Multiple sequence alignment - TraesCS5B01G497400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G497400 chr5B 100.000 3329 0 0 1 3329 664418472 664415144 0.000000e+00 6148.0
1 TraesCS5B01G497400 chr5B 97.965 1818 30 1 719 2536 664476173 664474363 0.000000e+00 3145.0
2 TraesCS5B01G497400 chr5B 90.289 1071 67 14 1383 2453 664503803 664502770 0.000000e+00 1367.0
3 TraesCS5B01G497400 chr5B 97.892 332 7 0 2998 3329 664468195 664467864 2.880000e-160 575.0
4 TraesCS5B01G497400 chr5B 97.854 233 4 1 2693 2924 664474367 664474135 5.170000e-108 401.0
5 TraesCS5B01G497400 chr5B 84.483 406 54 8 867 1271 664504630 664504233 3.110000e-105 392.0
6 TraesCS5B01G497400 chr5B 93.023 172 11 1 2527 2697 387365115 387364944 1.980000e-62 250.0
7 TraesCS5B01G497400 chr5B 89.143 175 9 4 538 711 664506535 664506370 3.370000e-50 209.0
8 TraesCS5B01G497400 chr5B 100.000 32 0 0 679 710 664477523 664477492 3.590000e-05 60.2
9 TraesCS5B01G497400 chr5A 90.917 1156 77 12 1383 2531 655189357 655188223 0.000000e+00 1528.0
10 TraesCS5B01G497400 chr5A 90.830 1156 78 12 1383 2531 655225519 655224385 0.000000e+00 1522.0
11 TraesCS5B01G497400 chr5A 92.664 777 50 5 1379 2148 654851793 654851017 0.000000e+00 1112.0
12 TraesCS5B01G497400 chr5A 93.323 644 30 6 2696 3329 655188220 655187580 0.000000e+00 939.0
13 TraesCS5B01G497400 chr5A 93.323 644 30 6 2696 3329 655224382 655223742 0.000000e+00 939.0
14 TraesCS5B01G497400 chr5A 83.821 581 53 23 2689 3247 654850655 654850094 6.370000e-142 514.0
15 TraesCS5B01G497400 chr5A 89.076 357 29 4 2184 2535 654851019 654850668 5.100000e-118 435.0
16 TraesCS5B01G497400 chr5A 90.323 217 14 4 2694 2910 654849913 654849704 9.100000e-71 278.0
17 TraesCS5B01G497400 chr5A 91.279 172 12 2 3154 3324 654848798 654848629 7.180000e-57 231.0
18 TraesCS5B01G497400 chr5A 83.784 259 25 9 285 530 253612603 253612349 2.580000e-56 230.0
19 TraesCS5B01G497400 chr5A 96.610 59 2 0 538 596 655192300 655192242 7.600000e-17 99.0
20 TraesCS5B01G497400 chr5A 96.610 59 2 0 538 596 655226802 655226744 7.600000e-17 99.0
21 TraesCS5B01G497400 chr5A 88.235 51 5 1 429 479 459772896 459772945 3.590000e-05 60.2
22 TraesCS5B01G497400 chr5A 100.000 28 0 0 2504 2531 654849942 654849915 6.000000e-03 52.8
23 TraesCS5B01G497400 chr3D 88.992 1081 84 23 1388 2457 2968677 2967621 0.000000e+00 1304.0
24 TraesCS5B01G497400 chr3D 88.938 226 23 2 5 228 29810449 29810224 9.100000e-71 278.0
25 TraesCS5B01G497400 chr3D 85.455 275 28 6 1001 1265 2969414 2969142 3.270000e-70 276.0
26 TraesCS5B01G497400 chr3D 100.000 32 0 0 2496 2527 2967615 2967584 3.590000e-05 60.2
27 TraesCS5B01G497400 chr3B 87.974 1081 94 27 1388 2457 2878866 2879921 0.000000e+00 1243.0
28 TraesCS5B01G497400 chr3B 84.429 289 31 11 1033 1310 2878167 2878452 4.230000e-69 272.0
29 TraesCS5B01G497400 chr3B 89.855 69 6 1 2695 2762 2879965 2880033 1.650000e-13 87.9
30 TraesCS5B01G497400 chr7D 86.957 1150 93 28 1398 2531 401550939 401549831 0.000000e+00 1240.0
31 TraesCS5B01G497400 chr7D 77.582 397 60 18 996 1375 401552030 401551646 2.600000e-51 213.0
32 TraesCS5B01G497400 chr7A 86.099 1151 97 37 1415 2531 459210149 459209028 0.000000e+00 1181.0
33 TraesCS5B01G497400 chr7A 87.603 242 10 5 293 516 40543652 40543413 2.550000e-66 263.0
34 TraesCS5B01G497400 chr7A 93.064 173 11 1 2531 2702 13105430 13105258 5.510000e-63 252.0
35 TraesCS5B01G497400 chr7B 85.653 1164 118 28 1395 2536 411060010 411058874 0.000000e+00 1179.0
36 TraesCS5B01G497400 chr5D 90.732 669 35 12 1785 2453 527841860 527841219 0.000000e+00 867.0
37 TraesCS5B01G497400 chr5D 83.902 410 55 8 864 1271 527843042 527842642 6.740000e-102 381.0
38 TraesCS5B01G497400 chr5D 86.992 246 25 6 8 251 371278977 371278737 1.520000e-68 270.0
39 TraesCS5B01G497400 chr5D 86.400 250 28 5 6 253 452221669 452221424 5.470000e-68 268.0
40 TraesCS5B01G497400 chr5D 86.235 247 30 3 6 251 465701975 465702218 7.080000e-67 265.0
41 TraesCS5B01G497400 chr5D 84.314 255 21 5 284 520 22373596 22373849 7.180000e-57 231.0
42 TraesCS5B01G497400 chr5D 81.481 189 19 9 538 711 527843445 527843258 1.250000e-29 141.0
43 TraesCS5B01G497400 chr5D 94.000 50 3 0 246 295 527844340 527844291 3.560000e-10 76.8
44 TraesCS5B01G497400 chr2B 89.381 226 21 2 6 231 790010550 790010328 7.030000e-72 281.0
45 TraesCS5B01G497400 chr2B 93.567 171 10 1 2527 2696 52628397 52628567 1.530000e-63 254.0
46 TraesCS5B01G497400 chr2B 93.452 168 10 1 2529 2695 161144172 161144005 7.130000e-62 248.0
47 TraesCS5B01G497400 chr2B 92.982 171 11 1 2532 2701 425356468 425356298 7.130000e-62 248.0
48 TraesCS5B01G497400 chr1B 88.987 227 24 1 6 231 30713537 30713311 2.530000e-71 279.0
49 TraesCS5B01G497400 chr1B 85.507 207 26 4 290 494 660112712 660112916 2.600000e-51 213.0
50 TraesCS5B01G497400 chr6B 88.889 225 23 2 296 519 96644520 96644297 3.270000e-70 276.0
51 TraesCS5B01G497400 chr6B 91.713 181 12 3 2531 2709 260544926 260545105 7.130000e-62 248.0
52 TraesCS5B01G497400 chr4B 88.053 226 25 1 6 231 73615454 73615677 1.970000e-67 267.0
53 TraesCS5B01G497400 chr4B 93.491 169 10 1 2530 2697 186605577 186605409 1.980000e-62 250.0
54 TraesCS5B01G497400 chr2A 86.475 244 30 2 6 249 44796970 44797210 7.080000e-67 265.0
55 TraesCS5B01G497400 chr3A 84.848 264 33 6 6 267 60293990 60293732 3.290000e-65 259.0
56 TraesCS5B01G497400 chr3A 90.957 188 15 2 2528 2713 222451038 222450851 5.510000e-63 252.0
57 TraesCS5B01G497400 chr3A 93.491 169 10 1 2529 2696 694520773 694520941 1.980000e-62 250.0
58 TraesCS5B01G497400 chr1D 86.420 243 13 9 293 516 29961240 29961481 7.130000e-62 248.0
59 TraesCS5B01G497400 chr1D 86.036 222 30 1 298 519 420084143 420083923 1.540000e-58 237.0
60 TraesCS5B01G497400 chr1A 85.246 244 18 5 293 519 90725928 90725686 5.550000e-58 235.0
61 TraesCS5B01G497400 chr2D 95.070 142 7 0 292 433 645152723 645152864 1.200000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G497400 chr5B 664415144 664418472 3328 True 6148.000000 6148 100.000000 1 3329 1 chr5B.!!$R2 3328
1 TraesCS5B01G497400 chr5B 664474135 664477523 3388 True 1202.066667 3145 98.606333 679 2924 3 chr5B.!!$R4 2245
2 TraesCS5B01G497400 chr5B 664502770 664506535 3765 True 656.000000 1367 87.971667 538 2453 3 chr5B.!!$R5 1915
3 TraesCS5B01G497400 chr5A 655187580 655192300 4720 True 855.333333 1528 93.616667 538 3329 3 chr5A.!!$R3 2791
4 TraesCS5B01G497400 chr5A 655223742 655226802 3060 True 853.333333 1522 93.587667 538 3329 3 chr5A.!!$R4 2791
5 TraesCS5B01G497400 chr5A 654848629 654851793 3164 True 437.133333 1112 91.193833 1379 3324 6 chr5A.!!$R2 1945
6 TraesCS5B01G497400 chr3D 2967584 2969414 1830 True 546.733333 1304 91.482333 1001 2527 3 chr3D.!!$R2 1526
7 TraesCS5B01G497400 chr3B 2878167 2880033 1866 False 534.300000 1243 87.419333 1033 2762 3 chr3B.!!$F1 1729
8 TraesCS5B01G497400 chr7D 401549831 401552030 2199 True 726.500000 1240 82.269500 996 2531 2 chr7D.!!$R1 1535
9 TraesCS5B01G497400 chr7A 459209028 459210149 1121 True 1181.000000 1181 86.099000 1415 2531 1 chr7A.!!$R3 1116
10 TraesCS5B01G497400 chr7B 411058874 411060010 1136 True 1179.000000 1179 85.653000 1395 2536 1 chr7B.!!$R1 1141
11 TraesCS5B01G497400 chr5D 527841219 527844340 3121 True 366.450000 867 87.528750 246 2453 4 chr5D.!!$R3 2207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.034337 GTTCTGGTGCGTTGGTCCTA 59.966 55.000 0.0 0.0 0.00 2.94 F
108 109 0.035458 GGGAGAGGCGATAATGGTGG 59.965 60.000 0.0 0.0 0.00 4.61 F
313 314 0.104120 GCCCTGTTTGTTTCGGCTTT 59.896 50.000 0.0 0.0 36.65 3.51 F
394 395 1.003003 TGCTTTTGGGGCTTTTATGGC 59.997 47.619 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 6905 9.811995 CACAAGTCATAATGGAATTGAATTCAT 57.188 29.630 18.55 8.24 43.47 2.57 R
2197 6988 1.453379 CCTCCCTCAGCTTGGCATG 60.453 63.158 0.00 0.00 0.00 4.06 R
2311 7102 0.253327 AGCTAGTTAGTGCCCTTGCC 59.747 55.000 0.00 0.00 36.33 4.52 R
2533 7358 4.860022 ACAAGTATTTGGAATGGAGGGAG 58.140 43.478 2.81 0.00 38.66 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.253955 GCGATTGTTCTGGTGCGT 58.746 55.556 0.00 0.00 0.00 5.24
18 19 1.574428 GCGATTGTTCTGGTGCGTT 59.426 52.632 0.00 0.00 0.00 4.84
19 20 0.725784 GCGATTGTTCTGGTGCGTTG 60.726 55.000 0.00 0.00 0.00 4.10
20 21 0.110238 CGATTGTTCTGGTGCGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
21 22 0.951558 GATTGTTCTGGTGCGTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
22 23 0.951558 ATTGTTCTGGTGCGTTGGTC 59.048 50.000 0.00 0.00 0.00 4.02
23 24 1.098712 TTGTTCTGGTGCGTTGGTCC 61.099 55.000 0.00 0.00 0.00 4.46
24 25 1.227853 GTTCTGGTGCGTTGGTCCT 60.228 57.895 0.00 0.00 0.00 3.85
25 26 0.034337 GTTCTGGTGCGTTGGTCCTA 59.966 55.000 0.00 0.00 0.00 2.94
26 27 0.981183 TTCTGGTGCGTTGGTCCTAT 59.019 50.000 0.00 0.00 0.00 2.57
27 28 0.249120 TCTGGTGCGTTGGTCCTATG 59.751 55.000 0.00 0.00 0.00 2.23
