGTGCAATCAAAGACC 58.551 50.000 0.00 0.00 0.00 3.85
393 394 0.537143 AGCCGTGCAATCAAAGACCA 60.537 50.000 0.00 0.00 0.00 4.02
394 395 0.527565 GCCGTGCAATCAAAGACCAT 59.472 50.000 0.00 0.00 0.00 3.55
395 396 1.067635 GCCGTGCAATCAAAGACCATT 60.068 47.619 0.00 0.00 0.00 3.16
396 397 2.867429 CCGTGCAATCAAAGACCATTC 58.133 47.619 0.00 0.00 0.00 2.67
397 398 2.415893 CCGTGCAATCAAAGACCATTCC 60.416 50.000 0.00 0.00 0.00 3.01
398 399 2.489329 CGTGCAATCAAAGACCATTCCT 59.511 45.455 0.00 0.00 0.00 3.36
399 400 3.689161 CGTGCAATCAAAGACCATTCCTA 59.311 43.478 0.00 0.00 0.00 2.94
400 401 4.336433 CGTGCAATCAAAGACCATTCCTAT 59.664 41.667 0.00 0.00 0.00 2.57
401 402 5.504665 CGTGCAATCAAAGACCATTCCTATC 60.505 44.000 0.00 0.00 0.00 2.08
402 403 4.889409 TGCAATCAAAGACCATTCCTATCC 59.111 41.667 0.00 0.00 0.00 2.59
403 404 4.279420 GCAATCAAAGACCATTCCTATCCC 59.721 45.833 0.00 0.00 0.00 3.85
404 405 3.838244 TCAAAGACCATTCCTATCCCG 57.162 47.619 0.00 0.00 0.00 5.14
405 406 3.112263 TCAAAGACCATTCCTATCCCGT 58.888 45.455 0.00 0.00 0.00 5.28
406 407 3.118408 TCAAAGACCATTCCTATCCCGTG 60.118 47.826 0.00 0.00 0.00 4.94
407 408 2.176247 AGACCATTCCTATCCCGTGT 57.824 50.000 0.00 0.00 0.00 4.49
408 409 1.762957 AGACCATTCCTATCCCGTGTG 59.237 52.381 0.00 0.00 0.00 3.82
409 410 1.760613 GACCATTCCTATCCCGTGTGA 59.239 52.381 0.00 0.00 0.00 3.58
410 411 2.368875 GACCATTCCTATCCCGTGTGAT 59.631 50.000 0.00 0.00 0.00 3.06
411 412 2.777692 ACCATTCCTATCCCGTGTGATT 59.222 45.455 0.00 0.00 0.00 2.57
412 413 3.181454 ACCATTCCTATCCCGTGTGATTC 60.181 47.826 0.00 0.00 0.00 2.52
413 414 3.403038 CATTCCTATCCCGTGTGATTCC 58.597 50.000 0.00 0.00 0.00 3.01
414 415 2.168458 TCCTATCCCGTGTGATTCCA 57.832 50.000 0.00 0.00 0.00 3.53
415 416 2.473070 TCCTATCCCGTGTGATTCCAA 58.527 47.619 0.00 0.00 0.00 3.53
416 417 2.841266 TCCTATCCCGTGTGATTCCAAA 59.159 45.455 0.00 0.00 0.00 3.28
417 418 3.458118 TCCTATCCCGTGTGATTCCAAAT 59.542 43.478 0.00 0.00 0.00 2.32
418 419 3.565482 CCTATCCCGTGTGATTCCAAATG 59.435 47.826 0.00 0.00 0.00 2.32
419 420 2.577606 TCCCGTGTGATTCCAAATGT 57.422 45.000 0.00 0.00 0.00 2.71
420 421 2.432444 TCCCGTGTGATTCCAAATGTC 58.568 47.619 0.00 0.00 0.00 3.06
421 422 2.158559 CCCGTGTGATTCCAAATGTCA 58.841 47.619 0.00 0.00 0.00 3.58
422 423 2.095263 CCCGTGTGATTCCAAATGTCAC 60.095 50.000 0.00 0.00 41.90 3.67
427 428 5.787953 TGTGATTCCAAATGTCACAACAT 57.212 34.783 5.07 0.00 46.45 2.71
436 437 2.346766 TGTCACAACATTGCACTCCT 57.653 45.000 0.00 0.00 0.00 3.69
437 438 3.483808 TGTCACAACATTGCACTCCTA 57.516 42.857 0.00 0.00 0.00 2.94
438 439 4.019792 TGTCACAACATTGCACTCCTAT 57.980 40.909 0.00 0.00 0.00 2.57
439 440 3.752747 TGTCACAACATTGCACTCCTATG 59.247 43.478 0.00 0.00 33.63 2.23
440 441 3.753272 GTCACAACATTGCACTCCTATGT 59.247 43.478 0.00 0.00 40.78 2.29
441 442 4.216257 GTCACAACATTGCACTCCTATGTT 59.784 41.667 7.70 7.70 46.14 2.71
442 443 4.826733 TCACAACATTGCACTCCTATGTTT 59.173 37.500 10.31 2.00 43.95 2.83
443 444 5.048782 TCACAACATTGCACTCCTATGTTTC 60.049 40.000 10.31 0.00 43.95 2.78
444 445 5.048504 CACAACATTGCACTCCTATGTTTCT 60.049 40.000 10.31 0.00 43.95 2.52
445 446 5.536161 ACAACATTGCACTCCTATGTTTCTT 59.464 36.000 10.31 0.00 43.95 2.52
446 447 5.633830 ACATTGCACTCCTATGTTTCTTG 57.366 39.130 0.00 0.00 36.68 3.02
447 448 5.316167 ACATTGCACTCCTATGTTTCTTGA 58.684 37.500 0.00 0.00 36.68 3.02
448 449 5.769662 ACATTGCACTCCTATGTTTCTTGAA 59.230 36.000 0.00 0.00 36.68 2.69
449 450 6.265196 ACATTGCACTCCTATGTTTCTTGAAA 59.735 34.615 0.00 0.00 36.68 2.69
450 451 6.707440 TTGCACTCCTATGTTTCTTGAAAA 57.293 33.333 0.00 0.00 0.00 2.29
451 452 6.072112 TGCACTCCTATGTTTCTTGAAAAC 57.928 37.500 0.00 0.00 0.00 2.43
452 453 5.592282 TGCACTCCTATGTTTCTTGAAAACA 59.408 36.000 5.87 5.87 43.33 2.83
454 455 6.583806 GCACTCCTATGTTTCTTGAAAACATG 59.416 38.462 20.67 12.85 46.68 3.21
455 456 7.651808 CACTCCTATGTTTCTTGAAAACATGT 58.348 34.615 20.67 10.72 46.68 3.21
456 457 7.592533 CACTCCTATGTTTCTTGAAAACATGTG 59.407 37.037 20.67 16.48 46.68 3.21
457 458 6.980593 TCCTATGTTTCTTGAAAACATGTGG 58.019 36.000 20.67 20.16 46.68 4.17
458 459 6.775142 TCCTATGTTTCTTGAAAACATGTGGA 59.225 34.615 20.67 21.47 46.68 4.02
459 460 6.863126 CCTATGTTTCTTGAAAACATGTGGAC 59.137 38.462 20.67 0.00 46.68 4.02
460 461 5.004922 TGTTTCTTGAAAACATGTGGACC 57.995 39.130 0.00 0.00 35.45 4.46
461 462 4.464244 TGTTTCTTGAAAACATGTGGACCA 59.536 37.500 0.00 0.00 35.45 4.02
462 463 5.128499 TGTTTCTTGAAAACATGTGGACCAT 59.872 36.000 0.00 0.00 35.45 3.55
463 464 6.322456 TGTTTCTTGAAAACATGTGGACCATA 59.678 34.615 0.00 0.00 35.45 2.74
464 465 7.015098 TGTTTCTTGAAAACATGTGGACCATAT 59.985 33.333 0.00 0.00 35.45 1.78
465 466 7.537596 TTCTTGAAAACATGTGGACCATATT 57.462 32.000 0.00 0.00 30.71 1.28
466 467 7.537596 TCTTGAAAACATGTGGACCATATTT 57.462 32.000 0.00 0.00 31.53 1.40
467 468 7.601856 TCTTGAAAACATGTGGACCATATTTC 58.398 34.615 0.00 3.78 38.17 2.17
468 469 5.948588 TGAAAACATGTGGACCATATTTCG 58.051 37.500 0.00 0.00 39.29 3.46
469 470 4.981806 AAACATGTGGACCATATTTCGG 57.018 40.909 0.00 0.00 22.83 4.30
470 471 3.924114 ACATGTGGACCATATTTCGGA 57.076 42.857 0.05 0.00 30.71 4.55
471 472 4.437682 ACATGTGGACCATATTTCGGAT 57.562 40.909 0.05 0.00 30.71 4.18
472 473 4.136796 ACATGTGGACCATATTTCGGATG 58.863 43.478 0.05 0.00 30.71 3.51
473 474 2.571212 TGTGGACCATATTTCGGATGC 58.429 47.619 0.00 0.00 0.00 3.91
474 475 2.092699 TGTGGACCATATTTCGGATGCA 60.093 45.455 0.00 0.00 0.00 3.96
475 476 2.948979 GTGGACCATATTTCGGATGCAA 59.051 45.455 0.00 0.00 0.00 4.08
