Multiple sequence alignment - TraesCS5B01G495700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G495700 chr5B 100.000 6356 0 0 1 6356 662982316 662988671 0.000000e+00 11738.0
1 TraesCS5B01G495700 chr5B 88.664 1385 102 20 936 2279 669216815 669215445 0.000000e+00 1637.0
2 TraesCS5B01G495700 chr5B 83.134 1589 185 39 2487 4041 669215061 669213522 0.000000e+00 1373.0
3 TraesCS5B01G495700 chr5B 88.128 438 43 6 180 617 669217640 669217212 4.390000e-141 512.0
4 TraesCS5B01G495700 chr5B 93.056 72 4 1 6281 6352 45030114 45030044 3.130000e-18 104.0
5 TraesCS5B01G495700 chr5B 100.000 31 0 0 6190 6220 639967866 639967836 2.480000e-04 58.4
6 TraesCS5B01G495700 chr5A 93.308 4662 197 48 801 5413 654093894 654098489 0.000000e+00 6774.0
7 TraesCS5B01G495700 chr5A 85.427 4076 387 104 936 4865 657768894 657764880 0.000000e+00 4045.0
8 TraesCS5B01G495700 chr5A 91.592 666 46 8 68 728 654093120 654093780 0.000000e+00 911.0
9 TraesCS5B01G495700 chr5A 87.677 495 47 5 4892 5386 657764031 657763551 1.200000e-156 564.0
10 TraesCS5B01G495700 chr5A 90.503 358 20 7 5416 5762 654098522 654098876 1.610000e-125 460.0
11 TraesCS5B01G495700 chr5A 82.840 169 19 8 6114 6277 657763041 657762878 6.640000e-30 143.0
12 TraesCS5B01G495700 chr5A 94.737 76 4 0 6281 6356 567551472 567551547 1.120000e-22 119.0
13 TraesCS5B01G495700 chr5A 92.105 76 6 0 6281 6356 1291428 1291353 2.420000e-19 108.0
14 TraesCS5B01G495700 chr5A 90.411 73 6 1 6281 6353 666161492 666161563 1.890000e-15 95.3
15 TraesCS5B01G495700 chr5A 87.097 62 7 1 5748 5809 2396864 2396924 1.140000e-07 69.4
16 TraesCS5B01G495700 chr5D 93.117 2339 72 17 2295 4585 526915163 526917460 0.000000e+00 3345.0
17 TraesCS5B01G495700 chr5D 91.741 1465 70 17 6 1430 526912605 526914058 0.000000e+00 1988.0
18 TraesCS5B01G495700 chr5D 97.110 969 25 2 1298 2266 526914197 526915162 0.000000e+00 1631.0
19 TraesCS5B01G495700 chr5D 90.880 1239 77 14 936 2142 529853022 529851788 0.000000e+00 1629.0
20 TraesCS5B01G495700 chr5D 82.667 1650 194 44 2487 4081 529851139 529849527 0.000000e+00 1378.0
21 TraesCS5B01G495700 chr5D 93.108 769 37 6 4658 5416 526917455 526918217 0.000000e+00 1112.0
22 TraesCS5B01G495700 chr5D 87.598 508 55 6 4882 5386 529847727 529847225 3.300000e-162 582.0
23 TraesCS5B01G495700 chr5D 87.654 486 48 6 4085 4561 529849436 529848954 7.200000e-154 555.0
24 TraesCS5B01G495700 chr5D 85.827 127 15 1 6151 6277 526918721 526918844 1.440000e-26 132.0
25 TraesCS5B01G495700 chr5D 91.781 73 5 1 6281 6353 58233323 58233394 4.050000e-17 100.0
26 TraesCS5B01G495700 chr5D 83.036 112 12 4 6169 6277 529846642 529846535 1.890000e-15 95.3
27 TraesCS5B01G495700 chr5D 100.000 31 0 0 6190 6220 509432265 509432235 2.480000e-04 58.4
28 TraesCS5B01G495700 chr2D 94.444 72 4 0 6282 6353 83851714 83851785 1.870000e-20 111.0
