Multiple sequence alignment - TraesCS5B01G497100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G497100 | chr5B | 100.000 | 7059 | 0 | 0 | 1 | 7059 | 664028258 | 664021200 | 0.000000e+00 | 13036 |
1 | TraesCS5B01G497100 | chr5B | 91.715 | 857 | 63 | 7 | 43 | 895 | 657200176 | 657201028 | 0.000000e+00 | 1182 |
2 | TraesCS5B01G497100 | chr5D | 94.014 | 2957 | 114 | 20 | 843 | 3769 | 527503831 | 527500908 | 0.000000e+00 | 4421 |
3 | TraesCS5B01G497100 | chr5D | 91.594 | 1713 | 75 | 31 | 5384 | 7057 | 527499259 | 527497577 | 0.000000e+00 | 2302 |
4 | TraesCS5B01G497100 | chr5D | 95.099 | 1367 | 45 | 6 | 4024 | 5385 | 527500640 | 527499291 | 0.000000e+00 | 2134 |
5 | TraesCS5B01G497100 | chr5D | 94.932 | 809 | 38 | 2 | 43 | 850 | 527506017 | 527505211 | 0.000000e+00 | 1264 |
6 | TraesCS5B01G497100 | chr5D | 97.740 | 177 | 4 | 0 | 3766 | 3942 | 527500815 | 527500639 | 8.900000e-79 | 305 |
7 | TraesCS5B01G497100 | chr5A | 94.267 | 2250 | 67 | 14 | 1707 | 3942 | 654622289 | 654620088 | 0.000000e+00 | 3384 |
8 | TraesCS5B01G497100 | chr5A | 95.780 | 1019 | 36 | 5 | 5384 | 6401 | 654618423 | 654617411 | 0.000000e+00 | 1637 |
9 | TraesCS5B01G497100 | chr5A | 95.186 | 644 | 24 | 4 | 4674 | 5313 | 654619385 | 654618745 | 0.000000e+00 | 1011 |
10 | TraesCS5B01G497100 | chr5A | 94.817 | 656 | 14 | 5 | 4024 | 4675 | 654620089 | 654619450 | 0.000000e+00 | 1005 |
11 | TraesCS5B01G497100 | chr5A | 90.507 | 769 | 44 | 15 | 956 | 1712 | 654623118 | 654622367 | 0.000000e+00 | 989 |
12 | TraesCS5B01G497100 | chr5A | 91.085 | 673 | 27 | 7 | 6406 | 7050 | 654617433 | 654616766 | 0.000000e+00 | 880 |
13 | TraesCS5B01G497100 | chr5A | 94.000 | 100 | 3 | 3 | 3929 | 4025 | 505609581 | 505609680 | 1.590000e-31 | 148 |
14 | TraesCS5B01G497100 | chr1D | 92.532 | 857 | 58 | 6 | 43 | 895 | 403063127 | 403062273 | 0.000000e+00 | 1223 |
15 | TraesCS5B01G497100 | chr1D | 94.845 | 97 | 4 | 1 | 3931 | 4027 | 295954309 | 295954214 | 4.410000e-32 | 150 |
16 | TraesCS5B01G497100 | chr3D | 92.065 | 857 | 62 | 6 | 43 | 895 | 591110643 | 591109789 | 0.000000e+00 | 1201 |
17 | TraesCS5B01G497100 | chr3A | 92.155 | 854 | 60 | 7 | 46 | 895 | 634079254 | 634078404 | 0.000000e+00 | 1199 |
18 | TraesCS5B01G497100 | chr3A | 92.467 | 531 | 38 | 2 | 43 | 572 | 595775692 | 595776221 | 0.000000e+00 | 758 |
19 | TraesCS5B01G497100 | chr1A | 92.047 | 855 | 60 | 6 | 43 | 895 | 585642345 | 585641497 | 0.000000e+00 | 1195 |
20 | TraesCS5B01G497100 | chr1A | 91.365 | 857 | 68 | 6 | 43 | 895 | 590117973 | 590117119 | 0.000000e+00 | 1168 |
21 | TraesCS5B01G497100 | chr1A | 90.946 | 497 | 42 | 3 | 43 | 537 | 543489844 | 543490339 | 0.000000e+00 | 665 |
22 | TraesCS5B01G497100 | chr2D | 84.802 | 454 | 63 | 6 | 447 | 895 | 137558123 | 137558575 | 1.080000e-122 | 451 |
23 | TraesCS5B01G497100 | chr2D | 94.000 | 100 | 4 | 2 | 3927 | 4025 | 53145713 | 53145811 | 4.410000e-32 | 150 |
24 | TraesCS5B01G497100 | chr7B | 75.910 | 797 | 165 | 27 | 57 | 839 | 544130854 | 544130071 | 4.000000e-102 | 383 |
25 | TraesCS5B01G497100 | chr7B | 93.750 | 112 | 6 | 1 | 2864 | 2974 | 357651486 | 357651597 | 4.380000e-37 | 167 |
26 | TraesCS5B01G497100 | chr3B | 93.578 | 109 | 6 | 1 | 2860 | 2968 | 672778077 | 672778184 | 2.040000e-35 | 161 |
27 | TraesCS5B01G497100 | chr6D | 90.678 | 118 | 9 | 2 | 2854 | 2970 | 391925993 | 391925877 | 9.480000e-34 | 156 |
28 | TraesCS5B01G497100 | chr6D | 89.916 | 119 | 7 | 5 | 2852 | 2968 | 317078777 | 317078892 | 1.590000e-31 | 148 |
29 | TraesCS5B01G497100 | chr6D | 92.233 | 103 | 6 | 2 | 3933 | 4033 | 17316617 | 17316719 | 2.050000e-30 | 145 |
30 | TraesCS5B01G497100 | chr6B | 90.678 | 118 | 7 | 4 | 2852 | 2968 | 507471663 | 507471549 | 3.410000e-33 | 154 |
31 | TraesCS5B01G497100 | chr6B | 89.831 | 118 | 10 | 2 | 2854 | 2970 | 585524848 | 585524732 | 4.410000e-32 | 150 |
32 | TraesCS5B01G497100 | chr6B | 93.814 | 97 | 6 | 0 | 3936 | 4032 | 471227574 | 471227670 | 5.710000e-31 | 147 |
33 | TraesCS5B01G497100 | chr6A | 90.678 | 118 | 7 | 4 | 2852 | 2968 | 454677961 | 454678075 | 3.410000e-33 | 154 |
34 | TraesCS5B01G497100 | chr4A | 93.333 | 105 | 6 | 1 | 3928 | 4032 | 556768051 | 556767948 | 3.410000e-33 | 154 |
35 | TraesCS5B01G497100 | chr4A | 94.792 | 96 | 4 | 1 | 3930 | 4025 | 489039934 | 489039840 | 1.590000e-31 | 148 |
36 | TraesCS5B01G497100 | chr4A | 92.381 | 105 | 6 | 2 | 3936 | 4038 | 597739877 | 597739981 | 1.590000e-31 | 148 |
37 | TraesCS5B01G497100 | chr7D | 91.346 | 104 | 7 | 2 | 3926 | 4029 | 4643979 | 4644080 | 2.650000e-29 | 141 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G497100 | chr5B | 664021200 | 664028258 | 7058 | True | 13036.000000 | 13036 | 100.0000 | 1 | 7059 | 1 | chr5B.!!$R1 | 7058 |
1 | TraesCS5B01G497100 | chr5B | 657200176 | 657201028 | 852 | False | 1182.000000 | 1182 | 91.7150 | 43 | 895 | 1 | chr5B.!!$F1 | 852 |
2 | TraesCS5B01G497100 | chr5D | 527497577 | 527506017 | 8440 | True | 2085.200000 | 4421 | 94.6758 | 43 | 7057 | 5 | chr5D.!!$R1 | 7014 |
3 | TraesCS5B01G497100 | chr5A | 654616766 | 654623118 | 6352 | True | 1484.333333 | 3384 | 93.6070 | 956 | 7050 | 6 | chr5A.!!$R1 | 6094 |
4 | TraesCS5B01G497100 | chr1D | 403062273 | 403063127 | 854 | True | 1223.000000 | 1223 | 92.5320 | 43 | 895 | 1 | chr1D.!!$R2 | 852 |
5 | TraesCS5B01G497100 | chr3D | 591109789 | 591110643 | 854 | True | 1201.000000 | 1201 | 92.0650 | 43 | 895 | 1 | chr3D.!!$R1 | 852 |
6 | TraesCS5B01G497100 | chr3A | 634078404 | 634079254 | 850 | True | 1199.000000 | 1199 | 92.1550 | 46 | 895 | 1 | chr3A.!!$R1 | 849 |
7 | TraesCS5B01G497100 | chr3A | 595775692 | 595776221 | 529 | False | 758.000000 | 758 | 92.4670 | 43 | 572 | 1 | chr3A.!!$F1 | 529 |
8 | TraesCS5B01G497100 | chr1A | 585641497 | 585642345 | 848 | True | 1195.000000 | 1195 | 92.0470 | 43 | 895 | 1 | chr1A.!!$R1 | 852 |
9 | TraesCS5B01G497100 | chr1A | 590117119 | 590117973 | 854 | True | 1168.000000 | 1168 | 91.3650 | 43 | 895 | 1 | chr1A.!!$R2 | 852 |
10 | TraesCS5B01G497100 | chr7B | 544130071 | 544130854 | 783 | True | 383.000000 | 383 | 75.9100 | 57 | 839 | 1 | chr7B.!!$R1 | 782 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
41 | 42 | 0.331278 | CCAAGGAGCACCCCACATTA | 59.669 | 55.000 | 0.00 | 0.0 | 36.73 | 1.90 | F |
1258 | 2649 | 0.251787 | GTGTGCCCCCTTCCAATTCT | 60.252 | 55.000 | 0.00 | 0.0 | 0.00 | 2.40 | F |
1886 | 3371 | 0.246360 | TCACTGTCCGCGTCATTGAT | 59.754 | 50.000 | 4.92 | 0.0 | 0.00 | 2.57 | F |