476 477 3.380004 GTGGACCATATTTCGGATGCAAA 59.620 43.478 0.00 0.00 0.00 3.68
477 478 4.019858 TGGACCATATTTCGGATGCAAAA 58.980 39.130 0.00 0.00 0.00 2.44
478 479 4.648762 TGGACCATATTTCGGATGCAAAAT 59.351 37.500 0.00 0.00 0.00 1.82
479 480 5.128499 TGGACCATATTTCGGATGCAAAATT 59.872 36.000 0.00 0.00 0.00 1.82
480 481 6.048509 GGACCATATTTCGGATGCAAAATTT 58.951 36.000 0.00 0.00 0.00 1.82
481 482 6.018832 GGACCATATTTCGGATGCAAAATTTG 60.019 38.462 0.57 0.57 0.00 2.32
482 483 6.638610 ACCATATTTCGGATGCAAAATTTGA 58.361 32.000 10.26 0.00 30.24 2.69
483 484 7.102346 ACCATATTTCGGATGCAAAATTTGAA 58.898 30.769 10.26 0.00 30.24 2.69
484 485 7.278424 ACCATATTTCGGATGCAAAATTTGAAG 59.722 33.333 10.26 0.00 30.24 3.02
485 486 4.988708 TTTCGGATGCAAAATTTGAAGC 57.011 36.364 10.26 0.89 0.00 3.86
486 487 2.958213 TCGGATGCAAAATTTGAAGCC 58.042 42.857 10.87 10.87 41.54 4.35
487 488 2.562298 TCGGATGCAAAATTTGAAGCCT 59.438 40.909 17.86 0.00 42.83 4.58
488 489 3.761218 TCGGATGCAAAATTTGAAGCCTA 59.239 39.130 17.86 5.29 42.83 3.93
489 490 4.107622 CGGATGCAAAATTTGAAGCCTAG 58.892 43.478 17.86 0.84 42.83 3.02
490 491 4.142403 CGGATGCAAAATTTGAAGCCTAGA 60.142 41.667 17.86 0.00 42.83 2.43
491 492 5.346522 GGATGCAAAATTTGAAGCCTAGAG 58.653 41.667 13.48 0.00 41.72 2.43
492 493 5.126061 GGATGCAAAATTTGAAGCCTAGAGA 59.874 40.000 13.48 0.00 41.72 3.10
493 494 5.633830 TGCAAAATTTGAAGCCTAGAGAG 57.366 39.130 10.26 0.00 0.00 3.20
508 509 4.865365 CCTAGAGAGAAAACGTGTGATTCC 59.135 45.833 0.00 0.00 0.00 3.01
525 526 0.739462 TCCGATGTCATCACGTTGGC 60.739 55.000 13.22 0.00 41.54 4.52
622 627 6.387041 ACCTTAGTTGCTGTTTCTAAAACC 57.613 37.500 0.48 0.00 0.00 3.27
624 629 6.378848 ACCTTAGTTGCTGTTTCTAAAACCAA 59.621 34.615 0.48 0.00 0.00 3.67
633 638 8.203485 TGCTGTTTCTAAAACCAATGAGAAATT 58.797 29.630 0.00 0.00 39.43 1.82
635 640 9.196552 CTGTTTCTAAAACCAATGAGAAATTCC 57.803 33.333 0.00 0.00 39.43 3.01
644 649 5.534654 ACCAATGAGAAATTCCAAGTCGAAA 59.465 36.000 0.00 0.00 0.00 3.46
646 651 7.092716 CCAATGAGAAATTCCAAGTCGAAAAT 58.907 34.615 0.00 0.00 0.00 1.82
647 652 8.243426 CCAATGAGAAATTCCAAGTCGAAAATA 58.757 33.333 0.00 0.00 0.00 1.40
648 653 9.624697 CAATGAGAAATTCCAAGTCGAAAATAA 57.375 29.630 0.00 0.00 0.00 1.40
649 654 9.846248 AATGAGAAATTCCAAGTCGAAAATAAG 57.154 29.630 0.00 0.00 0.00 1.73
675 681 6.470557 TTTTTACGGGTGAAGTCGAATAAG 57.529 37.500 0.00 0.00 0.00 1.73
681 687 4.143179 CGGGTGAAGTCGAATAAGTTTCAC 60.143 45.833 6.17 6.17 44.13 3.18
682 688 4.753107 GGGTGAAGTCGAATAAGTTTCACA 59.247 41.667 14.39 0.00 45.73 3.58
683 689 5.333875 GGGTGAAGTCGAATAAGTTTCACAC 60.334 44.000 14.39 8.62 45.73 3.82
684 690 5.465724 GGTGAAGTCGAATAAGTTTCACACT 59.534 40.000 14.39 0.00 45.73 3.55
686 692 4.992381 AGTCGAATAAGTTTCACACTGC 57.008 40.909 0.00 0.00 35.12 4.40
687 693 4.377021 AGTCGAATAAGTTTCACACTGCA 58.623 39.130 0.00 0.00 35.12 4.41
688 694 4.814234 AGTCGAATAAGTTTCACACTGCAA 59.186 37.500 0.00 0.00 35.12 4.08
693 725 6.857964 CGAATAAGTTTCACACTGCAAAAGAT 59.142 34.615 0.00 0.00 35.12 2.40
701 733 6.060028 TCACACTGCAAAAGATCAAGTTAC 57.940 37.500 0.00 0.00 0.00 2.50
708 740 8.196771 ACTGCAAAAGATCAAGTTACATGAAAA 58.803 29.630 0.00 0.00 0.00 2.29
740 793 6.170675 CAGTATGTTTTAACTGAGGAGCAC 57.829 41.667 0.00 0.00 44.79 4.40
741 794 5.700832 CAGTATGTTTTAACTGAGGAGCACA 59.299 40.000 0.00 0.00 44.79 4.57
758 811 2.664916 CACAAATGTGCAACCACTAGC 58.335 47.619 0.00 0.00 42.54 3.42
759 812 2.034432 CACAAATGTGCAACCACTAGCA 59.966 45.455 0.00 0.00 42.54 3.49
760 813 2.294233 ACAAATGTGCAACCACTAGCAG 59.706 45.455 0.00 0.00 42.14 4.24
761 814 0.883833 AATGTGCAACCACTAGCAGC 59.116 50.000 0.00 0.00 42.14 5.25
762 815 0.250858 ATGTGCAACCACTAGCAGCA 60.251 50.000 0.00 0.00 42.14 4.41
763 816 4.063529 TGCAACCACTAGCAGCAC 57.936 55.556 0.00 0.00 35.51 4.40
764 817 1.148048 TGCAACCACTAGCAGCACA 59.852 52.632 0.00 0.00 35.51 4.57
766 819 0.883833 GCAACCACTAGCAGCACATT 59.116 50.000 0.00 0.00 0.00 2.71
776 829 6.183360 CCACTAGCAGCACATTAATTGAATGA 60.183 38.462 0.48 0.00 46.94 2.57
777 830 7.252708 CACTAGCAGCACATTAATTGAATGAA 58.747 34.615 0.48 0.00 46.94 2.57
778 831 7.219535 CACTAGCAGCACATTAATTGAATGAAC 59.780 37.037 0.48 0.00 46.94 3.18
779 832 5.097529 AGCAGCACATTAATTGAATGAACG 58.902 37.500 0.48 0.00 46.94 3.95
780 833 4.858692 GCAGCACATTAATTGAATGAACGT 59.141 37.500 0.48 0.00 46.94 3.99
781 834 5.220080 GCAGCACATTAATTGAATGAACGTG 60.220 40.000 0.48 0.00 46.94 4.49
783 836 6.363088 CAGCACATTAATTGAATGAACGTGTT 59.637 34.615 3.70 0.00 46.94 3.32
784 837 7.536964 CAGCACATTAATTGAATGAACGTGTTA 59.463 33.333 3.70 0.00 46.94 2.41
785 838 7.537306 AGCACATTAATTGAATGAACGTGTTAC 59.463 33.333 3.70 0.00 46.94 2.50
786 839 7.537306 GCACATTAATTGAATGAACGTGTTACT 59.463 33.333 3.70 0.00 46.94 2.24
787 840 8.839914 CACATTAATTGAATGAACGTGTTACTG 58.160 33.333 0.48 0.00 46.94 2.74
788 841 8.564574 ACATTAATTGAATGAACGTGTTACTGT 58.435 29.630 0.48 0.00 46.94 3.55
898 952 3.112580 CAAATTCGTTGGCTGTTCGTTT 58.887 40.909 0.00 0.00 33.18 3.60
899 953 3.430333 AATTCGTTGGCTGTTCGTTTT 57.570 38.095 0.00 0.00 0.00 2.43
915 969 1.057851 TTTTCGGACCCTCCCACACT 61.058 55.000 0.00 0.00 31.13 3.55
916 970 1.477685 TTTCGGACCCTCCCACACTC 61.478 60.000 0.00 0.00 31.13 3.51
917 971 3.391382 CGGACCCTCCCACACTCC 61.391 72.222 0.00 0.00 31.13 3.85
918 972 3.009714 GGACCCTCCCACACTCCC 61.010 72.222 0.00 0.00 0.00 4.30
920 974 3.542602 ACCCTCCCACACTCCCCT 61.543 66.667 0.00 0.00 0.00 4.79
921 975 3.011517 CCCTCCCACACTCCCCTG 61.012 72.222 0.00 0.00 0.00 4.45