28 29 0.744414 CTGGTGCGTTGGTCCTATGG 60.744 60.000 0.00 0.00 0.00 2.74
29 30 1.451387 GGTGCGTTGGTCCTATGGG 60.451 63.158 0.00 0.00 0.00 4.00
30 31 1.451387 GTGCGTTGGTCCTATGGGG 60.451 63.158 0.00 0.00 0.00 4.96
31 32 2.516225 GCGTTGGTCCTATGGGGC 60.516 66.667 0.00 0.00 36.26 5.80
38 39 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
39 40 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
40 41 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
41 42 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
42 43 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
43 44 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
44 45 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
45 46 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
46 47 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
47 48 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
48 49 0.669625 GGCCTTAGCACGACGACTTT 60.670 55.000 0.00 0.00 42.56 2.66
49 50 0.714439 GCCTTAGCACGACGACTTTC 59.286 55.000 0.00 0.00 39.53 2.62
50 51 1.347320 CCTTAGCACGACGACTTTCC 58.653 55.000 0.00 0.00 0.00 3.13
51 52 0.982673 CTTAGCACGACGACTTTCCG 59.017 55.000 0.00 0.00 0.00 4.30
52 53 0.592637 TTAGCACGACGACTTTCCGA 59.407 50.000 0.00 0.00 0.00 4.55
53 54 0.806868 TAGCACGACGACTTTCCGAT 59.193 50.000 0.00 0.00 0.00 4.18
54 55 0.038526 AGCACGACGACTTTCCGATT 60.039 50.000 0.00 0.00 0.00 3.34
55 56 1.200716 AGCACGACGACTTTCCGATTA 59.799 47.619 0.00 0.00 0.00 1.75
56 57 2.159282 AGCACGACGACTTTCCGATTAT 60.159 45.455 0.00 0.00 0.00 1.28
57 58 2.215812 GCACGACGACTTTCCGATTATC 59.784 50.000 0.00 0.00 0.00 1.75
58 59 3.692576 CACGACGACTTTCCGATTATCT 58.307 45.455 0.00 0.00 0.00 1.98
59 60 4.787563 GCACGACGACTTTCCGATTATCTA 60.788 45.833 0.00 0.00 0.00 1.98
60 61 4.669728 CACGACGACTTTCCGATTATCTAC 59.330 45.833 0.00 0.00 0.00 2.59
61 62 4.574013 ACGACGACTTTCCGATTATCTACT 59.426 41.667 0.00 0.00 0.00 2.57
62 63 4.904724 CGACGACTTTCCGATTATCTACTG 59.095 45.833 0.00 0.00 0.00 2.74
63 64 4.608951 ACGACTTTCCGATTATCTACTGC 58.391 43.478 0.00 0.00 0.00 4.40
64 65 4.097437 ACGACTTTCCGATTATCTACTGCA 59.903 41.667 0.00 0.00 0.00 4.41
65 66 5.041287 CGACTTTCCGATTATCTACTGCAA 58.959 41.667 0.00 0.00 0.00 4.08
66 67 5.051641 CGACTTTCCGATTATCTACTGCAAC 60.052 44.000 0.00 0.00 0.00 4.17
67 68 5.730550 ACTTTCCGATTATCTACTGCAACA 58.269 37.500 0.00 0.00 0.00 3.33
68 69 6.170506 ACTTTCCGATTATCTACTGCAACAA 58.829 36.000 0.00 0.00 0.00 2.83
69 70 6.313905 ACTTTCCGATTATCTACTGCAACAAG 59.686 38.462 0.00 0.00 0.00 3.16
70 71 5.339008 TCCGATTATCTACTGCAACAAGT 57.661 39.130 0.00 0.00 0.00 3.16
71 72 5.730550 TCCGATTATCTACTGCAACAAGTT 58.269 37.500 0.00 0.00 0.00 2.66
72 73 5.580691 TCCGATTATCTACTGCAACAAGTTG 59.419 40.000 8.53 8.53 43.14 3.16
73 74 5.351465 CCGATTATCTACTGCAACAAGTTGT 59.649 40.000 13.82 1.64 42.31 3.32
74 75 6.243551 CGATTATCTACTGCAACAAGTTGTG 58.756 40.000 9.79 5.25 42.31 3.33
75 76 3.904136 ATCTACTGCAACAAGTTGTGC 57.096 42.857 9.79 15.02 42.31 4.57
76 77 1.946768 TCTACTGCAACAAGTTGTGCC 59.053 47.619 20.42 11.68 42.31 5.01
77 78 1.001378 CTACTGCAACAAGTTGTGCCC 60.001 52.381 20.42 9.71 42.31 5.36
78 79 1.299316 CTGCAACAAGTTGTGCCCG 60.299 57.895 20.42 12.02 42.31 6.13
79 80 2.027460 GCAACAAGTTGTGCCCGG 59.973 61.111 9.79 0.00 42.31 5.73
80 81 2.027460 CAACAAGTTGTGCCCGGC 59.973 61.111 9.79 1.04 35.92 6.13
81 82 3.223589 AACAAGTTGTGCCCGGCC 61.224 61.111 9.79 0.00 0.00 6.13
83 84 4.974721 CAAGTTGTGCCCGGCCCT 62.975 66.667 7.03 0.00 0.00 5.19
84 85 4.974721 AAGTTGTGCCCGGCCCTG 62.975 66.667 7.03 0.00 0.00 4.45
100 101 4.841617 TGGCGAGGGAGAGGCGAT 62.842 66.667 0.00 0.00 35.52 4.58
101 102 2.597805 GGCGAGGGAGAGGCGATA 60.598 66.667 0.00 0.00 0.00 2.92
102 103 2.201022 GGCGAGGGAGAGGCGATAA 61.201 63.158 0.00 0.00 0.00 1.75
103 104 1.536943 GGCGAGGGAGAGGCGATAAT 61.537 60.000 0.00 0.00 0.00 1.28
104 105 0.389166 GCGAGGGAGAGGCGATAATG 60.389 60.000 0.00 0.00 0.00 1.90
105 106 0.244994 CGAGGGAGAGGCGATAATGG 59.755 60.000 0.00 0.00 0.00 3.16
106 107 1.343069 GAGGGAGAGGCGATAATGGT 58.657 55.000 0.00 0.00 0.00 3.55
107 108 1.001406 GAGGGAGAGGCGATAATGGTG 59.999 57.143 0.00 0.00 0.00 4.17
108 109 0.035458 GGGAGAGGCGATAATGGTGG 59.965 60.000 0.00 0.00 0.00 4.61
109 110 0.759346 GGAGAGGCGATAATGGTGGT 59.241 55.000 0.00 0.00 0.00 4.16
110 111 1.541233 GGAGAGGCGATAATGGTGGTG 60.541 57.143 0.00 0.00 0.00 4.17
111 112 0.179045 AGAGGCGATAATGGTGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
112 113 1.498865 GAGGCGATAATGGTGGTGCG 61.499 60.000 0.00 0.00 0.00 5.34
113 114 2.327940 GCGATAATGGTGGTGCGC 59.672 61.111 0.00 0.00 37.60 6.09
114 115 3.022287 CGATAATGGTGGTGCGCC 58.978 61.111 10.11 10.11 34.12 6.53
115 116 1.523711 CGATAATGGTGGTGCGCCT 60.524 57.895 18.96 0.00 34.70 5.52
116 117 1.095228 CGATAATGGTGGTGCGCCTT 61.095 55.000 18.96 5.77 34.70 4.35
117 118 0.663153 GATAATGGTGGTGCGCCTTC 59.337 55.000 18.96 10.50 34.70 3.46
118 119 1.095228 ATAATGGTGGTGCGCCTTCG 61.095 55.000 18.96 0.00 34.70 3.79
129 130 2.873288 GCCTTCGGCTTGCTTCAG 59.127 61.111 0.00 0.00 46.69 3.02
130 131 1.968540 GCCTTCGGCTTGCTTCAGT 60.969 57.895 0.00 0.00 46.69 3.41
131 132 1.871772 CCTTCGGCTTGCTTCAGTG 59.128 57.895 0.00 0.00 0.00 3.66
132 133 1.208614 CTTCGGCTTGCTTCAGTGC 59.791 57.895 0.00 0.00 0.00 4.40
133 134 1.227943 TTCGGCTTGCTTCAGTGCT 60.228 52.632 0.00 0.00 0.00 4.40
134 135 0.819259 TTCGGCTTGCTTCAGTGCTT 60.819 50.000 0.00 0.00 0.00 3.91
135 136 1.081641 CGGCTTGCTTCAGTGCTTG 60.082 57.895 0.00 0.00 0.00 4.01
136 137 1.789078 CGGCTTGCTTCAGTGCTTGT 61.789 55.000 0.00 0.00 0.00 3.16
137 138 1.238439 GGCTTGCTTCAGTGCTTGTA 58.762 50.000 0.00 0.00 0.00 2.41
138 139 1.198637 GGCTTGCTTCAGTGCTTGTAG 59.801 52.381 0.00 0.00 0.00 2.74
139 140 1.876156 GCTTGCTTCAGTGCTTGTAGT 59.124 47.619 0.00 0.00 0.00 2.73
140 141 2.096019 GCTTGCTTCAGTGCTTGTAGTC 60.096 50.000 0.00 0.00 0.00 2.59
141 142 1.783284 TGCTTCAGTGCTTGTAGTCG 58.217 50.000 0.00 0.00 0.00 4.18
142 143 1.068588 TGCTTCAGTGCTTGTAGTCGT 59.931 47.619 0.00 0.00 0.00 4.34
143 144 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
144 145 2.862530 GCTTCAGTGCTTGTAGTCGTCA 60.863 50.000 0.00 0.00 0.00 4.35
145 146 2.417339 TCAGTGCTTGTAGTCGTCAC 57.583 50.000 0.00 0.00 0.00 3.67
146 147 1.954382 TCAGTGCTTGTAGTCGTCACT 59.046 47.619 0.00 0.00 38.40 3.41
147 148 3.143728 TCAGTGCTTGTAGTCGTCACTA 58.856 45.455 0.00 0.00 36.37 2.74
148 149 3.188667 TCAGTGCTTGTAGTCGTCACTAG 59.811 47.826 0.00 0.00 35.67 2.57
149 150 2.488545 AGTGCTTGTAGTCGTCACTAGG 59.511 50.000 0.00 0.00 35.67 3.02
150 151 2.228343 GTGCTTGTAGTCGTCACTAGGT 59.772 50.000 0.00 0.00 35.67 3.08
151 152 2.228103 TGCTTGTAGTCGTCACTAGGTG 59.772 50.000 0.00 0.00 35.67 4.00
152 153 2.415625 GCTTGTAGTCGTCACTAGGTGG 60.416 54.545 0.00 0.00 35.67 4.61
153 154 2.574006 TGTAGTCGTCACTAGGTGGT 57.426 50.000 0.00 0.00 35.67 4.16
154 155 2.430465 TGTAGTCGTCACTAGGTGGTC 58.570 52.381 0.00 0.00 35.67 4.02
155 156 2.039480 TGTAGTCGTCACTAGGTGGTCT 59.961 50.000 0.00 0.00 35.67 3.85
156 157 3.261643 TGTAGTCGTCACTAGGTGGTCTA 59.738 47.826 0.00 0.00 35.67 2.59
157 158 2.709213 AGTCGTCACTAGGTGGTCTAC 58.291 52.381 0.00 0.00 33.87 2.59
158 159 1.396301 GTCGTCACTAGGTGGTCTACG 59.604 57.143 0.00 0.00 33.87 3.51
159 160 1.276138 TCGTCACTAGGTGGTCTACGA 59.724 52.381 7.77 7.77 34.48 3.43
160 161 2.079158 CGTCACTAGGTGGTCTACGAA 58.921 52.381 0.00 0.00 33.87 3.85
161 162 2.681848 CGTCACTAGGTGGTCTACGAAT 59.318 50.000 0.00 0.00 33.87 3.34
162 163 3.242673 CGTCACTAGGTGGTCTACGAATC 60.243 52.174 0.00 0.00 33.87 2.52
163 164 3.946558 GTCACTAGGTGGTCTACGAATCT 59.053 47.826 0.00 0.00 33.87 2.40
164 165 3.945921 TCACTAGGTGGTCTACGAATCTG 59.054 47.826 0.00 0.00 33.87 2.90
165 166 2.688958 ACTAGGTGGTCTACGAATCTGC 59.311 50.000 0.00 0.00 0.00 4.26
166 167 1.557099 AGGTGGTCTACGAATCTGCA 58.443 50.000 0.00 0.00 0.00 4.41
167 168 2.111384 AGGTGGTCTACGAATCTGCAT 58.889 47.619 0.00 0.00 0.00 3.96
168 169 2.159043 AGGTGGTCTACGAATCTGCATG 60.159 50.000 0.00 0.00 0.00 4.06
169 170 2.418746 GGTGGTCTACGAATCTGCATGT 60.419 50.000 0.00 0.00 0.00 3.21
170 171 3.181479 GGTGGTCTACGAATCTGCATGTA 60.181 47.826 0.00 0.00 0.00 2.29
171 172 4.430007 GTGGTCTACGAATCTGCATGTAA 58.570 43.478 0.00 0.00 0.00 2.41
172 173 5.050490 GTGGTCTACGAATCTGCATGTAAT 58.950 41.667 0.00 0.00 0.00 1.89
173 174 5.523916 GTGGTCTACGAATCTGCATGTAATT 59.476 40.000 0.00 0.00 0.00 1.40
174 175 6.037172 GTGGTCTACGAATCTGCATGTAATTT 59.963 38.462 0.00 0.00 0.00 1.82
175 176 6.597672 TGGTCTACGAATCTGCATGTAATTTT 59.402 34.615 0.00 0.00 0.00 1.82
176 177 7.766738 TGGTCTACGAATCTGCATGTAATTTTA 59.233 33.333 0.00 0.00 0.00 1.52
177 178 8.774586 GGTCTACGAATCTGCATGTAATTTTAT 58.225 33.333 0.00 0.00 0.00 1.40
201 202 3.936902 TTCTTGTGTTCGTTGTACTGC 57.063 42.857 0.00 0.00 0.00 4.40
202 203 2.206750 TCTTGTGTTCGTTGTACTGCC 58.793 47.619 0.00 0.00 0.00 4.85
203 204 1.937223 CTTGTGTTCGTTGTACTGCCA 59.063 47.619 0.00 0.00 0.00 4.92