29 TraesCS5B01G495700 chr1B 93.056 72 5 0 6281 6352 429217071 429217142 8.720000e-19 106.0
30 TraesCS5B01G495700 chr2A 91.781 73 6 0 6281 6353 17611460 17611532 1.130000e-17 102.0
31 TraesCS5B01G495700 chr6D 89.474 76 8 0 6281 6356 269772469 269772544 5.250000e-16 97.1
32 TraesCS5B01G495700 chr3A 86.585 82 8 3 5728 5809 667292703 667292625 3.160000e-13 87.9
33 TraesCS5B01G495700 chr4D 76.271 177 26 9 5850 6011 433112592 433112417 5.280000e-11 80.5
34 TraesCS5B01G495700 chr3D 97.059 34 0 1 5750 5783 579597061 579597029 8.900000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G495700 chr5B 662982316 662988671 6355 False 11738.00 11738 100.000000 1 6356 1 chr5B.!!$F1 6355
1 TraesCS5B01G495700 chr5B 669213522 669217640 4118 True 1174.00 1637 86.642000 180 4041 3 chr5B.!!$R3 3861
2 TraesCS5B01G495700 chr5A 654093120 654098876 5756 False 2715.00 6774 91.801000 68 5762 3 chr5A.!!$F4 5694
3 TraesCS5B01G495700 chr5A 657762878 657768894 6016 True 1584.00 4045 85.314667 936 6277 3 chr5A.!!$R2 5341
4 TraesCS5B01G495700 chr5D 526912605 526918844 6239 False 1641.60 3345 92.180600 6 6277 5 chr5D.!!$F2 6271
5 TraesCS5B01G495700 chr5D 529846535 529853022 6487 True 847.86 1629 86.367000 936 6277 5 chr5D.!!$R2 5341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 864 0.107703 TTTGGCAGGTATGAGAGGCG 60.108 55.000 0.0 0.0 0.00 5.52 F
981 1118 0.328258 CAGACCAAACCCCTACCCAG 59.672 60.000 0.0 0.0 0.00 4.45 F
982 1119 1.001269 GACCAAACCCCTACCCAGC 60.001 63.158 0.0 0.0 0.00 4.85 F
1786 2233 1.280710 AGGATGCATTTACCACCGACA 59.719 47.619 0.0 0.0 0.00 4.35 F
2986 3912 0.326264 CCTTCACCCACTCTTCCTGG 59.674 60.000 0.0 0.0 0.00 4.45 F
3652 4614 0.112995 AAACCATCCTGAAGCCTGCA 59.887 50.000 0.0 0.0 0.00 4.41 F
5101 7160 0.394938 TTTGCTCTGTTCCCGTAGCA 59.605 50.000 0.0 0.0 42.91 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 2233 0.608640 ACCGCCTCGAACTTCTGAAT 59.391 50.000 0.00 0.0 0.00 2.57 R
2465 3326 0.871722 TGTAAACTGCATGACCGCAC 59.128 50.000 0.00 0.0 36.86 5.34 R
2728 3651 5.389935 CCAGATCTTAAGAACAAACGACTGC 60.390 44.000 9.71 0.0 0.00 4.40 R
3048 3977 2.322161 CTTGCTGGAAATGCTTTCACG 58.678 47.619 9.75 0.0 41.43 4.35 R
4674 5887 3.324117 CAAGATATGGCATCTGACTCCG 58.676 50.000 1.65 0.0 0.00 4.63 R
5279 7338 0.526524 CTTCATCTCGGCAGTCGACC 60.527 60.000 13.01 0.0 43.74 4.79 R
6001 8392 0.033504 TTTCGTTTCTGAGAGCGGCT 59.966 50.000 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 5.069648 ACAGACAAGATCAGACTTGAACAGA 59.930 40.000 14.00 0.00 46.85 3.41
148 152 4.680440 GCAAATCAACCCGCCAATAATTCT 60.680 41.667 0.00 0.00 0.00 2.40
156 167 4.069304 CCCGCCAATAATTCTTCGGATAA 58.931 43.478 5.57 0.00 39.23 1.75
419 430 3.997064 CTCCAGCTCGCGGTCCTTG 62.997 68.421 6.13 0.00 0.00 3.61