922 976 2.203998 CCTCCCACACTCCCCTGT 60.204 66.667 0.00 0.00 0.00 4.00
926 985 2.294078 CCCACACTCCCCTGTCCTC 61.294 68.421 0.00 0.00 0.00 3.71
1015 1074 4.988598 CTGCCGCCACCGTCACTT 62.989 66.667 0.00 0.00 0.00 3.16
1022 1081 2.317609 CCACCGTCACTTGCTTCCG 61.318 63.158 0.00 0.00 0.00 4.30
1023 1082 2.665185 ACCGTCACTTGCTTCCGC 60.665 61.111 0.00 0.00 0.00 5.54
1025 1084 1.080093 CCGTCACTTGCTTCCGCTA 60.080 57.895 0.00 0.00 36.97 4.26
1030 1089 0.388649 CACTTGCTTCCGCTACTCGT 60.389 55.000 0.00 0.00 36.97 4.18
1041 1100 1.719709 CTACTCGTGCCGATCGTCA 59.280 57.895 15.09 4.04 34.61 4.35
1193 1258 3.089874 CCCTCCGGCATCCTCCAA 61.090 66.667 0.00 0.00 0.00 3.53
1220 1285 1.734477 CGACACCAAGGAGACGCTG 60.734 63.158 0.00 0.00 0.00 5.18
1432 1497 2.023414 AACACGTCGAACAGCCTGGA 62.023 55.000 0.00 0.00 0.00 3.86
1445 1510 1.003355 CCTGGACAACGGCATGAGT 60.003 57.895 0.00 0.00 0.00 3.41
1551 1616 1.524863 CCTCCACTCCGTCAACTCGT 61.525 60.000 0.00 0.00 0.00 4.18
1556 1621 1.105167 ACTCCGTCAACTCGTCCACA 61.105 55.000 0.00 0.00 0.00 4.17
1603 1668 1.592223 GTGGGAGGAGGTTCGACAG 59.408 63.158 0.00 0.00 0.00 3.51
1669 1734 0.525668 GAGTATGACGGTGACAGCGG 60.526 60.000 28.55 12.50 44.33 5.52
1729 1794 2.352805 GGCCCTCCCACTCTTGTG 59.647 66.667 0.00 0.00 43.45 3.33
1835 1900 1.594331 ACGTTCTTGGCTGGAGTTTC 58.406 50.000 0.00 0.00 0.00 2.78
3065 3594 2.677524 TTCCCGTCCACGTCCGAT 60.678 61.111 0.00 0.00 37.74 4.18
3137 3666 5.669477 AGTGACTTCCATTCAAGCTAGATC 58.331 41.667 0.00 0.00 0.00 2.75
3156 3685 0.523072 CAGCAAATACAGCCGCAAGT 59.477 50.000 0.00 0.00 0.00 3.16
3165 3694 1.269936 ACAGCCGCAAGTAGTACGTTT 60.270 47.619 0.00 0.00 0.00 3.60
3208 3737 6.610741 AAACATCTGAACTGAGAAGAACAC 57.389 37.500 0.00 0.00 0.00 3.32
3214 3743 7.531857 TCTGAACTGAGAAGAACACTTCTAT 57.468 36.000 11.61 0.33 46.73 1.98
3215 3744 7.598278 TCTGAACTGAGAAGAACACTTCTATC 58.402 38.462 11.61 8.96 46.73 2.08
3216 3745 7.231519 TCTGAACTGAGAAGAACACTTCTATCA 59.768 37.037 11.61 11.96 46.73 2.15
3217 3746 7.374272 TGAACTGAGAAGAACACTTCTATCAG 58.626 38.462 18.63 18.63 46.73 2.90
3218 3747 7.231519 TGAACTGAGAAGAACACTTCTATCAGA 59.768 37.037 23.19 8.99 46.39 3.27
3244 3782 6.943899 TTTTATAAAGGCCCAAATGAGGTT 57.056 33.333 0.00 0.00 0.00 3.50
3349 4871 9.378551 TGACTCAAGAATGTATGTATTTACACC 57.621 33.333 0.00 0.00 39.30 4.16
3468 4990 1.411394 GTGCGCAACTCGTAGTTACA 58.589 50.000 14.00 0.00 36.03 2.41
3470 4992 0.365859 GCGCAACTCGTAGTTACAGC 59.634 55.000 0.30 3.88 36.03 4.40
3474 4996 2.248487 CAACTCGTAGTTACAGCCGAC 58.752 52.381 0.87 0.00 36.03 4.79
3477 4999 1.870901 CGTAGTTACAGCCGACGCC 60.871 63.158 0.00 0.00 34.57 5.68
3643 5166 1.358725 CCTCGATTTTCGGAAGCGCA 61.359 55.000 11.47 0.00 40.88 6.09
3839 5362 6.757897 ATTTCTTTCACCAAAGATATCGCA 57.242 33.333 0.00 0.00 46.05 5.10
3841 5364 5.545658 TCTTTCACCAAAGATATCGCAAC 57.454 39.130 0.00 0.00 42.66 4.17
4012 5570 3.681417 TCACAAATGCAATCGAGTGAGAG 59.319 43.478 18.43 3.51 30.98 3.20
4018 5576 0.820226 CAATCGAGTGAGAGCTCCCA 59.180 55.000 10.93 0.42 32.11 4.37
4103 5661 8.128582 TCTGTGCTGTAAATTTTTCAACTACAG 58.871 33.333 9.62 9.62 41.47 2.74
4164 5745 5.534278 TGATTCATCCACACTTTGCAGTTTA 59.466 36.000 0.00 0.00 0.00 2.01
4240 5824 0.250124 TGGCAAACCAGATTCGTCGT 60.250 50.000 0.00 0.00 42.67 4.34
4253 5837 0.319211 TCGTCGTGACCATCACCAAC 60.319 55.000 3.45 2.09 44.20 3.77
4261 5845 3.004315 GTGACCATCACCAACGTCAAAAT 59.996 43.478 0.00 0.00 41.37 1.82
4268 5852 3.317711 TCACCAACGTCAAAATGAAGCAT 59.682 39.130 0.00 0.00 28.70 3.79
4275 5859 4.456911 ACGTCAAAATGAAGCATGAGTGAT 59.543 37.500 0.00 0.00 28.70 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.487484 TGTTGAATGCATGTTTAGAAGTTTCA 58.513 30.769 0.00 0.00 0.00 2.69
1 2 7.928908 TGTTGAATGCATGTTTAGAAGTTTC 57.071 32.000 0.00 0.00 0.00 2.78
2 3 8.301730 CATGTTGAATGCATGTTTAGAAGTTT 57.698 30.769 0.00 0.00 38.96 2.66
3 4 7.878477 CATGTTGAATGCATGTTTAGAAGTT 57.122 32.000 0.00 0.00 38.96 2.66
30 31 4.213270 CGATGGAGCACTGTGTTCTAAAAA 59.787 41.667 21.32 5.98 0.00 1.94
31 32 3.745975 CGATGGAGCACTGTGTTCTAAAA 59.254 43.478 21.32 8.05 0.00 1.52
32 33 3.006430 TCGATGGAGCACTGTGTTCTAAA 59.994 43.478 21.32 10.15 0.00 1.85
33 34 2.560981 TCGATGGAGCACTGTGTTCTAA 59.439 45.455 21.32 12.28 0.00 2.10
34 35 2.164422 CTCGATGGAGCACTGTGTTCTA 59.836 50.000 21.32 17.19 32.61 2.10
35 36 0.969149 TCGATGGAGCACTGTGTTCT 59.031 50.000 21.32 6.15 0.00 3.01
36 37 1.337260 ACTCGATGGAGCACTGTGTTC 60.337 52.381 15.27 15.27 44.48 3.18
37 38 0.681733 ACTCGATGGAGCACTGTGTT 59.318 50.000 9.86 2.67 44.48 3.32
38 39 0.244994 GACTCGATGGAGCACTGTGT 59.755 55.000 9.86 0.00 44.48 3.72
39 40 0.459237 GGACTCGATGGAGCACTGTG 60.459 60.000 4.41 2.76 44.48 3.66
40 41 0.900182 TGGACTCGATGGAGCACTGT 60.900 55.000 4.41 0.00 44.48 3.55
41 42 0.247460 TTGGACTCGATGGAGCACTG 59.753 55.000 4.41 0.00 44.48 3.66
42 43 0.534412 CTTGGACTCGATGGAGCACT 59.466 55.000 4.41 0.00 44.48 4.40
43 44 0.532573 TCTTGGACTCGATGGAGCAC 59.467 55.000 4.41 0.00 44.48 4.40
44 45 0.820226 CTCTTGGACTCGATGGAGCA 59.180 55.000 4.41 0.00 44.48 4.26
45 46 0.529555 GCTCTTGGACTCGATGGAGC 60.530 60.000 4.41 0.00 44.48 4.70
46 47 0.103937 GGCTCTTGGACTCGATGGAG 59.896 60.000 2.78 2.78 46.13 3.86
47 48 0.614697 TGGCTCTTGGACTCGATGGA 60.615 55.000 0.00 0.00 0.00 3.41
48 49 0.250234 TTGGCTCTTGGACTCGATGG 59.750 55.000 0.00 0.00 0.00 3.51
49 50 1.066573 ACTTGGCTCTTGGACTCGATG 60.067 52.381 0.00 0.00 0.00 3.84
50 51 1.270907 ACTTGGCTCTTGGACTCGAT 58.729 50.000 0.00 0.00 0.00 3.59
