Multiple sequence alignment - TraesCS5B01G496200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G496200 | chr5B | 100.000 | 5043 | 0 | 0 | 1 | 5043 | 663229847 | 663224805 | 0.000000e+00 | 9313.0 |
1 | TraesCS5B01G496200 | chr5D | 94.116 | 3263 | 128 | 34 | 2 | 3242 | 527157792 | 527154572 | 0.000000e+00 | 4903.0 |
2 | TraesCS5B01G496200 | chr5D | 94.488 | 762 | 34 | 5 | 3519 | 4280 | 527154321 | 527153568 | 0.000000e+00 | 1168.0 |
3 | TraesCS5B01G496200 | chr5D | 90.684 | 526 | 25 | 9 | 4532 | 5043 | 527153162 | 527152647 | 0.000000e+00 | 678.0 |
4 | TraesCS5B01G496200 | chr5D | 97.403 | 231 | 6 | 0 | 3233 | 3463 | 527154549 | 527154319 | 1.320000e-105 | 394.0 |
5 | TraesCS5B01G496200 | chr5D | 92.920 | 226 | 15 | 1 | 4307 | 4532 | 527153443 | 527153219 | 1.350000e-85 | 327.0 |
6 | TraesCS5B01G496200 | chr5D | 100.000 | 56 | 0 | 0 | 3459 | 3514 | 527570698 | 527570753 | 2.480000e-18 | 104.0 |
7 | TraesCS5B01G496200 | chr5D | 100.000 | 56 | 0 | 0 | 3459 | 3514 | 527600261 | 527600316 | 2.480000e-18 | 104.0 |
8 | TraesCS5B01G496200 | chr5A | 93.327 | 1978 | 92 | 11 | 1521 | 3463 | 654168611 | 654166639 | 0.000000e+00 | 2885.0 |
9 | TraesCS5B01G496200 | chr5A | 91.172 | 1801 | 120 | 17 | 473 | 2256 | 654157934 | 654156156 | 0.000000e+00 | 2409.0 |
10 | TraesCS5B01G496200 | chr5A | 93.523 | 1019 | 44 | 9 | 2241 | 3239 | 654156136 | 654155120 | 0.000000e+00 | 1496.0 |
11 | TraesCS5B01G496200 | chr5A | 96.914 | 810 | 25 | 0 | 728 | 1537 | 654169471 | 654168662 | 0.000000e+00 | 1358.0 |
12 | TraesCS5B01G496200 | chr5A | 86.819 | 1047 | 84 | 17 | 3519 | 4532 | 654154809 | 654153784 | 0.000000e+00 | 1120.0 |
13 | TraesCS5B01G496200 | chr5A | 92.402 | 737 | 39 | 9 | 2 | 731 | 654170277 | 654169551 | 0.000000e+00 | 1035.0 |
14 | TraesCS5B01G496200 | chr5A | 92.222 | 540 | 36 | 5 | 3519 | 4058 | 654166641 | 654166108 | 0.000000e+00 | 760.0 |
15 | TraesCS5B01G496200 | chr5A | 88.911 | 514 | 24 | 11 | 4532 | 5043 | 654153729 | 654153247 | 2.010000e-168 | 603.0 |
16 | TraesCS5B01G496200 | chr5A | 95.455 | 220 | 10 | 0 | 3245 | 3464 | 654155025 | 654154806 | 8.030000e-93 | 351.0 |
17 | TraesCS5B01G496200 | chr5A | 83.654 | 312 | 37 | 9 | 5 | 313 | 654159266 | 654158966 | 1.070000e-71 | 281.0 |
18 | TraesCS5B01G496200 | chr2B | 79.473 | 1632 | 253 | 55 | 648 | 2237 | 781540208 | 781538617 | 0.000000e+00 | 1083.0 |
19 | TraesCS5B01G496200 | chr2B | 82.996 | 841 | 112 | 23 | 729 | 1554 | 781582070 | 781581246 | 0.000000e+00 | 732.0 |
20 | TraesCS5B01G496200 | chr2B | 84.314 | 663 | 76 | 13 | 2827 | 3463 | 781579863 | 781579203 | 1.540000e-174 | 623.0 |
21 | TraesCS5B01G496200 | chr2B | 84.686 | 542 | 68 | 12 | 967 | 1498 | 781541928 | 781541392 | 1.240000e-145 | 527.0 |
22 | TraesCS5B01G496200 | chr2B | 84.778 | 427 | 53 | 8 | 2814 | 3237 | 781537326 | 781536909 | 7.810000e-113 | 418.0 |
23 | TraesCS5B01G496200 | chr2B | 82.963 | 135 | 22 | 1 | 2620 | 2754 | 781537868 | 781537735 | 2.470000e-23 | 121.0 |
24 | TraesCS5B01G496200 | chr2A | 78.139 | 1601 | 246 | 66 | 648 | 2215 | 775939957 | 775938428 | 0.000000e+00 | 922.0 |
25 | TraesCS5B01G496200 | chr2A | 78.472 | 1440 | 194 | 60 | 729 | 2124 | 775978139 | 775976772 | 0.000000e+00 | 835.0 |
26 | TraesCS5B01G496200 | chr2A | 84.163 | 663 | 77 | 12 | 2827 | 3463 | 775976057 | 775975397 | 7.170000e-173 | 617.0 |
27 | TraesCS5B01G496200 | chr2A | 81.657 | 676 | 95 | 15 | 2818 | 3465 | 775942010 | 775941336 | 7.430000e-148 | 534.0 |
28 | TraesCS5B01G496200 | chr2A | 81.348 | 445 | 71 | 9 | 3580 | 4023 | 775936874 | 775936441 | 8.030000e-93 | 351.0 |
29 | TraesCS5B01G496200 | chr2A | 79.294 | 425 | 60 | 14 | 3600 | 4023 | 775941243 | 775940846 | 6.430000e-69 | 272.0 |
30 | TraesCS5B01G496200 | chr2D | 79.262 | 1437 | 191 | 57 | 729 | 2124 | 651696650 | 651698020 | 0.000000e+00 | 904.0 |
31 | TraesCS5B01G496200 | chr2D | 82.474 | 776 | 113 | 15 | 648 | 1414 | 651720945 | 651721706 | 0.000000e+00 | 658.0 |
32 | TraesCS5B01G496200 | chr2D | 84.639 | 664 | 74 | 13 | 2827 | 3464 | 651698733 | 651699394 | 1.980000e-178 | 636.0 |
33 | TraesCS5B01G496200 | chr2D | 83.964 | 661 | 81 | 17 | 2814 | 3463 | 651724017 | 651724663 | 1.200000e-170 | 610.0 |
