Multiple sequence alignment - TraesCS5B01G496000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G496000 chr5B 100.000 2877 0 0 1 2877 663176254 663173378 0.000000e+00 5313.0
1 TraesCS5B01G496000 chr5D 89.429 2261 137 40 638 2867 527141804 527139615 0.000000e+00 2758.0
2 TraesCS5B01G496000 chr5A 90.645 1379 91 24 758 2106 654124911 654123541 0.000000e+00 1797.0
3 TraesCS5B01G496000 chr5A 89.326 712 61 11 2151 2859 654123540 654122841 0.000000e+00 880.0
4 TraesCS5B01G496000 chr4A 74.897 486 75 22 2086 2543 296909533 296909999 8.190000e-41 178.0
5 TraesCS5B01G496000 chr4B 82.353 102 16 2 2375 2475 148134183 148134283 1.420000e-13 87.9
6 TraesCS5B01G496000 chr4B 81.373 102 17 2 2375 2475 148167246 148167346 6.610000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G496000 chr5B 663173378 663176254 2876 True 5313.0 5313 100.0000 1 2877 1 chr5B.!!$R1 2876
1 TraesCS5B01G496000 chr5D 527139615 527141804 2189 True 2758.0 2758 89.4290 638 2867 1 chr5D.!!$R1 2229
2 TraesCS5B01G496000 chr5A 654122841 654124911 2070 True 1338.5 1797 89.9855 758 2859 2 chr5A.!!$R1 2101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.030773 TGATCTAGCTTAGCGCGGTG 59.969 55.0 23.02 6.11 45.59 4.94 F
131 132 0.030908 GATCTAGCTTAGCGCGGTGT 59.969 55.0 23.02 5.28 45.59 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1630 0.099259 ACACGCGCCATTCATCATTG 59.901 50.0 5.73 0.0 0.00 2.82 R
2100 2151 2.038033 TGTGGTTAGCCGCCTATTATCC 59.962 50.0 6.71 0.0 44.42 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.405831 ACATCAGTTGTGACATCACTGG 58.594 45.455 15.21 5.25 46.55 4.00
22 23 2.549064 TCAGTTGTGACATCACTGGG 57.451 50.000 15.21 1.42 46.55 4.45
23 24 1.072173 TCAGTTGTGACATCACTGGGG 59.928 52.381 15.21 1.74 46.55 4.96
24 25 0.401738 AGTTGTGACATCACTGGGGG 59.598 55.000 12.98 0.00 46.55 5.40
25 26 0.110486 GTTGTGACATCACTGGGGGT 59.890 55.000 12.98 0.00 46.55 4.95
26 27 0.110295 TTGTGACATCACTGGGGGTG 59.890 55.000 12.98 0.00 46.55 4.61
27 28 1.002134 GTGACATCACTGGGGGTGG 60.002 63.158 4.72 0.00 45.38 4.61
28 29 1.151921 TGACATCACTGGGGGTGGA 60.152 57.895 0.00 0.00 45.38 4.02
29 30 1.299976 GACATCACTGGGGGTGGAC 59.700 63.158 0.00 0.00 45.38 4.02
30 31 2.268920 CATCACTGGGGGTGGACG 59.731 66.667 0.00 0.00 45.38 4.79
31 32 2.203938 ATCACTGGGGGTGGACGT 60.204 61.111 0.00 0.00 45.38 4.34
32 33 1.079621 ATCACTGGGGGTGGACGTA 59.920 57.895 0.00 0.00 45.38 3.57
33 34 0.976073 ATCACTGGGGGTGGACGTAG 60.976 60.000 0.00 0.00 45.38 3.51
34 35 3.001406 ACTGGGGGTGGACGTAGC 61.001 66.667 0.00 0.00 0.00 3.58
35 36 3.000819 CTGGGGGTGGACGTAGCA 61.001 66.667 0.00 0.00 0.00 3.49
36 37 2.527123 TGGGGGTGGACGTAGCAA 60.527 61.111 0.00 0.00 0.00 3.91
37 38 2.119484 CTGGGGGTGGACGTAGCAAA 62.119 60.000 0.00 0.00 0.00 3.68
38 39 1.673337 GGGGGTGGACGTAGCAAAC 60.673 63.158 0.00 0.00 0.00 2.93
39 40 1.071814 GGGGTGGACGTAGCAAACA 59.928 57.895 0.00 0.00 0.00 2.83
40 41 0.535553 GGGGTGGACGTAGCAAACAA 60.536 55.000 0.00 0.00 0.00 2.83
41 42 0.589708 GGGTGGACGTAGCAAACAAC 59.410 55.000 0.00 0.00 0.00 3.32
42 43 1.301423 GGTGGACGTAGCAAACAACA 58.699 50.000 0.00 0.00 0.00 3.33
43 44 1.877443 GGTGGACGTAGCAAACAACAT 59.123 47.619 0.00 0.00 0.00 2.71
44 45 3.068560 GGTGGACGTAGCAAACAACATA 58.931 45.455 0.00 0.00 0.00 2.29
45 46 3.124636 GGTGGACGTAGCAAACAACATAG 59.875 47.826 0.00 0.00 0.00 2.23
46 47 3.744426 GTGGACGTAGCAAACAACATAGT 59.256 43.478 0.00 0.00 0.00 2.12
47 48 4.212636 GTGGACGTAGCAAACAACATAGTT 59.787 41.667 0.00 0.00 0.00 2.24
48 49 4.212425 TGGACGTAGCAAACAACATAGTTG 59.788 41.667 8.24 8.24 0.00 3.16
49 50 4.141855 ACGTAGCAAACAACATAGTTGC 57.858 40.909 9.60 0.00 0.00 4.17
50 51 3.562141 ACGTAGCAAACAACATAGTTGCA 59.438 39.130 9.60 0.00 32.06 4.08
51 52 4.151070 CGTAGCAAACAACATAGTTGCAG 58.849 43.478 9.60 1.99 32.06 4.41
52 53 3.017265 AGCAAACAACATAGTTGCAGC 57.983 42.857 9.60 10.63 32.06 5.25
53 54 2.361757 AGCAAACAACATAGTTGCAGCA 59.638 40.909 17.63 0.00 32.06 4.41
54 55 3.122297 GCAAACAACATAGTTGCAGCAA 58.878 40.909 2.83 2.83 0.00 3.91
55 56 3.555139 GCAAACAACATAGTTGCAGCAAA 59.445 39.130 10.11 0.00 0.00 3.68
56 57 4.033817 GCAAACAACATAGTTGCAGCAAAA 59.966 37.500 10.11 1.15 0.00 2.44
57 58 5.447010 GCAAACAACATAGTTGCAGCAAAAA 60.447 36.000 10.11 0.74 0.00 1.94
58 59 5.971895 AACAACATAGTTGCAGCAAAAAG 57.028 34.783 10.11 3.05 0.00 2.27
59 60 5.009854 ACAACATAGTTGCAGCAAAAAGT 57.990 34.783 10.11 3.71 0.00 2.66
60 61 5.418676 ACAACATAGTTGCAGCAAAAAGTT 58.581 33.333 10.11 9.71 0.00 2.66
61 62 5.291614 ACAACATAGTTGCAGCAAAAAGTTG 59.708 36.000 26.31 26.31 38.71 3.16
69 70 3.628958 CAAAAAGTTGCCGCTGCC 58.371 55.556 0.00 0.00 36.33 4.85
70 71 2.027460 AAAAAGTTGCCGCTGCCG 59.973 55.556 0.00 0.00 36.33 5.69
71 72 4.645921 AAAAGTTGCCGCTGCCGC 62.646 61.111 6.01 6.01 36.33 6.53
94 95 4.221422 GCAGCATCGCCGGGAGTA 62.221 66.667 2.18 0.00 0.00 2.59
95 96 2.028190 CAGCATCGCCGGGAGTAG 59.972 66.667 2.18 0.00 0.00 2.57
96 97 3.917760 AGCATCGCCGGGAGTAGC 61.918 66.667 2.18 3.53 0.00 3.58
97 98 4.971125 GCATCGCCGGGAGTAGCC 62.971 72.222 2.18 0.00 0.00 3.93
106 107 4.401657 GGAGTAGCCCCATGGAGT 57.598 61.111 15.22 0.00 0.00 3.85
107 108 2.621486 GGAGTAGCCCCATGGAGTT 58.379 57.895 15.22 0.00 0.00 3.01
108 109 0.181350 GGAGTAGCCCCATGGAGTTG 59.819 60.000 15.22 0.00 0.00 3.16
109 110 0.464554 GAGTAGCCCCATGGAGTTGC 60.465 60.000 15.22 10.29 0.00 4.17
110 111 1.453928 GTAGCCCCATGGAGTTGCC 60.454 63.158 15.22 0.00 37.10 4.52
111 112 1.619363 TAGCCCCATGGAGTTGCCT 60.619 57.895 15.22 2.35 37.63 4.75
112 113 1.925285 TAGCCCCATGGAGTTGCCTG 61.925 60.000 15.22 0.00 37.63 4.85
113 114 3.089838 CCCCATGGAGTTGCCTGA 58.910 61.111 15.22 0.00 37.63 3.86
114 115 1.616921 CCCCATGGAGTTGCCTGAT 59.383 57.895 15.22 0.00 37.63 2.90
115 116 0.466922 CCCCATGGAGTTGCCTGATC 60.467 60.000 15.22 0.00 37.63 2.92
116 117 0.549950 CCCATGGAGTTGCCTGATCT 59.450 55.000 15.22 0.00 37.63 2.75
117 118 1.770658 CCCATGGAGTTGCCTGATCTA 59.229 52.381 15.22 0.00 37.63 1.98
118 119 2.224475 CCCATGGAGTTGCCTGATCTAG 60.224 54.545 15.22 0.00 37.63 2.43
119 120 2.492012 CATGGAGTTGCCTGATCTAGC 58.508 52.381 0.00 0.00 37.63 3.42
120 121 1.871418 TGGAGTTGCCTGATCTAGCT 58.129 50.000 8.66 0.00 37.63 3.32
121 122 2.191400 TGGAGTTGCCTGATCTAGCTT 58.809 47.619 0.00 0.00 37.63 3.74
122 123 3.374764 TGGAGTTGCCTGATCTAGCTTA 58.625 45.455 0.00 0.00 37.63 3.09
123 124 3.386078 TGGAGTTGCCTGATCTAGCTTAG 59.614 47.826 0.00 0.00 37.63 2.18
124 125 3.389221 GAGTTGCCTGATCTAGCTTAGC 58.611 50.000 0.00 0.00 0.00 3.09
125 126 2.131183 GTTGCCTGATCTAGCTTAGCG 58.869 52.381 0.00 0.00 0.00 4.26
126 127 0.032678 TGCCTGATCTAGCTTAGCGC 59.967 55.000 0.00 0.00 39.57 5.92
127 128 1.006314 GCCTGATCTAGCTTAGCGCG 61.006 60.000 0.00 0.00 45.59 6.86
128 129 0.387878 CCTGATCTAGCTTAGCGCGG 60.388 60.000 8.83 0.00 45.59 6.46
129 130 0.312416 CTGATCTAGCTTAGCGCGGT 59.688 55.000 17.70 17.70 45.59 5.68
130 131 0.030773 TGATCTAGCTTAGCGCGGTG 59.969 55.000 23.02 6.11 45.59 4.94
131 132 0.030908 GATCTAGCTTAGCGCGGTGT 59.969 55.000 23.02 5.28 45.59 4.16
132 133 0.460311 ATCTAGCTTAGCGCGGTGTT 59.540 50.000 23.02 5.57 45.59 3.32
133 134 0.179145 TCTAGCTTAGCGCGGTGTTC 60.179 55.000 23.02 9.19 45.59 3.18
134 135 1.472276 CTAGCTTAGCGCGGTGTTCG 61.472 60.000 23.02 7.31 45.59 3.95
135 136 2.203972 TAGCTTAGCGCGGTGTTCGT 62.204 55.000 23.02 4.14 45.59 3.85
136 137 3.067846 GCTTAGCGCGGTGTTCGTC 62.068 63.158 23.02 0.03 41.72 4.20
137 138 2.774951 CTTAGCGCGGTGTTCGTCG 61.775 63.158 23.02 0.00 41.72 5.12
138 139 4.764336 TAGCGCGGTGTTCGTCGG 62.764 66.667 23.02 0.00 41.72 4.79
142 143 4.955774 GCGGTGTTCGTCGGGTGT 62.956 66.667 0.00 0.00 41.72 4.16
143 144 3.033764 CGGTGTTCGTCGGGTGTG 61.034 66.667 0.00 0.00 0.00 3.82
144 145 2.663852 GGTGTTCGTCGGGTGTGG 60.664 66.667 0.00 0.00 0.00 4.17
145 146 2.663852 GTGTTCGTCGGGTGTGGG 60.664 66.667 0.00 0.00 0.00 4.61
146 147 3.931247 TGTTCGTCGGGTGTGGGG 61.931 66.667 0.00 0.00 0.00 4.96
147 148 3.618750 GTTCGTCGGGTGTGGGGA 61.619 66.667 0.00 0.00 0.00 4.81
148 149 3.307906 TTCGTCGGGTGTGGGGAG 61.308 66.667 0.00 0.00 0.00 4.30
149 150 3.813606 TTCGTCGGGTGTGGGGAGA 62.814 63.158 0.00 0.00 0.00 3.71
150 151 3.760035 CGTCGGGTGTGGGGAGAG 61.760 72.222 0.00 0.00 0.00 3.20
151 152 2.283676 GTCGGGTGTGGGGAGAGA 60.284 66.667 0.00 0.00 0.00 3.10
152 153 2.037367 TCGGGTGTGGGGAGAGAG 59.963 66.667 0.00 0.00 0.00 3.20