51 52 1.048601 AACTTGGCTCTTGGACTCGA 58.951 50.000 0.00 0.00 0.00 4.04
52 53 2.743636 TAACTTGGCTCTTGGACTCG 57.256 50.000 0.00 0.00 0.00 4.18
53 54 4.876679 GGTAATAACTTGGCTCTTGGACTC 59.123 45.833 0.00 0.00 0.00 3.36
54 55 4.288626 TGGTAATAACTTGGCTCTTGGACT 59.711 41.667 0.00 0.00 0.00 3.85
55 56 4.585879 TGGTAATAACTTGGCTCTTGGAC 58.414 43.478 0.00 0.00 0.00 4.02
56 57 4.843728 CTGGTAATAACTTGGCTCTTGGA 58.156 43.478 0.00 0.00 0.00 3.53
57 58 3.378427 GCTGGTAATAACTTGGCTCTTGG 59.622 47.826 0.00 0.00 0.00 3.61
58 59 4.265073 AGCTGGTAATAACTTGGCTCTTG 58.735 43.478 0.00 0.00 0.00 3.02
59 60 4.576330 AGCTGGTAATAACTTGGCTCTT 57.424 40.909 0.00 0.00 0.00 2.85
60 61 4.019321 TCAAGCTGGTAATAACTTGGCTCT 60.019 41.667 0.00 0.00 39.92 4.09
61 62 4.261801 TCAAGCTGGTAATAACTTGGCTC 58.738 43.478 0.00 0.00 39.92 4.70
62 63 4.301072 TCAAGCTGGTAATAACTTGGCT 57.699 40.909 0.00 0.00 39.92 4.75
63 64 4.640201 TCATCAAGCTGGTAATAACTTGGC 59.360 41.667 0.00 0.00 39.92 4.52
64 65 6.757897 TTCATCAAGCTGGTAATAACTTGG 57.242 37.500 0.00 0.00 39.92 3.61
65 66 6.694411 GCATTCATCAAGCTGGTAATAACTTG 59.306 38.462 0.00 0.00 40.66 3.16
66 67 6.604795 AGCATTCATCAAGCTGGTAATAACTT 59.395 34.615 0.00 0.00 37.20 2.66
67 68 6.125029 AGCATTCATCAAGCTGGTAATAACT 58.875 36.000 0.00 0.00 37.20 2.24
68 69 6.382869 AGCATTCATCAAGCTGGTAATAAC 57.617 37.500 0.00 0.00 37.20 1.89
69 70 7.938490 TCATAGCATTCATCAAGCTGGTAATAA 59.062 33.333 0.00 0.00 39.30 1.40
70 71 7.452562 TCATAGCATTCATCAAGCTGGTAATA 58.547 34.615 0.00 0.00 39.30 0.98
71 72 6.301486 TCATAGCATTCATCAAGCTGGTAAT 58.699 36.000 0.00 0.00 39.30 1.89
72 73 5.683681 TCATAGCATTCATCAAGCTGGTAA 58.316 37.500 0.00 0.00 39.30 2.85
73 74 5.294734 TCATAGCATTCATCAAGCTGGTA 57.705 39.130 0.00 0.00 39.30 3.25
74 75 4.160642 TCATAGCATTCATCAAGCTGGT 57.839 40.909 0.00 0.00 39.30 4.00
75 76 5.509716 TTTCATAGCATTCATCAAGCTGG 57.490 39.130 0.00 0.00 39.30 4.85
76 77 7.594015 GGTATTTTCATAGCATTCATCAAGCTG 59.406 37.037 0.00 0.00 39.30 4.24
77 78 7.521099 CGGTATTTTCATAGCATTCATCAAGCT 60.521 37.037 0.00 0.00 42.14 3.74
78 79 6.580041 CGGTATTTTCATAGCATTCATCAAGC 59.420 38.462 0.00 0.00 33.57 4.01
79 80 7.080099 CCGGTATTTTCATAGCATTCATCAAG 58.920 38.462 0.00 0.00 33.57 3.02
80 81 6.545666 ACCGGTATTTTCATAGCATTCATCAA 59.454 34.615 4.49 0.00 33.57 2.57
81 82 6.061441 ACCGGTATTTTCATAGCATTCATCA 58.939 36.000 4.49 0.00 33.57 3.07
82 83 6.560253 ACCGGTATTTTCATAGCATTCATC 57.440 37.500 4.49 0.00 33.57 2.92
83 84 6.959639 AACCGGTATTTTCATAGCATTCAT 57.040 33.333 8.00 0.00 33.57 2.57
84 85 7.012894 CCTTAACCGGTATTTTCATAGCATTCA 59.987 37.037 8.00 0.00 33.57 2.57
85 86 7.227910 TCCTTAACCGGTATTTTCATAGCATTC 59.772 37.037 8.00 0.00 33.57 2.67
86 87 7.057894 TCCTTAACCGGTATTTTCATAGCATT 58.942 34.615 8.00 0.00 33.57 3.56
87 88 6.597562 TCCTTAACCGGTATTTTCATAGCAT 58.402 36.000 8.00 0.00 33.57 3.79
88 89 5.991861 TCCTTAACCGGTATTTTCATAGCA 58.008 37.500 8.00 0.00 33.57 3.49
89 90 6.935208 AGATCCTTAACCGGTATTTTCATAGC 59.065 38.462 8.00 0.00 0.00 2.97
90 91 8.368668 AGAGATCCTTAACCGGTATTTTCATAG 58.631 37.037 8.00 0.00 0.00 2.23
91 92 8.258850 AGAGATCCTTAACCGGTATTTTCATA 57.741 34.615 8.00 0.00 0.00 2.15
92 93 7.138054 AGAGATCCTTAACCGGTATTTTCAT 57.862 36.000 8.00 0.00 0.00 2.57
93 94 6.555463 AGAGATCCTTAACCGGTATTTTCA 57.445 37.500 8.00 0.00 0.00 2.69
94 95 7.495055 TGTAGAGATCCTTAACCGGTATTTTC 58.505 38.462 8.00 0.39 0.00 2.29
95 96 7.427989 TGTAGAGATCCTTAACCGGTATTTT 57.572 36.000 8.00 0.00 0.00 1.82
96 97 7.427989 TTGTAGAGATCCTTAACCGGTATTT 57.572 36.000 8.00 0.00 0.00 1.40
97 98 7.613551 ATTGTAGAGATCCTTAACCGGTATT 57.386 36.000 8.00 0.00 0.00 1.89
98 99 7.613551 AATTGTAGAGATCCTTAACCGGTAT 57.386 36.000 8.00 0.00 0.00 2.73
99 100 7.427989 AAATTGTAGAGATCCTTAACCGGTA 57.572 36.000 8.00 0.00 0.00 4.02
100 101 5.952347 AATTGTAGAGATCCTTAACCGGT 57.048 39.130 0.00 0.00 0.00 5.28
101 102 7.723324 TCTAAATTGTAGAGATCCTTAACCGG 58.277 38.462 0.00 0.00 0.00 5.28
102 103 9.595823 TTTCTAAATTGTAGAGATCCTTAACCG 57.404 33.333 0.00 0.00 0.00 4.44
141 142 9.069082 GCGCTCTTATATTTCTATATAGAGGGA 57.931 37.037 12.16 4.22 38.39 4.20
142 143 9.073475 AGCGCTCTTATATTTCTATATAGAGGG 57.927 37.037 2.64 8.79 38.66 4.30
150 151 9.796120 GTGATCTAAGCGCTCTTATATTTCTAT 57.204 33.333 12.06 0.00 34.54 1.98
151 152 9.015367 AGTGATCTAAGCGCTCTTATATTTCTA 57.985 33.333 12.06 0.00 34.54 2.10
152 153 7.891561 AGTGATCTAAGCGCTCTTATATTTCT 58.108 34.615 12.06 0.00 34.54 2.52
153 154 9.068008 GTAGTGATCTAAGCGCTCTTATATTTC 57.932 37.037 12.06 0.76 34.54 2.17
154 155 8.798402 AGTAGTGATCTAAGCGCTCTTATATTT 58.202 33.333 12.06 0.00 34.54 1.40
155 156 8.343168 AGTAGTGATCTAAGCGCTCTTATATT 57.657 34.615 12.06 0.00 34.54 1.28
156 157 7.931578 AGTAGTGATCTAAGCGCTCTTATAT 57.068 36.000 12.06 0.00 34.54 0.86
157 158 7.747155 AAGTAGTGATCTAAGCGCTCTTATA 57.253 36.000 12.06 0.00 34.54 0.98
158 159 6.642707 AAGTAGTGATCTAAGCGCTCTTAT 57.357 37.500 12.06 3.87 34.54 1.73
159 160 6.452494 AAAGTAGTGATCTAAGCGCTCTTA 57.548 37.500 12.06 0.00 33.85 2.10
160 161 4.993029 AAGTAGTGATCTAAGCGCTCTT 57.007 40.909 12.06 2.09 36.35 2.85
161 162 4.993029 AAAGTAGTGATCTAAGCGCTCT 57.007 40.909 12.06 3.67 0.00 4.09
162 163 5.823353 ACTAAAGTAGTGATCTAAGCGCTC 58.177 41.667 12.06 0.00 37.69 5.03
163 164 5.838531 ACTAAAGTAGTGATCTAAGCGCT 57.161 39.130 2.64 2.64 37.69 5.92
191 192 9.183368 CCCTCTGAAAGAAATATAAGAGCTTTT 57.817 33.333 0.00 0.00 46.34 2.27
192 193 8.552296 TCCCTCTGAAAGAAATATAAGAGCTTT 58.448 33.333 0.00 0.00 46.34 3.51