34 | TraesCS5B01G496200 | chr2D | 85.740 | 554 | 64 | 12 | 967 | 1511 | 651715663 | 651716210 | 5.660000e-159 | 571.0 |
35 | TraesCS5B01G496200 | chr2D | 77.452 | 683 | 112 | 27 | 1531 | 2196 | 651722057 | 651722714 | 2.220000e-98 | 370.0 |
36 | TraesCS5B01G496200 | chr2D | 86.383 | 235 | 31 | 1 | 3231 | 3465 | 651719274 | 651719507 | 6.480000e-64 | 255.0 |
37 | TraesCS5B01G496200 | chr2D | 79.946 | 369 | 48 | 12 | 3656 | 4023 | 651719712 | 651720055 | 1.080000e-61 | 248.0 |
38 | TraesCS5B01G496200 | chr1A | 96.970 | 66 | 0 | 2 | 3449 | 3514 | 430006376 | 430006439 | 5.340000e-20 | 110.0 |
39 | TraesCS5B01G496200 | chr3D | 100.000 | 54 | 0 | 0 | 3461 | 3514 | 529777750 | 529777697 | 3.210000e-17 | 100.0 |
40 | TraesCS5B01G496200 | chr6D | 98.246 | 57 | 0 | 1 | 3458 | 3514 | 74868173 | 74868118 | 1.160000e-16 | 99.0 |
41 | TraesCS5B01G496200 | chr6D | 92.647 | 68 | 3 | 2 | 3458 | 3524 | 46709607 | 46709541 | 4.160000e-16 | 97.1 |
42 | TraesCS5B01G496200 | chr3B | 98.246 | 57 | 0 | 1 | 3458 | 3514 | 219339016 | 219338961 | 1.160000e-16 | 99.0 |
43 | TraesCS5B01G496200 | chr3B | 98.246 | 57 | 0 | 1 | 3458 | 3514 | 220626556 | 220626501 | 1.160000e-16 | 99.0 |
44 | TraesCS5B01G496200 | chr4B | 89.041 | 73 | 5 | 3 | 3442 | 3514 | 285608347 | 285608416 | 2.500000e-13 | 87.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G496200 | chr5B | 663224805 | 663229847 | 5042 | True | 9313.000000 | 9313 | 100.000000 | 1 | 5043 | 1 | chr5B.!!$R1 | 5042 |
1 | TraesCS5B01G496200 | chr5D | 527152647 | 527157792 | 5145 | True | 1494.000000 | 4903 | 93.922200 | 2 | 5043 | 5 | chr5D.!!$R1 | 5041 |
2 | TraesCS5B01G496200 | chr5A | 654166108 | 654170277 | 4169 | True | 1509.500000 | 2885 | 93.716250 | 2 | 4058 | 4 | chr5A.!!$R2 | 4056 |
3 | TraesCS5B01G496200 | chr5A | 654153247 | 654159266 | 6019 | True | 1043.333333 | 2409 | 89.922333 | 5 | 5043 | 6 | chr5A.!!$R1 | 5038 |
4 | TraesCS5B01G496200 | chr2B | 781579203 | 781582070 | 2867 | True | 677.500000 | 732 | 83.655000 | 729 | 3463 | 2 | chr2B.!!$R2 | 2734 |
5 | TraesCS5B01G496200 | chr2B | 781536909 | 781541928 | 5019 | True | 537.250000 | 1083 | 82.975000 | 648 | 3237 | 4 | chr2B.!!$R1 | 2589 |
6 | TraesCS5B01G496200 | chr2A | 775975397 | 775978139 | 2742 | True | 726.000000 | 835 | 81.317500 | 729 | 3463 | 2 | chr2A.!!$R2 | 2734 |
7 | TraesCS5B01G496200 | chr2A | 775936441 | 775942010 | 5569 | True | 519.750000 | 922 | 80.109500 | 648 | 4023 | 4 | chr2A.!!$R1 | 3375 |
8 | TraesCS5B01G496200 | chr2D | 651696650 | 651699394 | 2744 | False | 770.000000 | 904 | 81.950500 | 729 | 3464 | 2 | chr2D.!!$F1 | 2735 |
9 | TraesCS5B01G496200 | chr2D | 651715663 | 651724663 | 9000 | False | 452.000000 | 658 | 82.659833 | 648 | 4023 | 6 | chr2D.!!$F2 | 3375 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
576 | 1455 | 0.039617 | TCTTTTCATTTGTGCCGCGG | 60.040 | 50.000 | 24.05 | 24.05 | 0.00 | 6.46 | F |
1672 | 7141 | 1.446618 | CAATTGCAAGCCGGCCTTC | 60.447 | 57.895 | 26.15 | 12.90 | 0.00 | 3.46 | F |
2536 | 8589 | 2.344872 | GGCCCAAAAGCTTGCCTG | 59.655 | 61.111 | 16.26 | 7.26 | 40.77 | 4.85 | F |
3477 | 10113 | 0.115745 | AAGTACTCCCTCCGTCCCAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2536 | 8589 | 0.599060 | TTTCCGGCCGAAAAATGGTC | 59.401 | 50.0 | 30.73 | 0.00 | 37.53 | 4.02 | R |
3066 | 9613 | 1.267121 | TGAGCTGAGGTCCTTGGTAC | 58.733 | 55.0 | 9.40 | 0.00 | 0.00 | 3.34 | R |
3946 | 10743 | 0.162933 | CAAAGCTTGCTGCATTTGCG | 59.837 | 50.0 | 12.57 | 0.08 | 45.94 | 4.85 | R |
4993 | 11995 | 0.526211 | GCAAAGAGCCCCTTAAACCG | 59.474 | 55.0 | 0.00 | 0.00 | 37.23 | 4.44 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
85 | 86 | 4.269603 | CGAATTGACTCACTGAGCATTAGG | 59.730 | 45.833 | 5.92 | 0.00 | 32.04 | 2.69 |
101 | 102 | 6.958767 | AGCATTAGGTCACCAAGTACTATTT | 58.041 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
102 | 103 | 7.402862 | AGCATTAGGTCACCAAGTACTATTTT | 58.597 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
225 | 229 | 2.451990 | CGCATCGCACATTCCACGA | 61.452 | 57.895 | 0.00 | 0.00 | 40.53 | 4.35 |
314 | 318 | 2.878991 | GCATGTCGTCGCGCACTA | 60.879 | 61.111 | 8.75 | 0.00 | 0.00 | 2.74 |
334 | 338 | 1.617947 | GGAGCGACAGGGGATGTTCT | 61.618 | 60.000 | 0.00 | 0.00 | 44.17 | 3.01 |