2291 | 3779 | 1.126948 | TGGCACAGTGTGATCAGGGA | 61.127 | 55.000 | 27.37 | 0.0 | 35.23 | 4.20 | F |
4001 | 5608 | 2.034305 | ACACTAGTGTCGAAAACGCTCT | 59.966 | 45.455 | 22.95 | 0.0 | 45.69 | 4.09 | F |
4023 | 5630 | 0.042131 | TATTGTGGGACGGAGGGAGT | 59.958 | 55.000 | 0.00 | 0.0 | 0.00 | 3.85 | F |
5242 | 6923 | 1.188863 | GTCTTGGGCTTGCCATGAAT | 58.811 | 50.000 | 14.04 | 0.0 | 0.00 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1318 | 2709 | 0.250513 | GAACTGCCTCCCACTGTAGG | 59.749 | 60.000 | 0.00 | 0.0 | 35.86 | 3.18 | R |
2578 | 4068 | 0.537188 | AGGACATCAAGTGCCTACCG | 59.463 | 55.000 | 0.00 | 0.0 | 39.79 | 4.02 | R |
2955 | 4451 | 1.553248 | CCATGTTGTACTCCCTCCGAA | 59.447 | 52.381 | 0.00 | 0.0 | 0.00 | 4.30 | R |
4004 | 5611 | 0.042131 | ACTCCCTCCGTCCCACAATA | 59.958 | 55.000 | 0.00 | 0.0 | 0.00 | 1.90 | R |
5176 | 6857 | 0.179020 | TGACCACCTCCTGCAAAGTG | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 3.16 | R |
5810 | 7753 | 1.286570 | CAGCGCCTGCATTTTGTCA | 59.713 | 52.632 | 2.29 | 0.0 | 46.23 | 3.58 | R |
6891 | 8876 | 1.112916 | TGCACTGTTCTCTGGACCGA | 61.113 | 55.000 | 0.00 | 0.0 | 0.00 | 4.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 2.450476 | AGACATGGGATCTTTGGTTGC | 58.550 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
22 | 23 | 1.478105 | GACATGGGATCTTTGGTTGCC | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
23 | 24 | 0.826062 | CATGGGATCTTTGGTTGCCC | 59.174 | 55.000 | 0.00 | 0.00 | 39.29 | 5.36 |
24 | 25 | 1.857049 | TGGGATCTTTGGTTGCCCA | 59.143 | 52.632 | 0.00 | 0.00 | 46.10 | 5.36 |
31 | 32 | 2.605873 | TTGGTTGCCCAAGGAGCA | 59.394 | 55.556 | 0.00 | 0.00 | 45.93 | 4.26 |
32 | 33 | 1.832167 | TTGGTTGCCCAAGGAGCAC | 60.832 | 57.895 | 2.37 | 0.00 | 45.93 | 4.40 |
33 | 34 | 2.991540 | GGTTGCCCAAGGAGCACC | 60.992 | 66.667 | 0.00 | 0.00 | 40.69 | 5.01 |
34 | 35 | 2.991540 | GTTGCCCAAGGAGCACCC | 60.992 | 66.667 | 0.00 | 0.00 | 40.69 | 4.61 |
35 | 36 | 4.299796 | TTGCCCAAGGAGCACCCC | 62.300 | 66.667 | 0.00 | 0.00 | 40.69 | 4.95 |
38 | 39 | 3.579302 | CCCAAGGAGCACCCCACA | 61.579 | 66.667 | 0.00 | 0.00 | 36.73 | 4.17 |
39 | 40 | 2.765969 | CCAAGGAGCACCCCACAT | 59.234 | 61.111 | 0.00 | 0.00 | 36.73 | 3.21 |
40 | 41 | 1.077265 | CCAAGGAGCACCCCACATT | 59.923 | 57.895 | 0.00 | 0.00 | 36.73 | 2.71 |
41 | 42 | 0.331278 | CCAAGGAGCACCCCACATTA | 59.669 | 55.000 | 0.00 | 0.00 | 36.73 | 1.90 |
154 | 156 | 7.843490 | AATTTTCAATGGCATCTTCATTCTG | 57.157 | 32.000 | 0.00 | 0.00 | 33.08 | 3.02 |
177 | 179 | 6.364701 | TGCACAGCAACTTATAAGGGAATAT | 58.635 | 36.000 | 16.73 | 0.00 | 34.76 | 1.28 |
226 | 228 | 6.981559 | GGTACAGAGATTTAATCGAGAAGCTT | 59.018 | 38.462 | 0.00 | 0.00 | 0.00 | 3.74 |
227 | 229 | 8.136165 | GGTACAGAGATTTAATCGAGAAGCTTA | 58.864 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
230 | 232 | 8.035394 | ACAGAGATTTAATCGAGAAGCTTACAA | 58.965 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
233 | 235 | 8.779354 | AGATTTAATCGAGAAGCTTACAAAGT | 57.221 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
258 | 260 | 9.223099 | GTAGGTAAGAAGCCATTTAACTTTGTA | 57.777 | 33.333 | 0.00 | 0.00 | 30.02 | 2.41 |
279 | 281 | 1.697432 | TGGTTCCTCCGACAAAGTCAT | 59.303 | 47.619 | 0.00 | 0.00 | 39.52 | 3.06 |
281 | 283 | 2.347731 | GTTCCTCCGACAAAGTCATCC | 58.652 | 52.381 | 0.00 | 0.00 | 32.09 | 3.51 |
383 | 386 | 1.812571 | CTGGCTAAACACCTTCGCAAT | 59.187 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
472 | 475 | 2.906568 | ACCAAGCATCCTCCCAAAATT | 58.093 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
503 | 506 | 3.945921 | CGACTATCACCCACAACTCTCTA | 59.054 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
518 | 521 | 8.812329 | CACAACTCTCTAACAGCATCTATAAAC | 58.188 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
684 | 687 | 8.096414 | AGCCATTTGCACAAAAGACTTATATTT | 58.904 | 29.630 | 0.00 | 0.00 | 44.83 | 1.40 |
740 | 743 | 1.072266 | TCCCTAGGTTGGCACACATT | 58.928 | 50.000 | 8.29 | 0.00 | 39.29 | 2.71 |
747 | 750 | 3.505386 | AGGTTGGCACACATTAATCCAA | 58.495 | 40.909 | 2.27 | 2.27 | 39.29 | 3.53 |
755 | 758 | 6.014242 | TGGCACACATTAATCCAATTTACCAA | 60.014 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
777 | 780 | 6.017192 | CCAAATGATATTTACGCACATCCTCA | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
788 | 791 | 2.733227 | GCACATCCTCATTTTCTTGCCG | 60.733 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
948 | 2339 | 1.270625 | CCCGTAACTTTCCTCTGCACA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
1153 | 2544 | 2.040043 | AGCCCCATCTCCCCTCTG | 60.040 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
1161 | 2552 | 0.693767 | ATCTCCCCTCTGCCCTTCTG | 60.694 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1177 | 2568 | 1.458777 | CTGCCCGTATACCCCAGGA | 60.459 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1198 | 2589 | 1.880340 | GCAACGGCCATCTCTCTCG | 60.880 | 63.158 | 2.24 | 0.00 | 0.00 | 4.04 |
1258 | 2649 | 0.251787 | GTGTGCCCCCTTCCAATTCT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1261 | 2652 | 0.323360 | TGCCCCCTTCCAATTCTTCG | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1318 | 2709 | 1.389555 | CCTAACCAATTTCGGCTCCC | 58.610 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1460 | 2861 | 3.130516 | GCTGGGTTTTAATTAGGAGTGCC | 59.869 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
1516 | 2917 | 8.767085 | ACGACTAACTTCGAATATTTTGTCAAA | 58.233 | 29.630 | 19.11 | 0.00 | 41.78 | 2.69 |
1517 | 2918 | 9.037417 | CGACTAACTTCGAATATTTTGTCAAAC | 57.963 | 33.333 | 19.11 | 0.00 | 41.78 | 2.93 |
1518 | 2919 | 9.872757 | GACTAACTTCGAATATTTTGTCAAACA | 57.127 | 29.630 | 16.57 | 0.00 | 0.00 | 2.83 |
1550 | 2951 | 9.935241 | CTGACCAGCTATGTGATATATAAACTT | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1551 | 2952 | 9.929180 | TGACCAGCTATGTGATATATAAACTTC | 57.071 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1552 | 2953 | 9.372369 | GACCAGCTATGTGATATATAAACTTCC | 57.628 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
1553 | 2954 | 9.105844 | ACCAGCTATGTGATATATAAACTTCCT | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
1611 | 3012 | 3.469008 | TCGACCTCGATAAATGGCATT | 57.531 | 42.857 | 6.96 | 6.96 | 44.22 | 3.56 |
1615 | 3016 | 5.408299 | TCGACCTCGATAAATGGCATTTATG | 59.592 | 40.000 | 37.13 | 28.94 | 43.46 | 1.90 |
1646 | 3047 | 6.016360 | CCTTTTGACACAGACAACAATATCCA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1648 | 3049 | 6.741992 | TTGACACAGACAACAATATCCATC | 57.258 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