204 205 2.248280 TGTGTTCGTTGTACTGCCAT 57.752 45.000 0.00 0.00 0.00 4.40
205 206 1.870402 TGTGTTCGTTGTACTGCCATG 59.130 47.619 0.00 0.00 0.00 3.66
206 207 2.139917 GTGTTCGTTGTACTGCCATGA 58.860 47.619 0.00 0.00 0.00 3.07
207 208 2.742053 GTGTTCGTTGTACTGCCATGAT 59.258 45.455 0.00 0.00 0.00 2.45
208 209 3.000041 TGTTCGTTGTACTGCCATGATC 59.000 45.455 0.00 0.00 0.00 2.92
209 210 1.921243 TCGTTGTACTGCCATGATCG 58.079 50.000 0.00 0.00 0.00 3.69
210 211 1.474879 TCGTTGTACTGCCATGATCGA 59.525 47.619 0.00 0.00 0.00 3.59
211 212 2.094442 TCGTTGTACTGCCATGATCGAA 60.094 45.455 0.00 0.00 0.00 3.71
212 213 2.282555 CGTTGTACTGCCATGATCGAAG 59.717 50.000 0.00 0.00 0.00 3.79
213 214 3.521560 GTTGTACTGCCATGATCGAAGA 58.478 45.455 0.00 0.00 45.75 2.87
214 215 4.122776 GTTGTACTGCCATGATCGAAGAT 58.877 43.478 0.00 0.00 45.12 2.40
215 216 5.289595 GTTGTACTGCCATGATCGAAGATA 58.710 41.667 0.00 0.00 45.12 1.98
216 217 5.529581 TGTACTGCCATGATCGAAGATAA 57.470 39.130 0.00 0.00 45.12 1.75
217 218 5.532557 TGTACTGCCATGATCGAAGATAAG 58.467 41.667 0.00 0.00 45.12 1.73
218 219 4.679373 ACTGCCATGATCGAAGATAAGT 57.321 40.909 0.00 0.00 45.12 2.24
219 220 5.791336 ACTGCCATGATCGAAGATAAGTA 57.209 39.130 0.00 0.00 45.12 2.24
220 221 5.777802 ACTGCCATGATCGAAGATAAGTAG 58.222 41.667 0.00 0.00 45.12 2.57
221 222 5.536538 ACTGCCATGATCGAAGATAAGTAGA 59.463 40.000 0.00 0.00 45.12 2.59
222 223 6.210385 ACTGCCATGATCGAAGATAAGTAGAT 59.790 38.462 0.00 0.00 45.12 1.98
223 224 6.997655 TGCCATGATCGAAGATAAGTAGATT 58.002 36.000 0.00 0.00 45.12 2.40
224 225 6.870439 TGCCATGATCGAAGATAAGTAGATTG 59.130 38.462 0.00 0.00 45.12 2.67
225 226 7.093354 GCCATGATCGAAGATAAGTAGATTGA 58.907 38.462 0.00 0.00 45.12 2.57
226 227 7.600375 GCCATGATCGAAGATAAGTAGATTGAA 59.400 37.037 0.00 0.00 45.12 2.69
227 228 9.481340 CCATGATCGAAGATAAGTAGATTGAAA 57.519 33.333 0.00 0.00 45.12 2.69
233 234 9.355215 TCGAAGATAAGTAGATTGAAAGTTCAC 57.645 33.333 0.00 0.00 36.83 3.18
234 235 8.596380 CGAAGATAAGTAGATTGAAAGTTCACC 58.404 37.037 0.00 0.00 36.83 4.02
235 236 8.480643 AAGATAAGTAGATTGAAAGTTCACCG 57.519 34.615 0.00 0.00 36.83 4.94
236 237 7.837863 AGATAAGTAGATTGAAAGTTCACCGA 58.162 34.615 0.00 0.00 36.83 4.69
237 238 8.478877 AGATAAGTAGATTGAAAGTTCACCGAT 58.521 33.333 0.00 0.00 36.83 4.18
238 239 9.745880 GATAAGTAGATTGAAAGTTCACCGATA 57.254 33.333 0.00 0.00 36.83 2.92
240 241 8.842358 AAGTAGATTGAAAGTTCACCGATAAA 57.158 30.769 0.00 0.00 36.83 1.40
241 242 8.480643 AGTAGATTGAAAGTTCACCGATAAAG 57.519 34.615 0.00 0.00 36.83 1.85
242 243 8.311836 AGTAGATTGAAAGTTCACCGATAAAGA 58.688 33.333 0.00 0.00 36.83 2.52
243 244 7.979444 AGATTGAAAGTTCACCGATAAAGAA 57.021 32.000 0.00 0.00 36.83 2.52
244 245 8.034058 AGATTGAAAGTTCACCGATAAAGAAG 57.966 34.615 0.00 0.00 36.83 2.85
250 251 8.446599 AAAGTTCACCGATAAAGAAGAAGAAA 57.553 30.769 0.00 0.00 0.00 2.52
289 290 9.935682 TTTCGATGAGAAAATGTTGCTATATTC 57.064 29.630 0.00 0.00 45.05 1.75
290 291 8.893219 TCGATGAGAAAATGTTGCTATATTCT 57.107 30.769 0.00 0.00 0.00 2.40
291 292 9.330063 TCGATGAGAAAATGTTGCTATATTCTT 57.670 29.630 0.00 0.00 0.00 2.52
295 296 8.840321 TGAGAAAATGTTGCTATATTCTTAGGC 58.160 33.333 0.00 0.00 0.00 3.93
296 297 8.171164 AGAAAATGTTGCTATATTCTTAGGCC 57.829 34.615 0.00 0.00 0.00 5.19
297 298 6.901081 AAATGTTGCTATATTCTTAGGCCC 57.099 37.500 0.00 0.00 0.00 5.80
298 299 5.850046 ATGTTGCTATATTCTTAGGCCCT 57.150 39.130 0.00 0.00 0.00 5.19
299 300 4.973168 TGTTGCTATATTCTTAGGCCCTG 58.027 43.478 0.00 0.00 0.00 4.45
300 301 4.412199 TGTTGCTATATTCTTAGGCCCTGT 59.588 41.667 0.00 0.00 0.00 4.00
301 302 5.104109 TGTTGCTATATTCTTAGGCCCTGTT 60.104 40.000 0.00 0.00 0.00 3.16
302 303 5.646692 TGCTATATTCTTAGGCCCTGTTT 57.353 39.130 0.00 0.00 0.00 2.83
303 304 5.376625 TGCTATATTCTTAGGCCCTGTTTG 58.623 41.667 0.00 0.00 0.00 2.93
304 305 5.104109 TGCTATATTCTTAGGCCCTGTTTGT 60.104 40.000 0.00 0.00 0.00 2.83
305 306 5.828328 GCTATATTCTTAGGCCCTGTTTGTT 59.172 40.000 0.00 0.00 0.00 2.83
306 307 6.321435 GCTATATTCTTAGGCCCTGTTTGTTT 59.679 38.462 0.00 0.00 0.00 2.83
307 308 6.775594 ATATTCTTAGGCCCTGTTTGTTTC 57.224 37.500 0.00 0.00 0.00 2.78
308 309 2.500229 TCTTAGGCCCTGTTTGTTTCG 58.500 47.619 0.00 0.00 0.00 3.46
309 310 1.539827 CTTAGGCCCTGTTTGTTTCGG 59.460 52.381 0.00 0.00 0.00 4.30
310 311 0.891904 TAGGCCCTGTTTGTTTCGGC 60.892 55.000 0.00 0.00 38.96 5.54
311 312 2.200337 GGCCCTGTTTGTTTCGGCT 61.200 57.895 0.00 0.00 39.64 5.52
312 313 1.739667 GCCCTGTTTGTTTCGGCTT 59.260 52.632 0.00 0.00 36.65 4.35
313 314 0.104120 GCCCTGTTTGTTTCGGCTTT 59.896 50.000 0.00 0.00 36.65 3.51
314 315 1.472552 GCCCTGTTTGTTTCGGCTTTT 60.473 47.619 0.00 0.00 36.65 2.27
315 316 2.200899 CCCTGTTTGTTTCGGCTTTTG 58.799 47.619 0.00 0.00 0.00 2.44
316 317 1.592543 CCTGTTTGTTTCGGCTTTTGC 59.407 47.619 0.00 0.00 46.64 3.68
317 318 2.539476 CTGTTTGTTTCGGCTTTTGCT 58.461 42.857 0.00 0.00 46.54 3.91
318 319 2.929398 CTGTTTGTTTCGGCTTTTGCTT 59.071 40.909 0.00 0.00 46.54 3.91
319 320 2.926838 TGTTTGTTTCGGCTTTTGCTTC 59.073 40.909 0.00 0.00 46.54 3.86
320 321 3.186909 GTTTGTTTCGGCTTTTGCTTCT 58.813 40.909 0.00 0.00 46.54 2.85
321 322 2.490328 TGTTTCGGCTTTTGCTTCTG 57.510 45.000 0.00 0.00 46.54 3.02
322 323 1.131771 GTTTCGGCTTTTGCTTCTGC 58.868 50.000 0.00 0.00 46.54 4.26
323 324 1.032014 TTTCGGCTTTTGCTTCTGCT 58.968 45.000 0.00 0.00 46.54 4.24
324 325 1.032014 TTCGGCTTTTGCTTCTGCTT 58.968 45.000 0.00 0.00 46.54 3.91
325 326 1.032014 TCGGCTTTTGCTTCTGCTTT 58.968 45.000 0.00 0.00 46.54 3.51
326 327 1.408702 TCGGCTTTTGCTTCTGCTTTT 59.591 42.857 0.00 0.00 46.54 2.27
327 328 1.523934 CGGCTTTTGCTTCTGCTTTTG 59.476 47.619 0.00 0.00 46.54 2.44
328 329 1.262417 GGCTTTTGCTTCTGCTTTTGC 59.738 47.619 0.00 0.00 46.54 3.68
344 345 5.036090 GCTTTTGCAACTTTTCCATTTTGG 58.964 37.500 0.00 0.00 46.58 3.28
345 346 4.629251 TTTGCAACTTTTCCATTTTGGC 57.371 36.364 0.00 0.00 37.47 4.52
346 347 2.570135 TGCAACTTTTCCATTTTGGCC 58.430 42.857 0.00 0.00 37.47 5.36
347 348 2.092753 TGCAACTTTTCCATTTTGGCCA 60.093 40.909 0.00 0.00 37.47 5.36
348 349 2.948315 GCAACTTTTCCATTTTGGCCAA 59.052 40.909 16.05 16.05 37.47 4.52
349 350 3.379688 GCAACTTTTCCATTTTGGCCAAA 59.620 39.130 27.13 27.13 37.47 3.28
350 351 4.142293 GCAACTTTTCCATTTTGGCCAAAA 60.142 37.500 38.39 38.39 43.48 2.44
351 352 5.623141 GCAACTTTTCCATTTTGGCCAAAAA 60.623 36.000 39.45 25.01 42.71 1.94
352 353 5.833406 ACTTTTCCATTTTGGCCAAAAAG 57.167 34.783 39.45 34.72 42.71 2.27
353 354 4.097741 ACTTTTCCATTTTGGCCAAAAAGC 59.902 37.500 39.45 0.00 40.04 3.51
365 366 3.002791 GCCAAAAAGCCATAAAAGCTCC 58.997 45.455 0.00 0.00 40.49 4.70
366 367 3.306989 GCCAAAAAGCCATAAAAGCTCCT 60.307 43.478 0.00 0.00 40.49 3.69
367 368 4.081697 GCCAAAAAGCCATAAAAGCTCCTA 60.082 41.667 0.00 0.00 40.49 2.94
368 369 5.568624 GCCAAAAAGCCATAAAAGCTCCTAA 60.569 40.000 0.00 0.00 40.49 2.69
369 370 6.463360 CCAAAAAGCCATAAAAGCTCCTAAA 58.537 36.000 0.00 0.00 40.49 1.85
370 371 7.105588 CCAAAAAGCCATAAAAGCTCCTAAAT 58.894 34.615 0.00 0.00 40.49 1.40
371 372 8.257306 CCAAAAAGCCATAAAAGCTCCTAAATA 58.743 33.333 0.00 0.00 40.49 1.40
372 373 9.305925 CAAAAAGCCATAAAAGCTCCTAAATAG 57.694 33.333 0.00 0.00 40.49 1.73
373 374 7.588497 AAAGCCATAAAAGCTCCTAAATAGG 57.412 36.000 0.00 0.00 40.49 2.57
374 375 6.267492 AGCCATAAAAGCTCCTAAATAGGT 57.733 37.500 6.39 0.00 44.02 3.08
375 376 6.064717 AGCCATAAAAGCTCCTAAATAGGTG 58.935 40.000 6.39 5.41 44.02 4.00
384 385 3.954258 CTCCTAAATAGGTGCTTTTGGGG 59.046 47.826 6.39 0.00 44.02 4.96
385 386 2.430694 CCTAAATAGGTGCTTTTGGGGC 59.569 50.000 0.00 0.00 38.69 5.80
386 387 2.325661 AAATAGGTGCTTTTGGGGCT 57.674 45.000 0.00 0.00 0.00 5.19
387 388 2.325661 AATAGGTGCTTTTGGGGCTT 57.674 45.000 0.00 0.00 0.00 4.35
388 389 2.325661 ATAGGTGCTTTTGGGGCTTT 57.674 45.000 0.00 0.00 0.00 3.51
389 390 2.095604 TAGGTGCTTTTGGGGCTTTT 57.904 45.000 0.00 0.00 0.00 2.27
390 391 2.095604 AGGTGCTTTTGGGGCTTTTA 57.904 45.000 0.00 0.00 0.00 1.52
391 392 2.619931 AGGTGCTTTTGGGGCTTTTAT 58.380 42.857 0.00 0.00 0.00 1.40
392 393 2.302733 AGGTGCTTTTGGGGCTTTTATG 59.697 45.455 0.00 0.00 0.00 1.90
393 394 2.615240 GGTGCTTTTGGGGCTTTTATGG 60.615 50.000 0.00 0.00 0.00 2.74
394 395 1.003003 TGCTTTTGGGGCTTTTATGGC 59.997 47.619 0.00 0.00 0.00 4.40
395 396 1.278985 GCTTTTGGGGCTTTTATGGCT 59.721 47.619 0.00 0.00 0.00 4.75
396 397 2.290260 GCTTTTGGGGCTTTTATGGCTT 60.290 45.455 0.00 0.00 0.00 4.35
397 398 3.810387 GCTTTTGGGGCTTTTATGGCTTT 60.810 43.478 0.00 0.00 0.00 3.51
398 399 4.397420 CTTTTGGGGCTTTTATGGCTTTT 58.603 39.130 0.00 0.00 0.00 2.27
399 400 3.415457 TTGGGGCTTTTATGGCTTTTG 57.585 42.857 0.00 0.00 0.00 2.44
400 401 2.614259 TGGGGCTTTTATGGCTTTTGA 58.386 42.857 0.00 0.00 0.00 2.69
401 402 3.180507 TGGGGCTTTTATGGCTTTTGAT 58.819 40.909 0.00 0.00 0.00 2.57
402 403 3.055240 TGGGGCTTTTATGGCTTTTGATG 60.055 43.478 0.00 0.00 0.00 3.07
403 404 3.197549 GGGGCTTTTATGGCTTTTGATGA 59.802 43.478 0.00 0.00 0.00 2.92