347 | 353 | 3.388350 | GGGATGTTCTACCGAAGATTCCT | 59.612 | 47.826 | 3.06 | 0.00 | 42.58 | 3.36 |
350 | 356 | 4.451629 | TGTTCTACCGAAGATTCCTGTC | 57.548 | 45.455 | 0.00 | 0.00 | 33.05 | 3.51 |
485 | 1361 | 0.396811 | CCTTGACCGGGAAGTGAAGT | 59.603 | 55.000 | 6.32 | 0.00 | 29.97 | 3.01 |
487 | 1363 | 2.236395 | CCTTGACCGGGAAGTGAAGTAT | 59.764 | 50.000 | 6.32 | 0.00 | 29.97 | 2.12 |
490 | 1366 | 4.360951 | TGACCGGGAAGTGAAGTATTTT | 57.639 | 40.909 | 6.32 | 0.00 | 0.00 | 1.82 |
576 | 1455 | 0.039617 | TCTTTTCATTTGTGCCGCGG | 60.040 | 50.000 | 24.05 | 24.05 | 0.00 | 6.46 |
639 | 1523 | 2.954318 | GCTGTTGGGTAGATGCATCATT | 59.046 | 45.455 | 27.81 | 11.41 | 0.00 | 2.57 |
713 | 5688 | 3.059634 | GTGTCTTGCACAGCGTAAAAA | 57.940 | 42.857 | 0.00 | 0.00 | 46.91 | 1.94 |
717 | 5692 | 5.005299 | GTGTCTTGCACAGCGTAAAAATTTT | 59.995 | 36.000 | 0.00 | 0.00 | 46.91 | 1.82 |
925 | 5992 | 2.115427 | TGAGGTGTCCTGACAGTGAAA | 58.885 | 47.619 | 0.00 | 0.00 | 42.74 | 2.69 |
941 | 6008 | 2.548057 | GTGAAAGTTTGATGACGAGCCA | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
1216 | 6283 | 4.517285 | TCTTTTCCTGGATCTGGATTTCG | 58.483 | 43.478 | 0.00 | 0.00 | 31.78 | 3.46 |
1458 | 6536 | 3.912496 | TGGGTGTATTCATGTGAGGAG | 57.088 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
1571 | 6948 | 1.632920 | TGCATCCATGTGTACCCTTGA | 59.367 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
1672 | 7141 | 1.446618 | CAATTGCAAGCCGGCCTTC | 60.447 | 57.895 | 26.15 | 12.90 | 0.00 | 3.46 |
1756 | 7254 | 7.494952 | GTGGGAAAGTAGCTATTTAGTTAGGTG | 59.505 | 40.741 | 1.46 | 0.00 | 32.47 | 4.00 |
1927 | 7469 | 9.183368 | TGTTATACATCTTATTGTGGCAAATCA | 57.817 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2301 | 8346 | 5.744345 | GTGACGGACATAGTTGAGATTGTAG | 59.256 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2536 | 8589 | 2.344872 | GGCCCAAAAGCTTGCCTG | 59.655 | 61.111 | 16.26 | 7.26 | 40.77 | 4.85 |
2649 | 8770 | 7.439655 | GGTGGAGATAACATCTTTGAGTGATAC | 59.560 | 40.741 | 0.00 | 0.00 | 40.38 | 2.24 |
2667 | 8788 | 9.436957 | GAGTGATACCTTTTTCTCTCATTAACA | 57.563 | 33.333 | 0.00 | 0.00 | 34.31 | 2.41 |
2772 | 8898 | 6.743627 | GTGAAATCAGTTGTTTAACGTGAACA | 59.256 | 34.615 | 12.24 | 12.24 | 41.71 | 3.18 |
2847 | 9389 | 6.482524 | ACCTACTTCTGTGTAGATGTGAGTA | 58.517 | 40.000 | 10.46 | 0.00 | 41.63 | 2.59 |
2871 | 9413 | 9.216117 | GTACTTTGATGAACTTGGTGTAGTAAT | 57.784 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2897 | 9440 | 8.160765 | TGATAGTGGGAGTGAAAAATAAGTTCA | 58.839 | 33.333 | 0.00 | 0.00 | 32.62 | 3.18 |
2950 | 9494 | 3.378112 | TGATCAAAATTCCGTGGATCAGC | 59.622 | 43.478 | 0.00 | 0.00 | 39.37 | 4.26 |
3066 | 9613 | 1.445410 | TGTTGCCGTACTAGCGCTG | 60.445 | 57.895 | 22.90 | 12.81 | 0.00 | 5.18 |
3122 | 9669 | 4.099266 | CCACCCTCTTTTTCATCACACAAA | 59.901 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
3148 | 9695 | 4.467769 | AGTTGATATTCATGCCTCAAGGG | 58.532 | 43.478 | 0.00 | 0.00 | 35.18 | 3.95 |
3464 | 10100 | 6.037940 | TCGCAATCGTCTATTCTGTAAGTACT | 59.962 | 38.462 | 0.00 | 0.00 | 36.96 | 2.73 |
3465 | 10101 | 6.357503 | CGCAATCGTCTATTCTGTAAGTACTC | 59.642 | 42.308 | 0.00 | 0.00 | 33.76 | 2.59 |
3466 | 10102 | 6.637658 | GCAATCGTCTATTCTGTAAGTACTCC | 59.362 | 42.308 | 0.00 | 0.00 | 33.76 | 3.85 |
3467 | 10103 | 6.880942 | ATCGTCTATTCTGTAAGTACTCCC | 57.119 | 41.667 | 0.00 | 0.00 | 33.76 | 4.30 |
3468 | 10104 | 5.999044 | TCGTCTATTCTGTAAGTACTCCCT | 58.001 | 41.667 | 0.00 | 0.00 | 33.76 | 4.20 |
3469 | 10105 | 6.054295 | TCGTCTATTCTGTAAGTACTCCCTC | 58.946 | 44.000 | 0.00 | 0.00 | 33.76 | 4.30 |
3470 | 10106 | 5.239087 | CGTCTATTCTGTAAGTACTCCCTCC | 59.761 | 48.000 | 0.00 | 0.00 | 33.76 | 4.30 |
3471 | 10107 | 5.239087 | GTCTATTCTGTAAGTACTCCCTCCG | 59.761 | 48.000 | 0.00 | 0.00 | 33.76 | 4.63 |
3472 | 10108 | 3.446442 | TTCTGTAAGTACTCCCTCCGT | 57.554 | 47.619 | 0.00 | 0.00 | 33.76 | 4.69 |
3473 | 10109 | 2.996631 | TCTGTAAGTACTCCCTCCGTC | 58.003 | 52.381 | 0.00 | 0.00 | 33.76 | 4.79 |
3474 | 10110 | 2.022934 | CTGTAAGTACTCCCTCCGTCC | 58.977 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
3475 | 10111 | 1.341383 | TGTAAGTACTCCCTCCGTCCC | 60.341 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