153 154 3.077556 CGGGTGTGGGGAGAGAGG 61.078 72.222 0.00 0.00 0.00 3.69
154 155 2.689034 GGGTGTGGGGAGAGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
155 156 2.689034 GGTGTGGGGAGAGAGGGG 60.689 72.222 0.00 0.00 0.00 4.79
156 157 2.689034 GTGTGGGGAGAGAGGGGG 60.689 72.222 0.00 0.00 0.00 5.40
173 174 2.828549 GGGGGTAGCGCAACCATG 60.829 66.667 11.47 0.00 41.67 3.66
174 175 2.270850 GGGGTAGCGCAACCATGA 59.729 61.111 11.47 0.00 41.67 3.07
175 176 1.377987 GGGGTAGCGCAACCATGAA 60.378 57.895 11.47 0.00 41.67 2.57
176 177 1.376609 GGGGTAGCGCAACCATGAAG 61.377 60.000 11.47 0.00 41.67 3.02
177 178 1.376609 GGGTAGCGCAACCATGAAGG 61.377 60.000 11.47 0.00 41.67 3.46
178 179 1.376609 GGTAGCGCAACCATGAAGGG 61.377 60.000 11.47 0.00 43.89 3.95
179 180 1.077787 TAGCGCAACCATGAAGGGG 60.078 57.895 11.47 0.00 43.89 4.79
180 181 2.550699 TAGCGCAACCATGAAGGGGG 62.551 60.000 11.47 0.00 43.89 5.40
181 182 2.035626 CGCAACCATGAAGGGGGT 59.964 61.111 0.00 0.00 43.89 4.95
182 183 2.046285 CGCAACCATGAAGGGGGTC 61.046 63.158 0.00 0.00 43.89 4.46
183 184 2.046285 GCAACCATGAAGGGGGTCG 61.046 63.158 0.00 0.00 43.89 4.79
184 185 1.378514 CAACCATGAAGGGGGTCGG 60.379 63.158 0.00 0.00 43.89 4.79
185 186 1.850755 AACCATGAAGGGGGTCGGT 60.851 57.895 0.00 0.00 43.89 4.69
186 187 1.848886 AACCATGAAGGGGGTCGGTC 61.849 60.000 0.00 0.00 43.89 4.79
187 188 1.995626 CCATGAAGGGGGTCGGTCT 60.996 63.158 0.00 0.00 0.00 3.85
188 189 0.689745 CCATGAAGGGGGTCGGTCTA 60.690 60.000 0.00 0.00 0.00 2.59
189 190 1.424638 CATGAAGGGGGTCGGTCTAT 58.575 55.000 0.00 0.00 0.00 1.98
190 191 2.605257 CATGAAGGGGGTCGGTCTATA 58.395 52.381 0.00 0.00 0.00 1.31
191 192 2.376695 TGAAGGGGGTCGGTCTATAG 57.623 55.000 0.00 0.00 0.00 1.31
192 193 1.854939 TGAAGGGGGTCGGTCTATAGA 59.145 52.381 0.00 0.00 0.00 1.98
193 194 2.158505 TGAAGGGGGTCGGTCTATAGAG 60.159 54.545 1.64 0.00 0.00 2.43
194 195 1.830486 AGGGGGTCGGTCTATAGAGA 58.170 55.000 1.64 0.00 0.00 3.10
204 205 2.481854 GTCTATAGAGACGAGGCGACA 58.518 52.381 1.64 0.00 42.73 4.35
205 206 2.871022 GTCTATAGAGACGAGGCGACAA 59.129 50.000 1.64 0.00 42.73 3.18
206 207 3.499157 GTCTATAGAGACGAGGCGACAAT 59.501 47.826 1.64 0.00 42.73 2.71
207 208 2.783828 ATAGAGACGAGGCGACAATG 57.216 50.000 0.00 0.00 0.00 2.82
208 209 1.746470 TAGAGACGAGGCGACAATGA 58.254 50.000 0.00 0.00 0.00 2.57
209 210 0.171455 AGAGACGAGGCGACAATGAC 59.829 55.000 0.00 0.00 0.00 3.06
210 211 0.171455 GAGACGAGGCGACAATGACT 59.829 55.000 0.00 0.00 0.00 3.41
211 212 0.171455 AGACGAGGCGACAATGACTC 59.829 55.000 0.00 0.00 0.00 3.36
212 213 3.680525 CGAGGCGACAATGACTCG 58.319 61.111 4.46 4.46 45.34 4.18
213 214 1.874019 CGAGGCGACAATGACTCGG 60.874 63.158 11.01 0.00 46.44 4.63
214 215 1.215647 GAGGCGACAATGACTCGGT 59.784 57.895 0.00 0.00 0.00 4.69
215 216 0.802607 GAGGCGACAATGACTCGGTC 60.803 60.000 0.00 0.00 0.00 4.79
217 218 3.374330 CGACAATGACTCGGTCGC 58.626 61.111 0.00 0.00 46.25 5.19
218 219 1.443702 CGACAATGACTCGGTCGCA 60.444 57.895 0.00 0.00 46.25 5.10
219 220 1.406219 CGACAATGACTCGGTCGCAG 61.406 60.000 0.00 0.00 46.25 5.18
220 221 1.687494 GACAATGACTCGGTCGCAGC 61.687 60.000 0.00 0.00 34.95 5.25
221 222 2.125512 AATGACTCGGTCGCAGCC 60.126 61.111 0.00 0.00 34.95 4.85
222 223 2.942796 AATGACTCGGTCGCAGCCA 61.943 57.895 0.00 0.00 34.95 4.75
223 224 2.842394 AATGACTCGGTCGCAGCCAG 62.842 60.000 0.00 0.00 34.95 4.85
224 225 3.749064 GACTCGGTCGCAGCCAGA 61.749 66.667 0.00 0.00 0.00 3.86
225 226 3.069980 GACTCGGTCGCAGCCAGAT 62.070 63.158 0.00 0.00 0.00 2.90
226 227 2.584418 CTCGGTCGCAGCCAGATG 60.584 66.667 0.00 0.00 0.00 2.90
227 228 4.147449 TCGGTCGCAGCCAGATGG 62.147 66.667 0.00 0.00 38.53 3.51
237 238 3.944123 CCAGATGGCCATGGGTTG 58.056 61.111 26.56 15.22 32.63 3.77
238 239 2.428925 CCAGATGGCCATGGGTTGC 61.429 63.158 26.56 7.45 32.63 4.17
239 240 1.683025 CAGATGGCCATGGGTTGCA 60.683 57.895 26.56 0.00 0.00 4.08
240 241 1.380785 AGATGGCCATGGGTTGCAG 60.381 57.895 26.56 0.00 0.00 4.41
241 242 3.078836 ATGGCCATGGGTTGCAGC 61.079 61.111 20.04 0.00 0.00 5.25
242 243 3.908904 ATGGCCATGGGTTGCAGCA 62.909 57.895 20.04 0.00 0.00 4.41
243 244 3.078836 GGCCATGGGTTGCAGCAT 61.079 61.111 15.13 0.00 0.00 3.79
244 245 2.185867 GCCATGGGTTGCAGCATG 59.814 61.111 15.13 0.00 40.87 4.06
245 246 2.352821 GCCATGGGTTGCAGCATGA 61.353 57.895 15.13 0.00 39.69 3.07
246 247 1.514087 CCATGGGTTGCAGCATGAC 59.486 57.895 2.85 0.00 39.69 3.06
247 248 1.514087 CATGGGTTGCAGCATGACC 59.486 57.895 7.65 7.65 39.69 4.02
248 249 0.968901 CATGGGTTGCAGCATGACCT 60.969 55.000 14.73 0.00 39.69 3.85
249 250 0.968901 ATGGGTTGCAGCATGACCTG 60.969 55.000 14.73 0.00 39.69 4.00
275 276 3.885521 GCTTGATGGCGCAGGAGC 61.886 66.667 10.83 7.24 37.42 4.70
276 277 2.124819 CTTGATGGCGCAGGAGCT 60.125 61.111 10.83 0.00 39.10 4.09
277 278 2.124983 TTGATGGCGCAGGAGCTC 60.125 61.111 10.83 4.71 39.10 4.09
278 279 4.519437 TGATGGCGCAGGAGCTCG 62.519 66.667 10.83 0.00 39.10 5.03
300 301 6.695292 CGCAAGAAGCAGTAATTGAAAAAT 57.305 33.333 0.00 0.00 46.13 1.82
301 302 6.519315 CGCAAGAAGCAGTAATTGAAAAATG 58.481 36.000 0.00 0.00 46.13 2.32
302 303 6.301861 GCAAGAAGCAGTAATTGAAAAATGC 58.698 36.000 0.00 0.00 44.79 3.56
303 304 6.519315 CAAGAAGCAGTAATTGAAAAATGCG 58.481 36.000 0.00 0.00 38.65 4.73
304 305 5.163513 AGAAGCAGTAATTGAAAAATGCGG 58.836 37.500 0.00 0.00 38.65 5.69
305 306 4.782019 AGCAGTAATTGAAAAATGCGGA 57.218 36.364 0.00 0.00 38.65 5.54
306 307 5.329035 AGCAGTAATTGAAAAATGCGGAT 57.671 34.783 0.00 0.00 38.65 4.18
307 308 5.104374 AGCAGTAATTGAAAAATGCGGATG 58.896 37.500 0.00 0.00 38.65 3.51
308 309 4.259930 GCAGTAATTGAAAAATGCGGATGC 60.260 41.667 0.00 0.00 43.20 3.91
309 310 5.104374 CAGTAATTGAAAAATGCGGATGCT 58.896 37.500 0.00 0.00 43.34 3.79
310 311 5.005012 CAGTAATTGAAAAATGCGGATGCTG 59.995 40.000 0.00 0.00 43.34 4.41
311 312 2.367030 TTGAAAAATGCGGATGCTGG 57.633 45.000 0.00 0.00 43.34 4.85
312 313 0.108709 TGAAAAATGCGGATGCTGGC 60.109 50.000 0.00 0.00 43.34 4.85
313 314 1.141591 GAAAAATGCGGATGCTGGCG 61.142 55.000 0.00 0.00 43.34 5.69
314 315 2.561549 AAAAATGCGGATGCTGGCGG 62.562 55.000 0.00 0.00 43.34 6.13
340 341 3.104766 GCATCGATGGCAGGTGTG 58.895 61.111 26.00 0.00 0.00 3.82
371 372 4.452733 GGGGCGAACACGGGAGAG 62.453 72.222 0.00 0.00 0.00 3.20
372 373 4.452733 GGGCGAACACGGGAGAGG 62.453 72.222 0.00 0.00 0.00 3.69
373 374 3.379445 GGCGAACACGGGAGAGGA 61.379 66.667 0.00 0.00 0.00 3.71
374 375 2.654877 GCGAACACGGGAGAGGAA 59.345 61.111 0.00 0.00 0.00 3.36
375 376 1.737008 GCGAACACGGGAGAGGAAC 60.737 63.158 0.00 0.00 0.00 3.62
376 377 1.663739 CGAACACGGGAGAGGAACA 59.336 57.895 0.00 0.00 0.00 3.18
377 378 0.246635 CGAACACGGGAGAGGAACAT 59.753 55.000 0.00 0.00 0.00 2.71
378 379 1.726853 GAACACGGGAGAGGAACATG 58.273 55.000 0.00 0.00 0.00 3.21
379 380 1.002087 GAACACGGGAGAGGAACATGT 59.998 52.381 0.00 0.00 0.00 3.21
380 381 0.321671 ACACGGGAGAGGAACATGTG 59.678 55.000 0.00 0.00 0.00 3.21
381 382 1.021390 CACGGGAGAGGAACATGTGC 61.021 60.000 0.00 0.00 0.00 4.57
382 383 1.811266 CGGGAGAGGAACATGTGCG 60.811 63.158 0.00 0.00 0.00 5.34
383 384 1.296715 GGGAGAGGAACATGTGCGT 59.703 57.895 0.00 0.00 0.00 5.24
384 385 0.741221 GGGAGAGGAACATGTGCGTC 60.741 60.000 17.29 17.29 0.00 5.19
385 386 1.078759 GGAGAGGAACATGTGCGTCG 61.079 60.000 18.56 0.00 0.00 5.12
386 387 1.078759 GAGAGGAACATGTGCGTCGG 61.079 60.000 18.56 0.00 0.00 4.79
387 388 2.740714 GAGGAACATGTGCGTCGGC 61.741 63.158 10.69 0.00 40.52 5.54
388 389 4.147322 GGAACATGTGCGTCGGCG 62.147 66.667 4.29 4.29 44.10 6.46
389 390 4.147322 GAACATGTGCGTCGGCGG 62.147 66.667 13.05 0.00 44.10 6.13
390 391 4.980805 AACATGTGCGTCGGCGGT 62.981 61.111 13.05 0.00 44.10 5.68
398 399 2.973600 CGTCGGCGGTGGGAAAAA 60.974 61.111 7.21 0.00 0.00 1.94
399 400 2.329614 CGTCGGCGGTGGGAAAAAT 61.330 57.895 7.21 0.00 0.00 1.82
400 401 1.211709 GTCGGCGGTGGGAAAAATG 59.788 57.895 7.21 0.00 0.00 2.32
401 402 1.073373 TCGGCGGTGGGAAAAATGA 59.927 52.632 7.21 0.00 0.00 2.57
402 403 0.537600 TCGGCGGTGGGAAAAATGAA 60.538 50.000 7.21 0.00 0.00 2.57
403 404 0.530288 CGGCGGTGGGAAAAATGAAT 59.470 50.000 0.00 0.00 0.00 2.57
404 405 1.735369 CGGCGGTGGGAAAAATGAATG 60.735 52.381 0.00 0.00 0.00 2.67
405 406 1.405391 GGCGGTGGGAAAAATGAATGG 60.405 52.381 0.00 0.00 0.00 3.16
406 407 1.548269 GCGGTGGGAAAAATGAATGGA 59.452 47.619 0.00 0.00 0.00 3.41
407 408 2.168313 GCGGTGGGAAAAATGAATGGAT 59.832 45.455 0.00 0.00 0.00 3.41