404 405 4.323409 GGGGCTTTTATGGCTTTTGATGAA 60.323 41.667 0.00 0.00 0.00 2.57
405 406 4.631377 GGGCTTTTATGGCTTTTGATGAAC 59.369 41.667 0.00 0.00 0.00 3.18
406 407 4.631377 GGCTTTTATGGCTTTTGATGAACC 59.369 41.667 0.00 0.00 0.00 3.62
407 408 5.237048 GCTTTTATGGCTTTTGATGAACCA 58.763 37.500 0.00 0.00 34.28 3.67
408 409 5.700373 GCTTTTATGGCTTTTGATGAACCAA 59.300 36.000 0.00 0.00 33.30 3.67
409 410 6.372381 GCTTTTATGGCTTTTGATGAACCAAT 59.628 34.615 0.00 0.00 33.30 3.16
410 411 7.548780 GCTTTTATGGCTTTTGATGAACCAATA 59.451 33.333 0.00 0.00 33.30 1.90
411 412 9.603921 CTTTTATGGCTTTTGATGAACCAATAT 57.396 29.630 0.00 0.00 33.30 1.28
415 416 7.473735 TGGCTTTTGATGAACCAATATAACA 57.526 32.000 0.00 0.00 0.00 2.41
416 417 7.901029 TGGCTTTTGATGAACCAATATAACAA 58.099 30.769 0.00 0.00 0.00 2.83
417 418 8.538701 TGGCTTTTGATGAACCAATATAACAAT 58.461 29.630 0.00 0.00 0.00 2.71
448 449 7.454260 CTCCAAAAGCACCTATTTAGAAGTT 57.546 36.000 0.00 0.00 0.00 2.66
449 450 7.833285 TCCAAAAGCACCTATTTAGAAGTTT 57.167 32.000 0.00 0.00 0.00 2.66
450 451 8.245195 TCCAAAAGCACCTATTTAGAAGTTTT 57.755 30.769 0.00 0.00 0.00 2.43
451 452 8.700973 TCCAAAAGCACCTATTTAGAAGTTTTT 58.299 29.630 0.00 0.00 0.00 1.94
452 453 8.764287 CCAAAAGCACCTATTTAGAAGTTTTTG 58.236 33.333 15.68 15.68 37.55 2.44
453 454 9.313118 CAAAAGCACCTATTTAGAAGTTTTTGT 57.687 29.630 15.05 0.00 35.74 2.83
454 455 8.871686 AAAGCACCTATTTAGAAGTTTTTGTG 57.128 30.769 0.00 0.00 0.00 3.33
455 456 6.981722 AGCACCTATTTAGAAGTTTTTGTGG 58.018 36.000 0.00 0.00 0.00 4.17
456 457 5.633601 GCACCTATTTAGAAGTTTTTGTGGC 59.366 40.000 0.00 0.00 0.00 5.01
457 458 6.516693 GCACCTATTTAGAAGTTTTTGTGGCT 60.517 38.462 0.00 0.00 0.00 4.75
458 459 7.433680 CACCTATTTAGAAGTTTTTGTGGCTT 58.566 34.615 0.00 0.00 0.00 4.35
459 460 7.926018 CACCTATTTAGAAGTTTTTGTGGCTTT 59.074 33.333 0.00 0.00 0.00 3.51
460 461 8.482943 ACCTATTTAGAAGTTTTTGTGGCTTTT 58.517 29.630 0.00 0.00 0.00 2.27
461 462 9.325198 CCTATTTAGAAGTTTTTGTGGCTTTTT 57.675 29.630 0.00 0.00 0.00 1.94
463 464 8.785329 ATTTAGAAGTTTTTGTGGCTTTTTGA 57.215 26.923 0.00 0.00 0.00 2.69
464 465 7.589574 TTAGAAGTTTTTGTGGCTTTTTGAC 57.410 32.000 0.00 0.00 0.00 3.18
465 466 4.625311 AGAAGTTTTTGTGGCTTTTTGACG 59.375 37.500 0.00 0.00 0.00 4.35
466 467 4.181309 AGTTTTTGTGGCTTTTTGACGA 57.819 36.364 0.00 0.00 0.00 4.20
467 468 4.561105 AGTTTTTGTGGCTTTTTGACGAA 58.439 34.783 0.00 0.00 0.00 3.85
468 469 4.991687 AGTTTTTGTGGCTTTTTGACGAAA 59.008 33.333 0.00 0.00 0.00 3.46
469 470 5.120053 AGTTTTTGTGGCTTTTTGACGAAAG 59.880 36.000 0.00 0.00 39.16 2.62
483 484 3.502191 ACGAAAGTGAAAAAGCTGCAA 57.498 38.095 1.02 0.00 46.97 4.08
484 485 3.843999 ACGAAAGTGAAAAAGCTGCAAA 58.156 36.364 1.02 0.00 46.97 3.68
485 486 4.241681 ACGAAAGTGAAAAAGCTGCAAAA 58.758 34.783 1.02 0.00 46.97 2.44
486 487 4.327087 ACGAAAGTGAAAAAGCTGCAAAAG 59.673 37.500 1.02 0.00 46.97 2.27
499 500 4.345271 CTGCAAAAGCAAAAGCAAAAGT 57.655 36.364 0.00 0.00 36.44 2.66
500 501 4.336932 CTGCAAAAGCAAAAGCAAAAGTC 58.663 39.130 0.00 0.00 36.44 3.01
501 502 3.126686 TGCAAAAGCAAAAGCAAAAGTCC 59.873 39.130 0.00 0.00 33.48 3.85
502 503 3.126686 GCAAAAGCAAAAGCAAAAGTCCA 59.873 39.130 0.00 0.00 0.00 4.02
503 504 4.379290 GCAAAAGCAAAAGCAAAAGTCCAA 60.379 37.500 0.00 0.00 0.00 3.53
504 505 5.697826 CAAAAGCAAAAGCAAAAGTCCAAA 58.302 33.333 0.00 0.00 0.00 3.28
505 506 4.944962 AAGCAAAAGCAAAAGTCCAAAC 57.055 36.364 0.00 0.00 0.00 2.93
506 507 3.936564 AGCAAAAGCAAAAGTCCAAACA 58.063 36.364 0.00 0.00 0.00 2.83
507 508 4.322567 AGCAAAAGCAAAAGTCCAAACAA 58.677 34.783 0.00 0.00 0.00 2.83
508 509 4.759183 AGCAAAAGCAAAAGTCCAAACAAA 59.241 33.333 0.00 0.00 0.00 2.83
509 510 4.851014 GCAAAAGCAAAAGTCCAAACAAAC 59.149 37.500 0.00 0.00 0.00 2.93
510 511 5.561725 GCAAAAGCAAAAGTCCAAACAAACA 60.562 36.000 0.00 0.00 0.00 2.83
511 512 6.610456 CAAAAGCAAAAGTCCAAACAAACAT 58.390 32.000 0.00 0.00 0.00 2.71
512 513 5.799681 AAGCAAAAGTCCAAACAAACATG 57.200 34.783 0.00 0.00 0.00 3.21
513 514 4.190772 AGCAAAAGTCCAAACAAACATGG 58.809 39.130 0.00 0.00 38.09 3.66
514 515 3.312146 GCAAAAGTCCAAACAAACATGGG 59.688 43.478 0.00 0.00 37.31 4.00
520 521 3.572255 GTCCAAACAAACATGGGCTTAGA 59.428 43.478 0.00 0.00 38.31 2.10
521 522 4.038642 GTCCAAACAAACATGGGCTTAGAA 59.961 41.667 0.00 0.00 38.31 2.10
532 533 5.354234 ACATGGGCTTAGAAAATGAACTACG 59.646 40.000 0.00 0.00 0.00 3.51
533 534 4.258543 TGGGCTTAGAAAATGAACTACGG 58.741 43.478 0.00 0.00 0.00 4.02
556 1386 4.243007 AGTAAGCTTCAAAACATGTGCC 57.757 40.909 0.00 0.00 32.75 5.01
635 1487 1.341531 CGCCGAGGACTCCATAAAGAT 59.658 52.381 0.00 0.00 0.00 2.40
636 1488 2.760374 GCCGAGGACTCCATAAAGATG 58.240 52.381 0.00 0.00 0.00 2.90
741 2941 3.070446 TGAACCGAACAGTTACTCATGGT 59.930 43.478 0.00 0.00 0.00 3.55
768 2969 7.109501 GCCATAATTGTCCAAACCCTTATTTT 58.890 34.615 0.00 0.00 0.00 1.82
769 2970 7.609918 GCCATAATTGTCCAAACCCTTATTTTT 59.390 33.333 0.00 0.00 0.00 1.94
1025 4820 1.204941 GCCTCTCGGTGATACTGTTGT 59.795 52.381 0.00 0.00 0.00 3.32
2152 6943 8.321353 TCAATTCCATTATGACTTGTGAGTAGT 58.679 33.333 0.00 0.00 35.88 2.73
2153 6944 8.950210 CAATTCCATTATGACTTGTGAGTAGTT 58.050 33.333 0.00 0.00 35.88 2.24
2154 6945 7.905604 TTCCATTATGACTTGTGAGTAGTTG 57.094 36.000 0.00 0.00 35.88 3.16
2155 6946 5.874810 TCCATTATGACTTGTGAGTAGTTGC 59.125 40.000 0.00 0.00 35.88 4.17
2156 6947 5.877012 CCATTATGACTTGTGAGTAGTTGCT 59.123 40.000 0.00 0.00 35.88 3.91
2157 6948 7.041721 CCATTATGACTTGTGAGTAGTTGCTA 58.958 38.462 0.00 0.00 35.88 3.49
2158 6949 7.549134 CCATTATGACTTGTGAGTAGTTGCTAA 59.451 37.037 0.00 0.00 35.88 3.09
2533 7358 4.076394 TGTTGTAGCCTTCACCCAAATAC 58.924 43.478 0.00 0.00 0.00 1.89
2535 7360 4.216411 TGTAGCCTTCACCCAAATACTC 57.784 45.455 0.00 0.00 0.00 2.59
2536 7361 2.808906 AGCCTTCACCCAAATACTCC 57.191 50.000 0.00 0.00 0.00 3.85
2537 7362 1.285078 AGCCTTCACCCAAATACTCCC 59.715 52.381 0.00 0.00 0.00 4.30
2538 7363 1.285078 GCCTTCACCCAAATACTCCCT 59.715 52.381 0.00 0.00 0.00 4.20
2542 7367 2.858644 TCACCCAAATACTCCCTCCAT 58.141 47.619 0.00 0.00 0.00 3.41
2543 7368 3.197983 TCACCCAAATACTCCCTCCATT 58.802 45.455 0.00 0.00 0.00 3.16
2546 7371 2.513738 CCCAAATACTCCCTCCATTCCA 59.486 50.000 0.00 0.00 0.00 3.53
2549 7374 5.211201 CCAAATACTCCCTCCATTCCAAAT 58.789 41.667 0.00 0.00 0.00 2.32
2550 7375 6.372931 CCAAATACTCCCTCCATTCCAAATA 58.627 40.000 0.00 0.00 0.00 1.40
2551 7376 6.265422 CCAAATACTCCCTCCATTCCAAATAC 59.735 42.308 0.00 0.00 0.00 1.89
2554 7379 4.860022 ACTCCCTCCATTCCAAATACTTG 58.140 43.478 0.00 0.00 0.00 3.16
2557 7382 4.540099 TCCCTCCATTCCAAATACTTGTCT 59.460 41.667 0.00 0.00 0.00 3.41
2558 7383 5.015178 TCCCTCCATTCCAAATACTTGTCTT 59.985 40.000 0.00 0.00 0.00 3.01
2559 7384 5.716703 CCCTCCATTCCAAATACTTGTCTTT 59.283 40.000 0.00 0.00 0.00 2.52
2560 7385 6.127619 CCCTCCATTCCAAATACTTGTCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
2561 7386 6.660949 CCTCCATTCCAAATACTTGTCTTTCT 59.339 38.462 0.00 0.00 0.00 2.52
2562 7387 7.829211 CCTCCATTCCAAATACTTGTCTTTCTA 59.171 37.037 0.00 0.00 0.00 2.10
2563 7388 8.792830 TCCATTCCAAATACTTGTCTTTCTAG 57.207 34.615 0.00 0.00 0.00 2.43
2564 7389 7.829211 TCCATTCCAAATACTTGTCTTTCTAGG 59.171 37.037 0.00 0.00 0.00 3.02
2565 7390 7.415653 CCATTCCAAATACTTGTCTTTCTAGGC 60.416 40.741 0.00 0.00 0.00 3.93
2567 7392 6.721318 TCCAAATACTTGTCTTTCTAGGCAT 58.279 36.000 0.00 0.00 35.56 4.40
2569 7394 7.336931 TCCAAATACTTGTCTTTCTAGGCATTC 59.663 37.037 0.00 0.00 35.56 2.67
2570 7395 7.337942 CCAAATACTTGTCTTTCTAGGCATTCT 59.662 37.037 0.00 0.00 35.56 2.40
2572 7397 9.959721 AAATACTTGTCTTTCTAGGCATTCTAA 57.040 29.630 0.00 0.00 35.56 2.10
2573 7398 9.959721 AATACTTGTCTTTCTAGGCATTCTAAA 57.040 29.630 0.00 0.00 35.56 1.85
2575 7400 8.273780 ACTTGTCTTTCTAGGCATTCTAAATG 57.726 34.615 0.00 0.00 35.56 2.32
2576 7401 7.337942 ACTTGTCTTTCTAGGCATTCTAAATGG 59.662 37.037 2.17 0.00 35.56 3.16
2578 7403 6.823689 TGTCTTTCTAGGCATTCTAAATGGAC 59.176 38.462 2.17 0.00 29.10 4.02
2579 7404 7.051000 GTCTTTCTAGGCATTCTAAATGGACT 58.949 38.462 2.17 0.00 0.00 3.85
2581 7406 6.814954 TTCTAGGCATTCTAAATGGACTCT 57.185 37.500 2.17 0.00 0.00 3.24
2582 7407 7.914427 TTCTAGGCATTCTAAATGGACTCTA 57.086 36.000 2.17 0.00 0.00 2.43
2583 7408 8.497910 TTCTAGGCATTCTAAATGGACTCTAT 57.502 34.615 2.17 0.00 0.00 1.98
2584 7409 9.601810 TTCTAGGCATTCTAAATGGACTCTATA 57.398 33.333 2.17 0.00 0.00 1.31
2585 7410 9.775539 TCTAGGCATTCTAAATGGACTCTATAT 57.224 33.333 2.17 0.00 0.00 0.86
2588 7413 8.470805 AGGCATTCTAAATGGACTCTATATACG 58.529 37.037 2.17 0.00 0.00 3.06
2590 7415 8.467598 GCATTCTAAATGGACTCTATATACGGA 58.532 37.037 2.17 0.00 0.00 4.69
2593 7418 7.997482 TCTAAATGGACTCTATATACGGATGC 58.003 38.462 0.00 0.00 0.00 3.91
2596 7485 5.582689 TGGACTCTATATACGGATGCATG 57.417 43.478 2.46 0.00 0.00 4.06
2599 7488 6.318900 TGGACTCTATATACGGATGCATGTAG 59.681 42.308 2.46 0.00 0.00 2.74