1681 | 3082 | 8.220434 | GTGATTTAGCGTTAAACATTTGCAAAT | 58.780 | 29.630 | 18.99 | 18.99 | 31.90 | 2.32 |
1694 | 3095 | 6.804770 | CATTTGCAAATGGGAATTTTCTCA | 57.195 | 33.333 | 34.70 | 1.63 | 42.82 | 3.27 |
1865 | 3350 | 3.842923 | CGCTCCTCCGTGCCTGAT | 61.843 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1886 | 3371 | 0.246360 | TCACTGTCCGCGTCATTGAT | 59.754 | 50.000 | 4.92 | 0.00 | 0.00 | 2.57 |
1953 | 3438 | 5.917541 | TGTCGGTTTTTAGTCTTCATGTC | 57.082 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
1968 | 3453 | 6.917477 | GTCTTCATGTCTTCTCTATGCTACTG | 59.083 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
2032 | 3517 | 2.220824 | GCCAACCGATTTTGTGCTTTTC | 59.779 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
2165 | 3650 | 2.596452 | GTGATGACAGTACTGTGTCCG | 58.404 | 52.381 | 32.51 | 3.46 | 45.42 | 4.79 |
2201 | 3686 | 3.365364 | GCAACTTGCAATCACTACTCCAC | 60.365 | 47.826 | 8.97 | 0.00 | 44.26 | 4.02 |
2209 | 3694 | 4.808364 | GCAATCACTACTCCACTCTCAATC | 59.192 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
2224 | 3709 | 9.906660 | CCACTCTCAATCAGTAATAGAAGATAC | 57.093 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2291 | 3779 | 1.126948 | TGGCACAGTGTGATCAGGGA | 61.127 | 55.000 | 27.37 | 0.00 | 35.23 | 4.20 |
2335 | 3823 | 2.557452 | CCCTCCCTGTGCTATGGTTTTT | 60.557 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2336 | 3824 | 2.493278 | CCTCCCTGTGCTATGGTTTTTG | 59.507 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2352 | 3840 | 5.480772 | TGGTTTTTGGAACCACTCAAGTTTA | 59.519 | 36.000 | 6.54 | 0.00 | 44.74 | 2.01 |
2353 | 3841 | 6.014499 | TGGTTTTTGGAACCACTCAAGTTTAA | 60.014 | 34.615 | 6.54 | 0.00 | 44.74 | 1.52 |
2441 | 3931 | 7.282224 | TGTTGTTGTTTCTTGAGCAGTTACTAT | 59.718 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2578 | 4068 | 4.515191 | TGCTTCGGGAATAAGATATTGTGC | 59.485 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
2611 | 4101 | 6.772716 | ACTTGATGTCCTGTTTATTGACTGTT | 59.227 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2612 | 4102 | 6.558771 | TGATGTCCTGTTTATTGACTGTTG | 57.441 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
2667 | 4157 | 9.556030 | CTAATATGAGCATAGCACAATGAAATG | 57.444 | 33.333 | 0.00 | 0.00 | 32.39 | 2.32 |
2742 | 4232 | 6.981559 | GCAATAGAAGTCAGGTAGTAAAGAGG | 59.018 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
2955 | 4451 | 8.731275 | TCCATTTGAACGACAAGTAATATGAT | 57.269 | 30.769 | 0.00 | 0.00 | 39.77 | 2.45 |
2997 | 4493 | 3.500471 | GGAAATTGGAGGGACAGACCTTT | 60.500 | 47.826 | 0.00 | 0.00 | 42.10 | 3.11 |
3010 | 4506 | 9.004231 | AGGGACAGACCTTTATAAATAAGATGT | 57.996 | 33.333 | 0.00 | 1.36 | 37.69 | 3.06 |
3089 | 4592 | 7.928706 | CCTACACAAAGTATCCTATTGAAGAGG | 59.071 | 40.741 | 0.00 | 0.00 | 35.17 | 3.69 |
3676 | 5187 | 7.804843 | TCTAGAGGTAGTCAAATACAGTAGC | 57.195 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3737 | 5248 | 8.360390 | TGCGTGATCTGAATCAGTACTAATATT | 58.640 | 33.333 | 10.36 | 0.00 | 42.53 | 1.28 |
3800 | 5407 | 7.582667 | TGTCTAGTAGCTTATGCATTACTCA | 57.417 | 36.000 | 3.54 | 0.00 | 42.74 | 3.41 |
3952 | 5559 | 9.822185 | TTATTTTAGTTAATTACTCCCTCCGTC | 57.178 | 33.333 | 0.00 | 0.00 | 38.33 | 4.79 |
3953 | 5560 | 5.859205 | TTAGTTAATTACTCCCTCCGTCC | 57.141 | 43.478 | 0.00 | 0.00 | 38.33 | 4.79 |
3954 | 5561 | 3.036819 | AGTTAATTACTCCCTCCGTCCC | 58.963 | 50.000 | 0.00 | 0.00 | 28.23 | 4.46 |
3955 | 5562 | 2.767960 | GTTAATTACTCCCTCCGTCCCA | 59.232 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3956 | 5563 | 2.191981 | AATTACTCCCTCCGTCCCAT | 57.808 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3957 | 5564 | 3.339713 | AATTACTCCCTCCGTCCCATA | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
3958 | 5565 | 2.852714 | TTACTCCCTCCGTCCCATAA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3959 | 5566 | 3.339713 | TTACTCCCTCCGTCCCATAAT | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
3960 | 5567 | 4.474303 | TTACTCCCTCCGTCCCATAATA | 57.526 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
3961 | 5568 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
3962 | 5569 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
3963 | 5570 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
3964 | 5571 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
3965 | 5572 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3966 | 5573 | 5.269991 | TCCCTCCGTCCCATAATATAAGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
3967 | 5574 | 4.141914 | CCCTCCGTCCCATAATATAAGAGC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3968 | 5575 | 4.440250 | CCTCCGTCCCATAATATAAGAGCG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3969 | 5576 | 4.084287 | TCCGTCCCATAATATAAGAGCGT | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 5.07 |
3970 | 5577 | 4.525487 | TCCGTCCCATAATATAAGAGCGTT | 59.475 | 41.667 | 0.00 | 0.00 | 0.00 | 4.84 |
3971 | 5578 | 4.863131 | CCGTCCCATAATATAAGAGCGTTC | 59.137 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
3972 | 5579 | 5.336531 | CCGTCCCATAATATAAGAGCGTTCT | 60.337 | 44.000 | 0.00 | 0.00 | 34.29 | 3.01 |
3973 | 5580 | 6.157211 | CGTCCCATAATATAAGAGCGTTCTT | 58.843 | 40.000 | 18.78 | 18.78 | 45.45 | 2.52 |
3974 | 5581 | 6.645415 | CGTCCCATAATATAAGAGCGTTCTTT | 59.355 | 38.462 | 19.95 | 10.21 | 40.79 | 2.52 |
3975 | 5582 | 7.811236 | CGTCCCATAATATAAGAGCGTTCTTTA | 59.189 | 37.037 | 19.95 | 11.90 | 40.79 | 1.85 |
3976 | 5583 | 8.923683 | GTCCCATAATATAAGAGCGTTCTTTAC | 58.076 | 37.037 | 19.95 | 0.00 | 40.79 | 2.01 |
3977 | 5584 | 8.644216 | TCCCATAATATAAGAGCGTTCTTTACA | 58.356 | 33.333 | 19.95 | 2.51 | 40.79 | 2.41 |
3978 | 5585 | 8.709646 | CCCATAATATAAGAGCGTTCTTTACAC | 58.290 | 37.037 | 19.95 | 0.00 | 40.79 | 2.90 |
3979 | 5586 | 9.477484 | CCATAATATAAGAGCGTTCTTTACACT | 57.523 | 33.333 | 19.95 | 4.53 | 40.79 | 3.55 |
3983 | 5590 | 8.853469 | ATATAAGAGCGTTCTTTACACTACAC | 57.147 | 34.615 | 19.95 | 0.00 | 40.79 | 2.90 |
3984 | 5591 | 4.850347 | AGAGCGTTCTTTACACTACACT | 57.150 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
3985 | 5592 | 5.954296 | AGAGCGTTCTTTACACTACACTA | 57.046 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
3986 | 5593 | 5.940595 | AGAGCGTTCTTTACACTACACTAG | 58.059 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3987 | 5594 | 5.472820 | AGAGCGTTCTTTACACTACACTAGT | 59.527 | 40.000 | 0.00 | 0.00 | 40.28 | 2.57 |