408 409 3.784338 CGGTGGGAAAAATGAATGGATG 58.216 45.455 0.00 0.00 0.00 3.51
409 410 3.195396 CGGTGGGAAAAATGAATGGATGT 59.805 43.478 0.00 0.00 0.00 3.06
410 411 4.400884 CGGTGGGAAAAATGAATGGATGTA 59.599 41.667 0.00 0.00 0.00 2.29
411 412 5.450412 CGGTGGGAAAAATGAATGGATGTAG 60.450 44.000 0.00 0.00 0.00 2.74
412 413 5.656416 GGTGGGAAAAATGAATGGATGTAGA 59.344 40.000 0.00 0.00 0.00 2.59
413 414 6.183360 GGTGGGAAAAATGAATGGATGTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
414 415 6.603201 GTGGGAAAAATGAATGGATGTAGAGA 59.397 38.462 0.00 0.00 0.00 3.10
415 416 6.603201 TGGGAAAAATGAATGGATGTAGAGAC 59.397 38.462 0.00 0.00 0.00 3.36
416 417 6.830838 GGGAAAAATGAATGGATGTAGAGACT 59.169 38.462 0.00 0.00 0.00 3.24
417 418 7.012799 GGGAAAAATGAATGGATGTAGAGACTC 59.987 40.741 0.00 0.00 0.00 3.36
418 419 7.012799 GGAAAAATGAATGGATGTAGAGACTCC 59.987 40.741 0.00 0.00 0.00 3.85
419 420 6.566079 AAATGAATGGATGTAGAGACTCCA 57.434 37.500 0.00 0.00 42.95 3.86
421 422 5.541953 TGAATGGATGTAGAGACTCCATG 57.458 43.478 4.19 0.00 46.57 3.66
422 423 5.211201 TGAATGGATGTAGAGACTCCATGA 58.789 41.667 4.19 0.00 46.57 3.07
423 424 5.662657 TGAATGGATGTAGAGACTCCATGAA 59.337 40.000 4.19 0.00 46.57 2.57
424 425 6.156775 TGAATGGATGTAGAGACTCCATGAAA 59.843 38.462 4.19 0.00 46.57 2.69
425 426 5.604758 TGGATGTAGAGACTCCATGAAAG 57.395 43.478 0.00 0.00 34.17 2.62
426 427 4.406972 TGGATGTAGAGACTCCATGAAAGG 59.593 45.833 0.00 0.00 34.17 3.11
427 428 4.651503 GGATGTAGAGACTCCATGAAAGGA 59.348 45.833 0.00 0.00 36.00 3.36
428 429 5.306678 GGATGTAGAGACTCCATGAAAGGAT 59.693 44.000 0.00 0.00 36.99 3.24
429 430 6.495181 GGATGTAGAGACTCCATGAAAGGATA 59.505 42.308 0.00 0.00 36.99 2.59
430 431 7.015682 GGATGTAGAGACTCCATGAAAGGATAA 59.984 40.741 0.00 0.00 36.99 1.75
431 432 7.353414 TGTAGAGACTCCATGAAAGGATAAG 57.647 40.000 0.00 0.00 36.99 1.73
432 433 5.885449 AGAGACTCCATGAAAGGATAAGG 57.115 43.478 0.00 0.00 36.99 2.69
433 434 4.102367 AGAGACTCCATGAAAGGATAAGGC 59.898 45.833 0.00 0.00 36.99 4.35
434 435 3.782523 AGACTCCATGAAAGGATAAGGCA 59.217 43.478 0.00 0.00 36.99 4.75
435 436 4.228210 AGACTCCATGAAAGGATAAGGCAA 59.772 41.667 0.00 0.00 36.99 4.52
436 437 4.530875 ACTCCATGAAAGGATAAGGCAAG 58.469 43.478 0.00 0.00 36.99 4.01
437 438 3.887716 CTCCATGAAAGGATAAGGCAAGG 59.112 47.826 0.00 0.00 36.99 3.61
438 439 3.269381 TCCATGAAAGGATAAGGCAAGGT 59.731 43.478 0.00 0.00 31.23 3.50
439 440 3.382546 CCATGAAAGGATAAGGCAAGGTG 59.617 47.826 0.00 0.00 0.00 4.00
440 441 2.446435 TGAAAGGATAAGGCAAGGTGC 58.554 47.619 0.00 0.00 44.08 5.01
450 451 3.423154 CAAGGTGCCGAGCGGTTC 61.423 66.667 10.94 4.12 37.65 3.62
459 460 4.754667 GAGCGGTTCGTGGGGTCC 62.755 72.222 0.00 0.00 0.00 4.46
463 464 4.383861 GGTTCGTGGGGTCCCGTC 62.384 72.222 0.48 0.00 39.42 4.79
464 465 3.618750 GTTCGTGGGGTCCCGTCA 61.619 66.667 0.48 0.00 39.42 4.35
465 466 3.307906 TTCGTGGGGTCCCGTCAG 61.308 66.667 0.48 0.00 39.42 3.51
488 489 4.778415 CGTCCCACCACGCGAGAG 62.778 72.222 15.93 2.63 31.96 3.20
489 490 3.371063 GTCCCACCACGCGAGAGA 61.371 66.667 15.93 0.00 0.00 3.10
490 491 3.062466 TCCCACCACGCGAGAGAG 61.062 66.667 15.93 0.00 0.00 3.20
491 492 3.062466 CCCACCACGCGAGAGAGA 61.062 66.667 15.93 0.00 33.96 3.10
492 493 2.487428 CCACCACGCGAGAGAGAG 59.513 66.667 15.93 0.00 33.96 3.20
493 494 2.202544 CACCACGCGAGAGAGAGC 60.203 66.667 15.93 0.00 33.96 4.09
494 495 2.673341 ACCACGCGAGAGAGAGCA 60.673 61.111 15.93 0.00 33.96 4.26
495 496 2.202544 CCACGCGAGAGAGAGCAC 60.203 66.667 15.93 0.00 33.96 4.40
496 497 2.575525 CACGCGAGAGAGAGCACG 60.576 66.667 15.93 0.00 33.96 5.34
497 498 3.050876 ACGCGAGAGAGAGCACGT 61.051 61.111 15.93 0.00 33.96 4.49
498 499 2.575525 CGCGAGAGAGAGCACGTG 60.576 66.667 12.28 12.28 0.00 4.49
499 500 2.878520 GCGAGAGAGAGCACGTGC 60.879 66.667 32.79 32.79 42.49 5.34
509 510 4.445545 GCACGTGCGTTGCTAGCC 62.446 66.667 26.77 0.00 0.00 3.93
510 511 3.041351 CACGTGCGTTGCTAGCCA 61.041 61.111 13.29 0.00 0.00 4.75
511 512 2.047274 ACGTGCGTTGCTAGCCAT 60.047 55.556 13.29 0.00 0.00 4.40
512 513 1.081556 CACGTGCGTTGCTAGCCATA 61.082 55.000 13.29 0.00 0.00 2.74
513 514 0.806102 ACGTGCGTTGCTAGCCATAG 60.806 55.000 13.29 2.17 0.00 2.23
514 515 1.490693 CGTGCGTTGCTAGCCATAGG 61.491 60.000 13.29 4.70 0.00 2.57
515 516 0.179084 GTGCGTTGCTAGCCATAGGA 60.179 55.000 13.29 0.00 0.00 2.94
516 517 0.758734 TGCGTTGCTAGCCATAGGAT 59.241 50.000 13.29 0.00 0.00 3.24
517 518 1.151668 GCGTTGCTAGCCATAGGATG 58.848 55.000 13.29 0.00 0.00 3.51
527 528 2.486472 CCATAGGATGGCAGTGGATC 57.514 55.000 0.00 0.00 44.70 3.36
528 529 1.338484 CCATAGGATGGCAGTGGATCG 60.338 57.143 0.00 0.00 44.70 3.69
529 530 0.979665 ATAGGATGGCAGTGGATCGG 59.020 55.000 0.00 0.00 0.00 4.18
530 531 0.105709 TAGGATGGCAGTGGATCGGA 60.106 55.000 0.00 0.00 0.00 4.55
531 532 1.227674 GGATGGCAGTGGATCGGAC 60.228 63.158 0.00 0.00 0.00 4.79
532 533 1.592669 GATGGCAGTGGATCGGACG 60.593 63.158 0.00 0.00 0.00 4.79
533 534 2.978452 GATGGCAGTGGATCGGACGG 62.978 65.000 0.00 0.00 0.00 4.79
534 535 4.530857 GGCAGTGGATCGGACGGG 62.531 72.222 0.00 0.00 0.00 5.28
536 537 4.873129 CAGTGGATCGGACGGGCG 62.873 72.222 0.00 0.00 0.00 6.13
567 568 3.362581 CGAAGCTGCCGGATAGAAA 57.637 52.632 5.05 0.00 0.00 2.52
568 569 0.931005 CGAAGCTGCCGGATAGAAAC 59.069 55.000 5.05 0.00 0.00 2.78
569 570 1.739035 CGAAGCTGCCGGATAGAAACA 60.739 52.381 5.05 0.00 0.00 2.83
570 571 2.565841 GAAGCTGCCGGATAGAAACAT 58.434 47.619 5.05 0.00 0.00 2.71
571 572 2.717639 AGCTGCCGGATAGAAACATT 57.282 45.000 5.05 0.00 0.00 2.71
572 573 2.565841 AGCTGCCGGATAGAAACATTC 58.434 47.619 5.05 0.00 0.00 2.67
573 574 2.171448 AGCTGCCGGATAGAAACATTCT 59.829 45.455 5.05 0.00 43.72 2.40
574 575 2.945668 GCTGCCGGATAGAAACATTCTT 59.054 45.455 5.05 0.00 41.14 2.52
575 576 3.378427 GCTGCCGGATAGAAACATTCTTT 59.622 43.478 5.05 0.00 41.14 2.52
576 577 4.496507 GCTGCCGGATAGAAACATTCTTTC 60.497 45.833 5.05 0.50 41.14 2.62
577 578 4.843728 TGCCGGATAGAAACATTCTTTCT 58.156 39.130 5.05 1.24 41.14 2.52
578 579 5.253330 TGCCGGATAGAAACATTCTTTCTT 58.747 37.500 5.05 0.00 41.14 2.52
579 580 5.710099 TGCCGGATAGAAACATTCTTTCTTT 59.290 36.000 5.05 0.00 41.14 2.52
580 581 6.208599 TGCCGGATAGAAACATTCTTTCTTTT 59.791 34.615 5.05 0.00 41.14 2.27
581 582 7.090808 GCCGGATAGAAACATTCTTTCTTTTT 58.909 34.615 5.05 0.00 41.14 1.94
601 602 5.497635 TTTTTCATTTTCTTTGCCAAGCC 57.502 34.783 0.00 0.00 0.00 4.35
602 603 2.437200 TCATTTTCTTTGCCAAGCCG 57.563 45.000 0.00 0.00 0.00 5.52
603 604 1.000731 TCATTTTCTTTGCCAAGCCGG 59.999 47.619 0.00 0.00 38.11 6.13
626 627 2.437002 GAACGCGGGGCATTGGTA 60.437 61.111 12.47 0.00 0.00 3.25
627 628 2.034376 AACGCGGGGCATTGGTAA 59.966 55.556 12.47 0.00 0.00 2.85
628 629 1.988834 GAACGCGGGGCATTGGTAAG 61.989 60.000 12.47 0.00 0.00 2.34
629 630 2.124901 CGCGGGGCATTGGTAAGA 60.125 61.111 0.00 0.00 0.00 2.10
630 631 1.747367 CGCGGGGCATTGGTAAGAA 60.747 57.895 0.00 0.00 0.00 2.52
631 632 1.714899 CGCGGGGCATTGGTAAGAAG 61.715 60.000 0.00 0.00 0.00 2.85
632 633 2.004808 GCGGGGCATTGGTAAGAAGC 62.005 60.000 0.00 0.00 0.00 3.86
633 634 0.679640 CGGGGCATTGGTAAGAAGCA 60.680 55.000 0.00 0.00 0.00 3.91
634 635 1.780503 GGGGCATTGGTAAGAAGCAT 58.219 50.000 0.00 0.00 32.06 3.79
635 636 2.748132 CGGGGCATTGGTAAGAAGCATA 60.748 50.000 0.00 0.00 32.06 3.14
636 637 2.623416 GGGGCATTGGTAAGAAGCATAC 59.377 50.000 0.00 0.00 32.06 2.39
643 644 6.528072 GCATTGGTAAGAAGCATACTCAAAAC 59.472 38.462 0.00 0.00 32.06 2.43
654 655 4.570772 GCATACTCAAAACGCTCTAATCCA 59.429 41.667 0.00 0.00 0.00 3.41
660 661 2.510768 AACGCTCTAATCCACCGATC 57.489 50.000 0.00 0.00 0.00 3.69
661 662 0.311165 ACGCTCTAATCCACCGATCG 59.689 55.000 8.51 8.51 0.00 3.69
732 742 8.190784 AGAATTTTGTGGAAGTGTGTTTTCTAG 58.809 33.333 0.00 0.00 0.00 2.43
733 743 6.827586 TTTTGTGGAAGTGTGTTTTCTAGT 57.172 33.333 0.00 0.00 0.00 2.57
735 745 6.913873 TTGTGGAAGTGTGTTTTCTAGTAC 57.086 37.500 0.00 0.00 0.00 2.73
736 746 5.979993 TGTGGAAGTGTGTTTTCTAGTACA 58.020 37.500 0.00 0.00 0.00 2.90
737 747 6.408035 TGTGGAAGTGTGTTTTCTAGTACAA 58.592 36.000 0.00 0.00 0.00 2.41
738 748 6.879993 TGTGGAAGTGTGTTTTCTAGTACAAA 59.120 34.615 0.00 0.00 0.00 2.83
739 749 7.148373 TGTGGAAGTGTGTTTTCTAGTACAAAC 60.148 37.037 0.00 0.00 33.57 2.93
744 754 6.704937 AGTGTGTTTTCTAGTACAAACCTAGC 59.295 38.462 0.00 0.00 33.81 3.42
745 755 5.993441 TGTGTTTTCTAGTACAAACCTAGCC 59.007 40.000 0.00 0.00 33.43 3.93