3476 | 10112 | 1.002069 | TAAGTACTCCCTCCGTCCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3477 | 10113 | 0.115745 | AAGTACTCCCTCCGTCCCAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3478 | 10114 | 0.115745 | AGTACTCCCTCCGTCCCAAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
3479 | 10115 | 0.978907 | GTACTCCCTCCGTCCCAAAA | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3480 | 10116 | 1.558294 | GTACTCCCTCCGTCCCAAAAT | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
3481 | 10117 | 1.961133 | ACTCCCTCCGTCCCAAAATA | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3482 | 10118 | 2.271777 | ACTCCCTCCGTCCCAAAATAA | 58.728 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
3483 | 10119 | 2.238898 | ACTCCCTCCGTCCCAAAATAAG | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3484 | 10120 | 2.238898 | CTCCCTCCGTCCCAAAATAAGT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3485 | 10121 | 2.026636 | TCCCTCCGTCCCAAAATAAGTG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3486 | 10122 | 2.026636 | CCCTCCGTCCCAAAATAAGTGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3487 | 10123 | 3.007635 | CCTCCGTCCCAAAATAAGTGAC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3488 | 10124 | 3.307480 | CCTCCGTCCCAAAATAAGTGACT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
3489 | 10125 | 3.933332 | CTCCGTCCCAAAATAAGTGACTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
3490 | 10126 | 3.325425 | TCCGTCCCAAAATAAGTGACTCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
3491 | 10127 | 4.069304 | CCGTCCCAAAATAAGTGACTCAA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
3492 | 10128 | 4.083484 | CCGTCCCAAAATAAGTGACTCAAC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
3493 | 10129 | 4.755123 | CGTCCCAAAATAAGTGACTCAACT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3494 | 10130 | 5.238650 | CGTCCCAAAATAAGTGACTCAACTT | 59.761 | 40.000 | 0.00 | 0.00 | 42.89 | 2.66 |
3495 | 10131 | 6.238648 | CGTCCCAAAATAAGTGACTCAACTTT | 60.239 | 38.462 | 0.00 | 0.00 | 40.77 | 2.66 |
3496 | 10132 | 7.041644 | CGTCCCAAAATAAGTGACTCAACTTTA | 60.042 | 37.037 | 0.00 | 0.00 | 40.77 | 1.85 |
3497 | 10133 | 8.074370 | GTCCCAAAATAAGTGACTCAACTTTAC | 58.926 | 37.037 | 0.00 | 0.00 | 40.77 | 2.01 |
3498 | 10134 | 7.776030 | TCCCAAAATAAGTGACTCAACTTTACA | 59.224 | 33.333 | 0.00 | 0.00 | 40.77 | 2.41 |
3499 | 10135 | 7.860872 | CCCAAAATAAGTGACTCAACTTTACAC | 59.139 | 37.037 | 0.00 | 0.00 | 40.77 | 2.90 |
3500 | 10136 | 8.621286 | CCAAAATAAGTGACTCAACTTTACACT | 58.379 | 33.333 | 0.00 | 0.00 | 40.77 | 3.55 |
3506 | 10142 | 8.788325 | AAGTGACTCAACTTTACACTAACTTT | 57.212 | 30.769 | 0.00 | 0.00 | 40.23 | 2.66 |
3507 | 10143 | 8.197988 | AGTGACTCAACTTTACACTAACTTTG | 57.802 | 34.615 | 0.00 | 0.00 | 39.52 | 2.77 |
3508 | 10144 | 7.822822 | AGTGACTCAACTTTACACTAACTTTGT | 59.177 | 33.333 | 0.00 | 0.00 | 39.52 | 2.83 |
3509 | 10145 | 9.090692 | GTGACTCAACTTTACACTAACTTTGTA | 57.909 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3510 | 10146 | 9.090692 | TGACTCAACTTTACACTAACTTTGTAC | 57.909 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3511 | 10147 | 9.310716 | GACTCAACTTTACACTAACTTTGTACT | 57.689 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
3517 | 10153 | 9.978044 | ACTTTACACTAACTTTGTACTAAGAGG | 57.022 | 33.333 | 21.48 | 13.06 | 0.00 | 3.69 |
3518 | 10154 | 9.420551 | CTTTACACTAACTTTGTACTAAGAGGG | 57.579 | 37.037 | 21.48 | 13.48 | 0.00 | 4.30 |
3519 | 10155 | 6.990908 | ACACTAACTTTGTACTAAGAGGGT | 57.009 | 37.500 | 21.48 | 14.04 | 0.00 | 4.34 |
3520 | 10156 | 9.586732 | TTACACTAACTTTGTACTAAGAGGGTA | 57.413 | 33.333 | 21.48 | 16.84 | 0.00 | 3.69 |
3521 | 10157 | 7.890515 | ACACTAACTTTGTACTAAGAGGGTAC | 58.109 | 38.462 | 21.48 | 0.00 | 39.70 | 3.34 |
3534 | 10170 | 2.661176 | AGGGTACAAGAATCCCCTCA | 57.339 | 50.000 | 0.00 | 0.00 | 44.33 | 3.86 |
3537 | 10173 | 3.660669 | AGGGTACAAGAATCCCCTCAAAA | 59.339 | 43.478 | 0.00 | 0.00 | 44.33 | 2.44 |
3542 | 10178 | 6.437477 | GGTACAAGAATCCCCTCAAAAAGAAT | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
3543 | 10179 | 7.039011 | GGTACAAGAATCCCCTCAAAAAGAATT | 60.039 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