422 433 3.303135 AGCTCGCGGTCCTTGTCA 61.303 61.111 6.13 0.00 0.00 3.58
479 490 3.978460 GAAGGCCTCGAGGATCTTC 57.022 57.895 32.71 32.71 38.66 2.87
570 581 2.004017 CAGCCGCCGATTGTTTTACTA 58.996 47.619 0.00 0.00 0.00 1.82
571 582 2.004733 AGCCGCCGATTGTTTTACTAC 58.995 47.619 0.00 0.00 0.00 2.73
588 599 0.170339 TACTGCATGGTCGTCGTCTG 59.830 55.000 0.00 0.00 0.00 3.51
589 600 2.432456 TGCATGGTCGTCGTCTGC 60.432 61.111 0.00 0.00 0.00 4.26
590 601 3.545481 GCATGGTCGTCGTCTGCG 61.545 66.667 0.00 0.00 39.92 5.18
757 864 0.107703 TTTGGCAGGTATGAGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
785 892 4.112634 CGTATATATGGGAAGCGATGGTG 58.887 47.826 0.00 0.00 0.00 4.17
815 935 0.899720 TAGAACAGTAACTGGCCGGG 59.100 55.000 18.00 5.11 35.51 5.73
932 1064 2.887783 TGCATTTTTCTCCGCTTGGTAA 59.112 40.909 0.00 0.00 0.00 2.85
934 1066 3.488489 CATTTTTCTCCGCTTGGTAACG 58.512 45.455 0.00 0.00 42.51 3.18
980 1117 1.137594 CCAGACCAAACCCCTACCCA 61.138 60.000 0.00 0.00 0.00 4.51
981 1118 0.328258 CAGACCAAACCCCTACCCAG 59.672 60.000 0.00 0.00 0.00 4.45
982 1119 1.001269 GACCAAACCCCTACCCAGC 60.001 63.158 0.00 0.00 0.00 4.85
983 1120 2.359011 CCAAACCCCTACCCAGCC 59.641 66.667 0.00 0.00 0.00 4.85
984 1121 2.359011 CAAACCCCTACCCAGCCC 59.641 66.667 0.00 0.00 0.00 5.19
985 1122 2.944954 AAACCCCTACCCAGCCCC 60.945 66.667 0.00 0.00 0.00 5.80
1779 2226 4.786425 AGGAGAAGAAGGATGCATTTACC 58.214 43.478 0.00 0.00 0.00 2.85
1780 2227 4.228210 AGGAGAAGAAGGATGCATTTACCA 59.772 41.667 0.00 0.00 0.00 3.25
1786 2233 1.280710 AGGATGCATTTACCACCGACA 59.719 47.619 0.00 0.00 0.00 4.35
1810 2257 3.530910 AAGTTCGAGGCGGTGGTGG 62.531 63.158 0.00 0.00 0.00 4.61
2203 2652 6.423905 TCTCTCCATGTTTTTACTCTTTCACG 59.576 38.462 0.00 0.00 0.00 4.35
2352 3194 9.613428 CTCCATAGTTCAATATGTTTGGTCTTA 57.387 33.333 0.00 0.00 32.27 2.10
2465 3326 7.601856 TGTATGATCTTTTGCTTTGTTTAGGG 58.398 34.615 0.00 0.00 0.00 3.53
2546 3445 6.533723 CCTTTTACCTTTCTTGTTGTTTGTCC 59.466 38.462 0.00 0.00 0.00 4.02
2579 3478 8.474831 ACTTGTTTTACTGCTTGTTTCCTTAAT 58.525 29.630 0.00 0.00 0.00 1.40
2700 3622 6.877322 TGTCAGGTTAGATTAAGTAAACTGCC 59.123 38.462 15.86 9.00 42.59 4.85
2986 3912 0.326264 CCTTCACCCACTCTTCCTGG 59.674 60.000 0.00 0.00 0.00 4.45
3017 3946 9.788960 AATTTCTTTAGTTCTTCTGTTGAACAC 57.211 29.630 0.00 0.00 44.30 3.32
3048 3977 0.863119 GCAAATCGGCGACTTCATGC 60.863 55.000 13.76 14.59 0.00 4.06
3181 4124 4.223923 AGTGCTCCTCTATTGCTAGTTTGT 59.776 41.667 0.00 0.00 0.00 2.83
3400 4345 5.700402 AAGTATTGTCCCTCAGTGCTTAT 57.300 39.130 0.00 0.00 37.07 1.73
3652 4614 0.112995 AAACCATCCTGAAGCCTGCA 59.887 50.000 0.00 0.00 0.00 4.41
3655 4617 1.030488 CCATCCTGAAGCCTGCACTG 61.030 60.000 0.00 0.00 0.00 3.66
3686 4648 4.933330 TGCTAATGAGACTAAACGGCTAG 58.067 43.478 0.00 0.00 0.00 3.42
3854 4819 7.958674 TCACAGCATGAAAAAGTAAAACAAAC 58.041 30.769 0.00 0.00 39.69 2.93