746 756 5.410746 GTGTTTTCTAGTACAAACCTAGCCC 59.589 44.000 0.00 0.00 33.43 5.19
748 758 5.672421 TTTCTAGTACAAACCTAGCCCTC 57.328 43.478 0.00 0.00 33.43 4.30
750 760 4.880164 TCTAGTACAAACCTAGCCCTCAT 58.120 43.478 0.00 0.00 33.43 2.90
751 761 6.022107 TCTAGTACAAACCTAGCCCTCATA 57.978 41.667 0.00 0.00 33.43 2.15
753 763 4.359105 AGTACAAACCTAGCCCTCATACA 58.641 43.478 0.00 0.00 0.00 2.29
755 765 4.862641 ACAAACCTAGCCCTCATACAAT 57.137 40.909 0.00 0.00 0.00 2.71
756 766 5.193099 ACAAACCTAGCCCTCATACAATT 57.807 39.130 0.00 0.00 0.00 2.32
757 767 6.321821 ACAAACCTAGCCCTCATACAATTA 57.678 37.500 0.00 0.00 0.00 1.40
758 768 6.727394 ACAAACCTAGCCCTCATACAATTAA 58.273 36.000 0.00 0.00 0.00 1.40
759 769 6.602009 ACAAACCTAGCCCTCATACAATTAAC 59.398 38.462 0.00 0.00 0.00 2.01
760 770 6.576778 AACCTAGCCCTCATACAATTAACT 57.423 37.500 0.00 0.00 0.00 2.24
761 771 6.176014 ACCTAGCCCTCATACAATTAACTC 57.824 41.667 0.00 0.00 0.00 3.01
762 772 5.221461 ACCTAGCCCTCATACAATTAACTCG 60.221 44.000 0.00 0.00 0.00 4.18
763 773 3.467803 AGCCCTCATACAATTAACTCGC 58.532 45.455 0.00 0.00 0.00 5.03
764 774 3.118408 AGCCCTCATACAATTAACTCGCA 60.118 43.478 0.00 0.00 0.00 5.10
765 775 3.248602 GCCCTCATACAATTAACTCGCAG 59.751 47.826 0.00 0.00 0.00 5.18
766 776 4.442706 CCCTCATACAATTAACTCGCAGT 58.557 43.478 0.00 0.00 0.00 4.40
767 777 5.597806 CCCTCATACAATTAACTCGCAGTA 58.402 41.667 0.00 0.00 0.00 2.74
929 939 3.242867 CCCACTTGGCTGGAGATAGATA 58.757 50.000 0.00 0.00 32.30 1.98
1013 1025 5.163540 ACCTCACCATCGACTTACATACTTC 60.164 44.000 0.00 0.00 0.00 3.01
1016 1028 5.417894 TCACCATCGACTTACATACTTCTGT 59.582 40.000 0.00 0.00 0.00 3.41
1037 1053 3.449227 CCGGAGCCACACGAGCTA 61.449 66.667 0.00 0.00 41.75 3.32
1038 1054 2.103143 CGGAGCCACACGAGCTAG 59.897 66.667 0.00 0.00 41.75 3.42
1039 1055 2.202810 GGAGCCACACGAGCTAGC 60.203 66.667 6.62 6.62 41.75 3.42
1041 1072 1.807573 GAGCCACACGAGCTAGCAC 60.808 63.158 18.83 10.18 41.75 4.40
1055 1086 2.151202 CTAGCACCACCGACAAACAAT 58.849 47.619 0.00 0.00 0.00 2.71
1058 1089 1.068816 GCACCACCGACAAACAATACC 60.069 52.381 0.00 0.00 0.00 2.73
1060 1091 2.882137 CACCACCGACAAACAATACCTT 59.118 45.455 0.00 0.00 0.00 3.50
1061 1092 2.882137 ACCACCGACAAACAATACCTTG 59.118 45.455 0.00 0.00 38.39 3.61
1062 1093 2.351350 CCACCGACAAACAATACCTTGC 60.351 50.000 0.00 0.00 35.69 4.01
1063 1094 2.552315 CACCGACAAACAATACCTTGCT 59.448 45.455 0.00 0.00 35.69 3.91
1064 1095 2.552315 ACCGACAAACAATACCTTGCTG 59.448 45.455 0.00 0.00 35.69 4.41
1065 1096 2.552315 CCGACAAACAATACCTTGCTGT 59.448 45.455 0.00 0.00 35.52 4.40
1066 1097 3.004315 CCGACAAACAATACCTTGCTGTT 59.996 43.478 0.00 0.00 33.92 3.16
1067 1098 4.219033 CGACAAACAATACCTTGCTGTTC 58.781 43.478 0.00 0.00 33.92 3.18
1068 1099 4.024048 CGACAAACAATACCTTGCTGTTCT 60.024 41.667 0.00 0.00 33.92 3.01
1069 1100 5.186996 ACAAACAATACCTTGCTGTTCTG 57.813 39.130 0.00 0.00 35.69 3.02
1070 1101 4.887071 ACAAACAATACCTTGCTGTTCTGA 59.113 37.500 0.00 0.00 35.69 3.27
1071 1102 5.009010 ACAAACAATACCTTGCTGTTCTGAG 59.991 40.000 0.00 0.00 35.69 3.35
1072 1103 3.077359 ACAATACCTTGCTGTTCTGAGC 58.923 45.455 0.00 0.00 39.62 4.26
1073 1104 3.244700 ACAATACCTTGCTGTTCTGAGCT 60.245 43.478 0.00 0.00 39.90 4.09
1074 1105 2.751166 TACCTTGCTGTTCTGAGCTC 57.249 50.000 6.82 6.82 39.90 4.09
1200 1231 4.754667 GTCCCGTCCAACCGGCTC 62.755 72.222 0.00 0.00 46.71 4.70
1365 1396 4.898607 GGAACCAAGGTCAGTGCA 57.101 55.556 0.00 0.00 0.00 4.57
1366 1397 3.109847 GGAACCAAGGTCAGTGCAA 57.890 52.632 0.00 0.00 0.00 4.08
1368 1399 1.963515 GGAACCAAGGTCAGTGCAAAT 59.036 47.619 0.00 0.00 0.00 2.32
1369 1400 2.365293 GGAACCAAGGTCAGTGCAAATT 59.635 45.455 0.00 0.00 0.00 1.82
1370 1401 3.181466 GGAACCAAGGTCAGTGCAAATTT 60.181 43.478 0.00 0.00 0.00 1.82
1371 1402 3.733443 ACCAAGGTCAGTGCAAATTTC 57.267 42.857 0.00 0.00 0.00 2.17
1372 1403 3.299503 ACCAAGGTCAGTGCAAATTTCT 58.700 40.909 0.00 0.00 0.00 2.52
1375 1406 4.543692 CAAGGTCAGTGCAAATTTCTCTG 58.456 43.478 0.00 10.72 0.00 3.35
1376 1407 2.555757 AGGTCAGTGCAAATTTCTCTGC 59.444 45.455 0.00 4.52 39.09 4.26
1377 1408 2.294233 GGTCAGTGCAAATTTCTCTGCA 59.706 45.455 0.00 0.00 46.01 4.41
1388 1419 7.148035 TGCAAATTTCTCTGCAATCTAATAGCA 60.148 33.333 0.04 0.00 45.25 3.49
1389 1420 7.866393 GCAAATTTCTCTGCAATCTAATAGCAT 59.134 33.333 0.00 0.00 38.48 3.79
1390 1421 9.181805 CAAATTTCTCTGCAATCTAATAGCATG 57.818 33.333 0.00 0.00 37.68 4.06
1391 1422 8.687292 AATTTCTCTGCAATCTAATAGCATGA 57.313 30.769 0.00 0.00 37.68 3.07
1392 1423 7.725818 TTTCTCTGCAATCTAATAGCATGAG 57.274 36.000 0.00 0.00 37.68 2.90
1393 1424 6.416631 TCTCTGCAATCTAATAGCATGAGT 57.583 37.500 0.00 0.00 37.68 3.41
1394 1425 7.530426 TCTCTGCAATCTAATAGCATGAGTA 57.470 36.000 0.00 0.00 37.68 2.59
1395 1426 7.955918 TCTCTGCAATCTAATAGCATGAGTAA 58.044 34.615 0.00 0.00 37.68 2.24
1396 1427 7.869937 TCTCTGCAATCTAATAGCATGAGTAAC 59.130 37.037 0.00 0.00 37.68 2.50
1397 1428 6.931281 TCTGCAATCTAATAGCATGAGTAACC 59.069 38.462 0.00 0.00 37.68 2.85
1398 1429 6.591001 TGCAATCTAATAGCATGAGTAACCA 58.409 36.000 0.00 0.00 32.55 3.67
1400 1431 7.720957 TGCAATCTAATAGCATGAGTAACCATT 59.279 33.333 0.00 0.00 32.55 3.16
1401 1432 8.571336 GCAATCTAATAGCATGAGTAACCATTT 58.429 33.333 0.00 0.00 0.00 2.32
1413 1451 4.215109 AGTAACCATTTGTGGCTCAACTT 58.785 39.130 0.74 0.00 35.61 2.66
1428 1466 4.209911 GCTCAACTTTTGCCTGAAATGAAC 59.790 41.667 0.00 0.00 0.00 3.18
1513 1553 1.467342 GTTGATCAGGTAACCAACGGC 59.533 52.381 0.00 0.00 31.16 5.68
1514 1554 0.981183 TGATCAGGTAACCAACGGCT 59.019 50.000 0.00 0.00 37.17 5.52
1524 1564 1.530655 CCAACGGCTTTGTCCCCTT 60.531 57.895 2.89 0.00 32.71 3.95
1537 1577 5.576563 TTGTCCCCTTCAATCTTCACTTA 57.423 39.130 0.00 0.00 0.00 2.24
1585 1630 8.025243 TCTGTTAGTGAATTCGATTACCAAAC 57.975 34.615 0.04 2.65 0.00 2.93
1770 1818 3.754955 TGTTTGTATCAGTAGCTCGTCG 58.245 45.455 0.00 0.00 0.00 5.12
1868 1916 6.393897 TCCTCATGGACCTAATAATCTCCTT 58.606 40.000 0.00 0.00 37.46 3.36
2017 2068 9.742552 GTCGATTACTGATTTCTTTTTAGTCAC 57.257 33.333 0.00 0.00 0.00 3.67
2100 2151 3.274288 GAGGTGCAATCCTTTAGTGGAG 58.726 50.000 0.00 0.00 39.78 3.86
2221 2272 1.078637 GAGGCCACGGGGAGTAAAC 60.079 63.158 8.67 0.00 35.59 2.01
2247 2298 2.366435 CCCCCTTTCTCCCGCCTA 60.366 66.667 0.00 0.00 0.00 3.93
2265 2316 1.469335 TAAGCGGCTATCCCTTCCCG 61.469 60.000 1.35 0.00 43.38 5.14
2268 2319 2.131709 CGGCTATCCCTTCCCGTCA 61.132 63.158 0.00 0.00 36.18 4.35
2302 2353 1.600636 CCGCAGACACCACCAATGT 60.601 57.895 0.00 0.00 0.00 2.71
2306 2357 0.401738 CAGACACCACCAATGTCCCT 59.598 55.000 1.62 0.00 46.38 4.20
2311 2362 2.647299 ACACCACCAATGTCCCTGATTA 59.353 45.455 0.00 0.00 0.00 1.75
2312 2363 3.269381 ACACCACCAATGTCCCTGATTAT 59.731 43.478 0.00 0.00 0.00 1.28
2347 2398 2.852075 AAGACCCTTCCGCCACCA 60.852 61.111 0.00 0.00 0.00 4.17
2378 2429 0.394488 TCACTGCGAAAACAACCCCA 60.394 50.000 0.00 0.00 0.00 4.96
2430 2481 0.478507 CACCAAAACCTCCTCAGGGT 59.521 55.000 0.00 0.00 44.44 4.34
2466 2517 2.571757 CGCTGGTAGCAAGGTCGA 59.428 61.111 0.00 0.00 42.58 4.20
2475 2526 1.675641 GCAAGGTCGATGGCAAGGT 60.676 57.895 0.00 0.00 0.00 3.50
2489 2540 1.266718 GCAAGGTTGTTGCATCTTCGA 59.733 47.619 4.87 0.00 44.34 3.71
2543 2594 4.426112 GCAAGCGGGCAAGGAAGC 62.426 66.667 0.00 0.00 0.00 3.86
2551 2602 1.576421 GGCAAGGAAGCAGACAACG 59.424 57.895 0.00 0.00 35.83 4.10
2557 2608 0.320421 GGAAGCAGACAACGGCTACA 60.320 55.000 0.00 0.00 45.79 2.74
2612 2663 1.674322 GCTACGGCAAGAGGGCAAA 60.674 57.895 0.00 0.00 43.60 3.68
2617 2668 0.890996 CGGCAAGAGGGCAAAGAAGT 60.891 55.000 0.00 0.00 43.60 3.01
2622 2673 3.807209 GCAAGAGGGCAAAGAAGTAGACA 60.807 47.826 0.00 0.00 0.00 3.41
2643 2694 1.817941 AACTGTGTTGGCGCTCGTT 60.818 52.632 7.64 0.00 0.00 3.85
2664 2715 1.390463 GATGACGTGGCGAAGAAGAAC 59.610 52.381 0.00 0.00 0.00 3.01
2676 2727 4.510340 GCGAAGAAGAACAACAAGAAGGTA 59.490 41.667 0.00 0.00 0.00 3.08
2677 2728 5.179555 GCGAAGAAGAACAACAAGAAGGTAT 59.820 40.000 0.00 0.00 0.00 2.73
2701 2752 1.240256 GATATGCCTCGTCCTCGTCT 58.760 55.000 0.00 0.00 38.33 4.18
2722 2773 3.083997 GCCATGGACCCCGTCTCT 61.084 66.667 18.40 0.00 32.47 3.10
2735 2786 2.283604 TCTCTGGCCACCGCTACA 60.284 61.111 0.00 0.00 34.44 2.74
2760 2811 3.227276 CTCCTATGCGTCCGGCCT 61.227 66.667 0.00 0.00 42.61 5.19
2799 2850 2.203337 GTGGCTGCCAAGTGGTCA 60.203 61.111 25.23 0.00 34.18 4.02
2807 2858 3.193267 GCTGCCAAGTGGTCAATGAAATA 59.807 43.478 0.00 0.00 37.57 1.40