193 194 8.095452 TCCCTCTGAAAGAAATATAAGAGCTT 57.905 34.615 0.00 0.00 46.34 3.74
194 195 7.346960 ACTCCCTCTGAAAGAAATATAAGAGCT 59.653 37.037 0.00 0.00 46.34 4.09
195 196 7.505258 ACTCCCTCTGAAAGAAATATAAGAGC 58.495 38.462 0.00 0.00 46.34 4.09
196 197 9.974980 GTACTCCCTCTGAAAGAAATATAAGAG 57.025 37.037 0.00 0.00 46.34 2.85
197 198 9.488762 TGTACTCCCTCTGAAAGAAATATAAGA 57.511 33.333 0.00 0.00 46.34 2.10
200 201 9.213777 ACATGTACTCCCTCTGAAAGAAATATA 57.786 33.333 0.00 0.00 46.34 0.86
201 202 8.095452 ACATGTACTCCCTCTGAAAGAAATAT 57.905 34.615 0.00 0.00 46.34 1.28
202 203 7.496346 ACATGTACTCCCTCTGAAAGAAATA 57.504 36.000 0.00 0.00 46.34 1.40
203 204 6.380079 ACATGTACTCCCTCTGAAAGAAAT 57.620 37.500 0.00 0.00 46.34 2.17
204 205 5.825593 ACATGTACTCCCTCTGAAAGAAA 57.174 39.130 0.00 0.00 46.34 2.52
205 206 5.825593 AACATGTACTCCCTCTGAAAGAA 57.174 39.130 0.00 0.00 46.34 2.52
206 207 6.269077 TGTTAACATGTACTCCCTCTGAAAGA 59.731 38.462 3.59 0.00 43.69 2.52
207 208 6.464222 TGTTAACATGTACTCCCTCTGAAAG 58.536 40.000 3.59 0.00 0.00 2.62
208 209 6.428083 TGTTAACATGTACTCCCTCTGAAA 57.572 37.500 3.59 0.00 0.00 2.69
209 210 6.428083 TTGTTAACATGTACTCCCTCTGAA 57.572 37.500 9.56 0.00 0.00 3.02
210 211 6.620877 ATTGTTAACATGTACTCCCTCTGA 57.379 37.500 9.56 0.00 0.00 3.27
211 212 8.964476 ATTATTGTTAACATGTACTCCCTCTG 57.036 34.615 9.56 0.00 0.00 3.35
212 213 9.975218 AAATTATTGTTAACATGTACTCCCTCT 57.025 29.630 9.56 0.00 0.00 3.69
244 245 8.785946 GGATCAAACAAACCATGAAAAATCATT 58.214 29.630 0.00 0.00 0.00 2.57
245 246 7.937942 TGGATCAAACAAACCATGAAAAATCAT 59.062 29.630 0.00 0.00 0.00 2.45
246 247 7.278135 TGGATCAAACAAACCATGAAAAATCA 58.722 30.769 0.00 0.00 0.00 2.57
247 248 7.727331 TGGATCAAACAAACCATGAAAAATC 57.273 32.000 0.00 0.00 0.00 2.17
248 249 9.962809 ATATGGATCAAACAAACCATGAAAAAT 57.037 25.926 0.00 0.00 42.16 1.82
249 250 9.217278 CATATGGATCAAACAAACCATGAAAAA 57.783 29.630 0.00 0.00 42.16 1.94
250 251 8.591940 TCATATGGATCAAACAAACCATGAAAA 58.408 29.630 2.13 0.00 42.16 2.29
251 252 8.131847 TCATATGGATCAAACAAACCATGAAA 57.868 30.769 2.13 0.00 42.16 2.69
252 253 7.715266 TCATATGGATCAAACAAACCATGAA 57.285 32.000 2.13 0.00 42.16 2.57
253 254 7.901283 ATCATATGGATCAAACAAACCATGA 57.099 32.000 2.13 0.00 42.16 3.07
254 255 8.822855 CAAATCATATGGATCAAACAAACCATG 58.177 33.333 2.13 0.00 42.16 3.66
255 256 8.760735 TCAAATCATATGGATCAAACAAACCAT 58.239 29.630 2.13 0.00 44.03 3.55
256 257 8.131847 TCAAATCATATGGATCAAACAAACCA 57.868 30.769 2.13 0.00 34.28 3.67
257 258 9.252962 GATCAAATCATATGGATCAAACAAACC 57.747 33.333 12.28 0.00 36.89 3.27
260 261 9.411189 TCAGATCAAATCATATGGATCAAACAA 57.589 29.630 16.97 0.00 38.84 2.83
261 262 8.983702 TCAGATCAAATCATATGGATCAAACA 57.016 30.769 16.97 0.00 38.84 2.83
267 268 9.458727 GGTTGTATCAGATCAAATCATATGGAT 57.541 33.333 2.13 0.00 38.05 3.41
268 269 8.663167 AGGTTGTATCAGATCAAATCATATGGA 58.337 33.333 2.13 0.00 0.00 3.41
269 270 8.859236 AGGTTGTATCAGATCAAATCATATGG 57.141 34.615 2.13 0.00 0.00 2.74
273 274 9.857656 AATGTAGGTTGTATCAGATCAAATCAT 57.142 29.630 0.00 0.00 0.00 2.45
277 278 9.952030 TTGTAATGTAGGTTGTATCAGATCAAA 57.048 29.630 0.00 0.00 0.00 2.69
279 280 9.546428 CATTGTAATGTAGGTTGTATCAGATCA 57.454 33.333 0.00 0.00 0.00 2.92
300 301 8.246180 CCTTTATGATAGTGCAAAAGACATTGT 58.754 33.333 6.40 0.00 32.80 2.71
301 302 7.703621 CCCTTTATGATAGTGCAAAAGACATTG 59.296 37.037 6.40 0.00 30.44 2.82
302 303 7.615365 TCCCTTTATGATAGTGCAAAAGACATT 59.385 33.333 6.40 0.00 30.44 2.71
303 304 7.118723 TCCCTTTATGATAGTGCAAAAGACAT 58.881 34.615 6.40 3.85 30.44 3.06
304 305 6.480763 TCCCTTTATGATAGTGCAAAAGACA 58.519 36.000 6.40 0.00 30.44 3.41
305 306 6.823689 TCTCCCTTTATGATAGTGCAAAAGAC 59.176 38.462 6.40 0.00 30.44 3.01
306 307 6.957631 TCTCCCTTTATGATAGTGCAAAAGA 58.042 36.000 6.40 0.00 30.44 2.52
307 308 7.050377 TCTCTCCCTTTATGATAGTGCAAAAG 58.950 38.462 0.00 0.00 0.00 2.27
308 309 6.957631 TCTCTCCCTTTATGATAGTGCAAAA 58.042 36.000 0.00 0.00 0.00 2.44
309 310 6.560003 TCTCTCCCTTTATGATAGTGCAAA 57.440 37.500 0.00 0.00 0.00 3.68
310 311 6.560003 TTCTCTCCCTTTATGATAGTGCAA 57.440 37.500 0.00 0.00 0.00 4.08
311 312 6.560003 TTTCTCTCCCTTTATGATAGTGCA 57.440 37.500 0.00 0.00 0.00 4.57
312 313 7.865706 TTTTTCTCTCCCTTTATGATAGTGC 57.134 36.000 0.00 0.00 0.00 4.40
333 334 6.211785 TCCAAGTGGTTTGAGTTAAGGTTTTT 59.788 34.615 0.00 0.00 39.21 1.94
334 335 5.717654 TCCAAGTGGTTTGAGTTAAGGTTTT 59.282 36.000 0.00 0.00 39.21 2.43
335 336 5.265989 TCCAAGTGGTTTGAGTTAAGGTTT 58.734 37.500 0.00 0.00 39.21 3.27
336 337 4.862371 TCCAAGTGGTTTGAGTTAAGGTT 58.138 39.130 0.00 0.00 39.21 3.50
337 338 4.079958 ACTCCAAGTGGTTTGAGTTAAGGT 60.080 41.667 0.00 0.00 39.21 3.50
338 339 4.275936 CACTCCAAGTGGTTTGAGTTAAGG 59.724 45.833 0.00 0.00 42.35 2.69
339 340 5.007724 GTCACTCCAAGTGGTTTGAGTTAAG 59.992 44.000 7.21 0.00 45.94 1.85
340 341 4.879545 GTCACTCCAAGTGGTTTGAGTTAA 59.120 41.667 7.21 0.00 45.94 2.01
341 342 4.163458 AGTCACTCCAAGTGGTTTGAGTTA 59.837 41.667 7.21 0.00 45.94 2.24
342 343 3.054361 AGTCACTCCAAGTGGTTTGAGTT 60.054 43.478 7.21 0.00 45.94 3.01
343 344 2.505819 AGTCACTCCAAGTGGTTTGAGT 59.494 45.455 7.21 1.45 45.94 3.41
344 345 3.134458 GAGTCACTCCAAGTGGTTTGAG 58.866 50.000 7.21 0.00 45.94 3.02
345 346 2.483013 CGAGTCACTCCAAGTGGTTTGA 60.483 50.000 0.00 0.00 45.94 2.69
346 347 1.867233 CGAGTCACTCCAAGTGGTTTG 59.133 52.381 0.00 0.00 45.94 2.93
347 348 1.485066 ACGAGTCACTCCAAGTGGTTT 59.515 47.619 0.00 0.00 45.94 3.27
348 349 1.120530 ACGAGTCACTCCAAGTGGTT 58.879 50.000 0.00 0.00 45.94 3.67