2602 7491 6.884836 ACTCTATATACGGATGCATGTAGACA 59.115 38.462 2.46 0.00 0.00 3.41
2612 7501 8.559536 ACGGATGCATGTAGACATATTTTAAAG 58.440 33.333 2.46 0.00 34.26 1.85
2614 7503 9.669353 GGATGCATGTAGACATATTTTAAAGTG 57.331 33.333 2.46 0.00 34.26 3.16
2632 7521 5.931441 AAGTGTAGATTCACTCACTTTGC 57.069 39.130 12.16 0.00 46.25 3.68
2633 7522 3.990469 AGTGTAGATTCACTCACTTTGCG 59.010 43.478 0.00 0.00 44.07 4.85
2635 7524 3.987868 TGTAGATTCACTCACTTTGCGTC 59.012 43.478 0.00 0.00 0.00 5.19
2636 7525 2.061773 AGATTCACTCACTTTGCGTCG 58.938 47.619 0.00 0.00 0.00 5.12
2638 7527 2.495409 TTCACTCACTTTGCGTCGTA 57.505 45.000 0.00 0.00 0.00 3.43
2640 7529 2.324860 TCACTCACTTTGCGTCGTATG 58.675 47.619 0.00 0.00 0.00 2.39
2643 7532 3.300853 CACTCACTTTGCGTCGTATGTAG 59.699 47.826 0.00 0.00 0.00 2.74
2647 7536 3.671459 CACTTTGCGTCGTATGTAGTCAA 59.329 43.478 0.00 0.00 0.00 3.18
2655 7807 5.164031 GCGTCGTATGTAGTCAATTGTTGAA 60.164 40.000 5.13 0.00 42.15 2.69
2665 7817 9.996554 TGTAGTCAATTGTTGAAATCTCTAGAA 57.003 29.630 5.13 0.00 42.15 2.10
2668 7820 9.784531 AGTCAATTGTTGAAATCTCTAGAAAGA 57.215 29.630 5.13 0.00 42.15 2.52
2669 7821 9.818796 GTCAATTGTTGAAATCTCTAGAAAGAC 57.181 33.333 5.13 0.00 42.15 3.01
2670 7822 9.559732 TCAATTGTTGAAATCTCTAGAAAGACA 57.440 29.630 5.13 0.00 36.59 3.41
2684 7836 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
2685 7837 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
2686 7838 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2687 7839 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2688 7840 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2689 7841 5.021458 AGACAAGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
2690 7842 5.482878 AGACAAGTATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
2691 7843 5.731591 ACAAGTATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
2753 8174 4.540359 AAAGAAAAATGCCATGCTGCTA 57.460 36.364 0.00 0.00 0.00 3.49
2942 8364 0.842613 CGTCGAGCATCATTCTGACG 59.157 55.000 0.00 0.00 42.37 4.35
2949 8371 2.668457 AGCATCATTCTGACGTCGAAAC 59.332 45.455 20.79 11.60 0.00 2.78
2980 8412 4.491676 TCTCTTTCCTCCGTTTTGATACG 58.508 43.478 0.00 0.00 41.06 3.06
3035 8563 8.439971 AGATGTACAAATCCCATCTTAGCATTA 58.560 33.333 0.00 0.00 41.87 1.90
3289 9397 2.064762 CTATGCAGCTAGATTCGGCAC 58.935 52.381 0.00 1.11 37.45 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.725784 CAACGCACCAGAACAATCGC 60.726 55.000 0.00 0.00 0.00 4.58
1 2 0.110238 CCAACGCACCAGAACAATCG 60.110 55.000 0.00 0.00 0.00 3.34
2 3 0.951558 ACCAACGCACCAGAACAATC 59.048 50.000 0.00 0.00 0.00 2.67
3 4 0.951558 GACCAACGCACCAGAACAAT 59.048 50.000 0.00 0.00 0.00 2.71
4 5 1.098712 GGACCAACGCACCAGAACAA 61.099 55.000 0.00 0.00 0.00 2.83
5 6 1.525077 GGACCAACGCACCAGAACA 60.525 57.895 0.00 0.00 0.00 3.18
6 7 0.034337 TAGGACCAACGCACCAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
7 8 0.981183 ATAGGACCAACGCACCAGAA 59.019 50.000 0.00 0.00 0.00 3.02
8 9 0.249120 CATAGGACCAACGCACCAGA 59.751 55.000 0.00 0.00 0.00 3.86
9 10 0.744414 CCATAGGACCAACGCACCAG 60.744 60.000 0.00 0.00 0.00 4.00
10 11 1.298340 CCATAGGACCAACGCACCA 59.702 57.895 0.00 0.00 0.00 4.17
11 12 1.451387 CCCATAGGACCAACGCACC 60.451 63.158 0.00 0.00 33.47 5.01
12 13 1.451387 CCCCATAGGACCAACGCAC 60.451 63.158 0.00 0.00 38.24 5.34
13 14 2.994699 CCCCATAGGACCAACGCA 59.005 61.111 0.00 0.00 38.24 5.24
14 15 2.516225 GCCCCATAGGACCAACGC 60.516 66.667 0.00 0.00 38.24 4.84
15 16 2.192175 GGCCCCATAGGACCAACG 59.808 66.667 0.00 0.00 37.96 4.10
21 22 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
22 23 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
23 24 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
24 25 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
25 26 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
26 27 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
27 28 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
28 29 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
29 30 0.669625 AAAGTCGTCGTGCTAAGGCC 60.670 55.000 0.00 0.00 37.74 5.19
30 31 0.714439 GAAAGTCGTCGTGCTAAGGC 59.286 55.000 0.00 0.00 39.26 4.35
31 32 1.347320 GGAAAGTCGTCGTGCTAAGG 58.653 55.000 0.00 0.00 0.00 2.69
32 33 0.982673 CGGAAAGTCGTCGTGCTAAG 59.017 55.000 0.00 0.00 0.00 2.18
33 34 0.592637 TCGGAAAGTCGTCGTGCTAA 59.407 50.000 0.00 0.00 0.00 3.09
34 35 0.806868 ATCGGAAAGTCGTCGTGCTA 59.193 50.000 0.00 0.00 0.00 3.49
35 36 0.038526 AATCGGAAAGTCGTCGTGCT 60.039 50.000 0.00 0.00 0.00 4.40
36 37 1.621107 TAATCGGAAAGTCGTCGTGC 58.379 50.000 0.00 0.00 0.00 5.34
37 38 3.692576 AGATAATCGGAAAGTCGTCGTG 58.307 45.455 0.00 0.00 0.00 4.35
38 39 4.574013 AGTAGATAATCGGAAAGTCGTCGT 59.426 41.667 0.00 0.00 0.00 4.34
39 40 4.904724 CAGTAGATAATCGGAAAGTCGTCG 59.095 45.833 0.00 0.00 0.00 5.12
40 41 4.676018 GCAGTAGATAATCGGAAAGTCGTC 59.324 45.833 0.00 0.00 0.00 4.20
41 42 4.097437 TGCAGTAGATAATCGGAAAGTCGT 59.903 41.667 0.00 0.00 0.00 4.34
42 43 4.607955 TGCAGTAGATAATCGGAAAGTCG 58.392 43.478 0.00 0.00 0.00 4.18
43 44 5.810587 TGTTGCAGTAGATAATCGGAAAGTC 59.189 40.000 0.00 0.00 0.00 3.01
44 45 5.730550 TGTTGCAGTAGATAATCGGAAAGT 58.269 37.500 0.00 0.00 0.00 2.66
45 46 6.313905 ACTTGTTGCAGTAGATAATCGGAAAG 59.686 38.462 0.00 0.00 0.00 2.62
46 47 6.170506 ACTTGTTGCAGTAGATAATCGGAAA 58.829 36.000 0.00 0.00 0.00 3.13
47 48 5.730550 ACTTGTTGCAGTAGATAATCGGAA 58.269 37.500 0.00 0.00 0.00 4.30
48 49 5.339008 ACTTGTTGCAGTAGATAATCGGA 57.661 39.130 0.00 0.00 0.00 4.55
49 50 5.351465 ACAACTTGTTGCAGTAGATAATCGG 59.649 40.000 12.76 0.00 0.00 4.18
50 51 6.243551 CACAACTTGTTGCAGTAGATAATCG 58.756 40.000 12.76 0.00 0.00 3.34
51 52 6.024049 GCACAACTTGTTGCAGTAGATAATC 58.976 40.000 12.76 0.00 0.00 1.75
52 53 5.106157 GGCACAACTTGTTGCAGTAGATAAT 60.106 40.000 12.76 0.00 0.00 1.28
53 54 4.215399 GGCACAACTTGTTGCAGTAGATAA 59.785 41.667 12.76 0.00 0.00 1.75
54 55 3.751175 GGCACAACTTGTTGCAGTAGATA 59.249 43.478 12.76 0.00 0.00 1.98
55 56 2.554032 GGCACAACTTGTTGCAGTAGAT 59.446 45.455 12.76 0.00 0.00 1.98
56 57 1.946768 GGCACAACTTGTTGCAGTAGA 59.053 47.619 12.76 0.00 0.00 2.59
57 58 1.001378 GGGCACAACTTGTTGCAGTAG 60.001 52.381 12.76 1.12 0.00 2.57
58 59 1.028905 GGGCACAACTTGTTGCAGTA 58.971 50.000 12.76 0.00 0.00 2.74
59 60 1.815866 GGGCACAACTTGTTGCAGT 59.184 52.632 12.76 0.00 0.00 4.40
60 61 1.299316 CGGGCACAACTTGTTGCAG 60.299 57.895 12.76 7.58 0.00 4.41
61 62 2.780094 CCGGGCACAACTTGTTGCA 61.780 57.895 12.76 0.00 0.00 4.08
62 63 2.027460 CCGGGCACAACTTGTTGC 59.973 61.111 12.76 4.23 0.00 4.17
63 64 2.027460 GCCGGGCACAACTTGTTG 59.973 61.111 15.62 11.44 0.00 3.33
64 65 3.223589 GGCCGGGCACAACTTGTT 61.224 61.111 25.33 0.00 0.00 2.83
66 67 4.974721 AGGGCCGGGCACAACTTG 62.975 66.667 30.95 0.00 32.33 3.16
67 68 4.974721 CAGGGCCGGGCACAACTT 62.975 66.667 30.95 0.00 32.33 2.66
83 84 2.921853 TTATCGCCTCTCCCTCGCCA 62.922 60.000 0.00 0.00 0.00 5.69
84 85 1.536943 ATTATCGCCTCTCCCTCGCC 61.537 60.000 0.00 0.00 0.00 5.54
85 86 0.389166 CATTATCGCCTCTCCCTCGC 60.389 60.000 0.00 0.00 0.00 5.03
86 87 0.244994 CCATTATCGCCTCTCCCTCG 59.755 60.000 0.00 0.00 0.00 4.63
87 88 1.001406 CACCATTATCGCCTCTCCCTC 59.999 57.143 0.00 0.00 0.00 4.30
88 89 1.051812 CACCATTATCGCCTCTCCCT 58.948 55.000 0.00 0.00 0.00 4.20
89 90 0.035458 CCACCATTATCGCCTCTCCC 59.965 60.000 0.00 0.00 0.00 4.30
90 91 0.759346 ACCACCATTATCGCCTCTCC 59.241 55.000 0.00 0.00 0.00 3.71
91 92 1.871080 CACCACCATTATCGCCTCTC 58.129 55.000 0.00 0.00 0.00 3.20
92 93 0.179045 GCACCACCATTATCGCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
93 94 1.498865 CGCACCACCATTATCGCCTC 61.499 60.000 0.00 0.00 0.00 4.70
94 95 1.523711 CGCACCACCATTATCGCCT 60.524 57.895 0.00 0.00 0.00 5.52
95 96 3.022287 CGCACCACCATTATCGCC 58.978 61.111 0.00 0.00 0.00 5.54
96 97 2.327940 GCGCACCACCATTATCGC 59.672 61.111 0.30 0.00 35.82 4.58
97 98 1.095228 AAGGCGCACCACCATTATCG 61.095 55.000 10.83 0.00 39.06 2.92
98 99 0.663153 GAAGGCGCACCACCATTATC 59.337 55.000 10.83 0.00 39.06 1.75
99 100 1.095228 CGAAGGCGCACCACCATTAT 61.095 55.000 10.83 0.00 39.06 1.28
100 101 1.743623 CGAAGGCGCACCACCATTA 60.744 57.895 10.83 0.00 39.06 1.90
101 102 3.055719 CGAAGGCGCACCACCATT 61.056 61.111 10.83 0.00 39.06 3.16
114 115 1.208614 GCACTGAAGCAAGCCGAAG 59.791 57.895 0.00 0.00 0.00 3.79
115 116 0.819259 AAGCACTGAAGCAAGCCGAA 60.819 50.000 0.00 0.00 36.85 4.30
116 117 1.227943 AAGCACTGAAGCAAGCCGA 60.228 52.632 0.00 0.00 36.85 5.54
117 118 1.081641 CAAGCACTGAAGCAAGCCG 60.082 57.895 0.00 0.00 36.85 5.52
118 119 1.198637 CTACAAGCACTGAAGCAAGCC 59.801 52.381 0.00 0.00 36.85 4.35
119 120 1.876156 ACTACAAGCACTGAAGCAAGC 59.124 47.619 0.00 0.00 36.85 4.01
120 121 2.156504 CGACTACAAGCACTGAAGCAAG 59.843 50.000 0.00 0.00 36.85 4.01
121 122 2.135139 CGACTACAAGCACTGAAGCAA 58.865 47.619 0.00 0.00 36.85 3.91
122 123 1.068588 ACGACTACAAGCACTGAAGCA 59.931 47.619 0.00 0.00 36.85 3.91