3818 | 10615 | 9.453572 | ACAGAAGAGCTACATCAATTTTTATCA | 57.546 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
3850 | 10647 | 2.499289 | TCTCTCCCTTCTGATGAACAGC | 59.501 | 50.000 | 0.00 | 0.00 | 45.38 | 4.40 |
3862 | 10659 | 4.827692 | TGATGAACAGCGTAATAAGTGGT | 58.172 | 39.130 | 0.00 | 0.00 | 0.00 | 4.16 |
3935 | 10732 | 2.091852 | AGTAGCTCTCAGCAAGCAAC | 57.908 | 50.000 | 0.00 | 0.00 | 45.56 | 4.17 |
3977 | 10774 | 3.257624 | AGCAAGCTTTGATTTGGAGGAAG | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
4116 | 10938 | 1.694150 | CTCAAGCGATCCCCATTAGGA | 59.306 | 52.381 | 0.00 | 0.00 | 41.18 | 2.94 |
4157 | 10979 | 0.035056 | GGAGATTGTGGGGAGTGGTG | 60.035 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4158 | 10980 | 0.035056 | GAGATTGTGGGGAGTGGTGG | 60.035 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4159 | 10981 | 0.772124 | AGATTGTGGGGAGTGGTGGT | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4185 | 11007 | 4.102367 | AGCAATGGGTTCTCTTCCTATCTC | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 2.75 |
4240 | 11062 | 2.144482 | TAAGCTAATACCCGCTTCGC | 57.856 | 50.000 | 0.00 | 0.00 | 44.64 | 4.70 |
4258 | 11080 | 5.334105 | GCTTCGCAGTCAAAACTCAGATAAA | 60.334 | 40.000 | 0.00 | 0.00 | 31.71 | 1.40 |
4265 | 11087 | 9.334693 | GCAGTCAAAACTCAGATAAATAAGTTG | 57.665 | 33.333 | 0.00 | 0.00 | 32.53 | 3.16 |
4281 | 11103 | 4.795970 | AAGTTGTAGCTCAAGTTTCACG | 57.204 | 40.909 | 11.08 | 0.00 | 44.36 | 4.35 |
4282 | 11104 | 2.544267 | AGTTGTAGCTCAAGTTTCACGC | 59.456 | 45.455 | 0.00 | 0.00 | 36.41 | 5.34 |
4283 | 11105 | 2.232756 | TGTAGCTCAAGTTTCACGCA | 57.767 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
4284 | 11106 | 2.766313 | TGTAGCTCAAGTTTCACGCAT | 58.234 | 42.857 | 0.00 | 0.00 | 0.00 | 4.73 |
4285 | 11107 | 3.920446 | TGTAGCTCAAGTTTCACGCATA | 58.080 | 40.909 | 0.00 | 0.00 | 0.00 | 3.14 |
4302 | 11124 | 5.961263 | CACGCATACGGGTTAGTTAAATTTC | 59.039 | 40.000 | 0.00 | 0.00 | 46.04 | 2.17 |
4317 | 11243 | 6.258068 | AGTTAAATTTCTACTAGCATGTCGCC | 59.742 | 38.462 | 0.00 | 0.00 | 44.04 | 5.54 |
4356 | 11282 | 4.560128 | GAATGTCGCTCTGCATCCTTATA | 58.440 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
4361 | 11287 | 5.098893 | GTCGCTCTGCATCCTTATATGTAG | 58.901 | 45.833 | 0.00 | 0.00 | 39.95 | 2.74 |
4380 | 11306 | 2.783135 | AGTCACGACAATCCATGCTTT | 58.217 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
4383 | 11309 | 2.743664 | TCACGACAATCCATGCTTTGAG | 59.256 | 45.455 | 11.48 | 8.02 | 0.00 | 3.02 |
4557 | 11545 | 4.846779 | TGGAACTGAAGTTGGCATTTAC | 57.153 | 40.909 | 0.00 | 0.00 | 38.56 | 2.01 |
4638 | 11629 | 5.105797 | GCATTGGACCTTTTCACATATGTCA | 60.106 | 40.000 | 5.07 | 0.00 | 0.00 | 3.58 |
4661 | 11653 | 9.833182 | GTCACTGATCCTTTCTTCTTTAATTTC | 57.167 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
4662 | 11654 | 9.014297 | TCACTGATCCTTTCTTCTTTAATTTCC | 57.986 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
4784 | 11776 | 1.351017 | CAACCTGCCTTCAGTTAGGGA | 59.649 | 52.381 | 0.00 | 0.00 | 38.66 | 4.20 |
4854 | 11846 | 3.791245 | TGCCTCAATGAAACACCAAAAC | 58.209 | 40.909 | 0.00 | 0.00 | 0.00 | 2.43 |
4855 | 11847 | 3.196469 | TGCCTCAATGAAACACCAAAACA | 59.804 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4856 | 11848 | 4.187694 | GCCTCAATGAAACACCAAAACAA | 58.812 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4857 | 11849 | 4.270808 | GCCTCAATGAAACACCAAAACAAG | 59.729 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
4858 | 11850 | 5.418676 | CCTCAATGAAACACCAAAACAAGT | 58.581 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
4859 | 11851 | 6.568869 | CCTCAATGAAACACCAAAACAAGTA | 58.431 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4860 | 11852 | 7.038659 | CCTCAATGAAACACCAAAACAAGTAA | 58.961 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4861 | 11853 | 7.547370 | CCTCAATGAAACACCAAAACAAGTAAA | 59.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
4926 | 11923 | 2.102252 | CCTTAGAGTCATCAGCCTGTCC | 59.898 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
4930 | 11927 | 0.904865 | AGTCATCAGCCTGTCCGGAA | 60.905 | 55.000 | 5.23 | 0.00 | 33.16 | 4.30 |
4951 | 11948 | 6.572509 | CGGAATTATCTACCAGACCCATAGTG | 60.573 | 46.154 | 0.00 | 0.00 | 0.00 | 2.74 |