2854 2905 3.825585 TCATTTTGGCTAGTGCATTGTCA 59.174 39.130 0.00 0.00 41.91 3.58
2867 2918 2.602878 CATTGTCAGGTGATTGCTTGC 58.397 47.619 0.00 0.00 0.00 4.01
2868 2919 0.592637 TTGTCAGGTGATTGCTTGCG 59.407 50.000 0.00 0.00 0.00 4.85
2869 2920 0.250252 TGTCAGGTGATTGCTTGCGA 60.250 50.000 0.00 0.00 0.00 5.10
2870 2921 0.166814 GTCAGGTGATTGCTTGCGAC 59.833 55.000 0.00 0.00 0.00 5.19
2871 2922 0.955428 TCAGGTGATTGCTTGCGACC 60.955 55.000 0.00 0.00 0.00 4.79
2872 2923 2.034879 AGGTGATTGCTTGCGACCG 61.035 57.895 0.00 0.00 0.00 4.79
2873 2924 2.325082 GGTGATTGCTTGCGACCGT 61.325 57.895 0.00 0.00 0.00 4.83
2874 2925 1.017177 GGTGATTGCTTGCGACCGTA 61.017 55.000 0.00 0.00 0.00 4.02
2875 2926 0.370273 GTGATTGCTTGCGACCGTAG 59.630 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.978824 CTACGTCCACCCCCAGTG 59.021 66.667 0.00 0.00 46.83 3.66
17 18 3.001406 GCTACGTCCACCCCCAGT 61.001 66.667 0.00 0.00 0.00 4.00
18 19 2.119484 TTTGCTACGTCCACCCCCAG 62.119 60.000 0.00 0.00 0.00 4.45
19 20 2.148052 TTTGCTACGTCCACCCCCA 61.148 57.895 0.00 0.00 0.00 4.96
20 21 1.673337 GTTTGCTACGTCCACCCCC 60.673 63.158 0.00 0.00 0.00 5.40
21 22 0.535553 TTGTTTGCTACGTCCACCCC 60.536 55.000 0.00 0.00 0.00 4.95
22 23 0.589708 GTTGTTTGCTACGTCCACCC 59.410 55.000 0.00 0.00 0.00 4.61
23 24 1.301423 TGTTGTTTGCTACGTCCACC 58.699 50.000 0.00 0.00 0.00 4.61
24 25 3.744426 ACTATGTTGTTTGCTACGTCCAC 59.256 43.478 0.00 0.00 0.00 4.02
25 26 3.997762 ACTATGTTGTTTGCTACGTCCA 58.002 40.909 0.00 0.00 0.00 4.02
26 27 4.708601 CAACTATGTTGTTTGCTACGTCC 58.291 43.478 0.00 0.00 0.00 4.79
27 28 4.148891 GCAACTATGTTGTTTGCTACGTC 58.851 43.478 11.35 0.00 0.00 4.34
28 29 3.562141 TGCAACTATGTTGTTTGCTACGT 59.438 39.130 11.35 0.00 0.00 3.57
29 30 4.140518 TGCAACTATGTTGTTTGCTACG 57.859 40.909 11.35 0.00 0.00 3.51
30 31 3.914364 GCTGCAACTATGTTGTTTGCTAC 59.086 43.478 11.35 0.00 0.00 3.58
31 32 3.567585 TGCTGCAACTATGTTGTTTGCTA 59.432 39.130 0.00 3.83 0.00 3.49
32 33 2.361757 TGCTGCAACTATGTTGTTTGCT 59.638 40.909 0.00 0.00 0.00 3.91
33 34 2.741612 TGCTGCAACTATGTTGTTTGC 58.258 42.857 0.00 12.32 0.00 3.68
34 35 5.715429 TTTTGCTGCAACTATGTTGTTTG 57.285 34.783 15.72 4.45 0.00 2.93
35 36 5.874261 ACTTTTTGCTGCAACTATGTTGTTT 59.126 32.000 15.72 0.00 0.00 2.83
36 37 5.418676 ACTTTTTGCTGCAACTATGTTGTT 58.581 33.333 15.72 0.00 0.00 2.83
37 38 5.009854 ACTTTTTGCTGCAACTATGTTGT 57.990 34.783 15.72 4.78 0.00 3.32
38 39 5.730269 CAACTTTTTGCTGCAACTATGTTG 58.270 37.500 24.48 24.48 0.00 3.33
39 40 5.971895 CAACTTTTTGCTGCAACTATGTT 57.028 34.783 15.72 15.83 0.00 2.71
52 53 2.302230 CGGCAGCGGCAACTTTTTG 61.302 57.895 11.88 0.00 43.71 2.44
53 54 2.027460 CGGCAGCGGCAACTTTTT 59.973 55.556 11.88 0.00 43.71 1.94
54 55 4.645921 GCGGCAGCGGCAACTTTT 62.646 61.111 19.49 0.00 43.71 2.27
77 78 4.221422 TACTCCCGGCGATGCTGC 62.221 66.667 9.30 0.00 32.89 5.25
78 79 2.028190 CTACTCCCGGCGATGCTG 59.972 66.667 9.30 0.00 34.23 4.41
79 80 3.917760 GCTACTCCCGGCGATGCT 61.918 66.667 9.30 0.00 0.00 3.79
80 81 4.971125 GGCTACTCCCGGCGATGC 62.971 72.222 9.30 2.78 0.00 3.91
89 90 0.181350 CAACTCCATGGGGCTACTCC 59.819 60.000 13.00 0.00 0.00 3.85
90 91 0.464554 GCAACTCCATGGGGCTACTC 60.465 60.000 13.00 0.00 0.00 2.59
91 92 1.609783 GCAACTCCATGGGGCTACT 59.390 57.895 13.00 0.00 0.00 2.57
92 93 1.453928 GGCAACTCCATGGGGCTAC 60.454 63.158 13.00 0.00 34.01 3.58
93 94 3.006677 GGCAACTCCATGGGGCTA 58.993 61.111 13.00 0.00 34.01 3.93
105 106 2.131183 CGCTAAGCTAGATCAGGCAAC 58.869 52.381 11.48 0.00 0.00 4.17
106 107 1.539065 GCGCTAAGCTAGATCAGGCAA 60.539 52.381 0.00 0.51 44.04 4.52
107 108 0.032678 GCGCTAAGCTAGATCAGGCA 59.967 55.000 0.00 0.00 44.04 4.75
108 109 1.006314 CGCGCTAAGCTAGATCAGGC 61.006 60.000 5.56 0.00 45.59 4.85
109 110 0.387878 CCGCGCTAAGCTAGATCAGG 60.388 60.000 5.56 0.00 45.59 3.86
110 111 0.312416 ACCGCGCTAAGCTAGATCAG 59.688 55.000 5.56 0.00 45.59 2.90
111 112 0.030773 CACCGCGCTAAGCTAGATCA 59.969 55.000 5.56 0.00 45.59 2.92
112 113 0.030908 ACACCGCGCTAAGCTAGATC 59.969 55.000 5.56 0.00 45.59 2.75
113 114 0.460311 AACACCGCGCTAAGCTAGAT 59.540 50.000 5.56 0.00 45.59 1.98
114 115 0.179145 GAACACCGCGCTAAGCTAGA 60.179 55.000 5.56 0.00 45.59 2.43
115 116 1.472276 CGAACACCGCGCTAAGCTAG 61.472 60.000 5.56 0.00 45.59 3.42
116 117 1.515519 CGAACACCGCGCTAAGCTA 60.516 57.895 5.56 0.00 45.59 3.32
117 118 2.809601 CGAACACCGCGCTAAGCT 60.810 61.111 5.56 0.00 45.59 3.74
118 119 3.067846 GACGAACACCGCGCTAAGC 62.068 63.158 5.56 0.00 43.32 3.09
119 120 2.774951 CGACGAACACCGCGCTAAG 61.775 63.158 5.56 0.00 43.32 2.18
120 121 2.801996 CGACGAACACCGCGCTAA 60.802 61.111 5.56 0.00 43.32 3.09
121 122 4.764336 CCGACGAACACCGCGCTA 62.764 66.667 5.56 0.00 43.32 4.26
125 126 4.955774 ACACCCGACGAACACCGC 62.956 66.667 0.00 0.00 43.32 5.68
126 127 3.033764 CACACCCGACGAACACCG 61.034 66.667 0.00 0.00 45.44 4.94
127 128 2.663852 CCACACCCGACGAACACC 60.664 66.667 0.00 0.00 0.00 4.16
128 129 2.663852 CCCACACCCGACGAACAC 60.664 66.667 0.00 0.00 0.00 3.32
129 130 3.931247 CCCCACACCCGACGAACA 61.931 66.667 0.00 0.00 0.00 3.18
130 131 3.584868 CTCCCCACACCCGACGAAC 62.585 68.421 0.00 0.00 0.00 3.95
131 132 3.307906 CTCCCCACACCCGACGAA 61.308 66.667 0.00 0.00 0.00 3.85
132 133 4.289101 TCTCCCCACACCCGACGA 62.289 66.667 0.00 0.00 0.00 4.20
133 134 3.760035 CTCTCCCCACACCCGACG 61.760 72.222 0.00 0.00 0.00 5.12
134 135 2.283676 TCTCTCCCCACACCCGAC 60.284 66.667 0.00 0.00 0.00 4.79
135 136 2.037367 CTCTCTCCCCACACCCGA 59.963 66.667 0.00 0.00 0.00 5.14
136 137 3.077556 CCTCTCTCCCCACACCCG 61.078 72.222 0.00 0.00 0.00 5.28
137 138 2.689034 CCCTCTCTCCCCACACCC 60.689 72.222 0.00 0.00 0.00 4.61
138 139 2.689034 CCCCTCTCTCCCCACACC 60.689 72.222 0.00 0.00 0.00 4.16
139 140 2.689034 CCCCCTCTCTCCCCACAC 60.689 72.222 0.00 0.00 0.00 3.82
156 157 2.828549 CATGGTTGCGCTACCCCC 60.829 66.667 33.03 13.62 37.39 5.40
157 158 1.376609 CTTCATGGTTGCGCTACCCC 61.377 60.000 33.03 14.33 37.39 4.95
158 159 1.376609 CCTTCATGGTTGCGCTACCC 61.377 60.000 33.03 18.98 37.39 3.69
159 160 1.376609 CCCTTCATGGTTGCGCTACC 61.377 60.000 30.56 30.56 38.73 3.18
160 161 1.376609 CCCCTTCATGGTTGCGCTAC 61.377 60.000 13.81 13.81 0.00 3.58
161 162 1.077787 CCCCTTCATGGTTGCGCTA 60.078 57.895 9.73 0.00 0.00 4.26
162 163 2.361610 CCCCTTCATGGTTGCGCT 60.362 61.111 9.73 0.00 0.00 5.92
163 164 3.451894 CCCCCTTCATGGTTGCGC 61.452 66.667 0.00 0.00 0.00 6.09
164 165 2.035626 ACCCCCTTCATGGTTGCG 59.964 61.111 0.00 0.00 0.00 4.85
165 166 2.046285 CGACCCCCTTCATGGTTGC 61.046 63.158 0.00 0.00 34.20 4.17
166 167 1.378514 CCGACCCCCTTCATGGTTG 60.379 63.158 0.00 0.00 34.20 3.77
167 168 1.848886 GACCGACCCCCTTCATGGTT 61.849 60.000 0.00 0.00 34.20 3.67
168 169 2.204090 ACCGACCCCCTTCATGGT 60.204 61.111 0.00 0.00 37.64 3.55
169 170 0.689745 TAGACCGACCCCCTTCATGG 60.690 60.000 0.00 0.00 0.00 3.66
170 171 1.424638 ATAGACCGACCCCCTTCATG 58.575 55.000 0.00 0.00 0.00 3.07
171 172 2.449730 TCTATAGACCGACCCCCTTCAT 59.550 50.000 0.00 0.00 0.00 2.57
172 173 1.854939 TCTATAGACCGACCCCCTTCA 59.145 52.381 0.00 0.00 0.00 3.02
173 174 2.107901 TCTCTATAGACCGACCCCCTTC 59.892 54.545 0.00 0.00 0.00 3.46
174 175 2.141911 TCTCTATAGACCGACCCCCTT 58.858 52.381 0.00 0.00 0.00 3.95
175 176 1.424684 GTCTCTATAGACCGACCCCCT 59.575 57.143 9.87 0.00 45.50 4.79
176 177 1.908344 GTCTCTATAGACCGACCCCC 58.092 60.000 9.87 0.00 45.50 5.40
185 186 2.904697 TGTCGCCTCGTCTCTATAGA 57.095 50.000 1.69 1.69 0.00 1.98
186 187 3.498777 TCATTGTCGCCTCGTCTCTATAG 59.501 47.826 0.00 0.00 0.00 1.31
187 188 3.250280 GTCATTGTCGCCTCGTCTCTATA 59.750 47.826 0.00 0.00 0.00 1.31
188 189 2.033550 GTCATTGTCGCCTCGTCTCTAT 59.966 50.000 0.00 0.00 0.00 1.98
189 190 1.400846 GTCATTGTCGCCTCGTCTCTA 59.599 52.381 0.00 0.00 0.00 2.43
190 191 0.171455 GTCATTGTCGCCTCGTCTCT 59.829 55.000 0.00 0.00 0.00 3.10
191 192 0.171455 AGTCATTGTCGCCTCGTCTC 59.829 55.000 0.00 0.00 0.00 3.36
192 193 0.171455 GAGTCATTGTCGCCTCGTCT 59.829 55.000 0.00 0.00 0.00 4.18
193 194 1.134530 CGAGTCATTGTCGCCTCGTC 61.135 60.000 0.00 0.00 41.30 4.20
194 195 1.154016 CGAGTCATTGTCGCCTCGT 60.154 57.895 0.00 0.00 41.30 4.18
195 196 1.874019 CCGAGTCATTGTCGCCTCG 60.874 63.158 0.00 0.00 44.72 4.63
196 197 0.802607 GACCGAGTCATTGTCGCCTC 60.803 60.000 0.00 0.00 36.06 4.70
197 198 1.215647 GACCGAGTCATTGTCGCCT 59.784 57.895 0.00 0.00 36.06 5.52
198 199 2.158959 CGACCGAGTCATTGTCGCC 61.159 63.158 12.15 0.00 44.29 5.54