349 350 0.389391 CACGAGTCACTCCAAGTGGT 59.611 55.000 0.00 0.00 45.94 4.16
350 351 0.946221 GCACGAGTCACTCCAAGTGG 60.946 60.000 11.83 0.00 45.94 4.00
352 353 0.753262 AAGCACGAGTCACTCCAAGT 59.247 50.000 0.00 0.00 0.00 3.16
353 354 1.871080 AAAGCACGAGTCACTCCAAG 58.129 50.000 0.00 0.00 0.00 3.61
354 355 2.325583 AAAAGCACGAGTCACTCCAA 57.674 45.000 0.00 0.00 0.00 3.53
355 356 2.866460 GCTAAAAGCACGAGTCACTCCA 60.866 50.000 0.00 0.00 41.89 3.86
356 357 1.727335 GCTAAAAGCACGAGTCACTCC 59.273 52.381 0.00 0.00 41.89 3.85
357 358 1.727335 GGCTAAAAGCACGAGTCACTC 59.273 52.381 0.00 0.00 44.75 3.51
358 359 1.797025 GGCTAAAAGCACGAGTCACT 58.203 50.000 0.78 0.00 44.75 3.41
359 360 0.438830 CGGCTAAAAGCACGAGTCAC 59.561 55.000 0.78 0.00 44.75 3.67
360 361 0.032952 ACGGCTAAAAGCACGAGTCA 59.967 50.000 13.95 0.00 44.75 3.41
361 362 0.438830 CACGGCTAAAAGCACGAGTC 59.561 55.000 13.95 0.00 44.75 3.36
362 363 1.566018 GCACGGCTAAAAGCACGAGT 61.566 55.000 13.95 1.28 44.75 4.18
363 364 1.132640 GCACGGCTAAAAGCACGAG 59.867 57.895 13.95 8.87 44.75 4.18
364 365 1.160946 TTGCACGGCTAAAAGCACGA 61.161 50.000 13.95 0.00 44.75 4.35
365 366 0.109781 ATTGCACGGCTAAAAGCACG 60.110 50.000 0.78 4.97 44.75 5.34
366 367 1.068610 TGATTGCACGGCTAAAAGCAC 60.069 47.619 0.78 0.00 44.75 4.40
367 368 1.242989 TGATTGCACGGCTAAAAGCA 58.757 45.000 0.78 0.00 44.75 3.91
368 369 2.346099 TTGATTGCACGGCTAAAAGC 57.654 45.000 0.00 0.00 41.46 3.51
369 370 3.914364 GTCTTTGATTGCACGGCTAAAAG 59.086 43.478 0.00 0.00 0.00 2.27
370 371 3.305064 GGTCTTTGATTGCACGGCTAAAA 60.305 43.478 0.00 0.00 0.00 1.52
371 372 2.227865 GGTCTTTGATTGCACGGCTAAA 59.772 45.455 0.00 0.00 0.00 1.85
372 373 1.810151 GGTCTTTGATTGCACGGCTAA 59.190 47.619 0.00 0.00 0.00 3.09
373 374 1.271108 TGGTCTTTGATTGCACGGCTA 60.271 47.619 0.00 0.00 0.00 3.93
374 375 0.537143 TGGTCTTTGATTGCACGGCT 60.537 50.000 0.00 0.00 0.00 5.52
375 376 0.527565 ATGGTCTTTGATTGCACGGC 59.472 50.000 0.00 0.00 0.00 5.68
376 377 2.415893 GGAATGGTCTTTGATTGCACGG 60.416 50.000 0.00 0.00 0.00 4.94
377 378 2.489329 AGGAATGGTCTTTGATTGCACG 59.511 45.455 0.00 0.00 0.00 5.34
378 379 5.221126 GGATAGGAATGGTCTTTGATTGCAC 60.221 44.000 0.00 0.00 0.00 4.57
379 380 4.889409 GGATAGGAATGGTCTTTGATTGCA 59.111 41.667 0.00 0.00 0.00 4.08
380 381 4.279420 GGGATAGGAATGGTCTTTGATTGC 59.721 45.833 0.00 0.00 0.00 3.56
381 382 4.516698 CGGGATAGGAATGGTCTTTGATTG 59.483 45.833 0.00 0.00 0.00 2.67
382 383 4.166144 ACGGGATAGGAATGGTCTTTGATT 59.834 41.667 0.00 0.00 0.00 2.57
383 384 3.716872 ACGGGATAGGAATGGTCTTTGAT 59.283 43.478 0.00 0.00 0.00 2.57
384 385 3.112263 ACGGGATAGGAATGGTCTTTGA 58.888 45.455 0.00 0.00 0.00 2.69
385 386 3.206150 CACGGGATAGGAATGGTCTTTG 58.794 50.000 0.00 0.00 0.00 2.77
386 387 2.844348 ACACGGGATAGGAATGGTCTTT 59.156 45.455 0.00 0.00 0.00 2.52
387 388 2.170607 CACACGGGATAGGAATGGTCTT 59.829 50.000 0.00 0.00 0.00 3.01
388 389 1.762957 CACACGGGATAGGAATGGTCT 59.237 52.381 0.00 0.00 0.00 3.85
389 390 1.760613 TCACACGGGATAGGAATGGTC 59.239 52.381 0.00 0.00 0.00 4.02
390 391 1.874129 TCACACGGGATAGGAATGGT 58.126 50.000 0.00 0.00 0.00 3.55
391 392 3.403038 GAATCACACGGGATAGGAATGG 58.597 50.000 0.00 0.00 0.00 3.16
392 393 3.181455 TGGAATCACACGGGATAGGAATG 60.181 47.826 0.00 0.00 0.00 2.67
393 394 3.045634 TGGAATCACACGGGATAGGAAT 58.954 45.455 0.00 0.00 0.00 3.01
394 395 2.473070 TGGAATCACACGGGATAGGAA 58.527 47.619 0.00 0.00 0.00 3.36
395 396 2.168458 TGGAATCACACGGGATAGGA 57.832 50.000 0.00 0.00 0.00 2.94
396 397 3.275617 TTTGGAATCACACGGGATAGG 57.724 47.619 0.00 0.00 0.00 2.57
397 398 4.199310 ACATTTGGAATCACACGGGATAG 58.801 43.478 0.00 0.00 0.00 2.08
398 399 4.196193 GACATTTGGAATCACACGGGATA 58.804 43.478 0.00 0.00 0.00 2.59
399 400 3.016736 GACATTTGGAATCACACGGGAT 58.983 45.455 0.00 0.00 0.00 3.85
400 401 2.224646 TGACATTTGGAATCACACGGGA 60.225 45.455 0.00 0.00 0.00 5.14
401 402 2.095263 GTGACATTTGGAATCACACGGG 60.095 50.000 0.00 0.00 41.94 5.28
402 403 2.551887 TGTGACATTTGGAATCACACGG 59.448 45.455 2.28 0.00 45.89 4.94
403 404 3.894782 TGTGACATTTGGAATCACACG 57.105 42.857 2.28 0.00 45.89 4.49
417 418 2.346766 AGGAGTGCAATGTTGTGACA 57.653 45.000 0.00 0.00 40.71 3.58
418 419 3.753272 ACATAGGAGTGCAATGTTGTGAC 59.247 43.478 0.00 0.00 29.68 3.67
419 420 4.019792 ACATAGGAGTGCAATGTTGTGA 57.980 40.909 0.00 0.00 29.68 3.58
420 421 4.771590 AACATAGGAGTGCAATGTTGTG 57.228 40.909 11.86 2.10 41.14 3.33
421 422 5.072741 AGAAACATAGGAGTGCAATGTTGT 58.927 37.500 13.07 5.44 41.67 3.32
422 423 5.633830 AGAAACATAGGAGTGCAATGTTG 57.366 39.130 13.07 0.00 41.67 3.33
423 424 5.769662 TCAAGAAACATAGGAGTGCAATGTT 59.230 36.000 7.70 7.70 43.74 2.71
424 425 5.316167 TCAAGAAACATAGGAGTGCAATGT 58.684 37.500 0.00 0.00 35.40 2.71
425 426 5.885230 TCAAGAAACATAGGAGTGCAATG 57.115 39.130 0.00 0.00 0.00 2.82
426 427 6.899393 TTTCAAGAAACATAGGAGTGCAAT 57.101 33.333 0.00 0.00 0.00 3.56
427 428 6.096141 TGTTTTCAAGAAACATAGGAGTGCAA 59.904 34.615 0.00 0.00 35.45 4.08
428 429 5.592282 TGTTTTCAAGAAACATAGGAGTGCA 59.408 36.000 0.55 0.00 35.45 4.57
429 430 6.072112 TGTTTTCAAGAAACATAGGAGTGC 57.928 37.500 0.55 0.00 35.45 4.40
430 431 7.592533 CACATGTTTTCAAGAAACATAGGAGTG 59.407 37.037 14.57 13.95 45.87 3.51
431 432 7.255590 CCACATGTTTTCAAGAAACATAGGAGT 60.256 37.037 19.74 11.52 45.87 3.85
432 433 7.040478 TCCACATGTTTTCAAGAAACATAGGAG 60.040 37.037 21.43 12.29 45.87 3.69
433 434 6.775142 TCCACATGTTTTCAAGAAACATAGGA 59.225 34.615 21.43 21.43 45.87 2.94