3998 | 5605 | 3.303406 | ACTACACTAGTGTCGAAAACGC | 58.697 | 45.455 | 31.11 | 0.00 | 43.74 | 4.84 |
4000 | 5607 | 2.391879 | ACACTAGTGTCGAAAACGCTC | 58.608 | 47.619 | 22.95 | 0.00 | 45.69 | 5.03 |
4001 | 5608 | 2.034305 | ACACTAGTGTCGAAAACGCTCT | 59.966 | 45.455 | 22.95 | 0.00 | 45.69 | 4.09 |
4002 | 5609 | 3.050619 | CACTAGTGTCGAAAACGCTCTT | 58.949 | 45.455 | 15.06 | 0.00 | 45.69 | 2.85 |
4003 | 5610 | 4.224433 | CACTAGTGTCGAAAACGCTCTTA | 58.776 | 43.478 | 15.06 | 0.00 | 45.69 | 2.10 |
4004 | 5611 | 4.857588 | CACTAGTGTCGAAAACGCTCTTAT | 59.142 | 41.667 | 15.06 | 0.00 | 45.69 | 1.73 |
4005 | 5612 | 6.025896 | CACTAGTGTCGAAAACGCTCTTATA | 58.974 | 40.000 | 15.06 | 0.00 | 45.69 | 0.98 |
4006 | 5613 | 6.691818 | CACTAGTGTCGAAAACGCTCTTATAT | 59.308 | 38.462 | 15.06 | 0.00 | 45.69 | 0.86 |
4007 | 5614 | 7.220300 | CACTAGTGTCGAAAACGCTCTTATATT | 59.780 | 37.037 | 15.06 | 0.00 | 45.69 | 1.28 |
4008 | 5615 | 6.332504 | AGTGTCGAAAACGCTCTTATATTG | 57.667 | 37.500 | 0.00 | 0.00 | 45.69 | 1.90 |
4009 | 5616 | 5.867716 | AGTGTCGAAAACGCTCTTATATTGT | 59.132 | 36.000 | 0.00 | 0.00 | 45.69 | 2.71 |
4010 | 5617 | 5.952064 | GTGTCGAAAACGCTCTTATATTGTG | 59.048 | 40.000 | 0.00 | 0.00 | 35.42 | 3.33 |
4011 | 5618 | 5.062934 | TGTCGAAAACGCTCTTATATTGTGG | 59.937 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4012 | 5619 | 4.569162 | TCGAAAACGCTCTTATATTGTGGG | 59.431 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
4013 | 5620 | 4.569162 | CGAAAACGCTCTTATATTGTGGGA | 59.431 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
4014 | 5621 | 5.501897 | CGAAAACGCTCTTATATTGTGGGAC | 60.502 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4015 | 5622 | 3.093717 | ACGCTCTTATATTGTGGGACG | 57.906 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
4016 | 5623 | 2.223971 | ACGCTCTTATATTGTGGGACGG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4017 | 5624 | 2.035449 | CGCTCTTATATTGTGGGACGGA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4018 | 5625 | 3.654414 | GCTCTTATATTGTGGGACGGAG | 58.346 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4019 | 5626 | 3.555168 | GCTCTTATATTGTGGGACGGAGG | 60.555 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
4020 | 5627 | 2.969950 | TCTTATATTGTGGGACGGAGGG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4021 | 5628 | 2.779429 | TATATTGTGGGACGGAGGGA | 57.221 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4022 | 5629 | 1.424638 | ATATTGTGGGACGGAGGGAG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4023 | 5630 | 0.042131 | TATTGTGGGACGGAGGGAGT | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4024 | 5631 | 0.042131 | ATTGTGGGACGGAGGGAGTA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4078 | 5685 | 8.884124 | TTCTTTTCACAATCCTTTCTATCCAT | 57.116 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
4202 | 5809 | 8.972458 | TTATCCCATTTGATCGATCTGTTTTA | 57.028 | 30.769 | 25.02 | 1.75 | 0.00 | 1.52 |
4402 | 6009 | 5.124297 | TCATTGATTGACTACAACTGCATGG | 59.876 | 40.000 | 0.00 | 0.00 | 38.90 | 3.66 |
4678 | 6356 | 6.631016 | TCCTAGACAAGCACTAAACTATGTG | 58.369 | 40.000 | 0.00 | 0.00 | 37.26 | 3.21 |
4688 | 6366 | 7.904205 | AGCACTAAACTATGTGGTAAGTAGTT | 58.096 | 34.615 | 0.00 | 0.00 | 42.13 | 2.24 |
4876 | 6557 | 5.359756 | TCCAGATGAACCATATCTCAAACG | 58.640 | 41.667 | 0.00 | 0.00 | 32.75 | 3.60 |
4880 | 6561 | 7.307632 | CCAGATGAACCATATCTCAAACGAATC | 60.308 | 40.741 | 0.00 | 0.00 | 32.75 | 2.52 |
4889 | 6570 | 5.613358 | ATCTCAAACGAATCCTGTCAAAC | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 2.93 |
4937 | 6618 | 8.865590 | TGCAAAAACAATTAAAGTCTTCCTAC | 57.134 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
4994 | 6675 | 6.703607 | CAGTACTGTTCCATTCATACTGGATC | 59.296 | 42.308 | 15.06 | 0.00 | 42.26 | 3.36 |
5176 | 6857 | 3.191162 | TGCAAACCTGTGATATGAACTGC | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
5242 | 6923 | 1.188863 | GTCTTGGGCTTGCCATGAAT | 58.811 | 50.000 | 14.04 | 0.00 | 0.00 | 2.57 |
5257 | 6938 | 6.425735 | TGCCATGAATAAGATTTCTCTTGGA | 58.574 | 36.000 | 0.00 | 0.00 | 41.83 | 3.53 |
5258 | 6939 | 6.544931 | TGCCATGAATAAGATTTCTCTTGGAG | 59.455 | 38.462 | 0.00 | 0.00 | 41.83 | 3.86 |
5290 | 6971 | 7.398829 | TGCCAACTATATCCTTTACTGTTTGA | 58.601 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
5291 | 6972 | 7.552687 | TGCCAACTATATCCTTTACTGTTTGAG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
5489 | 7432 | 4.732672 | TCTGTCTCATGGTCTCAATCTG | 57.267 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
5502 | 7445 | 5.832060 | GGTCTCAATCTGGAATTGGATTCAT | 59.168 | 40.000 | 3.39 | 0.00 | 41.03 | 2.57 |
5631 | 7574 | 2.543067 | GAAGATCGGTTGGCCTGCCT | 62.543 | 60.000 | 9.97 | 0.00 | 36.94 | 4.75 |
5757 | 7700 | 5.694910 | TGTTGACTACTTGAACCGAGAAATC | 59.305 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5801 | 7744 | 6.242396 | AGTAGTCCTGCCTATGATGTACTAG | 58.758 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5810 | 7753 | 5.148502 | CCTATGATGTACTAGTTCCCAGGT | 58.851 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
5875 | 7818 | 1.566298 | ATCTGGCTTCTTTCGGGGCT | 61.566 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5995 | 7938 | 0.814457 | TCGCTGGTGTTTGCAACTTT | 59.186 | 45.000 | 0.00 | 0.00 | 32.44 | 2.66 |
6000 | 7943 | 4.259770 | CGCTGGTGTTTGCAACTTTTAAAG | 60.260 | 41.667 | 0.00 | 2.81 | 32.44 | 1.85 |
6163 | 8106 | 1.312884 | AATGGGAGGCCCTTCAGATT | 58.687 | 50.000 | 0.00 | 0.00 | 45.70 | 2.40 |
6164 | 8107 | 1.312884 | ATGGGAGGCCCTTCAGATTT | 58.687 | 50.000 | 0.00 | 0.00 | 45.70 | 2.17 |
6168 | 8111 | 3.076785 | TGGGAGGCCCTTCAGATTTAAAA | 59.923 | 43.478 | 0.00 | 0.00 | 45.70 | 1.52 |
6169 | 8112 | 4.093743 | GGGAGGCCCTTCAGATTTAAAAA | 58.906 | 43.478 | 0.00 | 0.00 | 41.34 | 1.94 |
6170 | 8113 | 4.160439 | GGGAGGCCCTTCAGATTTAAAAAG | 59.840 | 45.833 | 0.00 | 0.00 | 41.34 | 2.27 |
6205 | 8148 | 6.066054 | TGTTGATTATGTCGTGCAGAAAAA | 57.934 | 33.333 | 0.00 | 0.00 | 31.56 | 1.94 |
6297 | 8240 | 2.341257 | CATGACCGGACAAAGACAGAG | 58.659 | 52.381 | 9.46 | 0.00 | 0.00 | 3.35 |
6337 | 8281 | 9.219603 | CTCTAAATACCTCAATCACAAAGACAA | 57.780 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
6363 | 8318 | 8.535335 | AGAAACTATCTCAAGCACTGAAAGATA | 58.465 | 33.333 | 0.00 | 0.00 | 32.22 | 1.98 |
6398 | 8353 | 1.605710 | CCACAGAACAAGAAGCACCTG | 59.394 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
6399 | 8354 | 2.292267 | CACAGAACAAGAAGCACCTGT | 58.708 | 47.619 | 0.00 | 0.00 | 35.51 | 4.00 |