199 200 3.374330 CGACCGAGTCATTGTCGC 58.626 61.111 12.15 0.00 44.29 5.19
201 202 1.687494 GCTGCGACCGAGTCATTGTC 61.687 60.000 5.15 0.00 32.09 3.18
202 203 1.738099 GCTGCGACCGAGTCATTGT 60.738 57.895 5.15 0.00 32.09 2.71
203 204 2.456119 GGCTGCGACCGAGTCATTG 61.456 63.158 0.00 0.00 32.09 2.82
204 205 2.125512 GGCTGCGACCGAGTCATT 60.126 61.111 0.00 0.00 32.09 2.57
205 206 3.362399 CTGGCTGCGACCGAGTCAT 62.362 63.158 0.00 0.00 32.09 3.06
206 207 4.056125 CTGGCTGCGACCGAGTCA 62.056 66.667 0.00 0.00 32.09 3.41
207 208 3.069980 ATCTGGCTGCGACCGAGTC 62.070 63.158 0.00 0.00 0.00 3.36
208 209 3.071206 ATCTGGCTGCGACCGAGT 61.071 61.111 0.00 0.00 0.00 4.18
209 210 2.584418 CATCTGGCTGCGACCGAG 60.584 66.667 0.00 0.00 0.00 4.63
210 211 4.147449 CCATCTGGCTGCGACCGA 62.147 66.667 0.00 0.00 0.00 4.69
220 221 2.428925 GCAACCCATGGCCATCTGG 61.429 63.158 23.60 23.60 38.53 3.86
221 222 1.672854 CTGCAACCCATGGCCATCTG 61.673 60.000 17.61 12.52 0.00 2.90
222 223 1.380785 CTGCAACCCATGGCCATCT 60.381 57.895 17.61 0.00 0.00 2.90
223 224 3.085119 GCTGCAACCCATGGCCATC 62.085 63.158 17.61 3.77 0.00 3.51
224 225 3.078836 GCTGCAACCCATGGCCAT 61.079 61.111 14.09 14.09 0.00 4.40
225 226 3.908904 ATGCTGCAACCCATGGCCA 62.909 57.895 8.56 8.56 0.00 5.36
226 227 3.078836 ATGCTGCAACCCATGGCC 61.079 61.111 6.36 0.00 0.00 5.36
227 228 2.185867 CATGCTGCAACCCATGGC 59.814 61.111 6.36 0.00 36.16 4.40
228 229 1.514087 GTCATGCTGCAACCCATGG 59.486 57.895 6.36 4.14 39.36 3.66
229 230 0.968901 AGGTCATGCTGCAACCCATG 60.969 55.000 17.58 12.87 40.05 3.66
230 231 0.968901 CAGGTCATGCTGCAACCCAT 60.969 55.000 17.58 0.40 33.33 4.00
231 232 1.604308 CAGGTCATGCTGCAACCCA 60.604 57.895 17.58 0.00 33.33 4.51
232 233 3.281240 CAGGTCATGCTGCAACCC 58.719 61.111 17.58 12.39 33.33 4.11
241 242 1.063649 GCGCATCTTGCAGGTCATG 59.936 57.895 0.30 0.00 45.36 3.07
242 243 0.679002 AAGCGCATCTTGCAGGTCAT 60.679 50.000 11.47 0.00 45.36 3.06
243 244 1.302752 AAGCGCATCTTGCAGGTCA 60.303 52.632 11.47 0.00 45.36 4.02
244 245 1.136147 CAAGCGCATCTTGCAGGTC 59.864 57.895 11.47 0.00 45.36 3.85
245 246 3.271014 CAAGCGCATCTTGCAGGT 58.729 55.556 11.47 0.00 45.36 4.00
258 259 3.885521 GCTCCTGCGCCATCAAGC 61.886 66.667 4.18 3.04 0.00 4.01
259 260 2.124819 AGCTCCTGCGCCATCAAG 60.125 61.111 4.18 0.00 45.42 3.02
260 261 2.124983 GAGCTCCTGCGCCATCAA 60.125 61.111 4.18 0.00 45.42 2.57
261 262 4.519437 CGAGCTCCTGCGCCATCA 62.519 66.667 8.47 0.00 45.42 3.07
267 268 2.433145 TTCTTGCGAGCTCCTGCG 60.433 61.111 8.47 0.00 45.42 5.18
268 269 2.748843 GCTTCTTGCGAGCTCCTGC 61.749 63.158 8.47 7.44 37.18 4.85
269 270 1.360194 CTGCTTCTTGCGAGCTCCTG 61.360 60.000 8.47 0.00 46.63 3.86
270 271 1.079266 CTGCTTCTTGCGAGCTCCT 60.079 57.895 8.47 0.00 46.63 3.69
271 272 0.108615 TACTGCTTCTTGCGAGCTCC 60.109 55.000 8.47 1.40 46.63 4.70
272 273 1.714794 TTACTGCTTCTTGCGAGCTC 58.285 50.000 2.73 2.73 46.63 4.09
273 274 2.393271 ATTACTGCTTCTTGCGAGCT 57.607 45.000 0.00 0.00 46.63 4.09
274 275 2.416547 TCAATTACTGCTTCTTGCGAGC 59.583 45.455 0.00 0.00 46.63 5.03
275 276 4.668576 TTCAATTACTGCTTCTTGCGAG 57.331 40.909 0.00 0.00 46.63 5.03
276 277 5.431420 TTTTCAATTACTGCTTCTTGCGA 57.569 34.783 0.00 0.00 46.63 5.10
277 278 6.519315 CATTTTTCAATTACTGCTTCTTGCG 58.481 36.000 0.00 0.00 46.63 4.85
278 279 6.301861 GCATTTTTCAATTACTGCTTCTTGC 58.698 36.000 0.00 0.00 43.25 4.01
279 280 6.400303 CCGCATTTTTCAATTACTGCTTCTTG 60.400 38.462 0.00 0.00 0.00 3.02
280 281 5.634859 CCGCATTTTTCAATTACTGCTTCTT 59.365 36.000 0.00 0.00 0.00 2.52
281 282 5.048083 TCCGCATTTTTCAATTACTGCTTCT 60.048 36.000 0.00 0.00 0.00 2.85
282 283 5.160641 TCCGCATTTTTCAATTACTGCTTC 58.839 37.500 0.00 0.00 0.00 3.86
283 284 5.132897 TCCGCATTTTTCAATTACTGCTT 57.867 34.783 0.00 0.00 0.00 3.91
284 285 4.782019 TCCGCATTTTTCAATTACTGCT 57.218 36.364 0.00 0.00 0.00 4.24
285 286 4.259930 GCATCCGCATTTTTCAATTACTGC 60.260 41.667 0.00 0.00 38.36 4.40
286 287 5.005012 CAGCATCCGCATTTTTCAATTACTG 59.995 40.000 0.00 0.00 42.27 2.74
287 288 5.104374 CAGCATCCGCATTTTTCAATTACT 58.896 37.500 0.00 0.00 42.27 2.24
288 289 4.268405 CCAGCATCCGCATTTTTCAATTAC 59.732 41.667 0.00 0.00 42.27 1.89
289 290 4.431809 CCAGCATCCGCATTTTTCAATTA 58.568 39.130 0.00 0.00 42.27 1.40
290 291 3.264104 CCAGCATCCGCATTTTTCAATT 58.736 40.909 0.00 0.00 42.27 2.32
291 292 2.896168 CCAGCATCCGCATTTTTCAAT 58.104 42.857 0.00 0.00 42.27 2.57
292 293 1.672441 GCCAGCATCCGCATTTTTCAA 60.672 47.619 0.00 0.00 42.27 2.69
293 294 0.108709 GCCAGCATCCGCATTTTTCA 60.109 50.000 0.00 0.00 42.27 2.69
294 295 1.141591 CGCCAGCATCCGCATTTTTC 61.142 55.000 0.00 0.00 42.27 2.29
295 296 1.153784 CGCCAGCATCCGCATTTTT 60.154 52.632 0.00 0.00 42.27 1.94
296 297 2.491152 CGCCAGCATCCGCATTTT 59.509 55.556 0.00 0.00 42.27 1.82
297 298 3.520862 CCGCCAGCATCCGCATTT 61.521 61.111 0.00 0.00 42.27 2.32
321 322 3.274586 CACCTGCCATCGATGCCG 61.275 66.667 20.25 8.55 37.07 5.69
322 323 2.124570 ACACCTGCCATCGATGCC 60.125 61.111 20.25 9.97 0.00 4.40
323 324 3.104766 CACACCTGCCATCGATGC 58.895 61.111 20.25 15.19 0.00 3.91
324 325 2.816360 CGCACACCTGCCATCGATG 61.816 63.158 18.76 18.76 40.73 3.84
325 326 2.512286 CGCACACCTGCCATCGAT 60.512 61.111 0.00 0.00 40.73 3.59
326 327 4.758251 CCGCACACCTGCCATCGA 62.758 66.667 0.00 0.00 40.73 3.59
354 355 4.452733 CTCTCCCGTGTTCGCCCC 62.453 72.222 0.00 0.00 35.54 5.80
355 356 4.452733 CCTCTCCCGTGTTCGCCC 62.453 72.222 0.00 0.00 35.54 6.13
356 357 2.939261 TTCCTCTCCCGTGTTCGCC 61.939 63.158 0.00 0.00 35.54 5.54
357 358 1.737008 GTTCCTCTCCCGTGTTCGC 60.737 63.158 0.00 0.00 35.54 4.70
358 359 0.246635 ATGTTCCTCTCCCGTGTTCG 59.753 55.000 0.00 0.00 0.00 3.95
359 360 1.002087 ACATGTTCCTCTCCCGTGTTC 59.998 52.381 0.00 0.00 0.00 3.18
360 361 1.056660 ACATGTTCCTCTCCCGTGTT 58.943 50.000 0.00 0.00 0.00 3.32
361 362 0.321671 CACATGTTCCTCTCCCGTGT 59.678 55.000 0.00 0.00 0.00 4.49
362 363 1.021390 GCACATGTTCCTCTCCCGTG 61.021 60.000 0.00 0.00 0.00 4.94
363 364 1.296715 GCACATGTTCCTCTCCCGT 59.703 57.895 0.00 0.00 0.00 5.28
364 365 1.811266 CGCACATGTTCCTCTCCCG 60.811 63.158 0.00 0.00 0.00 5.14
365 366 0.741221 GACGCACATGTTCCTCTCCC 60.741 60.000 0.00 0.00 0.00 4.30
366 367 1.078759 CGACGCACATGTTCCTCTCC 61.079 60.000 0.00 0.00 0.00 3.71
367 368 1.078759 CCGACGCACATGTTCCTCTC 61.079 60.000 0.00 0.00 0.00 3.20
368 369 1.079819 CCGACGCACATGTTCCTCT 60.080 57.895 0.00 0.00 0.00 3.69
369 370 2.740714 GCCGACGCACATGTTCCTC 61.741 63.158 0.00 0.00 34.03 3.71
370 371 2.742372 GCCGACGCACATGTTCCT 60.742 61.111 0.00 0.00 34.03 3.36
371 372 4.147322 CGCCGACGCACATGTTCC 62.147 66.667 0.00 0.00 34.03 3.62
372 373 4.147322 CCGCCGACGCACATGTTC 62.147 66.667 0.00 0.00 38.22 3.18
373 374 4.980805 ACCGCCGACGCACATGTT 62.981 61.111 0.00 0.00 38.22 2.71
381 382 2.329614 ATTTTTCCCACCGCCGACG 61.330 57.895 0.00 0.00 39.67 5.12
382 383 1.211709 CATTTTTCCCACCGCCGAC 59.788 57.895 0.00 0.00 0.00 4.79
383 384 0.537600 TTCATTTTTCCCACCGCCGA 60.538 50.000 0.00 0.00 0.00 5.54
384 385 0.530288 ATTCATTTTTCCCACCGCCG 59.470 50.000 0.00 0.00 0.00 6.46
385 386 1.405391 CCATTCATTTTTCCCACCGCC 60.405 52.381 0.00 0.00 0.00 6.13
386 387 1.548269 TCCATTCATTTTTCCCACCGC 59.452 47.619 0.00 0.00 0.00 5.68
387 388 3.195396 ACATCCATTCATTTTTCCCACCG 59.805 43.478 0.00 0.00 0.00 4.94
388 389 4.824479 ACATCCATTCATTTTTCCCACC 57.176 40.909 0.00 0.00 0.00 4.61
389 390 6.603201 TCTCTACATCCATTCATTTTTCCCAC 59.397 38.462 0.00 0.00 0.00 4.61
390 391 6.603201 GTCTCTACATCCATTCATTTTTCCCA 59.397 38.462 0.00 0.00 0.00 4.37
391 392 6.830838 AGTCTCTACATCCATTCATTTTTCCC 59.169 38.462 0.00 0.00 0.00 3.97
392 393 7.012799 GGAGTCTCTACATCCATTCATTTTTCC 59.987 40.741 0.00 0.00 33.08 3.13
393 394 7.554118 TGGAGTCTCTACATCCATTCATTTTTC 59.446 37.037 0.00 0.00 38.19 2.29
394 395 7.405292 TGGAGTCTCTACATCCATTCATTTTT 58.595 34.615 0.00 0.00 38.19 1.94
395 396 6.962182 TGGAGTCTCTACATCCATTCATTTT 58.038 36.000 0.00 0.00 38.19 1.82
396 397 6.566079 TGGAGTCTCTACATCCATTCATTT 57.434 37.500 0.00 0.00 38.19 2.32
403 404 4.406972 CCTTTCATGGAGTCTCTACATCCA 59.593 45.833 0.00 0.00 46.69 3.41
404 405 4.651503 TCCTTTCATGGAGTCTCTACATCC 59.348 45.833 0.00 0.00 31.81 3.51
405 406 5.860941 TCCTTTCATGGAGTCTCTACATC 57.139 43.478 0.00 0.00 31.81 3.06
406 407 7.016072 CCTTATCCTTTCATGGAGTCTCTACAT 59.984 40.741 0.00 0.00 39.78 2.29
407 408 6.325028 CCTTATCCTTTCATGGAGTCTCTACA 59.675 42.308 0.00 0.00 39.78 2.74