123 124 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
124 125 2.726760 GTGACGACTACAAGCACTGAAG 59.273 50.000 0.00 0.00 0.00 3.02
125 126 2.361119 AGTGACGACTACAAGCACTGAA 59.639 45.455 0.00 0.00 38.30 3.02
126 127 1.954382 AGTGACGACTACAAGCACTGA 59.046 47.619 0.00 0.00 38.30 3.41
127 128 2.423926 AGTGACGACTACAAGCACTG 57.576 50.000 0.00 0.00 38.30 3.66
128 129 2.488545 CCTAGTGACGACTACAAGCACT 59.511 50.000 0.00 0.00 42.04 4.40
129 130 2.228343 ACCTAGTGACGACTACAAGCAC 59.772 50.000 0.00 0.00 33.21 4.40
130 131 2.228103 CACCTAGTGACGACTACAAGCA 59.772 50.000 0.00 0.00 35.23 3.91
131 132 2.415625 CCACCTAGTGACGACTACAAGC 60.416 54.545 0.00 0.00 35.23 4.01
132 133 2.818432 ACCACCTAGTGACGACTACAAG 59.182 50.000 0.00 0.00 35.23 3.16
133 134 2.816087 GACCACCTAGTGACGACTACAA 59.184 50.000 0.00 0.00 35.23 2.41
134 135 2.039480 AGACCACCTAGTGACGACTACA 59.961 50.000 0.00 0.00 35.23 2.74
135 136 2.709213 AGACCACCTAGTGACGACTAC 58.291 52.381 0.00 0.00 35.23 2.73
136 137 3.677148 CGTAGACCACCTAGTGACGACTA 60.677 52.174 0.00 0.00 33.83 2.59
137 138 2.709213 GTAGACCACCTAGTGACGACT 58.291 52.381 0.00 0.00 35.23 4.18
138 139 1.396301 CGTAGACCACCTAGTGACGAC 59.604 57.143 0.00 0.00 33.83 4.34
139 140 1.276138 TCGTAGACCACCTAGTGACGA 59.724 52.381 5.58 5.58 36.96 4.20
140 141 1.730501 TCGTAGACCACCTAGTGACG 58.269 55.000 0.00 0.00 35.23 4.35
141 142 3.946558 AGATTCGTAGACCACCTAGTGAC 59.053 47.826 0.00 0.00 32.70 3.67
142 143 3.945921 CAGATTCGTAGACCACCTAGTGA 59.054 47.826 0.00 0.00 32.70 3.41
143 144 3.489398 GCAGATTCGTAGACCACCTAGTG 60.489 52.174 0.00 0.00 34.32 2.74
144 145 2.688958 GCAGATTCGTAGACCACCTAGT 59.311 50.000 0.00 0.00 34.32 2.57
145 146 2.688446 TGCAGATTCGTAGACCACCTAG 59.312 50.000 0.00 0.00 34.32 3.02
146 147 2.730382 TGCAGATTCGTAGACCACCTA 58.270 47.619 0.00 0.00 34.32 3.08
147 148 1.557099 TGCAGATTCGTAGACCACCT 58.443 50.000 0.00 0.00 34.32 4.00
148 149 2.205074 CATGCAGATTCGTAGACCACC 58.795 52.381 0.00 0.00 34.32 4.61
149 150 2.893637 ACATGCAGATTCGTAGACCAC 58.106 47.619 0.00 0.00 34.32 4.16
150 151 4.729227 TTACATGCAGATTCGTAGACCA 57.271 40.909 0.00 0.00 34.32 4.02
151 152 6.604735 AAATTACATGCAGATTCGTAGACC 57.395 37.500 0.00 0.00 34.32 3.85
175 176 8.225107 GCAGTACAACGAACACAAGAAATAATA 58.775 33.333 0.00 0.00 0.00 0.98
176 177 7.075741 GCAGTACAACGAACACAAGAAATAAT 58.924 34.615 0.00 0.00 0.00 1.28
177 178 6.423862 GCAGTACAACGAACACAAGAAATAA 58.576 36.000 0.00 0.00 0.00 1.40
178 179 5.049954 GGCAGTACAACGAACACAAGAAATA 60.050 40.000 0.00 0.00 0.00 1.40
179 180 4.261031 GGCAGTACAACGAACACAAGAAAT 60.261 41.667 0.00 0.00 0.00 2.17
180 181 3.064271 GGCAGTACAACGAACACAAGAAA 59.936 43.478 0.00 0.00 0.00 2.52
181 182 2.610374 GGCAGTACAACGAACACAAGAA 59.390 45.455 0.00 0.00 0.00 2.52
182 183 2.206750 GGCAGTACAACGAACACAAGA 58.793 47.619 0.00 0.00 0.00 3.02
183 184 1.937223 TGGCAGTACAACGAACACAAG 59.063 47.619 0.00 0.00 0.00 3.16
184 185 2.025589 TGGCAGTACAACGAACACAA 57.974 45.000 0.00 0.00 0.00 3.33
185 186 1.870402 CATGGCAGTACAACGAACACA 59.130 47.619 0.00 0.00 0.00 3.72
186 187 2.139917 TCATGGCAGTACAACGAACAC 58.860 47.619 0.00 0.00 0.00 3.32
187 188 2.535012 TCATGGCAGTACAACGAACA 57.465 45.000 0.00 0.00 0.00 3.18
188 189 2.029244 CGATCATGGCAGTACAACGAAC 59.971 50.000 0.00 0.00 0.00 3.95
189 190 2.094442 TCGATCATGGCAGTACAACGAA 60.094 45.455 0.00 0.00 0.00 3.85
190 191 1.474879 TCGATCATGGCAGTACAACGA 59.525 47.619 0.00 0.00 0.00 3.85
191 192 1.921243 TCGATCATGGCAGTACAACG 58.079 50.000 0.00 0.00 0.00 4.10
192 193 3.521560 TCTTCGATCATGGCAGTACAAC 58.478 45.455 0.00 0.00 0.00 3.32
193 194 3.885724 TCTTCGATCATGGCAGTACAA 57.114 42.857 0.00 0.00 0.00 2.41
194 195 5.069119 ACTTATCTTCGATCATGGCAGTACA 59.931 40.000 0.00 0.00 0.00 2.90
195 196 5.533482 ACTTATCTTCGATCATGGCAGTAC 58.467 41.667 0.00 0.00 0.00 2.73
196 197 5.791336 ACTTATCTTCGATCATGGCAGTA 57.209 39.130 0.00 0.00 0.00 2.74
197 198 4.679373 ACTTATCTTCGATCATGGCAGT 57.321 40.909 0.00 0.00 0.00 4.40
198 199 6.018589 TCTACTTATCTTCGATCATGGCAG 57.981 41.667 0.00 0.00 0.00 4.85
199 200 6.596309 ATCTACTTATCTTCGATCATGGCA 57.404 37.500 0.00 0.00 0.00 4.92
200 201 7.093354 TCAATCTACTTATCTTCGATCATGGC 58.907 38.462 0.00 0.00 0.00 4.40
201 202 9.481340 TTTCAATCTACTTATCTTCGATCATGG 57.519 33.333 0.00 0.00 0.00 3.66
207 208 9.355215 GTGAACTTTCAATCTACTTATCTTCGA 57.645 33.333 0.00 0.00 39.21 3.71
208 209 8.596380 GGTGAACTTTCAATCTACTTATCTTCG 58.404 37.037 0.00 0.00 39.21 3.79
209 210 8.596380 CGGTGAACTTTCAATCTACTTATCTTC 58.404 37.037 0.00 0.00 39.21 2.87
210 211 8.311836 TCGGTGAACTTTCAATCTACTTATCTT 58.688 33.333 0.00 0.00 39.21 2.40
211 212 7.837863 TCGGTGAACTTTCAATCTACTTATCT 58.162 34.615 0.00 0.00 39.21 1.98
212 213 8.649973 ATCGGTGAACTTTCAATCTACTTATC 57.350 34.615 0.00 0.00 39.21 1.75
214 215 9.932207 TTTATCGGTGAACTTTCAATCTACTTA 57.068 29.630 0.00 0.00 39.21 2.24
215 216 8.842358 TTTATCGGTGAACTTTCAATCTACTT 57.158 30.769 0.00 0.00 39.21 2.24
216 217 8.311836 TCTTTATCGGTGAACTTTCAATCTACT 58.688 33.333 0.00 0.00 39.21 2.57
217 218 8.475331 TCTTTATCGGTGAACTTTCAATCTAC 57.525 34.615 0.00 0.00 39.21 2.59
218 219 9.151471 CTTCTTTATCGGTGAACTTTCAATCTA 57.849 33.333 0.00 0.00 39.21 1.98
219 220 7.878127 TCTTCTTTATCGGTGAACTTTCAATCT 59.122 33.333 0.00 0.00 39.21 2.40
220 221 8.029642 TCTTCTTTATCGGTGAACTTTCAATC 57.970 34.615 0.00 0.00 39.21 2.67
221 222 7.979444 TCTTCTTTATCGGTGAACTTTCAAT 57.021 32.000 0.00 0.00 39.21 2.57
222 223 7.713507 TCTTCTTCTTTATCGGTGAACTTTCAA 59.286 33.333 0.00 0.00 39.21 2.69
223 224 7.214381 TCTTCTTCTTTATCGGTGAACTTTCA 58.786 34.615 0.00 0.00 34.20 2.69
224 225 7.653767 TCTTCTTCTTTATCGGTGAACTTTC 57.346 36.000 0.00 0.00 0.00 2.62
225 226 8.446599 TTTCTTCTTCTTTATCGGTGAACTTT 57.553 30.769 0.00 0.00 0.00 2.66
226 227 7.715686 ACTTTCTTCTTCTTTATCGGTGAACTT 59.284 33.333 0.00 0.00 0.00 2.66
227 228 7.217906 ACTTTCTTCTTCTTTATCGGTGAACT 58.782 34.615 0.00 0.00 0.00 3.01
228 229 7.422878 ACTTTCTTCTTCTTTATCGGTGAAC 57.577 36.000 0.00 0.00 0.00 3.18
229 230 8.342634 CAAACTTTCTTCTTCTTTATCGGTGAA 58.657 33.333 0.00 0.00 0.00 3.18
230 231 7.519970 GCAAACTTTCTTCTTCTTTATCGGTGA 60.520 37.037 0.00 0.00 0.00 4.02
231 232 6.578919 GCAAACTTTCTTCTTCTTTATCGGTG 59.421 38.462 0.00 0.00 0.00 4.94
232 233 6.262273 TGCAAACTTTCTTCTTCTTTATCGGT 59.738 34.615 0.00 0.00 0.00 4.69
233 234 6.668323 TGCAAACTTTCTTCTTCTTTATCGG 58.332 36.000 0.00 0.00 0.00 4.18
234 235 7.986426 GTTGCAAACTTTCTTCTTCTTTATCG 58.014 34.615 0.00 0.00 45.32 2.92
250 251 7.592938 TTTCTCATCGAAATATGTTGCAAACT 58.407 30.769 0.00 0.00 41.14 2.66
282 283 7.254795 CGAAACAAACAGGGCCTAAGAATATAG 60.255 40.741 5.28 0.00 0.00 1.31
285 286 4.698304 CGAAACAAACAGGGCCTAAGAATA 59.302 41.667 5.28 0.00 0.00 1.75
289 290 1.539827 CCGAAACAAACAGGGCCTAAG 59.460 52.381 5.28 0.00 0.00 2.18
290 291 1.611519 CCGAAACAAACAGGGCCTAA 58.388 50.000 5.28 0.00 0.00 2.69
291 292 0.891904 GCCGAAACAAACAGGGCCTA 60.892 55.000 5.28 0.00 37.82 3.93
292 293 2.200337 GCCGAAACAAACAGGGCCT 61.200 57.895 0.00 0.00 37.82 5.19
293 294 1.744320 AAGCCGAAACAAACAGGGCC 61.744 55.000 0.00 0.00 44.82 5.80
294 295 0.104120 AAAGCCGAAACAAACAGGGC 59.896 50.000 0.00 0.00 44.07 5.19
295 296 2.200899 CAAAAGCCGAAACAAACAGGG 58.799 47.619 0.00 0.00 0.00 4.45
296 297 1.592543 GCAAAAGCCGAAACAAACAGG 59.407 47.619 0.00 0.00 0.00 4.00
297 298 2.539476 AGCAAAAGCCGAAACAAACAG 58.461 42.857 0.00 0.00 0.00 3.16
298 299 2.663826 AGCAAAAGCCGAAACAAACA 57.336 40.000 0.00 0.00 0.00 2.83
299 300 3.000222 CAGAAGCAAAAGCCGAAACAAAC 60.000 43.478 0.00 0.00 0.00 2.93
300 301 3.186119 CAGAAGCAAAAGCCGAAACAAA 58.814 40.909 0.00 0.00 0.00 2.83
301 302 2.808244 CAGAAGCAAAAGCCGAAACAA 58.192 42.857 0.00 0.00 0.00 2.83
302 303 1.535860 GCAGAAGCAAAAGCCGAAACA 60.536 47.619 0.00 0.00 41.58 2.83
303 304 1.131771 GCAGAAGCAAAAGCCGAAAC 58.868 50.000 0.00 0.00 41.58 2.78
304 305 1.032014 AGCAGAAGCAAAAGCCGAAA 58.968 45.000 0.00 0.00 45.49 3.46
305 306 1.032014 AAGCAGAAGCAAAAGCCGAA 58.968 45.000 0.00 0.00 45.49 4.30
306 307 1.032014 AAAGCAGAAGCAAAAGCCGA 58.968 45.000 0.00 0.00 45.49 5.54
307 308 1.523934 CAAAAGCAGAAGCAAAAGCCG 59.476 47.619 0.00 0.00 45.49 5.52
308 309 1.262417 GCAAAAGCAGAAGCAAAAGCC 59.738 47.619 0.00 0.00 45.49 4.35
309 310 1.935199 TGCAAAAGCAGAAGCAAAAGC 59.065 42.857 0.00 0.00 45.49 3.51
313 314 2.965572 AGTTGCAAAAGCAGAAGCAA 57.034 40.000 0.00 0.00 45.49 3.91
314 315 2.965572 AAGTTGCAAAAGCAGAAGCA 57.034 40.000 0.00 0.00 45.49 3.91
315 316 3.001634 GGAAAAGTTGCAAAAGCAGAAGC 59.998 43.478 0.00 0.00 42.56 3.86
316 317 4.183101 TGGAAAAGTTGCAAAAGCAGAAG 58.817 39.130 0.00 0.00 0.00 2.85
317 318 4.199432 TGGAAAAGTTGCAAAAGCAGAA 57.801 36.364 0.00 0.00 0.00 3.02
318 319 3.883830 TGGAAAAGTTGCAAAAGCAGA 57.116 38.095 0.00 0.00 0.00 4.26
319 320 5.488645 AAATGGAAAAGTTGCAAAAGCAG 57.511 34.783 0.00 0.00 33.68 4.24
320 321 5.392811 CCAAAATGGAAAAGTTGCAAAAGCA 60.393 36.000 0.00 0.00 40.96 3.91