6400 | 8355 | 3.466836 | CACAGAACAAGAAGCACCTGTA | 58.533 | 45.455 | 0.00 | 0.00 | 34.01 | 2.74 |
6401 | 8356 | 3.248602 | CACAGAACAAGAAGCACCTGTAC | 59.751 | 47.826 | 0.00 | 0.00 | 34.01 | 2.90 |
6402 | 8357 | 3.134804 | ACAGAACAAGAAGCACCTGTACT | 59.865 | 43.478 | 0.00 | 0.00 | 33.65 | 2.73 |
6403 | 8358 | 4.130118 | CAGAACAAGAAGCACCTGTACTT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
6404 | 8359 | 4.576463 | CAGAACAAGAAGCACCTGTACTTT | 59.424 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
6405 | 8360 | 4.816925 | AGAACAAGAAGCACCTGTACTTTC | 59.183 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
6406 | 8361 | 3.477530 | ACAAGAAGCACCTGTACTTTCC | 58.522 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
6407 | 8362 | 3.118038 | ACAAGAAGCACCTGTACTTTCCA | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
6408 | 8363 | 3.127425 | AGAAGCACCTGTACTTTCCAC | 57.873 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
6409 | 8364 | 2.438021 | AGAAGCACCTGTACTTTCCACA | 59.562 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
6410 | 8365 | 2.550830 | AGCACCTGTACTTTCCACAG | 57.449 | 50.000 | 0.00 | 0.00 | 42.52 | 3.66 |
6411 | 8366 | 2.047061 | AGCACCTGTACTTTCCACAGA | 58.953 | 47.619 | 4.11 | 0.00 | 45.10 | 3.41 |
6412 | 8367 | 2.639839 | AGCACCTGTACTTTCCACAGAT | 59.360 | 45.455 | 4.11 | 0.00 | 45.10 | 2.90 |
6413 | 8368 | 3.003480 | GCACCTGTACTTTCCACAGATC | 58.997 | 50.000 | 4.11 | 0.00 | 45.10 | 2.75 |
6414 | 8369 | 3.557054 | GCACCTGTACTTTCCACAGATCA | 60.557 | 47.826 | 4.11 | 0.00 | 45.10 | 2.92 |
6415 | 8370 | 4.641396 | CACCTGTACTTTCCACAGATCAA | 58.359 | 43.478 | 4.11 | 0.00 | 45.10 | 2.57 |
6416 | 8371 | 4.692625 | CACCTGTACTTTCCACAGATCAAG | 59.307 | 45.833 | 4.11 | 0.00 | 45.10 | 3.02 |
6417 | 8372 | 4.593206 | ACCTGTACTTTCCACAGATCAAGA | 59.407 | 41.667 | 4.11 | 0.00 | 45.10 | 3.02 |
6418 | 8373 | 5.071788 | ACCTGTACTTTCCACAGATCAAGAA | 59.928 | 40.000 | 4.11 | 0.00 | 45.10 | 2.52 |
6419 | 8374 | 5.641209 | CCTGTACTTTCCACAGATCAAGAAG | 59.359 | 44.000 | 4.11 | 0.00 | 45.10 | 2.85 |
6420 | 8375 | 4.997395 | TGTACTTTCCACAGATCAAGAAGC | 59.003 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
6421 | 8376 | 4.090761 | ACTTTCCACAGATCAAGAAGCA | 57.909 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
6422 | 8377 | 3.817647 | ACTTTCCACAGATCAAGAAGCAC | 59.182 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
6423 | 8378 | 2.479566 | TCCACAGATCAAGAAGCACC | 57.520 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
6424 | 8379 | 1.980765 | TCCACAGATCAAGAAGCACCT | 59.019 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
6425 | 8380 | 2.027745 | TCCACAGATCAAGAAGCACCTC | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6653 | 8637 | 5.336150 | TCCAAGTTAGAGCTCTCTTCATG | 57.664 | 43.478 | 22.17 | 13.63 | 40.93 | 3.07 |
6739 | 8724 | 3.210227 | TCATCGACTCCTGCAAACAAAA | 58.790 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
6741 | 8726 | 3.896648 | TCGACTCCTGCAAACAAAATC | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
6891 | 8876 | 2.129555 | ATCCAGTTTGGCTGCTCCGT | 62.130 | 55.000 | 0.00 | 0.00 | 43.71 | 4.69 |
6973 | 8958 | 3.003394 | ACCGAGATTGGATCAAATGCA | 57.997 | 42.857 | 0.00 | 0.00 | 0.00 | 3.96 |
7004 | 8992 | 7.120579 | CCTTGTATTGTTGCCTATGAACAGTTA | 59.879 | 37.037 | 0.00 | 0.00 | 34.85 | 2.24 |
7007 | 8995 | 9.104965 | TGTATTGTTGCCTATGAACAGTTATAC | 57.895 | 33.333 | 0.00 | 0.00 | 34.85 | 1.47 |
7009 | 8997 | 8.752005 | ATTGTTGCCTATGAACAGTTATACAT | 57.248 | 30.769 | 0.00 | 0.00 | 34.85 | 2.29 |
7010 | 8998 | 9.845740 | ATTGTTGCCTATGAACAGTTATACATA | 57.154 | 29.630 | 0.00 | 0.00 | 34.85 | 2.29 |
7011 | 8999 | 8.887036 | TGTTGCCTATGAACAGTTATACATAG | 57.113 | 34.615 | 11.24 | 11.24 | 40.70 | 2.23 |
7052 | 9040 | 6.855836 | CATCCATGCTTTGCTAGTTTTTCTA | 58.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
7053 | 9041 | 7.486647 | CATCCATGCTTTGCTAGTTTTTCTAT | 58.513 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.827921 | GCAACCAAAGATCCCATGTCTT | 59.172 | 45.455 | 0.00 | 0.00 | 37.52 | 3.01 |
2 | 3 | 1.478105 | GGCAACCAAAGATCCCATGTC | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3 | 4 | 1.560505 | GGCAACCAAAGATCCCATGT | 58.439 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
17 | 18 | 2.991540 | GGGTGCTCCTTGGGCAAC | 60.992 | 66.667 | 4.53 | 0.00 | 45.58 | 4.17 |
18 | 19 | 4.299796 | GGGGTGCTCCTTGGGCAA | 62.300 | 66.667 | 4.53 | 0.00 | 41.54 | 4.52 |
21 | 22 | 2.445492 | AATGTGGGGTGCTCCTTGGG | 62.445 | 60.000 | 4.53 | 0.00 | 35.33 | 4.12 |
22 | 23 | 0.331278 | TAATGTGGGGTGCTCCTTGG | 59.669 | 55.000 | 4.53 | 0.00 | 35.33 | 3.61 |
23 | 24 | 1.271871 | TGTAATGTGGGGTGCTCCTTG | 60.272 | 52.381 | 4.53 | 0.00 | 35.33 | 3.61 |
24 | 25 | 1.072266 | TGTAATGTGGGGTGCTCCTT | 58.928 | 50.000 | 4.53 | 0.00 | 35.33 | 3.36 |
25 | 26 | 0.328258 | GTGTAATGTGGGGTGCTCCT | 59.672 | 55.000 | 4.53 | 0.00 | 35.33 | 3.69 |
26 | 27 | 0.037590 | TGTGTAATGTGGGGTGCTCC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
27 | 28 | 1.904287 | TTGTGTAATGTGGGGTGCTC | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
28 | 29 | 2.170166 | CATTGTGTAATGTGGGGTGCT | 58.830 | 47.619 | 0.00 | 0.00 | 39.05 | 4.40 |
29 | 30 | 1.404047 | GCATTGTGTAATGTGGGGTGC | 60.404 | 52.381 | 0.00 | 0.00 | 44.41 | 5.01 |
30 | 31 | 2.170166 | AGCATTGTGTAATGTGGGGTG | 58.830 | 47.619 | 0.00 | 0.00 | 44.41 | 4.61 |
31 | 32 | 2.603075 | AGCATTGTGTAATGTGGGGT | 57.397 | 45.000 | 0.00 | 0.00 | 44.41 | 4.95 |
32 | 33 | 3.181487 | GCTAAGCATTGTGTAATGTGGGG | 60.181 | 47.826 | 0.00 | 0.00 | 44.41 | 4.96 |
33 | 34 | 3.443329 | TGCTAAGCATTGTGTAATGTGGG | 59.557 | 43.478 | 0.00 | 0.00 | 44.41 | 4.61 |
34 | 35 | 4.414852 | GTGCTAAGCATTGTGTAATGTGG | 58.585 | 43.478 | 0.00 | 0.00 | 44.41 | 4.17 |
35 | 36 | 4.156556 | AGGTGCTAAGCATTGTGTAATGTG | 59.843 | 41.667 | 0.00 | 0.00 | 44.41 | 3.21 |
36 | 37 | 4.335416 | AGGTGCTAAGCATTGTGTAATGT | 58.665 | 39.130 | 0.00 | 0.00 | 44.41 | 2.71 |
37 | 38 | 4.970662 | AGGTGCTAAGCATTGTGTAATG | 57.029 | 40.909 | 0.00 | 0.00 | 45.17 | 1.90 |
38 | 39 | 5.105756 | GGAAAGGTGCTAAGCATTGTGTAAT | 60.106 | 40.000 | 0.00 | 0.00 | 41.91 | 1.89 |
39 | 40 | 4.217550 | GGAAAGGTGCTAAGCATTGTGTAA | 59.782 | 41.667 | 0.00 | 0.00 | 41.91 | 2.41 |
40 | 41 | 3.756434 | GGAAAGGTGCTAAGCATTGTGTA | 59.244 | 43.478 | 0.00 | 0.00 | 41.91 | 2.90 |
41 | 42 | 2.558359 | GGAAAGGTGCTAAGCATTGTGT | 59.442 | 45.455 | 0.00 | 0.00 | 41.91 | 3.72 |