4993 | 11995 | 3.068307 | ACACGGCAGATGGAGATACTTAC | 59.932 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
4995 | 11997 | 2.351835 | CGGCAGATGGAGATACTTACGG | 60.352 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
5024 | 12027 | 1.348276 | CTCTTTGCTGCAGTCTCGAG | 58.652 | 55.000 | 16.64 | 5.93 | 0.00 | 4.04 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.161609 | CCTTTTAGTGGCCGCAGTTAAG | 59.838 | 50.000 | 20.59 | 14.85 | 0.00 | 1.85 |
189 | 193 | 6.564125 | GCGATGCGTAGAAAACTAAAGCATAT | 60.564 | 38.462 | 15.62 | 3.34 | 42.87 | 1.78 |
190 | 194 | 5.276678 | GCGATGCGTAGAAAACTAAAGCATA | 60.277 | 40.000 | 15.62 | 0.00 | 42.87 | 3.14 |
191 | 195 | 4.494199 | GCGATGCGTAGAAAACTAAAGCAT | 60.494 | 41.667 | 15.60 | 15.60 | 45.07 | 3.79 |
205 | 209 | 1.417577 | CGTGGAATGTGCGATGCGTA | 61.418 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
211 | 215 | 0.246360 | AGATGTCGTGGAATGTGCGA | 59.754 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
225 | 229 | 3.696051 | GCATGGGTATGACAACAAGATGT | 59.304 | 43.478 | 0.00 | 0.00 | 36.36 | 3.06 |
314 | 318 | 1.613630 | AACATCCCCTGTCGCTCCT | 60.614 | 57.895 | 0.00 | 0.00 | 36.98 | 3.69 |
334 | 338 | 3.830178 | TGAAGTGACAGGAATCTTCGGTA | 59.170 | 43.478 | 0.00 | 0.00 | 39.05 | 4.02 |
347 | 353 | 4.284829 | TGCACCTCATATTGAAGTGACA | 57.715 | 40.909 | 9.78 | 5.32 | 40.35 | 3.58 |
448 | 1063 | 6.348540 | GGTCAAGGTGTCAAGAATTACATGAC | 60.349 | 42.308 | 0.00 | 9.61 | 44.36 | 3.06 |
485 | 1361 | 7.668469 | GGAAAAGGAGGTAGGAACTTCAAAATA | 59.332 | 37.037 | 0.00 | 0.00 | 41.75 | 1.40 |
487 | 1363 | 5.831525 | GGAAAAGGAGGTAGGAACTTCAAAA | 59.168 | 40.000 | 0.00 | 0.00 | 41.75 | 2.44 |
490 | 1366 | 3.007614 | CGGAAAAGGAGGTAGGAACTTCA | 59.992 | 47.826 | 0.00 | 0.00 | 41.75 | 3.02 |
576 | 1455 | 4.990426 | AGCATCCAACACTTAAAACATTGC | 59.010 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
580 | 1459 | 5.843673 | TGAAGCATCCAACACTTAAAACA | 57.156 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
581 | 1460 | 7.653311 | AGATTTGAAGCATCCAACACTTAAAAC | 59.347 | 33.333 | 0.00 | 0.00 | 28.84 | 2.43 |
639 | 1523 | 4.299586 | TCCAAGGTGCTTGTATGAATGA | 57.700 | 40.909 | 0.00 | 0.00 | 39.58 | 2.57 |
706 | 5681 | 6.490877 | ACTTCGCAACAGAAAATTTTTACG | 57.509 | 33.333 | 4.63 | 3.86 | 0.00 | 3.18 |
713 | 5688 | 6.560253 | ACATCTTACTTCGCAACAGAAAAT | 57.440 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
717 | 5692 | 4.927425 | GGTTACATCTTACTTCGCAACAGA | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
800 | 5866 | 4.130255 | TGGAGGCCACACTAGTCC | 57.870 | 61.111 | 5.01 | 0.81 | 0.00 | 3.85 |
925 | 5992 | 0.317160 | TCGTGGCTCGTCATCAAACT | 59.683 | 50.000 | 8.94 | 0.00 | 40.80 | 2.66 |
941 | 6008 | 7.919621 | GCTTAAATACTACTACTTGTCCATCGT | 59.080 | 37.037 | 0.00 | 0.00 | 0.00 | 3.73 |
1193 | 6260 | 4.574013 | CGAAATCCAGATCCAGGAAAAGAG | 59.426 | 45.833 | 8.43 | 0.00 | 38.93 | 2.85 |
1216 | 6283 | 4.727507 | TCTCAGTTCATGCTTCCTAGAC | 57.272 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1458 | 6536 | 4.873827 | TGTCTAACAACTCCAAGTCACAAC | 59.126 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
1586 | 6965 | 7.035612 | GGGATAAGCCTAATGAAAACAAAGTG | 58.964 | 38.462 | 0.00 | 0.00 | 36.66 | 3.16 |
1592 | 6971 | 5.656859 | ACCAAGGGATAAGCCTAATGAAAAC | 59.343 | 40.000 | 0.00 | 0.00 | 36.66 | 2.43 |
1604 | 6983 | 2.290071 | ACCAACACGACCAAGGGATAAG | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1672 | 7141 | 7.210174 | TGATATAACTGAAATTCTCTGTCGGG | 58.790 | 38.462 | 0.00 | 0.00 | 35.33 | 5.14 |
1756 | 7254 | 8.283291 | ACATTTCTGTCGAAAGTAAATCAGTTC | 58.717 | 33.333 | 1.71 | 0.00 | 42.01 | 3.01 |
1943 | 7485 | 5.773176 | ACACCCTGGAGAAACGAAATAAAAT | 59.227 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2039 | 7581 | 5.830000 | AAGAAAGTTAACACTGGTTGGAC | 57.170 | 39.130 | 8.61 | 0.00 | 37.88 | 4.02 |
2301 | 8346 | 4.773323 | AGGCTGCAAAACATCTCTAAAC | 57.227 | 40.909 | 0.50 | 0.00 | 0.00 | 2.01 |
2536 | 8589 | 0.599060 | TTTCCGGCCGAAAAATGGTC | 59.401 | 50.000 | 30.73 | 0.00 | 37.53 | 4.02 |
2649 | 8770 | 8.084073 | TGAAGCAATGTTAATGAGAGAAAAAGG | 58.916 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
2798 | 9288 | 3.436704 | ACACAACTGATGGTTCATTAGCG | 59.563 | 43.478 | 0.49 | 0.00 | 35.74 | 4.26 |