321 322 5.036090 CCAAAATGGAAAAGTTGCAAAAGC 58.964 37.500 0.00 0.00 40.96 3.51
322 323 5.036090 GCCAAAATGGAAAAGTTGCAAAAG 58.964 37.500 0.00 0.00 40.96 2.27
323 324 4.142293 GGCCAAAATGGAAAAGTTGCAAAA 60.142 37.500 0.00 0.00 40.96 2.44
324 325 3.379688 GGCCAAAATGGAAAAGTTGCAAA 59.620 39.130 0.00 0.00 40.96 3.68
325 326 2.948315 GGCCAAAATGGAAAAGTTGCAA 59.052 40.909 0.00 0.00 40.96 4.08
326 327 2.092753 TGGCCAAAATGGAAAAGTTGCA 60.093 40.909 0.61 0.00 40.96 4.08
327 328 2.570135 TGGCCAAAATGGAAAAGTTGC 58.430 42.857 0.61 0.00 40.96 4.17
328 329 5.573337 TTTTGGCCAAAATGGAAAAGTTG 57.427 34.783 34.56 0.00 40.96 3.16
329 330 5.394005 GCTTTTTGGCCAAAATGGAAAAGTT 60.394 36.000 37.75 0.00 40.96 2.66
330 331 4.097741 GCTTTTTGGCCAAAATGGAAAAGT 59.902 37.500 37.75 0.00 40.96 2.66
331 332 4.609947 GCTTTTTGGCCAAAATGGAAAAG 58.390 39.130 37.75 31.40 40.96 2.27
332 333 4.645762 GCTTTTTGGCCAAAATGGAAAA 57.354 36.364 37.75 25.68 40.96 2.29
344 345 3.002791 GGAGCTTTTATGGCTTTTTGGC 58.997 45.455 0.00 0.00 40.40 4.52
345 346 4.541973 AGGAGCTTTTATGGCTTTTTGG 57.458 40.909 0.00 0.00 40.40 3.28
346 347 9.305925 CTATTTAGGAGCTTTTATGGCTTTTTG 57.694 33.333 0.00 0.00 40.40 2.44
347 348 8.478066 CCTATTTAGGAGCTTTTATGGCTTTTT 58.522 33.333 0.00 0.00 46.63 1.94
348 349 7.619698 ACCTATTTAGGAGCTTTTATGGCTTTT 59.380 33.333 10.61 0.00 46.63 2.27
349 350 7.068716 CACCTATTTAGGAGCTTTTATGGCTTT 59.931 37.037 10.61 0.00 46.63 3.51
350 351 6.547510 CACCTATTTAGGAGCTTTTATGGCTT 59.452 38.462 10.61 0.00 46.63 4.35
351 352 6.064717 CACCTATTTAGGAGCTTTTATGGCT 58.935 40.000 10.61 0.00 46.63 4.75
352 353 6.319141 CACCTATTTAGGAGCTTTTATGGC 57.681 41.667 10.61 0.00 46.63 4.40
362 363 3.954258 CCCCAAAAGCACCTATTTAGGAG 59.046 47.826 10.61 3.78 46.63 3.69
363 364 3.880117 GCCCCAAAAGCACCTATTTAGGA 60.880 47.826 10.61 0.00 46.63 2.94
365 366 3.365472 AGCCCCAAAAGCACCTATTTAG 58.635 45.455 0.00 0.00 0.00 1.85
366 367 3.466395 AGCCCCAAAAGCACCTATTTA 57.534 42.857 0.00 0.00 0.00 1.40
367 368 2.325661 AGCCCCAAAAGCACCTATTT 57.674 45.000 0.00 0.00 0.00 1.40
368 369 2.325661 AAGCCCCAAAAGCACCTATT 57.674 45.000 0.00 0.00 0.00 1.73
369 370 2.325661 AAAGCCCCAAAAGCACCTAT 57.674 45.000 0.00 0.00 0.00 2.57
370 371 2.095604 AAAAGCCCCAAAAGCACCTA 57.904 45.000 0.00 0.00 0.00 3.08
371 372 2.095604 TAAAAGCCCCAAAAGCACCT 57.904 45.000 0.00 0.00 0.00 4.00
372 373 2.615240 CCATAAAAGCCCCAAAAGCACC 60.615 50.000 0.00 0.00 0.00 5.01
373 374 2.698803 CCATAAAAGCCCCAAAAGCAC 58.301 47.619 0.00 0.00 0.00 4.40
374 375 1.003003 GCCATAAAAGCCCCAAAAGCA 59.997 47.619 0.00 0.00 0.00 3.91
375 376 1.278985 AGCCATAAAAGCCCCAAAAGC 59.721 47.619 0.00 0.00 0.00 3.51
376 377 3.701205 AAGCCATAAAAGCCCCAAAAG 57.299 42.857 0.00 0.00 0.00 2.27
377 378 4.140536 CAAAAGCCATAAAAGCCCCAAAA 58.859 39.130 0.00 0.00 0.00 2.44
378 379 3.392616 TCAAAAGCCATAAAAGCCCCAAA 59.607 39.130 0.00 0.00 0.00 3.28
379 380 2.975489 TCAAAAGCCATAAAAGCCCCAA 59.025 40.909 0.00 0.00 0.00 4.12
380 381 2.614259 TCAAAAGCCATAAAAGCCCCA 58.386 42.857 0.00 0.00 0.00 4.96
381 382 3.197549 TCATCAAAAGCCATAAAAGCCCC 59.802 43.478 0.00 0.00 0.00 5.80
382 383 4.470334 TCATCAAAAGCCATAAAAGCCC 57.530 40.909 0.00 0.00 0.00 5.19
383 384 4.631377 GGTTCATCAAAAGCCATAAAAGCC 59.369 41.667 0.00 0.00 0.00 4.35
384 385 5.237048 TGGTTCATCAAAAGCCATAAAAGC 58.763 37.500 0.00 0.00 0.00 3.51
385 386 7.910441 ATTGGTTCATCAAAAGCCATAAAAG 57.090 32.000 0.00 0.00 0.00 2.27
389 390 9.194972 TGTTATATTGGTTCATCAAAAGCCATA 57.805 29.630 0.00 0.00 0.00 2.74
390 391 8.076910 TGTTATATTGGTTCATCAAAAGCCAT 57.923 30.769 0.00 0.00 0.00 4.40
391 392 7.473735 TGTTATATTGGTTCATCAAAAGCCA 57.526 32.000 0.00 0.00 0.00 4.75
392 393 8.947055 ATTGTTATATTGGTTCATCAAAAGCC 57.053 30.769 0.00 0.00 0.00 4.35
424 425 7.454260 AACTTCTAAATAGGTGCTTTTGGAG 57.546 36.000 0.00 0.00 0.00 3.86
425 426 7.833285 AAACTTCTAAATAGGTGCTTTTGGA 57.167 32.000 0.00 0.00 0.00 3.53
426 427 8.764287 CAAAAACTTCTAAATAGGTGCTTTTGG 58.236 33.333 0.00 0.00 0.00 3.28
427 428 9.313118 ACAAAAACTTCTAAATAGGTGCTTTTG 57.687 29.630 13.75 13.75 36.56 2.44
428 429 9.313118 CACAAAAACTTCTAAATAGGTGCTTTT 57.687 29.630 0.00 0.00 0.00 2.27
429 430 7.926018 CCACAAAAACTTCTAAATAGGTGCTTT 59.074 33.333 0.00 0.00 0.00 3.51
430 431 7.433680 CCACAAAAACTTCTAAATAGGTGCTT 58.566 34.615 0.00 0.00 0.00 3.91
431 432 6.516693 GCCACAAAAACTTCTAAATAGGTGCT 60.517 38.462 0.00 0.00 0.00 4.40
432 433 5.633601 GCCACAAAAACTTCTAAATAGGTGC 59.366 40.000 0.00 0.00 0.00 5.01
433 434 6.981722 AGCCACAAAAACTTCTAAATAGGTG 58.018 36.000 0.00 0.00 0.00 4.00
434 435 7.597288 AAGCCACAAAAACTTCTAAATAGGT 57.403 32.000 0.00 0.00 0.00 3.08
435 436 8.887036 AAAAGCCACAAAAACTTCTAAATAGG 57.113 30.769 0.00 0.00 0.00 2.57
437 438 9.877178 TCAAAAAGCCACAAAAACTTCTAAATA 57.123 25.926 0.00 0.00 0.00 1.40
438 439 8.664798 GTCAAAAAGCCACAAAAACTTCTAAAT 58.335 29.630 0.00 0.00 0.00 1.40
439 440 7.148722 CGTCAAAAAGCCACAAAAACTTCTAAA 60.149 33.333 0.00 0.00 0.00 1.85
440 441 6.309251 CGTCAAAAAGCCACAAAAACTTCTAA 59.691 34.615 0.00 0.00 0.00 2.10
441 442 5.802956 CGTCAAAAAGCCACAAAAACTTCTA 59.197 36.000 0.00 0.00 0.00 2.10
442 443 4.625311 CGTCAAAAAGCCACAAAAACTTCT 59.375 37.500 0.00 0.00 0.00 2.85
443 444 4.623595 TCGTCAAAAAGCCACAAAAACTTC 59.376 37.500 0.00 0.00 0.00 3.01
444 445 4.561105 TCGTCAAAAAGCCACAAAAACTT 58.439 34.783 0.00 0.00 0.00 2.66
445 446 4.181309 TCGTCAAAAAGCCACAAAAACT 57.819 36.364 0.00 0.00 0.00 2.66
446 447 4.912528 TTCGTCAAAAAGCCACAAAAAC 57.087 36.364 0.00 0.00 0.00 2.43
447 448 4.991687 ACTTTCGTCAAAAAGCCACAAAAA 59.008 33.333 0.00 0.00 39.39 1.94
448 449 4.387256 CACTTTCGTCAAAAAGCCACAAAA 59.613 37.500 0.00 0.00 39.39 2.44
449 450 3.923461 CACTTTCGTCAAAAAGCCACAAA 59.077 39.130 0.00 0.00 39.39 2.83
450 451 3.191581 TCACTTTCGTCAAAAAGCCACAA 59.808 39.130 0.00 0.00 39.39 3.33
451 452 2.750166 TCACTTTCGTCAAAAAGCCACA 59.250 40.909 0.00 0.00 39.39 4.17
452 453 3.414549 TCACTTTCGTCAAAAAGCCAC 57.585 42.857 0.00 0.00 39.39 5.01
453 454 4.442375 TTTCACTTTCGTCAAAAAGCCA 57.558 36.364 0.00 0.00 39.39 4.75
454 455 5.771602 TTTTTCACTTTCGTCAAAAAGCC 57.228 34.783 0.00 0.00 39.39 4.35
456 457 6.460987 CAGCTTTTTCACTTTCGTCAAAAAG 58.539 36.000 9.11 9.11 43.84 2.27
457 458 5.164002 GCAGCTTTTTCACTTTCGTCAAAAA 60.164 36.000 0.00 0.00 0.00 1.94
458 459 4.326009 GCAGCTTTTTCACTTTCGTCAAAA 59.674 37.500 0.00 0.00 0.00 2.44
459 460 3.857093 GCAGCTTTTTCACTTTCGTCAAA 59.143 39.130 0.00 0.00 0.00 2.69
460 461 3.119673 TGCAGCTTTTTCACTTTCGTCAA 60.120 39.130 0.00 0.00 0.00 3.18
461 462 2.421775 TGCAGCTTTTTCACTTTCGTCA 59.578 40.909 0.00 0.00 0.00 4.35
462 463 3.065019 TGCAGCTTTTTCACTTTCGTC 57.935 42.857 0.00 0.00 0.00 4.20
463 464 3.502191 TTGCAGCTTTTTCACTTTCGT 57.498 38.095 0.00 0.00 0.00 3.85
464 465 4.780013 GCTTTTGCAGCTTTTTCACTTTCG 60.780 41.667 0.00 0.00 46.27 3.46
465 466 4.581493 GCTTTTGCAGCTTTTTCACTTTC 58.419 39.130 0.00 0.00 46.27 2.62
466 467 4.604843 GCTTTTGCAGCTTTTTCACTTT 57.395 36.364 0.00 0.00 46.27 2.66
487 488 5.995055 TGTTTGTTTGGACTTTTGCTTTTG 58.005 33.333 0.00 0.00 0.00 2.44
488 489 6.349197 CCATGTTTGTTTGGACTTTTGCTTTT 60.349 34.615 0.00 0.00 34.81 2.27
489 490 5.123661 CCATGTTTGTTTGGACTTTTGCTTT 59.876 36.000 0.00 0.00 34.81 3.51
490 491 4.635324 CCATGTTTGTTTGGACTTTTGCTT 59.365 37.500 0.00 0.00 34.81 3.91
491 492 4.190772 CCATGTTTGTTTGGACTTTTGCT 58.809 39.130 0.00 0.00 34.81 3.91
492 493 3.312146 CCCATGTTTGTTTGGACTTTTGC 59.688 43.478 0.00 0.00 34.81 3.68
493 494 3.312146 GCCCATGTTTGTTTGGACTTTTG 59.688 43.478 0.00 0.00 34.81 2.44
494 495 3.199727 AGCCCATGTTTGTTTGGACTTTT 59.800 39.130 0.00 0.00 34.81 2.27
495 496 2.771372 AGCCCATGTTTGTTTGGACTTT 59.229 40.909 0.00 0.00 34.81 2.66
496 497 2.397597 AGCCCATGTTTGTTTGGACTT 58.602 42.857 0.00 0.00 34.81 3.01
497 498 2.086610 AGCCCATGTTTGTTTGGACT 57.913 45.000 0.00 0.00 34.81 3.85
498 499 2.908688 AAGCCCATGTTTGTTTGGAC 57.091 45.000 0.00 0.00 34.81 4.02
499 500 3.838565 TCTAAGCCCATGTTTGTTTGGA 58.161 40.909 0.00 0.00 34.81 3.53
500 501 4.599047 TTCTAAGCCCATGTTTGTTTGG 57.401 40.909 0.00 0.00 0.00 3.28
501 502 6.705381 TCATTTTCTAAGCCCATGTTTGTTTG 59.295 34.615 0.00 0.00 0.00 2.93
502 503 6.825610 TCATTTTCTAAGCCCATGTTTGTTT 58.174 32.000 0.00 0.00 0.00 2.83
503 504 6.418057 TCATTTTCTAAGCCCATGTTTGTT 57.582 33.333 0.00 0.00 0.00 2.83
504 505 6.041979 AGTTCATTTTCTAAGCCCATGTTTGT 59.958 34.615 0.00 0.00 0.00 2.83
505 506 6.458210 AGTTCATTTTCTAAGCCCATGTTTG 58.542 36.000 0.00 0.00 0.00 2.93
506 507 6.670695 AGTTCATTTTCTAAGCCCATGTTT 57.329 33.333 0.00 0.00 0.00 2.83
507 508 6.128007 CGTAGTTCATTTTCTAAGCCCATGTT 60.128 38.462 0.00 0.00 0.00 2.71
508 509 5.354234 CGTAGTTCATTTTCTAAGCCCATGT 59.646 40.000 0.00 0.00 0.00 3.21
509 510 5.220854 CCGTAGTTCATTTTCTAAGCCCATG 60.221 44.000 0.00 0.00 0.00 3.66
510 511 4.881850 CCGTAGTTCATTTTCTAAGCCCAT 59.118 41.667 0.00 0.00 0.00 4.00