434 435 6.863126 GTCCACATGTTTTCAAGAAACATAGG 59.137 38.462 14.57 17.18 45.87 2.57
435 436 6.863126 GGTCCACATGTTTTCAAGAAACATAG 59.137 38.462 14.57 11.94 45.87 2.23
436 437 6.322456 TGGTCCACATGTTTTCAAGAAACATA 59.678 34.615 14.57 0.30 45.87 2.29
438 439 4.464244 TGGTCCACATGTTTTCAAGAAACA 59.536 37.500 0.00 6.77 43.33 2.83
439 440 5.004922 TGGTCCACATGTTTTCAAGAAAC 57.995 39.130 0.00 0.00 0.00 2.78
440 441 5.867903 ATGGTCCACATGTTTTCAAGAAA 57.132 34.783 0.00 0.00 38.70 2.52
441 442 7.537596 AATATGGTCCACATGTTTTCAAGAA 57.462 32.000 0.00 0.00 37.60 2.52
442 443 7.537596 AAATATGGTCCACATGTTTTCAAGA 57.462 32.000 0.00 0.00 45.13 3.02
443 444 6.527722 CGAAATATGGTCCACATGTTTTCAAG 59.472 38.462 13.09 0.00 46.66 3.02
444 445 6.385843 CGAAATATGGTCCACATGTTTTCAA 58.614 36.000 13.09 0.00 46.66 2.69
445 446 5.105957 CCGAAATATGGTCCACATGTTTTCA 60.106 40.000 13.09 4.08 46.66 2.69
446 447 5.124776 TCCGAAATATGGTCCACATGTTTTC 59.875 40.000 0.00 0.30 46.66 2.29
447 448 5.013547 TCCGAAATATGGTCCACATGTTTT 58.986 37.500 0.00 0.00 46.66 2.43
449 450 4.229304 TCCGAAATATGGTCCACATGTT 57.771 40.909 0.00 0.00 41.93 2.71
450 451 3.924114 TCCGAAATATGGTCCACATGT 57.076 42.857 0.00 0.00 40.82 3.21
451 452 3.058016 GCATCCGAAATATGGTCCACATG 60.058 47.826 0.00 0.00 40.82 3.21
452 453 3.149196 GCATCCGAAATATGGTCCACAT 58.851 45.455 0.00 0.00 43.68 3.21
453 454 2.092699 TGCATCCGAAATATGGTCCACA 60.093 45.455 0.00 0.00 0.00 4.17
454 455 2.571212 TGCATCCGAAATATGGTCCAC 58.429 47.619 0.00 0.00 0.00 4.02
455 456 3.289407 TTGCATCCGAAATATGGTCCA 57.711 42.857 0.00 0.00 0.00 4.02
456 457 4.647424 TTTTGCATCCGAAATATGGTCC 57.353 40.909 0.00 0.00 0.00 4.46
457 458 6.756074 TCAAATTTTGCATCCGAAATATGGTC 59.244 34.615 4.19 0.00 34.64 4.02
458 459 6.638610 TCAAATTTTGCATCCGAAATATGGT 58.361 32.000 4.19 0.00 34.64 3.55
459 460 7.536895 TTCAAATTTTGCATCCGAAATATGG 57.463 32.000 4.19 0.00 34.64 2.74
460 461 7.121272 GCTTCAAATTTTGCATCCGAAATATG 58.879 34.615 4.19 0.00 34.64 1.78
461 462 6.258507 GGCTTCAAATTTTGCATCCGAAATAT 59.741 34.615 4.19 0.00 34.64 1.28
462 463 5.580297 GGCTTCAAATTTTGCATCCGAAATA 59.420 36.000 4.19 0.00 34.64 1.40
463 464 4.392754 GGCTTCAAATTTTGCATCCGAAAT 59.607 37.500 4.19 0.00 36.77 2.17
464 465 3.745458 GGCTTCAAATTTTGCATCCGAAA 59.255 39.130 4.19 0.00 0.00 3.46
465 466 3.006752 AGGCTTCAAATTTTGCATCCGAA 59.993 39.130 4.19 0.00 0.00 4.30
466 467 2.562298 AGGCTTCAAATTTTGCATCCGA 59.438 40.909 4.19 0.00 0.00 4.55
467 468 2.963432 AGGCTTCAAATTTTGCATCCG 58.037 42.857 4.19 0.00 0.00 4.18
468 469 5.126061 TCTCTAGGCTTCAAATTTTGCATCC 59.874 40.000 4.19 0.00 0.00 3.51
469 470 6.094603 TCTCTCTAGGCTTCAAATTTTGCATC 59.905 38.462 4.19 0.00 0.00 3.91
470 471 5.948162 TCTCTCTAGGCTTCAAATTTTGCAT 59.052 36.000 4.19 5.36 0.00 3.96
471 472 5.316167 TCTCTCTAGGCTTCAAATTTTGCA 58.684 37.500 4.19 0.00 0.00 4.08
472 473 5.886960 TCTCTCTAGGCTTCAAATTTTGC 57.113 39.130 4.19 0.00 0.00 3.68
473 474 7.324616 CGTTTTCTCTCTAGGCTTCAAATTTTG 59.675 37.037 2.59 2.59 0.00 2.44
474 475 7.013369 ACGTTTTCTCTCTAGGCTTCAAATTTT 59.987 33.333 0.00 0.00 0.00 1.82
475 476 6.486993 ACGTTTTCTCTCTAGGCTTCAAATTT 59.513 34.615 0.00 0.00 0.00 1.82
476 477 5.998363 ACGTTTTCTCTCTAGGCTTCAAATT 59.002 36.000 0.00 0.00 0.00 1.82
477 478 5.409826 CACGTTTTCTCTCTAGGCTTCAAAT 59.590 40.000 0.00 0.00 0.00 2.32
478 479 4.750098 CACGTTTTCTCTCTAGGCTTCAAA 59.250 41.667 0.00 0.00 0.00 2.69
479 480 4.202223 ACACGTTTTCTCTCTAGGCTTCAA 60.202 41.667 0.00 0.00 0.00 2.69
480 481 3.321111 ACACGTTTTCTCTCTAGGCTTCA 59.679 43.478 0.00 0.00 0.00 3.02
481 482 3.675698 CACACGTTTTCTCTCTAGGCTTC 59.324 47.826 0.00 0.00 0.00 3.86
482 483 3.321111 TCACACGTTTTCTCTCTAGGCTT 59.679 43.478 0.00 0.00 0.00 4.35
483 484 2.891580 TCACACGTTTTCTCTCTAGGCT 59.108 45.455 0.00 0.00 0.00 4.58
484 485 3.299340 TCACACGTTTTCTCTCTAGGC 57.701 47.619 0.00 0.00 0.00 3.93
485 486 4.865365 GGAATCACACGTTTTCTCTCTAGG 59.135 45.833 0.00 0.00 0.00 3.02
486 487 4.559251 CGGAATCACACGTTTTCTCTCTAG 59.441 45.833 0.00 0.00 0.00 2.43
487 488 4.216902 TCGGAATCACACGTTTTCTCTCTA 59.783 41.667 0.00 0.00 0.00 2.43
488 489 3.005472 TCGGAATCACACGTTTTCTCTCT 59.995 43.478 0.00 0.00 0.00 3.10
489 490 3.314553 TCGGAATCACACGTTTTCTCTC 58.685 45.455 0.00 0.00 0.00 3.20
490 491 3.380479 TCGGAATCACACGTTTTCTCT 57.620 42.857 0.00 0.00 0.00 3.10
491 492 3.432252 ACATCGGAATCACACGTTTTCTC 59.568 43.478 0.00 0.00 0.00 2.87
492 493 3.399330 ACATCGGAATCACACGTTTTCT 58.601 40.909 0.00 0.00 0.00 2.52
493 494 3.185594 TGACATCGGAATCACACGTTTTC 59.814 43.478 0.00 0.00 0.00 2.29
508 509 1.078709 AAGCCAACGTGATGACATCG 58.921 50.000 10.79 3.12 0.00 3.84
525 526 9.904647 CAAAATTCATGTCAAGTACACAAAAAG 57.095 29.630 0.00 0.00 42.09 2.27
558 559 3.405831 CATGTCTTGCCTCTCTTTGACA 58.594 45.455 0.00 0.00 38.52 3.58
604 606 6.321181 TCTCATTGGTTTTAGAAACAGCAACT 59.679 34.615 5.97 0.00 33.19 3.16
608 610 8.593492 AATTTCTCATTGGTTTTAGAAACAGC 57.407 30.769 5.97 0.00 39.89 4.40
611 616 9.541143 TTGGAATTTCTCATTGGTTTTAGAAAC 57.459 29.630 0.00 0.00 39.89 2.78
622 627 9.624697 TTATTTTCGACTTGGAATTTCTCATTG 57.375 29.630 0.00 0.00 0.00 2.82
624 629 9.014297 ACTTATTTTCGACTTGGAATTTCTCAT 57.986 29.630 0.00 0.00 0.00 2.90
659 665 4.753107 TGTGAAACTTATTCGACTTCACCC 59.247 41.667 9.93 0.00 43.29 4.61
675 681 5.343249 ACTTGATCTTTTGCAGTGTGAAAC 58.657 37.500 0.00 0.00 37.35 2.78
681 687 6.671190 TCATGTAACTTGATCTTTTGCAGTG 58.329 36.000 0.00 0.00 0.00 3.66
682 688 6.882610 TCATGTAACTTGATCTTTTGCAGT 57.117 33.333 0.00 0.00 0.00 4.40