408 409 6.740122 GCCTTATCCTTTCATGGAGTCTCTAC 60.740 46.154 0.00 0.00 39.78 2.59
409 410 5.305644 GCCTTATCCTTTCATGGAGTCTCTA 59.694 44.000 0.00 0.00 39.78 2.43
410 411 4.102367 GCCTTATCCTTTCATGGAGTCTCT 59.898 45.833 0.00 0.00 39.78 3.10
411 412 4.141620 TGCCTTATCCTTTCATGGAGTCTC 60.142 45.833 0.00 0.00 39.78 3.36
412 413 3.782523 TGCCTTATCCTTTCATGGAGTCT 59.217 43.478 0.00 0.00 39.78 3.24
413 414 4.156455 TGCCTTATCCTTTCATGGAGTC 57.844 45.455 0.00 0.00 39.78 3.36
414 415 4.530875 CTTGCCTTATCCTTTCATGGAGT 58.469 43.478 0.00 0.00 39.78 3.85
415 416 3.887716 CCTTGCCTTATCCTTTCATGGAG 59.112 47.826 0.00 0.00 39.78 3.86
416 417 3.269381 ACCTTGCCTTATCCTTTCATGGA 59.731 43.478 0.00 0.00 40.82 3.41
417 418 3.382546 CACCTTGCCTTATCCTTTCATGG 59.617 47.826 0.00 0.00 0.00 3.66
418 419 3.181483 GCACCTTGCCTTATCCTTTCATG 60.181 47.826 0.00 0.00 37.42 3.07
419 420 3.026694 GCACCTTGCCTTATCCTTTCAT 58.973 45.455 0.00 0.00 37.42 2.57
420 421 2.446435 GCACCTTGCCTTATCCTTTCA 58.554 47.619 0.00 0.00 37.42 2.69
433 434 3.423154 GAACCGCTCGGCACCTTG 61.423 66.667 8.41 0.00 39.32 3.61
442 443 4.754667 GGACCCCACGAACCGCTC 62.755 72.222 0.00 0.00 0.00 5.03
446 447 4.383861 GACGGGACCCCACGAACC 62.384 72.222 4.46 0.00 35.37 3.62
447 448 3.584868 CTGACGGGACCCCACGAAC 62.585 68.421 4.46 0.00 35.37 3.95
448 449 3.307906 CTGACGGGACCCCACGAA 61.308 66.667 4.46 0.00 35.37 3.85
471 472 4.778415 CTCTCGCGTGGTGGGACG 62.778 72.222 5.77 0.00 42.42 4.79
472 473 3.343788 CTCTCTCGCGTGGTGGGAC 62.344 68.421 5.77 0.00 35.42 4.46
473 474 3.062466 CTCTCTCGCGTGGTGGGA 61.062 66.667 5.77 0.00 37.99 4.37
474 475 3.057547 CTCTCTCTCGCGTGGTGGG 62.058 68.421 5.77 0.55 0.00 4.61
475 476 2.487428 CTCTCTCTCGCGTGGTGG 59.513 66.667 5.77 0.00 0.00 4.61
476 477 2.202544 GCTCTCTCTCGCGTGGTG 60.203 66.667 5.77 0.66 0.00 4.17
477 478 2.673341 TGCTCTCTCTCGCGTGGT 60.673 61.111 5.77 0.00 0.00 4.16
478 479 2.202544 GTGCTCTCTCTCGCGTGG 60.203 66.667 5.77 0.01 0.00 4.94
479 480 2.575525 CGTGCTCTCTCTCGCGTG 60.576 66.667 5.77 3.13 0.00 5.34
480 481 3.050876 ACGTGCTCTCTCTCGCGT 61.051 61.111 5.77 0.00 43.44 6.01
481 482 2.575525 CACGTGCTCTCTCTCGCG 60.576 66.667 0.82 0.00 41.41 5.87
482 483 2.878520 GCACGTGCTCTCTCTCGC 60.879 66.667 32.55 1.87 38.21 5.03
483 484 2.575525 CGCACGTGCTCTCTCTCG 60.576 66.667 35.27 15.55 39.32 4.04
484 485 1.081108 AACGCACGTGCTCTCTCTC 60.081 57.895 35.27 7.21 39.32 3.20
485 486 1.372251 CAACGCACGTGCTCTCTCT 60.372 57.895 35.27 12.27 39.32 3.10
486 487 3.004734 GCAACGCACGTGCTCTCTC 62.005 63.158 35.27 17.80 39.32 3.20
487 488 2.142357 TAGCAACGCACGTGCTCTCT 62.142 55.000 35.27 26.26 39.79 3.10
488 489 1.678269 CTAGCAACGCACGTGCTCTC 61.678 60.000 35.27 21.49 39.79 3.20
489 490 1.734477 CTAGCAACGCACGTGCTCT 60.734 57.895 35.27 26.27 39.79 4.09
490 491 2.772189 CTAGCAACGCACGTGCTC 59.228 61.111 35.27 21.50 39.79 4.26
491 492 3.414700 GCTAGCAACGCACGTGCT 61.415 61.111 35.27 20.48 42.12 4.40
492 493 4.445545 GGCTAGCAACGCACGTGC 62.446 66.667 30.42 30.42 37.78 5.34
493 494 1.081556 TATGGCTAGCAACGCACGTG 61.082 55.000 18.24 12.28 0.00 4.49
494 495 0.806102 CTATGGCTAGCAACGCACGT 60.806 55.000 18.24 1.59 0.00 4.49
495 496 1.490693 CCTATGGCTAGCAACGCACG 61.491 60.000 18.24 0.52 0.00 5.34
496 497 0.179084 TCCTATGGCTAGCAACGCAC 60.179 55.000 18.24 0.00 0.00 5.34
497 498 0.758734 ATCCTATGGCTAGCAACGCA 59.241 50.000 18.24 5.37 0.00 5.24
498 499 1.151668 CATCCTATGGCTAGCAACGC 58.848 55.000 18.24 0.00 0.00 4.84
499 500 1.800805 CCATCCTATGGCTAGCAACG 58.199 55.000 18.24 0.00 44.70 4.10
509 510 1.338484 CCGATCCACTGCCATCCTATG 60.338 57.143 0.00 0.00 0.00 2.23
510 511 0.979665 CCGATCCACTGCCATCCTAT 59.020 55.000 0.00 0.00 0.00 2.57
511 512 0.105709 TCCGATCCACTGCCATCCTA 60.106 55.000 0.00 0.00 0.00 2.94
512 513 1.383109 TCCGATCCACTGCCATCCT 60.383 57.895 0.00 0.00 0.00 3.24
513 514 1.227674 GTCCGATCCACTGCCATCC 60.228 63.158 0.00 0.00 0.00 3.51
514 515 1.592669 CGTCCGATCCACTGCCATC 60.593 63.158 0.00 0.00 0.00 3.51
515 516 2.501128 CGTCCGATCCACTGCCAT 59.499 61.111 0.00 0.00 0.00 4.40
516 517 3.770040 CCGTCCGATCCACTGCCA 61.770 66.667 0.00 0.00 0.00 4.92
517 518 4.530857 CCCGTCCGATCCACTGCC 62.531 72.222 0.00 0.00 0.00 4.85
519 520 4.873129 CGCCCGTCCGATCCACTG 62.873 72.222 0.00 0.00 0.00 3.66
546 547 4.235762 TATCCGGCAGCTTCGGCC 62.236 66.667 17.74 11.40 46.43 6.13
547 548 2.644555 TTCTATCCGGCAGCTTCGGC 62.645 60.000 17.74 3.25 46.43 5.54
549 550 0.931005 GTTTCTATCCGGCAGCTTCG 59.069 55.000 0.00 0.00 0.00 3.79
550 551 2.024176 TGTTTCTATCCGGCAGCTTC 57.976 50.000 0.00 0.00 0.00 3.86
551 552 2.717639 ATGTTTCTATCCGGCAGCTT 57.282 45.000 0.00 0.00 0.00 3.74
552 553 2.171448 AGAATGTTTCTATCCGGCAGCT 59.829 45.455 0.00 0.00 38.49 4.24
553 554 2.565841 AGAATGTTTCTATCCGGCAGC 58.434 47.619 0.00 0.00 38.49 5.25
554 555 4.878397 AGAAAGAATGTTTCTATCCGGCAG 59.122 41.667 3.39 0.00 39.61 4.85
555 556 4.843728 AGAAAGAATGTTTCTATCCGGCA 58.156 39.130 3.39 0.00 39.61 5.69
556 557 5.819825 AAGAAAGAATGTTTCTATCCGGC 57.180 39.130 5.80 0.00 39.61 6.13
579 580 4.034975 CGGCTTGGCAAAGAAAATGAAAAA 59.965 37.500 4.56 0.00 35.19 1.94
580 581 3.559242 CGGCTTGGCAAAGAAAATGAAAA 59.441 39.130 4.56 0.00 35.19 2.29
581 582 3.129871 CGGCTTGGCAAAGAAAATGAAA 58.870 40.909 4.56 0.00 35.19 2.69
582 583 2.547642 CCGGCTTGGCAAAGAAAATGAA 60.548 45.455 4.56 0.00 35.19 2.57
583 584 1.000731 CCGGCTTGGCAAAGAAAATGA 59.999 47.619 4.56 0.00 35.19 2.57
584 585 1.431496 CCGGCTTGGCAAAGAAAATG 58.569 50.000 4.56 0.00 35.19 2.32
585 586 3.912899 CCGGCTTGGCAAAGAAAAT 57.087 47.368 4.56 0.00 35.19 1.82
608 609 3.980442 TACCAATGCCCCGCGTTCC 62.980 63.158 4.92 0.00 35.42 3.62
609 610 1.988834 CTTACCAATGCCCCGCGTTC 61.989 60.000 4.92 0.00 35.42 3.95
610 611 2.034376 TTACCAATGCCCCGCGTT 59.966 55.556 4.92 0.00 38.39 4.84
611 612 2.437716 CTTACCAATGCCCCGCGT 60.438 61.111 4.92 0.00 0.00 6.01
612 613 1.714899 CTTCTTACCAATGCCCCGCG 61.715 60.000 0.00 0.00 0.00 6.46
613 614 2.004808 GCTTCTTACCAATGCCCCGC 62.005 60.000 0.00 0.00 0.00 6.13
614 615 0.679640 TGCTTCTTACCAATGCCCCG 60.680 55.000 0.00 0.00 0.00 5.73
615 616 1.780503 ATGCTTCTTACCAATGCCCC 58.219 50.000 0.00 0.00 0.00 5.80
616 617 3.555966 AGTATGCTTCTTACCAATGCCC 58.444 45.455 0.00 0.00 0.00 5.36
617 618 4.199310 TGAGTATGCTTCTTACCAATGCC 58.801 43.478 0.00 0.00 0.00 4.40
618 619 5.818136 TTGAGTATGCTTCTTACCAATGC 57.182 39.130 0.00 0.00 0.00 3.56
619 620 6.742718 CGTTTTGAGTATGCTTCTTACCAATG 59.257 38.462 0.00 0.00 0.00 2.82
620 621 6.622896 GCGTTTTGAGTATGCTTCTTACCAAT 60.623 38.462 0.00 0.00 0.00 3.16
621 622 5.334569 GCGTTTTGAGTATGCTTCTTACCAA 60.335 40.000 0.00 0.00 0.00 3.67
622 623 4.153475 GCGTTTTGAGTATGCTTCTTACCA 59.847 41.667 0.00 0.00 0.00 3.25
623 624 4.392138 AGCGTTTTGAGTATGCTTCTTACC 59.608 41.667 0.00 0.00 34.28 2.85
624 625 5.348997 AGAGCGTTTTGAGTATGCTTCTTAC 59.651 40.000 0.00 0.00 37.96 2.34
625 626 5.479306 AGAGCGTTTTGAGTATGCTTCTTA 58.521 37.500 0.00 0.00 37.96 2.10
626 627 4.319177 AGAGCGTTTTGAGTATGCTTCTT 58.681 39.130 0.00 0.00 37.96 2.52
627 628 3.931578 AGAGCGTTTTGAGTATGCTTCT 58.068 40.909 0.00 0.00 37.96 2.85
628 629 5.779806 TTAGAGCGTTTTGAGTATGCTTC 57.220 39.130 0.00 0.00 37.96 3.86
629 630 5.294552 GGATTAGAGCGTTTTGAGTATGCTT 59.705 40.000 0.00 0.00 37.96 3.91
630 631 4.811557 GGATTAGAGCGTTTTGAGTATGCT 59.188 41.667 0.00 0.00 40.43 3.79
631 632 4.570772 TGGATTAGAGCGTTTTGAGTATGC 59.429 41.667 0.00 0.00 0.00 3.14
632 633 5.006746 GGTGGATTAGAGCGTTTTGAGTATG 59.993 44.000 0.00 0.00 0.00 2.39
633 634 5.116882 GGTGGATTAGAGCGTTTTGAGTAT 58.883 41.667 0.00 0.00 0.00 2.12
634 635 4.501071 GGTGGATTAGAGCGTTTTGAGTA 58.499 43.478 0.00 0.00 0.00 2.59
635 636 3.335579 GGTGGATTAGAGCGTTTTGAGT 58.664 45.455 0.00 0.00 0.00 3.41
636 637 2.348666 CGGTGGATTAGAGCGTTTTGAG 59.651 50.000 0.00 0.00 0.00 3.02
643 644 0.387367 CCGATCGGTGGATTAGAGCG 60.387 60.000 26.35 0.00 42.48 5.03
664 665 9.361712 GTCTACGTTAATTTTTGTGTGTAAGAC 57.638 33.333 0.00 0.00 0.00 3.01
665 666 8.268052 CGTCTACGTTAATTTTTGTGTGTAAGA 58.732 33.333 0.00 0.00 34.11 2.10
666 667 8.400620 CGTCTACGTTAATTTTTGTGTGTAAG 57.599 34.615 0.00 0.00 34.11 2.34
693 694 6.152661 TCCACAAAATTCTGTCAAAAGACACT 59.847 34.615 0.00 0.00 0.00 3.55
696 697 7.009540 CACTTCCACAAAATTCTGTCAAAAGAC 59.990 37.037 5.06 0.00 0.00 3.01
704 705 5.659440 AACACACTTCCACAAAATTCTGT 57.341 34.783 0.00 0.00 0.00 3.41