154 | 156 | 6.884280 | ATATTCCCTTATAAGTTGCTGTGC | 57.116 | 37.500 | 11.50 | 0.00 | 0.00 | 4.57 |
226 | 228 | 9.223099 | GTTAAATGGCTTCTTACCTACTTTGTA | 57.777 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
227 | 229 | 7.942894 | AGTTAAATGGCTTCTTACCTACTTTGT | 59.057 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
230 | 232 | 8.793592 | CAAAGTTAAATGGCTTCTTACCTACTT | 58.206 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
233 | 235 | 9.969001 | ATACAAAGTTAAATGGCTTCTTACCTA | 57.031 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
258 | 260 | 1.697432 | TGACTTTGTCGGAGGAACCAT | 59.303 | 47.619 | 0.00 | 0.00 | 38.90 | 3.55 |
279 | 281 | 8.255206 | ACAAATTACTTGATATGTGTAGTCGGA | 58.745 | 33.333 | 0.00 | 0.00 | 38.50 | 4.55 |
281 | 283 | 9.901724 | GAACAAATTACTTGATATGTGTAGTCG | 57.098 | 33.333 | 0.00 | 0.00 | 38.50 | 4.18 |
383 | 386 | 3.627395 | CCTTTGGTAGGCATGTCACTA | 57.373 | 47.619 | 0.00 | 0.00 | 37.17 | 2.74 |
472 | 475 | 3.998341 | GTGGGTGATAGTCGCAAAACTAA | 59.002 | 43.478 | 0.00 | 0.00 | 35.47 | 2.24 |
485 | 488 | 4.081642 | GCTGTTAGAGAGTTGTGGGTGATA | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 2.15 |
518 | 521 | 8.292444 | TGGTTTGATGGAGGTTAAAGATATTG | 57.708 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
712 | 715 | 0.181350 | CAACCTAGGGATCAGGGTGC | 59.819 | 60.000 | 14.81 | 0.00 | 43.68 | 5.01 |
747 | 750 | 9.677567 | GATGTGCGTAAATATCATTTGGTAAAT | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
755 | 758 | 7.750229 | AATGAGGATGTGCGTAAATATCATT | 57.250 | 32.000 | 9.46 | 9.46 | 31.79 | 2.57 |
777 | 780 | 0.966179 | GGTTGGTCCGGCAAGAAAAT | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
808 | 811 | 3.119955 | GGCGTGGGTAAAAGATTTGACTC | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
850 | 853 | 1.180029 | GCATTCCCAGTCACATGCTT | 58.820 | 50.000 | 0.00 | 0.00 | 39.20 | 3.91 |
923 | 2314 | 3.129502 | GGAAAGTTACGGGCCGGC | 61.130 | 66.667 | 31.78 | 21.18 | 0.00 | 6.13 |
1153 | 2544 | 1.070957 | GGTATACGGGCAGAAGGGC | 59.929 | 63.158 | 0.00 | 0.00 | 42.44 | 5.19 |
1161 | 2552 | 1.755393 | CTGTCCTGGGGTATACGGGC | 61.755 | 65.000 | 0.00 | 0.00 | 34.27 | 6.13 |
1177 | 2568 | 1.078848 | GAGAGATGGCCGTTGCTGT | 60.079 | 57.895 | 0.00 | 0.00 | 37.74 | 4.40 |
1318 | 2709 | 0.250513 | GAACTGCCTCCCACTGTAGG | 59.749 | 60.000 | 0.00 | 0.00 | 35.86 | 3.18 |
1334 | 2725 | 2.432628 | CGAGGTGGTGGCGAGAAC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1549 | 2950 | 9.627123 | ACGAGGAAATTGATGATTTATAAGGAA | 57.373 | 29.630 | 0.00 | 0.00 | 38.06 | 3.36 |
1611 | 3012 | 2.243810 | GTGTCAAAAGGGCCACCATAA | 58.756 | 47.619 | 6.18 | 0.00 | 40.13 | 1.90 |
1615 | 3016 | 0.467290 | TCTGTGTCAAAAGGGCCACC | 60.467 | 55.000 | 6.18 | 0.00 | 0.00 | 4.61 |
1646 | 3047 | 3.895232 | ACGCTAAATCACTCTGTGGAT | 57.105 | 42.857 | 0.00 | 0.00 | 33.87 | 3.41 |
1648 | 3049 | 5.178623 | TGTTTAACGCTAAATCACTCTGTGG | 59.821 | 40.000 | 0.00 | 0.00 | 33.87 | 4.17 |
1681 | 3082 | 6.976934 | AGCTAAAAGTTGAGAAAATTCCCA | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
1694 | 3095 | 9.077885 | TCCATCTTCAAATACAAGCTAAAAGTT | 57.922 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
1741 | 3225 | 8.251383 | TGTAGAAACCTTAGGAGATGGATAAG | 57.749 | 38.462 | 4.77 | 0.00 | 0.00 | 1.73 |
1865 | 3350 | 0.943835 | CAATGACGCGGACAGTGACA | 60.944 | 55.000 | 23.66 | 6.96 | 39.11 | 3.58 |
1886 | 3371 | 1.137675 | CCAAGATGGAGCGATGACTCA | 59.862 | 52.381 | 0.00 | 0.00 | 40.96 | 3.41 |
1953 | 3438 | 8.659925 | ATGAATTGAACAGTAGCATAGAGAAG | 57.340 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
2032 | 3517 | 8.792830 | TTTCTCCACAACCATATCTAAGAAAG | 57.207 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
2151 | 3636 | 6.770746 | ATAGAATTACGGACACAGTACTGT | 57.229 | 37.500 | 22.95 | 22.95 | 46.17 | 3.55 |
2165 | 3650 | 5.938883 | GCAAGTTGCAGCAATAGAATTAC | 57.061 | 39.130 | 22.90 | 0.00 | 44.26 | 1.89 |
2209 | 3694 | 7.591795 | CGGTACTGCTTGTATCTTCTATTACTG | 59.408 | 40.741 | 0.00 | 0.00 | 33.23 | 2.74 |
2261 | 3749 | 3.085533 | ACACTGTGCCAAGTACAACAAA | 58.914 | 40.909 | 7.90 | 0.00 | 0.00 | 2.83 |
2312 | 3800 | 1.384502 | CCATAGCACAGGGAGGGGA | 60.385 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
2335 | 3823 | 7.776030 | TGTAATTCTTAAACTTGAGTGGTTCCA | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
2336 | 3824 | 8.161699 | TGTAATTCTTAAACTTGAGTGGTTCC | 57.838 | 34.615 | 0.00 | 0.00 | 0.00 | 3.62 |
2352 | 3840 | 5.352569 | CGATGGACTTGAGCTTGTAATTCTT | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2353 | 3841 | 4.872691 | CGATGGACTTGAGCTTGTAATTCT | 59.127 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
2478 | 3968 | 5.358725 | TCATCACGCCTCTAACATAGTACAA | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2485 | 3975 | 6.038271 | GGTAAAAATCATCACGCCTCTAACAT | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
2540 | 4030 | 3.947841 | GCACGCGCAAGACACCAA | 61.948 | 61.111 | 5.73 | 0.00 | 43.02 | 3.67 |
2578 | 4068 | 0.537188 | AGGACATCAAGTGCCTACCG | 59.463 | 55.000 | 0.00 | 0.00 | 39.79 | 4.02 |
2611 | 4101 | 7.225784 | ACCTGTTATGTGTAAAATGAATGCA | 57.774 | 32.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2612 | 4102 | 8.532977 | AAACCTGTTATGTGTAAAATGAATGC | 57.467 | 30.769 | 0.00 | 0.00 | 0.00 | 3.56 |
2742 | 4232 | 5.922544 | GTGGCATTTATGATTATCTGGTTGC | 59.077 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2955 | 4451 | 1.553248 | CCATGTTGTACTCCCTCCGAA | 59.447 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3089 | 4592 | 3.066760 | GGCCAATAGTTTCTACATGCACC | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
3159 | 4662 | 8.447924 | AGATGAAGTATGATGGAAATCACTTG | 57.552 | 34.615 | 0.00 | 0.00 | 32.79 | 3.16 |
3785 | 5392 | 7.378966 | TCTACTATGGTGAGTAATGCATAAGC | 58.621 | 38.462 | 0.00 | 0.00 | 34.80 | 3.09 |
3800 | 5407 | 6.198639 | AGAAGGACAGAACATCTACTATGGT | 58.801 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3942 | 5549 | 5.269991 | TCTTATATTATGGGACGGAGGGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3943 | 5550 | 5.269991 | CTCTTATATTATGGGACGGAGGGA | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
3944 | 5551 | 4.141914 | GCTCTTATATTATGGGACGGAGGG | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3945 | 5552 | 4.440250 | CGCTCTTATATTATGGGACGGAGG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3946 | 5553 | 4.158025 | ACGCTCTTATATTATGGGACGGAG | 59.842 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