2847 | 9389 | 7.936847 | TCATTACTACACCAAGTTCATCAAAGT | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2871 | 9413 | 8.160765 | TGAACTTATTTTTCACTCCCACTATCA | 58.839 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2897 | 9440 | 9.120538 | AGTTCACATTGTATACAAAACAAGTCT | 57.879 | 29.630 | 21.57 | 11.87 | 40.00 | 3.24 |
2950 | 9494 | 3.181507 | CCATAAGTGGCACAAATCACTCG | 60.182 | 47.826 | 21.41 | 0.59 | 44.16 | 4.18 |
3066 | 9613 | 1.267121 | TGAGCTGAGGTCCTTGGTAC | 58.733 | 55.000 | 9.40 | 0.00 | 0.00 | 3.34 |
3122 | 9669 | 5.219343 | TGAGGCATGAATATCAACTCGAT | 57.781 | 39.130 | 0.00 | 0.00 | 38.21 | 3.59 |
3148 | 9695 | 3.075134 | AGGAGAATTCCCAATATCCAGCC | 59.925 | 47.826 | 13.44 | 0.00 | 45.24 | 4.85 |
3464 | 10100 | 2.026636 | CACTTATTTTGGGACGGAGGGA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3465 | 10101 | 2.026636 | TCACTTATTTTGGGACGGAGGG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3466 | 10102 | 3.007635 | GTCACTTATTTTGGGACGGAGG | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3467 | 10103 | 3.933332 | GAGTCACTTATTTTGGGACGGAG | 59.067 | 47.826 | 0.00 | 0.00 | 33.84 | 4.63 |
3468 | 10104 | 3.325425 | TGAGTCACTTATTTTGGGACGGA | 59.675 | 43.478 | 0.00 | 0.00 | 33.84 | 4.69 |
3469 | 10105 | 3.670625 | TGAGTCACTTATTTTGGGACGG | 58.329 | 45.455 | 0.00 | 0.00 | 33.84 | 4.79 |
3470 | 10106 | 4.755123 | AGTTGAGTCACTTATTTTGGGACG | 59.245 | 41.667 | 0.00 | 0.00 | 33.84 | 4.79 |
3471 | 10107 | 6.635030 | AAGTTGAGTCACTTATTTTGGGAC | 57.365 | 37.500 | 0.00 | 0.00 | 35.10 | 4.46 |
3472 | 10108 | 7.776030 | TGTAAAGTTGAGTCACTTATTTTGGGA | 59.224 | 33.333 | 0.00 | 0.00 | 35.87 | 4.37 |
3473 | 10109 | 7.860872 | GTGTAAAGTTGAGTCACTTATTTTGGG | 59.139 | 37.037 | 0.00 | 0.00 | 35.87 | 4.12 |
3474 | 10110 | 8.621286 | AGTGTAAAGTTGAGTCACTTATTTTGG | 58.379 | 33.333 | 0.00 | 0.00 | 35.87 | 3.28 |
3480 | 10116 | 9.880157 | AAAGTTAGTGTAAAGTTGAGTCACTTA | 57.120 | 29.630 | 0.00 | 0.00 | 39.54 | 2.24 |
3481 | 10117 | 8.665685 | CAAAGTTAGTGTAAAGTTGAGTCACTT | 58.334 | 33.333 | 0.00 | 0.00 | 39.54 | 3.16 |
3482 | 10118 | 7.822822 | ACAAAGTTAGTGTAAAGTTGAGTCACT | 59.177 | 33.333 | 0.00 | 0.00 | 41.32 | 3.41 |
3483 | 10119 | 7.971455 | ACAAAGTTAGTGTAAAGTTGAGTCAC | 58.029 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
3484 | 10120 | 9.090692 | GTACAAAGTTAGTGTAAAGTTGAGTCA | 57.909 | 33.333 | 0.00 | 0.00 | 33.40 | 3.41 |
3485 | 10121 | 9.310716 | AGTACAAAGTTAGTGTAAAGTTGAGTC | 57.689 | 33.333 | 0.00 | 0.00 | 33.40 | 3.36 |
3491 | 10127 | 9.978044 | CCTCTTAGTACAAAGTTAGTGTAAAGT | 57.022 | 33.333 | 0.00 | 0.00 | 33.40 | 2.66 |
3492 | 10128 | 9.420551 | CCCTCTTAGTACAAAGTTAGTGTAAAG | 57.579 | 37.037 | 0.00 | 0.00 | 33.40 | 1.85 |
3493 | 10129 | 8.927411 | ACCCTCTTAGTACAAAGTTAGTGTAAA | 58.073 | 33.333 | 0.00 | 0.00 | 33.40 | 2.01 |
3494 | 10130 | 8.482852 | ACCCTCTTAGTACAAAGTTAGTGTAA | 57.517 | 34.615 | 0.00 | 0.00 | 33.40 | 2.41 |
3495 | 10131 | 9.014297 | GTACCCTCTTAGTACAAAGTTAGTGTA | 57.986 | 37.037 | 0.00 | 0.00 | 39.90 | 2.90 |
3496 | 10132 | 6.990908 | ACCCTCTTAGTACAAAGTTAGTGT | 57.009 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
3497 | 10133 | 7.889469 | TGTACCCTCTTAGTACAAAGTTAGTG | 58.111 | 38.462 | 1.45 | 0.00 | 45.28 | 2.74 |
3506 | 10142 | 5.659971 | GGGATTCTTGTACCCTCTTAGTACA | 59.340 | 44.000 | 0.00 | 0.00 | 46.27 | 2.90 |
3507 | 10143 | 5.070180 | GGGGATTCTTGTACCCTCTTAGTAC | 59.930 | 48.000 | 0.00 | 0.00 | 42.86 | 2.73 |
3508 | 10144 | 5.214293 | GGGGATTCTTGTACCCTCTTAGTA | 58.786 | 45.833 | 0.00 | 0.00 | 42.86 | 1.82 |
3509 | 10145 | 4.038633 | GGGGATTCTTGTACCCTCTTAGT | 58.961 | 47.826 | 0.00 | 0.00 | 42.86 | 2.24 |
3510 | 10146 | 4.691326 | GGGGATTCTTGTACCCTCTTAG | 57.309 | 50.000 | 0.00 | 0.00 | 42.86 | 2.18 |
3516 | 10152 | 3.732048 | TTTGAGGGGATTCTTGTACCC | 57.268 | 47.619 | 0.00 | 0.00 | 43.69 | 3.69 |
3517 | 10153 | 5.321927 | TCTTTTTGAGGGGATTCTTGTACC | 58.678 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
3518 | 10154 | 6.894339 | TTCTTTTTGAGGGGATTCTTGTAC | 57.106 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
3519 | 10155 | 9.594936 | TTAATTCTTTTTGAGGGGATTCTTGTA | 57.405 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3520 | 10156 | 8.491045 | TTAATTCTTTTTGAGGGGATTCTTGT | 57.509 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