511 512 4.020039 TCCGTAGTTCATTTTCTAAGCCCA 60.020 41.667 0.00 0.00 0.00 5.36
512 513 4.510571 TCCGTAGTTCATTTTCTAAGCCC 58.489 43.478 0.00 0.00 0.00 5.19
513 514 5.642491 ACTTCCGTAGTTCATTTTCTAAGCC 59.358 40.000 0.00 0.00 31.29 4.35
514 515 6.723131 ACTTCCGTAGTTCATTTTCTAAGC 57.277 37.500 0.00 0.00 31.29 3.09
520 521 7.130303 GAAGCTTACTTCCGTAGTTCATTTT 57.870 36.000 0.00 0.00 45.60 1.82
521 522 6.723131 GAAGCTTACTTCCGTAGTTCATTT 57.277 37.500 0.00 0.00 45.60 2.32
606 1436 1.444553 GTCCTCGGCGACTCTGTTG 60.445 63.158 4.99 0.00 0.00 3.33
613 1443 0.458669 TTTATGGAGTCCTCGGCGAC 59.541 55.000 4.99 0.00 0.00 5.19
614 1444 0.744874 CTTTATGGAGTCCTCGGCGA 59.255 55.000 10.14 10.14 0.00 5.54
635 1487 5.427378 TGCTCATCTAACGATTGAATTCCA 58.573 37.500 2.27 0.00 0.00 3.53
636 1488 5.991328 TGCTCATCTAACGATTGAATTCC 57.009 39.130 2.27 0.00 0.00 3.01
637 1489 6.037610 ACCTTGCTCATCTAACGATTGAATTC 59.962 38.462 0.00 0.00 0.00 2.17
638 1490 5.882557 ACCTTGCTCATCTAACGATTGAATT 59.117 36.000 0.00 0.00 0.00 2.17
639 1491 5.431765 ACCTTGCTCATCTAACGATTGAAT 58.568 37.500 0.00 0.00 0.00 2.57
640 1492 4.832248 ACCTTGCTCATCTAACGATTGAA 58.168 39.130 0.00 0.00 0.00 2.69
641 1493 4.471904 ACCTTGCTCATCTAACGATTGA 57.528 40.909 0.00 0.00 0.00 2.57
642 1494 6.851222 ATTACCTTGCTCATCTAACGATTG 57.149 37.500 0.00 0.00 0.00 2.67
643 1495 8.367911 TGATATTACCTTGCTCATCTAACGATT 58.632 33.333 0.00 0.00 0.00 3.34
644 1496 7.896811 TGATATTACCTTGCTCATCTAACGAT 58.103 34.615 0.00 0.00 0.00 3.73
645 1497 7.284919 TGATATTACCTTGCTCATCTAACGA 57.715 36.000 0.00 0.00 0.00 3.85
714 2884 4.807304 TGAGTAACTGTTCGGTTCAAGAAC 59.193 41.667 4.39 4.39 45.85 3.01
741 2941 3.515562 AGGGTTTGGACAATTATGGCAA 58.484 40.909 0.00 0.00 35.69 4.52
2120 6905 9.811995 CACAAGTCATAATGGAATTGAATTCAT 57.188 29.630 18.55 8.24 43.47 2.57
2154 6945 8.693542 AGAAAACAACATCATTAGCAATTAGC 57.306 30.769 0.00 0.00 46.19 3.09
2157 6948 9.768662 AGAAAGAAAACAACATCATTAGCAATT 57.231 25.926 0.00 0.00 0.00 2.32
2158 6949 9.199982 CAGAAAGAAAACAACATCATTAGCAAT 57.800 29.630 0.00 0.00 0.00 3.56
2197 6988 1.453379 CCTCCCTCAGCTTGGCATG 60.453 63.158 0.00 0.00 0.00 4.06
2199 6990 2.530151 ACCTCCCTCAGCTTGGCA 60.530 61.111 0.00 0.00 0.00 4.92
2311 7102 0.253327 AGCTAGTTAGTGCCCTTGCC 59.747 55.000 0.00 0.00 36.33 4.52
2533 7358 4.860022 ACAAGTATTTGGAATGGAGGGAG 58.140 43.478 2.81 0.00 38.66 4.30
2535 7360 4.860022 AGACAAGTATTTGGAATGGAGGG 58.140 43.478 2.81 0.00 38.66 4.30
2536 7361 6.660949 AGAAAGACAAGTATTTGGAATGGAGG 59.339 38.462 2.81 0.00 38.66 4.30
2537 7362 7.693969 AGAAAGACAAGTATTTGGAATGGAG 57.306 36.000 2.81 0.00 38.66 3.86
2538 7363 7.829211 CCTAGAAAGACAAGTATTTGGAATGGA 59.171 37.037 2.81 0.00 38.66 3.41
2542 7367 6.539173 TGCCTAGAAAGACAAGTATTTGGAA 58.461 36.000 2.81 0.00 38.66 3.53
2543 7368 6.121776 TGCCTAGAAAGACAAGTATTTGGA 57.878 37.500 2.81 0.00 38.66 3.53
2546 7371 9.959721 TTAGAATGCCTAGAAAGACAAGTATTT 57.040 29.630 0.00 0.00 0.00 1.40
2549 7374 9.383519 CATTTAGAATGCCTAGAAAGACAAGTA 57.616 33.333 0.00 0.00 0.00 2.24
2550 7375 7.337942 CCATTTAGAATGCCTAGAAAGACAAGT 59.662 37.037 0.00 0.00 0.00 3.16
2551 7376 7.554118 TCCATTTAGAATGCCTAGAAAGACAAG 59.446 37.037 0.00 0.00 0.00 3.16
2554 7379 7.051000 AGTCCATTTAGAATGCCTAGAAAGAC 58.949 38.462 0.00 0.00 0.00 3.01
2557 7382 7.200434 AGAGTCCATTTAGAATGCCTAGAAA 57.800 36.000 0.00 0.00 0.00 2.52
2558 7383 6.814954 AGAGTCCATTTAGAATGCCTAGAA 57.185 37.500 0.00 0.00 0.00 2.10
2559 7384 9.775539 ATATAGAGTCCATTTAGAATGCCTAGA 57.224 33.333 0.00 0.00 0.00 2.43
2562 7387 8.470805 CGTATATAGAGTCCATTTAGAATGCCT 58.529 37.037 0.00 0.00 0.00 4.75
2563 7388 7.707035 CCGTATATAGAGTCCATTTAGAATGCC 59.293 40.741 0.00 0.00 0.00 4.40
2564 7389 8.467598 TCCGTATATAGAGTCCATTTAGAATGC 58.532 37.037 0.00 0.00 0.00 3.56
2567 7392 8.467598 GCATCCGTATATAGAGTCCATTTAGAA 58.532 37.037 0.00 0.00 0.00 2.10
2569 7394 7.772166 TGCATCCGTATATAGAGTCCATTTAG 58.228 38.462 0.00 0.00 0.00 1.85
2570 7395 7.712204 TGCATCCGTATATAGAGTCCATTTA 57.288 36.000 0.00 0.00 0.00 1.40
2572 7397 6.155221 ACATGCATCCGTATATAGAGTCCATT 59.845 38.462 0.00 0.00 0.00 3.16
2573 7398 5.658634 ACATGCATCCGTATATAGAGTCCAT 59.341 40.000 0.00 0.00 0.00 3.41
2574 7399 5.016831 ACATGCATCCGTATATAGAGTCCA 58.983 41.667 0.00 0.00 0.00 4.02
2575 7400 5.584253 ACATGCATCCGTATATAGAGTCC 57.416 43.478 0.00 0.00 0.00 3.85
2576 7401 7.065923 TGTCTACATGCATCCGTATATAGAGTC 59.934 40.741 0.00 0.00 0.00 3.36
2578 7403 7.321745 TGTCTACATGCATCCGTATATAGAG 57.678 40.000 0.00 0.00 0.00 2.43
2579 7404 7.881775 ATGTCTACATGCATCCGTATATAGA 57.118 36.000 0.00 0.00 34.83 1.98
2582 7407 9.890629 AAAATATGTCTACATGCATCCGTATAT 57.109 29.630 0.00 0.00 37.15 0.86
2584 7409 9.719355 TTAAAATATGTCTACATGCATCCGTAT 57.281 29.630 0.00 0.00 37.15 3.06
2585 7410 9.549078 TTTAAAATATGTCTACATGCATCCGTA 57.451 29.630 0.00 0.00 37.15 4.02
2586 7411 8.445275 TTTAAAATATGTCTACATGCATCCGT 57.555 30.769 0.00 0.00 37.15 4.69
2587 7412 8.559536 ACTTTAAAATATGTCTACATGCATCCG 58.440 33.333 0.00 0.00 37.15 4.18
2588 7413 9.669353 CACTTTAAAATATGTCTACATGCATCC 57.331 33.333 0.00 0.00 37.15 3.51
2612 7501 3.741344 ACGCAAAGTGAGTGAATCTACAC 59.259 43.478 0.00 0.00 40.60 2.90
2614 7503 3.059570 CGACGCAAAGTGAGTGAATCTAC 59.940 47.826 0.00 0.00 28.29 2.59
2616 7505 2.061773 CGACGCAAAGTGAGTGAATCT 58.938 47.619 0.00 0.00 28.29 2.40
2618 7507 1.865865 ACGACGCAAAGTGAGTGAAT 58.134 45.000 0.00 0.00 28.29 2.57
2620 7509 2.287970 ACATACGACGCAAAGTGAGTGA 60.288 45.455 0.00 0.00 28.29 3.41
2621 7510 2.058798 ACATACGACGCAAAGTGAGTG 58.941 47.619 0.00 0.00 28.29 3.51
2625 7514 3.239254 TGACTACATACGACGCAAAGTG 58.761 45.455 0.00 0.00 0.00 3.16
2626 7515 3.564235 TGACTACATACGACGCAAAGT 57.436 42.857 0.00 0.00 0.00 2.66
2630 7519 3.840468 ACAATTGACTACATACGACGCA 58.160 40.909 13.59 0.00 0.00 5.24
2631 7520 4.325204 TCAACAATTGACTACATACGACGC 59.675 41.667 13.59 0.00 34.08 5.19
2632 7521 6.384178 TTCAACAATTGACTACATACGACG 57.616 37.500 13.59 0.00 39.87 5.12
2633 7522 8.656849 AGATTTCAACAATTGACTACATACGAC 58.343 33.333 13.59 0.00 39.87 4.34
2635 7524 8.873830 AGAGATTTCAACAATTGACTACATACG 58.126 33.333 13.59 0.00 39.87 3.06
2643 7532 9.818796 GTCTTTCTAGAGATTTCAACAATTGAC 57.181 33.333 13.59 0.00 39.87 3.18
2647 7536 9.566432 ACTTGTCTTTCTAGAGATTTCAACAAT 57.434 29.630 0.00 0.00 0.00 2.71
2662 7814 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2663 7815 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2664 7816 6.013984 TCCTCCGTTCCTAAATACTTGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
2665 7817 5.482878 TCCTCCGTTCCTAAATACTTGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
2667 7819 5.334724 TCCTCCGTTCCTAAATACTTGTC 57.665 43.478 0.00 0.00 0.00 3.18
2668 7820 5.247792 ACTTCCTCCGTTCCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
2669 7821 5.731591 ACTTCCTCCGTTCCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
2670 7822 7.672122 ATACTTCCTCCGTTCCTAAATACTT 57.328 36.000 0.00 0.00 0.00 2.24
2671 7823 7.672122 AATACTTCCTCCGTTCCTAAATACT 57.328 36.000 0.00 0.00 0.00 2.12
2672 7824 9.993454 ATAAATACTTCCTCCGTTCCTAAATAC 57.007 33.333 0.00 0.00 0.00 1.89
2674 7826 8.711170 TGATAAATACTTCCTCCGTTCCTAAAT 58.289 33.333 0.00 0.00 0.00 1.40
2678 7830 6.555463 TTGATAAATACTTCCTCCGTTCCT 57.445 37.500 0.00 0.00 0.00 3.36
2679 7831 6.238402 GCTTTGATAAATACTTCCTCCGTTCC 60.238 42.308 0.00 0.00 0.00 3.62
2680 7832 6.238402 GGCTTTGATAAATACTTCCTCCGTTC 60.238 42.308 0.00 0.00 0.00 3.95
2681 7833 5.589050 GGCTTTGATAAATACTTCCTCCGTT 59.411 40.000 0.00 0.00 0.00 4.44
2682 7834 5.104485 AGGCTTTGATAAATACTTCCTCCGT 60.104 40.000 0.00 0.00 0.00 4.69
2683 7835 5.368989 AGGCTTTGATAAATACTTCCTCCG 58.631 41.667 0.00 0.00 0.00 4.63
2684 7836 6.828785 TCAAGGCTTTGATAAATACTTCCTCC 59.171 38.462 7.24 0.00 38.37 4.30
2685 7837 7.865706 TCAAGGCTTTGATAAATACTTCCTC 57.134 36.000 7.24 0.00 38.37 3.71
2686 7838 8.689972 CATTCAAGGCTTTGATAAATACTTCCT 58.310 33.333 12.50 0.00 42.60 3.36
2687 7839 8.686334 TCATTCAAGGCTTTGATAAATACTTCC 58.314 33.333 12.50 0.00 42.60 3.46
2691 7843 9.252962 CCATTCATTCAAGGCTTTGATAAATAC 57.747 33.333 12.50 0.00 42.60 1.89
2753 8174 7.831193 AGATGAAACCACATATAAACTCAAGCT 59.169 33.333 0.00 0.00 0.00 3.74
2942 8364 1.061485 GAGAGTTGCCTCGTTTCGAC 58.939 55.000 0.00 0.00 42.86 4.20
2949 8371 1.404851 GGAGGAAAGAGAGTTGCCTCG 60.405 57.143 5.81 0.00 44.71 4.63
2980 8412 6.898912 AGCAAGTTAAGTTACCGTTATAGC 57.101 37.500 0.00 0.00 0.00 2.97
3035 8563 4.640201 CCGTGATTTGGTTGGATCTTGTAT 59.360 41.667 0.00 0.00 0.00 2.29
3063 8591 1.452145 TTTCTTCGGTGCCAAGGTGC 61.452 55.000 0.00 0.00 0.00 5.01
3076 8604 8.976986 AACAAACTATGCAAGATCATTTCTTC 57.023 30.769 0.00 0.00 42.98 2.87
3268 9376 1.688735 TGCCGAATCTAGCTGCATAGT 59.311 47.619 1.02 0.00 0.00 2.12
3289 9397 8.567948 TGTCAATTGAGTTTTAGCCTAAAGAAG 58.432 33.333 8.80 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.