3947 | 5554 | 4.084287 | ACGCTCTTATATTATGGGACGGA | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
3948 | 5555 | 4.451629 | ACGCTCTTATATTATGGGACGG | 57.548 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
3949 | 5556 | 5.710984 | AGAACGCTCTTATATTATGGGACG | 58.289 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3950 | 5557 | 7.964604 | AAAGAACGCTCTTATATTATGGGAC | 57.035 | 36.000 | 0.67 | 0.00 | 41.23 | 4.46 |
3951 | 5558 | 8.644216 | TGTAAAGAACGCTCTTATATTATGGGA | 58.356 | 33.333 | 0.67 | 0.00 | 41.23 | 4.37 |
3952 | 5559 | 8.709646 | GTGTAAAGAACGCTCTTATATTATGGG | 58.290 | 37.037 | 0.67 | 0.00 | 41.23 | 4.00 |
3953 | 5560 | 9.477484 | AGTGTAAAGAACGCTCTTATATTATGG | 57.523 | 33.333 | 0.67 | 0.00 | 46.05 | 2.74 |
3957 | 5564 | 9.298774 | GTGTAGTGTAAAGAACGCTCTTATATT | 57.701 | 33.333 | 0.67 | 0.00 | 46.05 | 1.28 |
3958 | 5565 | 8.684520 | AGTGTAGTGTAAAGAACGCTCTTATAT | 58.315 | 33.333 | 0.67 | 0.00 | 46.05 | 0.86 |
3959 | 5566 | 8.048534 | AGTGTAGTGTAAAGAACGCTCTTATA | 57.951 | 34.615 | 0.67 | 0.00 | 46.05 | 0.98 |
3960 | 5567 | 6.921914 | AGTGTAGTGTAAAGAACGCTCTTAT | 58.078 | 36.000 | 0.67 | 0.00 | 46.05 | 1.73 |
3961 | 5568 | 6.323203 | AGTGTAGTGTAAAGAACGCTCTTA | 57.677 | 37.500 | 0.67 | 0.00 | 46.05 | 2.10 |
3962 | 5569 | 5.197682 | AGTGTAGTGTAAAGAACGCTCTT | 57.802 | 39.130 | 0.00 | 0.00 | 46.05 | 2.85 |
3963 | 5570 | 4.850347 | AGTGTAGTGTAAAGAACGCTCT | 57.150 | 40.909 | 0.00 | 0.00 | 46.05 | 4.09 |
3964 | 5571 | 5.568296 | CACTAGTGTAGTGTAAAGAACGCTC | 59.432 | 44.000 | 15.06 | 0.00 | 46.05 | 5.03 |
3977 | 5584 | 3.004106 | AGCGTTTTCGACACTAGTGTAGT | 59.996 | 43.478 | 27.98 | 6.32 | 45.05 | 2.73 |
3978 | 5585 | 3.562505 | AGCGTTTTCGACACTAGTGTAG | 58.437 | 45.455 | 27.98 | 26.46 | 45.05 | 2.74 |
3979 | 5586 | 3.251729 | AGAGCGTTTTCGACACTAGTGTA | 59.748 | 43.478 | 27.98 | 11.50 | 45.05 | 2.90 |
3991 | 5598 | 5.501897 | CGTCCCACAATATAAGAGCGTTTTC | 60.502 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3992 | 5599 | 4.331717 | CGTCCCACAATATAAGAGCGTTTT | 59.668 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3993 | 5600 | 3.869246 | CGTCCCACAATATAAGAGCGTTT | 59.131 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
3994 | 5601 | 3.454375 | CGTCCCACAATATAAGAGCGTT | 58.546 | 45.455 | 0.00 | 0.00 | 0.00 | 4.84 |
3995 | 5602 | 2.223971 | CCGTCCCACAATATAAGAGCGT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
3996 | 5603 | 2.035449 | TCCGTCCCACAATATAAGAGCG | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3997 | 5604 | 3.555168 | CCTCCGTCCCACAATATAAGAGC | 60.555 | 52.174 | 0.00 | 0.00 | 0.00 | 4.09 |
3998 | 5605 | 3.006967 | CCCTCCGTCCCACAATATAAGAG | 59.993 | 52.174 | 0.00 | 0.00 | 0.00 | 2.85 |
3999 | 5606 | 2.969950 | CCCTCCGTCCCACAATATAAGA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4000 | 5607 | 2.969950 | TCCCTCCGTCCCACAATATAAG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
4001 | 5608 | 2.969950 | CTCCCTCCGTCCCACAATATAA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
4002 | 5609 | 2.090943 | ACTCCCTCCGTCCCACAATATA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 0.86 |
4003 | 5610 | 1.344087 | ACTCCCTCCGTCCCACAATAT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 1.28 |
4004 | 5611 | 0.042131 | ACTCCCTCCGTCCCACAATA | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
4005 | 5612 | 0.042131 | TACTCCCTCCGTCCCACAAT | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4006 | 5613 | 0.613853 | CTACTCCCTCCGTCCCACAA | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4007 | 5614 | 1.000019 | CTACTCCCTCCGTCCCACA | 60.000 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
4008 | 5615 | 0.614134 | AACTACTCCCTCCGTCCCAC | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4009 | 5616 | 0.115745 | AAACTACTCCCTCCGTCCCA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4010 | 5617 | 2.149973 | TAAACTACTCCCTCCGTCCC | 57.850 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4011 | 5618 | 3.450096 | ACAATAAACTACTCCCTCCGTCC | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
4012 | 5619 | 4.159135 | TGACAATAAACTACTCCCTCCGTC | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4013 | 5620 | 4.091549 | TGACAATAAACTACTCCCTCCGT | 58.908 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
4014 | 5621 | 4.401519 | TCTGACAATAAACTACTCCCTCCG | 59.598 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
4015 | 5622 | 5.187186 | TGTCTGACAATAAACTACTCCCTCC | 59.813 | 44.000 | 8.27 | 0.00 | 0.00 | 4.30 |
4016 | 5623 | 6.153000 | TCTGTCTGACAATAAACTACTCCCTC | 59.847 | 42.308 | 12.16 | 0.00 | 0.00 | 4.30 |
4017 | 5624 | 6.017192 | TCTGTCTGACAATAAACTACTCCCT | 58.983 | 40.000 | 12.16 | 0.00 | 0.00 | 4.20 |
4018 | 5625 | 6.282199 | TCTGTCTGACAATAAACTACTCCC | 57.718 | 41.667 | 12.16 | 0.00 | 0.00 | 4.30 |
4019 | 5626 | 8.603242 | TTTTCTGTCTGACAATAAACTACTCC | 57.397 | 34.615 | 12.16 | 0.00 | 0.00 | 3.85 |
4022 | 5629 | 9.827411 | GGAATTTTCTGTCTGACAATAAACTAC | 57.173 | 33.333 | 12.16 | 2.64 | 0.00 | 2.73 |
4023 | 5630 | 9.567776 | TGGAATTTTCTGTCTGACAATAAACTA | 57.432 | 29.630 | 12.16 | 2.82 | 0.00 | 2.24 |
4024 | 5631 | 8.463930 | TGGAATTTTCTGTCTGACAATAAACT | 57.536 | 30.769 | 12.16 | 5.14 | 0.00 | 2.66 |
4172 | 5779 | 7.101700 | CAGATCGATCAAATGGGATAATGAGA | 58.898 | 38.462 | 26.47 | 0.00 | 0.00 | 3.27 |
4385 | 5992 | 3.769739 | AGACCATGCAGTTGTAGTCAA | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
4402 | 6009 | 9.921637 | TTTGGAATTGTTTATGTATTGGAAGAC | 57.078 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
4561 | 6173 | 1.846439 | TGGATAGGCCAGCTTAGCTTT | 59.154 | 47.619 | 3.00 | 0.00 | 43.33 | 3.51 |
4562 | 6174 | 1.511613 | TGGATAGGCCAGCTTAGCTT | 58.488 | 50.000 | 3.00 | 0.64 | 43.33 | 3.74 |
4563 | 6175 | 3.247424 | TGGATAGGCCAGCTTAGCT | 57.753 | 52.632 | 5.01 | 0.00 | 43.33 | 3.32 |
4678 | 6356 | 4.171754 | CAGCACTTCCGTAACTACTTACC | 58.828 | 47.826 | 0.00 | 0.00 | 30.00 | 2.85 |
4688 | 6366 | 2.036604 | TCACATGAACAGCACTTCCGTA | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4704 | 6382 | 2.198827 | TTCGTGGGCAAGAATCACAT | 57.801 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4850 | 6531 | 7.012704 | CGTTTGAGATATGGTTCATCTGGATTT | 59.987 | 37.037 | 0.00 | 0.00 | 32.86 | 2.17 |
4876 | 6557 | 6.536941 | GGAGTATTCAGAGTTTGACAGGATTC | 59.463 | 42.308 | 0.00 | 0.00 | 34.94 | 2.52 |
4880 | 6561 | 5.152623 | TGGAGTATTCAGAGTTTGACAGG | 57.847 | 43.478 | 0.00 | 0.00 | 34.94 | 4.00 |