3521 | 10157 | 9.948964 | ATTTAATTCTTTTTGAGGGGATTCTTG | 57.051 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
3818 | 10615 | 5.545723 | TCAGAAGGGAGAGAAGTTTCAAGAT | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3827 | 10624 | 4.757594 | CTGTTCATCAGAAGGGAGAGAAG | 58.242 | 47.826 | 0.00 | 0.00 | 46.27 | 2.85 |
3830 | 10627 | 2.738000 | CGCTGTTCATCAGAAGGGAGAG | 60.738 | 54.545 | 0.00 | 0.00 | 46.27 | 3.20 |
3831 | 10628 | 1.205655 | CGCTGTTCATCAGAAGGGAGA | 59.794 | 52.381 | 0.00 | 0.00 | 46.27 | 3.71 |
3832 | 10629 | 1.066573 | ACGCTGTTCATCAGAAGGGAG | 60.067 | 52.381 | 0.00 | 0.00 | 46.27 | 4.30 |
3835 | 10632 | 5.812642 | ACTTATTACGCTGTTCATCAGAAGG | 59.187 | 40.000 | 0.00 | 0.00 | 46.27 | 3.46 |
3850 | 10647 | 1.635844 | TCAGCGCACCACTTATTACG | 58.364 | 50.000 | 11.47 | 0.00 | 0.00 | 3.18 |
3862 | 10659 | 2.672651 | CCACCAACCATCAGCGCA | 60.673 | 61.111 | 11.47 | 0.00 | 0.00 | 6.09 |
3935 | 10732 | 1.011904 | CATTTGCGTCGATGCCTCG | 60.012 | 57.895 | 26.06 | 7.61 | 46.41 | 4.63 |
3946 | 10743 | 0.162933 | CAAAGCTTGCTGCATTTGCG | 59.837 | 50.000 | 12.57 | 0.08 | 45.94 | 4.85 |
3977 | 10774 | 1.166531 | ACTGGTGCACCGCTTTCTTC | 61.167 | 55.000 | 30.07 | 4.16 | 39.43 | 2.87 |
4116 | 10938 | 3.673594 | CGAGTCAAACGATCCTACAGCTT | 60.674 | 47.826 | 0.00 | 0.00 | 0.00 | 3.74 |
4157 | 10979 | 3.536570 | GAAGAGAACCCATTGCTCTACC | 58.463 | 50.000 | 0.00 | 0.00 | 38.00 | 3.18 |
4158 | 10980 | 3.198853 | AGGAAGAGAACCCATTGCTCTAC | 59.801 | 47.826 | 0.00 | 0.00 | 38.00 | 2.59 |
4159 | 10981 | 3.454858 | AGGAAGAGAACCCATTGCTCTA | 58.545 | 45.455 | 0.00 | 0.00 | 38.00 | 2.43 |
4185 | 11007 | 2.935849 | TGCCTATGTATGCACTTGAACG | 59.064 | 45.455 | 0.00 | 0.00 | 31.31 | 3.95 |
4258 | 11080 | 5.107065 | GCGTGAAACTTGAGCTACAACTTAT | 60.107 | 40.000 | 0.00 | 0.00 | 34.56 | 1.73 |
4265 | 11087 | 3.241678 | CGTATGCGTGAAACTTGAGCTAC | 60.242 | 47.826 | 0.00 | 0.00 | 31.75 | 3.58 |
4271 | 11093 | 1.153353 | ACCCGTATGCGTGAAACTTG | 58.847 | 50.000 | 1.69 | 0.00 | 36.15 | 3.16 |
4280 | 11102 | 6.354039 | AGAAATTTAACTAACCCGTATGCG | 57.646 | 37.500 | 0.00 | 0.00 | 37.95 | 4.73 |
4281 | 11103 | 8.429493 | AGTAGAAATTTAACTAACCCGTATGC | 57.571 | 34.615 | 4.29 | 0.00 | 0.00 | 3.14 |
4283 | 11105 | 9.755804 | GCTAGTAGAAATTTAACTAACCCGTAT | 57.244 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
4284 | 11106 | 8.748412 | TGCTAGTAGAAATTTAACTAACCCGTA | 58.252 | 33.333 | 0.00 | 1.58 | 0.00 | 4.02 |
4285 | 11107 | 7.614494 | TGCTAGTAGAAATTTAACTAACCCGT | 58.386 | 34.615 | 0.00 | 0.00 | 0.00 | 5.28 |
4302 | 11124 | 2.667137 | GCTAAGGCGACATGCTAGTAG | 58.333 | 52.381 | 0.00 | 0.00 | 45.43 | 2.57 |
4317 | 11243 | 2.280186 | CCGCTAAGGCCCGCTAAG | 60.280 | 66.667 | 0.00 | 0.00 | 34.44 | 2.18 |
4356 | 11282 | 3.118629 | AGCATGGATTGTCGTGACTACAT | 60.119 | 43.478 | 1.23 | 0.00 | 0.00 | 2.29 |
4361 | 11287 | 2.483877 | TCAAAGCATGGATTGTCGTGAC | 59.516 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
4380 | 11306 | 3.324846 | AGGATTACAGTTGCTCACACTCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
4383 | 11309 | 5.239525 | AGAAAAGGATTACAGTTGCTCACAC | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 3.82 |
4424 | 11350 | 8.811017 | AGAAAGTCAGAATCTAGAACATCTGAA | 58.189 | 33.333 | 25.55 | 14.39 | 46.98 | 3.02 |
4589 | 11577 | 7.862873 | GCCTTGTGAAATTATGGTAGCTATTTC | 59.137 | 37.037 | 9.49 | 9.49 | 37.46 | 2.17 |
4638 | 11629 | 7.665974 | ACGGAAATTAAAGAAGAAAGGATCAGT | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
4746 | 11738 | 8.682710 | GGCAGGTTGTATGATAAGAATAAAACA | 58.317 | 33.333 | 0.00 | 0.00 | 31.78 | 2.83 |
4754 | 11746 | 5.189736 | ACTGAAGGCAGGTTGTATGATAAGA | 59.810 | 40.000 | 0.00 | 0.00 | 46.60 | 2.10 |
4769 | 11761 | 1.965414 | TGGATCCCTAACTGAAGGCA | 58.035 | 50.000 | 9.90 | 0.00 | 35.09 | 4.75 |
4926 | 11923 | 4.891992 | ATGGGTCTGGTAGATAATTCCG | 57.108 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
4930 | 11927 | 5.727630 | ACCACTATGGGTCTGGTAGATAAT | 58.272 | 41.667 | 0.00 | 0.00 | 43.37 | 1.28 |
4993 | 11995 | 0.526211 | GCAAAGAGCCCCTTAAACCG | 59.474 | 55.000 | 0.00 | 0.00 | 37.23 | 4.44 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.