683 689 8.578308 TTTTCATGTAACTTGATCTTTTGCAG 57.422 30.769 0.00 0.00 0.00 4.41
684 690 8.939201 TTTTTCATGTAACTTGATCTTTTGCA 57.061 26.923 0.00 0.00 0.00 4.08
722 754 5.359576 ACATTTGTGCTCCTCAGTTAAAACA 59.640 36.000 0.00 0.00 0.00 2.83
723 755 5.687285 CACATTTGTGCTCCTCAGTTAAAAC 59.313 40.000 0.00 0.00 39.39 2.43
740 793 2.923605 GCTGCTAGTGGTTGCACATTTG 60.924 50.000 0.00 0.00 35.20 2.32
741 794 1.270550 GCTGCTAGTGGTTGCACATTT 59.729 47.619 0.00 0.00 35.20 2.32
755 808 6.128035 ACGTTCATTCAATTAATGTGCTGCTA 60.128 34.615 0.00 0.00 44.58 3.49
756 809 5.097529 CGTTCATTCAATTAATGTGCTGCT 58.902 37.500 0.00 0.00 44.58 4.24
757 810 4.858692 ACGTTCATTCAATTAATGTGCTGC 59.141 37.500 0.00 0.00 44.58 5.25
758 811 5.858049 ACACGTTCATTCAATTAATGTGCTG 59.142 36.000 14.18 0.00 44.58 4.41
759 812 6.012658 ACACGTTCATTCAATTAATGTGCT 57.987 33.333 14.18 2.68 44.58 4.40
760 813 6.689178 AACACGTTCATTCAATTAATGTGC 57.311 33.333 14.18 0.00 44.58 4.57
761 814 8.839914 CAGTAACACGTTCATTCAATTAATGTG 58.160 33.333 13.07 13.07 44.58 3.21
762 815 8.564574 ACAGTAACACGTTCATTCAATTAATGT 58.435 29.630 0.00 0.00 44.58 2.71
763 816 8.948853 ACAGTAACACGTTCATTCAATTAATG 57.051 30.769 0.00 0.00 45.47 1.90
766 819 8.489559 GTGTACAGTAACACGTTCATTCAATTA 58.510 33.333 0.00 0.00 40.31 1.40
779 832 6.018507 AGTGGAAAAATCGTGTACAGTAACAC 60.019 38.462 0.00 0.00 45.10 3.32
780 833 6.050432 AGTGGAAAAATCGTGTACAGTAACA 58.950 36.000 0.00 0.00 0.00 2.41
781 834 6.535274 AGTGGAAAAATCGTGTACAGTAAC 57.465 37.500 0.00 0.00 0.00 2.50
783 836 7.086376 GTCTAGTGGAAAAATCGTGTACAGTA 58.914 38.462 0.00 0.00 0.00 2.74
784 837 5.924825 GTCTAGTGGAAAAATCGTGTACAGT 59.075 40.000 0.00 0.00 0.00 3.55
785 838 5.060569 CGTCTAGTGGAAAAATCGTGTACAG 59.939 44.000 0.00 0.00 0.00 2.74
786 839 4.919168 CGTCTAGTGGAAAAATCGTGTACA 59.081 41.667 0.00 0.00 0.00 2.90
787 840 5.156355 TCGTCTAGTGGAAAAATCGTGTAC 58.844 41.667 0.00 0.00 0.00 2.90
788 841 5.048504 ACTCGTCTAGTGGAAAAATCGTGTA 60.049 40.000 0.00 0.00 36.93 2.90
789 842 4.235360 CTCGTCTAGTGGAAAAATCGTGT 58.765 43.478 0.00 0.00 0.00 4.49
793 846 6.157211 TCTTGACTCGTCTAGTGGAAAAATC 58.843 40.000 8.05 0.00 39.07 2.17
898 952 1.911766 GAGTGTGGGAGGGTCCGAA 60.912 63.158 0.00 0.00 37.43 4.30
899 953 2.283676 GAGTGTGGGAGGGTCCGA 60.284 66.667 0.00 0.00 37.43 4.55
904 958 3.011517 CAGGGGAGTGTGGGAGGG 61.012 72.222 0.00 0.00 0.00 4.30
917 971 4.436998 GTGCCGACGAGGACAGGG 62.437 72.222 0.00 0.00 45.00 4.45
918 972 2.890847 GATGTGCCGACGAGGACAGG 62.891 65.000 13.89 0.00 45.00 4.00
920 974 2.571757 GATGTGCCGACGAGGACA 59.428 61.111 11.66 11.66 45.00 4.02
921 975 2.537792 TTCGATGTGCCGACGAGGAC 62.538 60.000 0.00 0.00 45.00 3.85
922 976 2.266376 CTTCGATGTGCCGACGAGGA 62.266 60.000 0.00 0.00 45.00 3.71
926 985 3.554692 GCCTTCGATGTGCCGACG 61.555 66.667 0.00 0.00 38.39 5.12
933 992 3.118454 CGCCGTTGCCTTCGATGT 61.118 61.111 0.00 0.00 0.00 3.06
1001 1060 4.988598 AGCAAGTGACGGTGGCGG 62.989 66.667 0.00 0.00 0.00 6.13
1030 1089 2.511373 GCATGGTGACGATCGGCA 60.511 61.111 22.34 22.34 0.00 5.69
1193 1258 0.179056 CCTTGGTGTCGTTGGTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
1432 1497 1.737029 CGATCTGACTCATGCCGTTGT 60.737 52.381 0.00 0.00 0.00 3.32
1445 1510 2.748647 TCGACGGCCACGATCTGA 60.749 61.111 16.28 2.04 44.60 3.27
1551 1616 3.000819 CCAGTACCCGGCTGTGGA 61.001 66.667 0.00 0.00 32.41 4.02
1721 1786 1.227556 GACGTGGCACCACAAGAGT 60.228 57.895 19.38 8.97 46.47 3.24
1729 1794 1.668151 GAGAGGTTGACGTGGCACC 60.668 63.158 12.86 0.00 0.00 5.01
2258 2358 1.522355 CCGGCTCATGCTCGTGATT 60.522 57.895 0.00 0.00 39.59 2.57
2285 2385 4.254709 AGCTGCACCAGGTTGCGA 62.255 61.111 1.02 0.23 46.20 5.10
3056 3585 1.736645 GGTGGTGACATCGGACGTG 60.737 63.158 0.00 0.00 46.14 4.49
3065 3594 4.595538 GTCGTGGCGGTGGTGACA 62.596 66.667 0.00 0.00 38.70 3.58
3137 3666 0.523072 ACTTGCGGCTGTATTTGCTG 59.477 50.000 0.00 0.00 39.61 4.41
3315 3853 7.046652 ACATACATTCTTGAGTCATCTGGAAG 58.953 38.462 0.00 0.00 0.00 3.46
3318 3856 8.899427 AATACATACATTCTTGAGTCATCTGG 57.101 34.615 0.00 0.00 0.00 3.86
3349 4871 4.427312 ACTTCAGTTTCTTGCAAAGCTTG 58.573 39.130 0.00 0.00 45.70 4.01
3352 4874 5.631096 GGAATACTTCAGTTTCTTGCAAAGC 59.369 40.000 0.00 0.00 45.70 3.51
3387 4909 6.452494 TTTACGTGAAAAAGAAATCCCACA 57.548 33.333 0.00 0.00 0.00 4.17
3461 4983 1.246056 ACTGGCGTCGGCTGTAACTA 61.246 55.000 26.07 1.16 38.35 2.24
3477 4999 7.092079 TGAAAGGTCAATAATTCATGCAACTG 58.908 34.615 0.00 0.00 0.00 3.16
3643 5166 2.625737 CTGGACATGAAGCTCAACGAT 58.374 47.619 0.00 0.00 0.00 3.73
3929 5487 7.313646 AGGATGATTAGTAATGTTCGATACCG 58.686 38.462 0.00 0.00 37.07 4.02
4012 5570 1.613836 CATATGGAAAGGCTGGGAGC 58.386 55.000 0.00 0.00 41.46 4.70
4018 5576 2.497273 GTTTGGTGCATATGGAAAGGCT 59.503 45.455 4.56 0.00 0.00 4.58
4089 5647 7.505585 TCCACAATCTTCCTGTAGTTGAAAAAT 59.494 33.333 0.00 0.00 0.00 1.82
4103 5661 3.190874 GTCGATGTCTCCACAATCTTCC 58.809 50.000 0.00 0.00 35.64 3.46
4221 5804 0.250124 ACGACGAATCTGGTTTGCCA 60.250 50.000 0.00 0.00 43.73 4.92
4223 5806 1.136336 GTCACGACGAATCTGGTTTGC 60.136 52.381 0.00 0.00 0.00 3.68
4240 5824 2.333688 TTTGACGTTGGTGATGGTCA 57.666 45.000 0.00 0.00 37.61 4.02
4253 5837 4.408993 TCACTCATGCTTCATTTTGACG 57.591 40.909 0.00 0.00 0.00 4.35
4261 5845 3.369157 CCTGTCAGATCACTCATGCTTCA 60.369 47.826 0.00 0.00 0.00 3.02
4268 5852 3.006217 CACAACTCCTGTCAGATCACTCA 59.994 47.826 0.00 0.00 35.47 3.41
4275 5859 2.101415 CACAGACACAACTCCTGTCAGA 59.899 50.000 0.00 0.00 40.56 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.