4889 | 6570 | 6.669278 | CATTTGCATCATGGAGTATTCAGAG | 58.331 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4937 | 6618 | 8.458052 | TGGAAATACACAGTATTTGCACAATAG | 58.542 | 33.333 | 23.72 | 0.00 | 39.28 | 1.73 |
5176 | 6857 | 0.179020 | TGACCACCTCCTGCAAAGTG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5242 | 6923 | 3.769844 | AGTCGGCTCCAAGAGAAATCTTA | 59.230 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
5257 | 6938 | 2.224305 | GGATATAGTTGGCAAGTCGGCT | 60.224 | 50.000 | 11.55 | 1.41 | 41.89 | 5.52 |
5258 | 6939 | 2.143925 | GGATATAGTTGGCAAGTCGGC | 58.856 | 52.381 | 11.55 | 0.07 | 41.67 | 5.54 |
5298 | 6979 | 9.565213 | CCTGCAATAATATAATTTGCTAAGAGC | 57.435 | 33.333 | 14.54 | 0.00 | 44.62 | 4.09 |
5358 | 7267 | 5.163311 | TGTGCATACAGAACATAGCCTACAT | 60.163 | 40.000 | 0.00 | 0.00 | 27.92 | 2.29 |
5394 | 7336 | 8.496707 | AGTCATTTGCAAGTTTGAAAAAGAAT | 57.503 | 26.923 | 0.00 | 2.27 | 39.06 | 2.40 |
5517 | 7460 | 9.294030 | CTTCACTTGATTATCTTATGGCAAAAC | 57.706 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
5757 | 7700 | 1.482182 | TCATCAGAGAATCACCCACCG | 59.518 | 52.381 | 0.00 | 0.00 | 37.82 | 4.94 |
5801 | 7744 | 1.686052 | TGCATTTTGTCACCTGGGAAC | 59.314 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
5810 | 7753 | 1.286570 | CAGCGCCTGCATTTTGTCA | 59.713 | 52.632 | 2.29 | 0.00 | 46.23 | 3.58 |
5875 | 7818 | 4.640201 | CGAGGCAAAATAATCTCCTTGGAA | 59.360 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
6038 | 7981 | 0.030101 | TTGTAACAAGTTGCAGCCGC | 59.970 | 50.000 | 1.81 | 0.00 | 36.59 | 6.53 |
6071 | 8014 | 2.969628 | AGAACACTAATCTGGAGCCG | 57.030 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
6111 | 8054 | 5.581975 | AGAAGGTAGTTGGACTAGTAGCTT | 58.418 | 41.667 | 11.06 | 11.06 | 41.81 | 3.74 |
6205 | 8148 | 8.910666 | GCAGCTTTGTTTTTGTTTTGTTTTATT | 58.089 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
6218 | 8161 | 4.326504 | AGTATGCAGCAGCTTTGTTTTT | 57.673 | 36.364 | 0.00 | 0.00 | 42.74 | 1.94 |
6337 | 8281 | 6.763355 | TCTTTCAGTGCTTGAGATAGTTTCT | 58.237 | 36.000 | 0.00 | 0.00 | 37.07 | 2.52 |
6363 | 8318 | 8.514330 | TTGTTCTGTGGTTTAGACTTTAATGT | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
6398 | 8353 | 4.997395 | TGCTTCTTGATCTGTGGAAAGTAC | 59.003 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
6399 | 8354 | 4.997395 | GTGCTTCTTGATCTGTGGAAAGTA | 59.003 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
6400 | 8355 | 3.817647 | GTGCTTCTTGATCTGTGGAAAGT | 59.182 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
6401 | 8356 | 3.190118 | GGTGCTTCTTGATCTGTGGAAAG | 59.810 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
6402 | 8357 | 3.149196 | GGTGCTTCTTGATCTGTGGAAA | 58.851 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
6403 | 8358 | 2.373169 | AGGTGCTTCTTGATCTGTGGAA | 59.627 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
6404 | 8359 | 1.980765 | AGGTGCTTCTTGATCTGTGGA | 59.019 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
6405 | 8360 | 2.027377 | AGAGGTGCTTCTTGATCTGTGG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
6406 | 8361 | 3.331478 | AGAGGTGCTTCTTGATCTGTG | 57.669 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
6407 | 8362 | 4.100808 | GGATAGAGGTGCTTCTTGATCTGT | 59.899 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
6408 | 8363 | 4.502950 | GGGATAGAGGTGCTTCTTGATCTG | 60.503 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
6409 | 8364 | 3.645687 | GGGATAGAGGTGCTTCTTGATCT | 59.354 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
6410 | 8365 | 3.645687 | AGGGATAGAGGTGCTTCTTGATC | 59.354 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
6411 | 8366 | 3.663198 | AGGGATAGAGGTGCTTCTTGAT | 58.337 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
6412 | 8367 | 3.121929 | AGGGATAGAGGTGCTTCTTGA | 57.878 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
6413 | 8368 | 3.054802 | ACAAGGGATAGAGGTGCTTCTTG | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
6414 | 8369 | 3.185455 | ACAAGGGATAGAGGTGCTTCTT | 58.815 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
6415 | 8370 | 2.839228 | ACAAGGGATAGAGGTGCTTCT | 58.161 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
6416 | 8371 | 4.636249 | CATACAAGGGATAGAGGTGCTTC | 58.364 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
6417 | 8372 | 3.181450 | GCATACAAGGGATAGAGGTGCTT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
6418 | 8373 | 2.370189 | GCATACAAGGGATAGAGGTGCT | 59.630 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
6419 | 8374 | 2.370189 | AGCATACAAGGGATAGAGGTGC | 59.630 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
6420 | 8375 | 3.805108 | GCAGCATACAAGGGATAGAGGTG | 60.805 | 52.174 | 0.00 | 0.00 | 0.00 | 4.00 |
6421 | 8376 | 2.370189 | GCAGCATACAAGGGATAGAGGT | 59.630 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6422 | 8377 | 2.636893 | AGCAGCATACAAGGGATAGAGG | 59.363 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
6423 | 8378 | 4.063689 | CAAGCAGCATACAAGGGATAGAG | 58.936 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
6424 | 8379 | 3.745480 | GCAAGCAGCATACAAGGGATAGA | 60.745 | 47.826 | 0.00 | 0.00 | 44.79 | 1.98 |
6425 | 8380 | 2.551459 | GCAAGCAGCATACAAGGGATAG | 59.449 | 50.000 | 0.00 | 0.00 | 44.79 | 2.08 |
6653 | 8637 | 5.801350 | TGACGACAAAGATGATTCCAATC | 57.199 | 39.130 | 0.00 | 0.00 | 35.97 | 2.67 |
6739 | 8724 | 7.781324 | AATGTTGAGGGTTAAACATGAAGAT | 57.219 | 32.000 | 0.00 | 0.00 | 44.24 | 2.40 |
6741 | 8726 | 7.312899 | GGTAATGTTGAGGGTTAAACATGAAG | 58.687 | 38.462 | 0.00 | 0.00 | 44.24 | 3.02 |
6781 | 8766 | 5.903010 | TGAAGGTACATATCCTCCTTGCTTA | 59.097 | 40.000 | 0.00 | 0.00 | 39.91 | 3.09 |
6891 | 8876 | 1.112916 | TGCACTGTTCTCTGGACCGA | 61.113 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
6973 | 8958 | 2.446435 | AGGCAACAATACAAGGCGAAT | 58.554 | 42.857 | 0.00 | 0.00 | 41.41 | 3.34 |
7004 | 8992 | 8.510243 | TGCAACAAGTGATTTGATCTATGTAT | 57.490 | 30.769 | 0.00 | 0.00 | 39.21 | 2.29 |
7007 | 8995 | 6.916387 | GGATGCAACAAGTGATTTGATCTATG | 59.084 | 38.462 | 0.00 | 0.00 | 39.21 | 2.23 |
7009 | 8997 | 5.945191 | TGGATGCAACAAGTGATTTGATCTA | 59.055 | 36.000 | 0.00 | 0.00 | 39.21 | 1.98 |
7010 | 8998 | 4.768448 | TGGATGCAACAAGTGATTTGATCT | 59.232 | 37.500 | 0.00 | 0.00 | 39.21 | 2.75 |
7011 | 8999 | 5.063180 | TGGATGCAACAAGTGATTTGATC | 57.937 | 39.130 | 0.00 | 0.00 | 39.21 | 2.92 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.