707 708 7.973944 ACTAGAAAACACACTTCCACAAAATTC 59.026 33.333 0.00 0.00 0.00 2.17
708 709 7.836842 ACTAGAAAACACACTTCCACAAAATT 58.163 30.769 0.00 0.00 0.00 1.82
709 710 7.404671 ACTAGAAAACACACTTCCACAAAAT 57.595 32.000 0.00 0.00 0.00 1.82
716 726 6.541278 AGGTTTGTACTAGAAAACACACTTCC 59.459 38.462 16.54 7.83 37.89 3.46
717 727 7.549615 AGGTTTGTACTAGAAAACACACTTC 57.450 36.000 16.54 4.00 37.89 3.01
732 742 4.748277 TGTATGAGGGCTAGGTTTGTAC 57.252 45.455 0.00 0.00 0.00 2.90
733 743 5.968676 ATTGTATGAGGGCTAGGTTTGTA 57.031 39.130 0.00 0.00 0.00 2.41
735 745 6.828785 AGTTAATTGTATGAGGGCTAGGTTTG 59.171 38.462 0.00 0.00 0.00 2.93
736 746 6.970191 AGTTAATTGTATGAGGGCTAGGTTT 58.030 36.000 0.00 0.00 0.00 3.27
737 747 6.576778 AGTTAATTGTATGAGGGCTAGGTT 57.423 37.500 0.00 0.00 0.00 3.50
738 748 5.221461 CGAGTTAATTGTATGAGGGCTAGGT 60.221 44.000 0.00 0.00 0.00 3.08
739 749 5.230942 CGAGTTAATTGTATGAGGGCTAGG 58.769 45.833 0.00 0.00 0.00 3.02
744 754 4.442706 ACTGCGAGTTAATTGTATGAGGG 58.557 43.478 0.00 0.00 0.00 4.30
745 755 6.018994 GGTTACTGCGAGTTAATTGTATGAGG 60.019 42.308 0.00 0.00 0.00 3.86
746 756 6.533723 TGGTTACTGCGAGTTAATTGTATGAG 59.466 38.462 0.00 0.00 0.00 2.90
748 758 6.656314 TGGTTACTGCGAGTTAATTGTATG 57.344 37.500 0.00 0.00 0.00 2.39
750 760 5.118971 CGTTGGTTACTGCGAGTTAATTGTA 59.881 40.000 0.00 0.00 0.00 2.41
751 761 4.084223 CGTTGGTTACTGCGAGTTAATTGT 60.084 41.667 0.00 0.00 0.00 2.71
753 763 4.309099 TCGTTGGTTACTGCGAGTTAATT 58.691 39.130 0.00 0.00 0.00 1.40
755 765 3.367992 TCGTTGGTTACTGCGAGTTAA 57.632 42.857 0.00 0.00 0.00 2.01
756 766 3.581024 ATCGTTGGTTACTGCGAGTTA 57.419 42.857 0.00 0.00 36.79 2.24
757 767 2.450609 ATCGTTGGTTACTGCGAGTT 57.549 45.000 0.00 0.00 36.79 3.01
758 768 2.734492 GCTATCGTTGGTTACTGCGAGT 60.734 50.000 0.00 0.00 36.79 4.18
759 769 1.852895 GCTATCGTTGGTTACTGCGAG 59.147 52.381 0.00 0.00 36.79 5.03
760 770 1.470285 GGCTATCGTTGGTTACTGCGA 60.470 52.381 0.00 0.00 37.76 5.10
761 771 0.928229 GGCTATCGTTGGTTACTGCG 59.072 55.000 0.00 0.00 0.00 5.18
762 772 0.928229 CGGCTATCGTTGGTTACTGC 59.072 55.000 0.00 0.00 0.00 4.40
763 773 2.572191 TCGGCTATCGTTGGTTACTG 57.428 50.000 0.00 0.00 40.32 2.74
764 774 3.598019 TTTCGGCTATCGTTGGTTACT 57.402 42.857 0.00 0.00 40.32 2.24
765 775 5.971895 TTATTTCGGCTATCGTTGGTTAC 57.028 39.130 0.00 0.00 40.32 2.50
766 776 5.294060 GGTTTATTTCGGCTATCGTTGGTTA 59.706 40.000 0.00 0.00 40.32 2.85
767 777 4.095334 GGTTTATTTCGGCTATCGTTGGTT 59.905 41.667 0.00 0.00 40.32 3.67
929 939 1.867919 CGAGCGGAGATAGGCGGATT 61.868 60.000 0.00 0.00 0.00 3.01
957 969 4.662961 GGTGCAAACGGCCTTGGC 62.663 66.667 0.00 2.49 43.89 4.52
1034 1050 0.882927 TGTTTGTCGGTGGTGCTAGC 60.883 55.000 8.10 8.10 0.00 3.42
1036 1052 2.264005 ATTGTTTGTCGGTGGTGCTA 57.736 45.000 0.00 0.00 0.00 3.49
1037 1053 1.877443 GTATTGTTTGTCGGTGGTGCT 59.123 47.619 0.00 0.00 0.00 4.40
1038 1054 1.068816 GGTATTGTTTGTCGGTGGTGC 60.069 52.381 0.00 0.00 0.00 5.01
1039 1055 2.500229 AGGTATTGTTTGTCGGTGGTG 58.500 47.619 0.00 0.00 0.00 4.17
1041 1072 2.351350 GCAAGGTATTGTTTGTCGGTGG 60.351 50.000 0.00 0.00 38.76 4.61
1055 1086 1.067565 CGAGCTCAGAACAGCAAGGTA 60.068 52.381 15.40 0.00 42.40 3.08
1058 1089 1.633852 GGCGAGCTCAGAACAGCAAG 61.634 60.000 15.40 0.00 42.40 4.01
1060 1091 2.047844 GGCGAGCTCAGAACAGCA 60.048 61.111 15.40 0.00 42.40 4.41
1061 1092 3.184683 CGGCGAGCTCAGAACAGC 61.185 66.667 15.40 7.52 39.99 4.40
1062 1093 1.803519 GACGGCGAGCTCAGAACAG 60.804 63.158 16.62 3.24 0.00 3.16
1063 1094 2.258591 GACGGCGAGCTCAGAACA 59.741 61.111 16.62 0.00 0.00 3.18
1064 1095 2.507324 GGACGGCGAGCTCAGAAC 60.507 66.667 16.62 0.00 0.00 3.01
1065 1096 3.760035 GGGACGGCGAGCTCAGAA 61.760 66.667 16.62 0.00 0.00 3.02
1363 1394 7.198390 TGCTATTAGATTGCAGAGAAATTTGC 58.802 34.615 0.00 0.00 36.15 3.68
1364 1395 9.181805 CATGCTATTAGATTGCAGAGAAATTTG 57.818 33.333 0.00 0.00 43.68 2.32
1365 1396 9.128404 TCATGCTATTAGATTGCAGAGAAATTT 57.872 29.630 0.00 0.00 43.68 1.82
1366 1397 8.687292 TCATGCTATTAGATTGCAGAGAAATT 57.313 30.769 3.72 0.00 43.68 1.82
1368 1399 7.278135 ACTCATGCTATTAGATTGCAGAGAAA 58.722 34.615 19.27 0.00 43.68 2.52
1369 1400 6.824553 ACTCATGCTATTAGATTGCAGAGAA 58.175 36.000 19.27 0.00 43.68 2.87
1370 1401 6.416631 ACTCATGCTATTAGATTGCAGAGA 57.583 37.500 19.27 12.30 43.68 3.10
1371 1402 7.117523 GGTTACTCATGCTATTAGATTGCAGAG 59.882 40.741 14.94 14.94 43.68 3.35
1372 1403 6.931281 GGTTACTCATGCTATTAGATTGCAGA 59.069 38.462 3.72 1.69 43.68 4.26
1375 1406 7.678947 ATGGTTACTCATGCTATTAGATTGC 57.321 36.000 0.00 0.00 0.00 3.56
1376 1407 9.888878 CAAATGGTTACTCATGCTATTAGATTG 57.111 33.333 0.00 0.00 0.00 2.67
1377 1408 9.632638 ACAAATGGTTACTCATGCTATTAGATT 57.367 29.630 0.00 0.00 0.00 2.40
1378 1409 9.060347 CACAAATGGTTACTCATGCTATTAGAT 57.940 33.333 0.00 0.00 0.00 1.98
1380 1411 7.642669 CCACAAATGGTTACTCATGCTATTAG 58.357 38.462 0.00 0.00 41.64 1.73
1381 1412 7.566760 CCACAAATGGTTACTCATGCTATTA 57.433 36.000 0.00 0.00 41.64 0.98
1382 1413 6.455360 CCACAAATGGTTACTCATGCTATT 57.545 37.500 0.00 0.00 41.64 1.73
1397 1428 3.865224 GCAAAAGTTGAGCCACAAATG 57.135 42.857 0.00 0.00 40.36 2.32
1413 1451 4.219070 CCTGATCAGTTCATTTCAGGCAAA 59.781 41.667 21.11 0.00 46.25 3.68
1428 1466 4.405036 TCCTCAGAATCTTCACCTGATCAG 59.595 45.833 16.24 16.24 36.48 2.90
1513 1553 4.401925 AGTGAAGATTGAAGGGGACAAAG 58.598 43.478 0.00 0.00 0.00 2.77
1514 1554 4.453480 AGTGAAGATTGAAGGGGACAAA 57.547 40.909 0.00 0.00 0.00 2.83
1524 1564 7.585286 GCAATTTGCAATAAGTGAAGATTGA 57.415 32.000 16.35 0.00 44.26 2.57
1585 1630 0.099259 ACACGCGCCATTCATCATTG 59.901 50.000 5.73 0.00 0.00 2.82
1734 1782 3.167485 ACAAACATTGGATGGAGCACAT 58.833 40.909 0.00 0.00 44.18 3.21
1770 1818 3.307242 GGCTAACATTCACATCGTCACTC 59.693 47.826 0.00 0.00 0.00 3.51
2017 2068 7.575365 TCGATTTGATCAATAATGTCCAATCG 58.425 34.615 19.76 19.76 39.72 3.34
2100 2151 2.038033 TGTGGTTAGCCGCCTATTATCC 59.962 50.000 6.71 0.00 44.42 2.59
2212 2263 3.830755 GGGGGAAAGAAAAGTTTACTCCC 59.169 47.826 12.61 12.61 35.03 4.30
2221 2272 3.165875 GGGAGAAAGGGGGAAAGAAAAG 58.834 50.000 0.00 0.00 0.00 2.27
2265 2316 1.505353 CGAGTAGGGGTGACGTGAC 59.495 63.158 0.00 0.00 0.00 3.67
2268 2319 3.066814 GGCGAGTAGGGGTGACGT 61.067 66.667 0.00 0.00 0.00 4.34
2306 2357 3.848377 CCTCTCCATCCCATCCATAATCA 59.152 47.826 0.00 0.00 0.00 2.57
2311 2362 0.402419 TGCCTCTCCATCCCATCCAT 60.402 55.000 0.00 0.00 0.00 3.41
2312 2363 0.624206 TTGCCTCTCCATCCCATCCA 60.624 55.000 0.00 0.00 0.00 3.41
2347 2398 4.988598 CAGTGAAGCGCCGGTGGT 62.989 66.667 15.27 15.27 0.00 4.16
2366 2417 2.338620 GGCGCTGGGGTTGTTTTC 59.661 61.111 7.64 0.00 0.00 2.29
2367 2418 3.601685 CGGCGCTGGGGTTGTTTT 61.602 61.111 8.83 0.00 0.00 2.43
2430 2481 1.071814 GTGGTTGCCGGTAAGGTGA 59.928 57.895 4.75 0.00 43.70 4.02
2452 2503 1.220749 GCCATCGACCTTGCTACCA 59.779 57.895 0.00 0.00 0.00 3.25
2466 2517 1.636148 AGATGCAACAACCTTGCCAT 58.364 45.000 0.00 0.00 44.32 4.40
2475 2526 0.781787 CGTCGTCGAAGATGCAACAA 59.218 50.000 7.64 0.00 44.51 2.83
2508 2559 1.750930 CCGATGGCTGGAGCAGTAT 59.249 57.895 0.20 0.00 44.36 2.12
2543 2594 1.799181 CGGAGATGTAGCCGTTGTCTG 60.799 57.143 0.00 0.00 42.49 3.51
2551 2602 1.065928 CGTCACCGGAGATGTAGCC 59.934 63.158 9.46 0.00 0.00 3.93
2596 2647 0.398696 TTCTTTGCCCTCTTGCCGTA 59.601 50.000 0.00 0.00 0.00 4.02
2597 2648 0.890996 CTTCTTTGCCCTCTTGCCGT 60.891 55.000 0.00 0.00 0.00 5.68
2643 2694 0.601057 TCTTCTTCGCCACGTCATCA 59.399 50.000 0.00 0.00 0.00 3.07
2664 2715 6.073548 GGCATATCGAAGATACCTTCTTGTTG 60.074 42.308 0.00 0.00 44.88 3.33
2676 2727 2.490115 GAGGACGAGGCATATCGAAGAT 59.510 50.000 11.51 0.00 45.56 2.40
2677 2728 1.880675 GAGGACGAGGCATATCGAAGA 59.119 52.381 11.51 0.00 45.56 2.87
2683 2734 0.955178 CAGACGAGGACGAGGCATAT 59.045 55.000 0.00 0.00 42.66 1.78
2684 2735 1.101635 CCAGACGAGGACGAGGCATA 61.102 60.000 0.00 0.00 42.66 3.14
2685 2736 2.418910 CCAGACGAGGACGAGGCAT 61.419 63.158 0.00 0.00 42.66 4.40
2735 2786 1.611519 GACGCATAGGAGGAGTAGCT 58.388 55.000 0.00 0.00 0.00 3.32
2765 2816 2.179018 CAATCCTTGTTGCCGGCG 59.821 61.111 23.90 6.63 0.00 6.46
2826 2877 5.528043 TGCACTAGCCAAAATGAAAAGAA 57.472 34.783 0.00 0.00 41.13 2.52
2838 2889 0.692476 ACCTGACAATGCACTAGCCA 59.308 50.000 0.00 0.00 41.13 4.75
2854 2905 2.034879 CGGTCGCAAGCAATCACCT 61.035 57.895 0.00 0.00 37.18 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.