4057 5029 9.472361 TTTAGTACTCATCACAGTGTAGAAAAC 57.528 33.333 0.00 1.94 0.00 2.43
4242 5303 1.199789 CTCTAGCGTGCATTTTTGGCA 59.800 47.619 0.00 0.00 39.32 4.92
4254 5315 4.496175 GCATTTTTGGCAGTTGGTTTTCAG 60.496 41.667 0.00 0.00 0.00 3.02
4351 5412 4.524316 TTCACTCTGCCAATCCAAATTG 57.476 40.909 0.00 0.00 41.69 2.32
4674 5887 5.796813 AGCGCTTAAGATGTTTTTATCGAC 58.203 37.500 2.64 0.00 32.33 4.20
4741 5961 5.733620 AATTTTAGGGGCATGCAGATATG 57.266 39.130 21.36 0.00 0.00 1.78
4760 5982 8.121086 CAGATATGACTTGCTAGAAACAACATG 58.879 37.037 1.04 0.00 0.00 3.21
4769 5993 7.750229 TGCTAGAAACAACATGAAGAGAATT 57.250 32.000 0.00 0.00 0.00 2.17
4795 6019 9.605955 TTGTTGTCTAACATGTTCGAATTATTG 57.394 29.630 15.85 0.00 45.56 1.90
5002 7060 5.258622 CGATGCTAGAAAATTGAAAGACGG 58.741 41.667 0.00 0.00 0.00 4.79
5048 7106 1.738099 CACCGTTGAGAAGGAGGCG 60.738 63.158 0.00 0.00 0.00 5.52
5099 7158 5.873179 TTAAATTTGCTCTGTTCCCGTAG 57.127 39.130 0.00 0.00 0.00 3.51
5100 7159 1.739067 ATTTGCTCTGTTCCCGTAGC 58.261 50.000 0.00 0.00 35.51 3.58
5101 7160 0.394938 TTTGCTCTGTTCCCGTAGCA 59.605 50.000 0.00 0.00 42.91 3.49
5102 7161 0.613260 TTGCTCTGTTCCCGTAGCAT 59.387 50.000 0.00 0.00 43.94 3.79
5134 7193 5.294306 ACACGTAGCACCATCAGATAAATTG 59.706 40.000 0.00 0.00 0.00 2.32
5346 7405 0.670546 TAGCTTCGCTGTCAGCCAAC 60.671 55.000 19.14 7.74 40.10 3.77
5374 7433 0.690762 AGGCTGGTTACACGTTGGAT 59.309 50.000 0.00 0.00 0.00 3.41
5389 7448 4.202121 ACGTTGGATGCGAGTTAGATGTAT 60.202 41.667 0.00 0.00 0.00 2.29
5427 7516 3.678289 TGCAGTGCATATTGAACAGAGT 58.322 40.909 15.37 0.00 31.71 3.24
5435 7711 6.591834 GTGCATATTGAACAGAGTGAGTAGTT 59.408 38.462 0.00 0.00 0.00 2.24
5487 7764 1.739562 GCTGTGTCTTGAGCTCCCG 60.740 63.158 12.15 1.79 32.12 5.14
5504 7781 4.511826 GCTCCCGATTTCATTACTAACAGG 59.488 45.833 0.00 0.00 0.00 4.00
5544 7852 4.314440 GGACAGCCCTCACGCACA 62.314 66.667 0.00 0.00 0.00 4.57
5622 7960 0.815213 AAACTGCAGCGACTCAGCAA 60.815 50.000 15.27 0.00 36.74 3.91
5626 7964 2.959357 GCAGCGACTCAGCAACACC 61.959 63.158 0.00 0.00 40.15 4.16
5651 8042 5.273170 CGTTCAATTCAACACACAGAACAT 58.727 37.500 0.00 0.00 35.00 2.71
5670 8061 7.498900 CAGAACATCACTTTTAGCATGGGTATA 59.501 37.037 0.00 0.00 0.00 1.47
5680 8071 7.581213 TTTAGCATGGGTATATGGACAAAAG 57.419 36.000 0.00 0.00 0.00 2.27
5713 8104 0.183971 TTTCGGCTCCCCAGTTGAAA 59.816 50.000 0.00 0.00 0.00 2.69
5774 8165 7.681939 TTTTCTGCGTGGAAGATATTTTAGT 57.318 32.000 0.00 0.00 0.00 2.24
5775 8166 6.662414 TTCTGCGTGGAAGATATTTTAGTG 57.338 37.500 0.00 0.00 0.00 2.74
5776 8167 4.570772 TCTGCGTGGAAGATATTTTAGTGC 59.429 41.667 0.00 0.00 0.00 4.40
5777 8168 3.308595 TGCGTGGAAGATATTTTAGTGCG 59.691 43.478 0.00 0.00 0.00 5.34
5778 8169 3.308866 GCGTGGAAGATATTTTAGTGCGT 59.691 43.478 0.00 0.00 0.00 5.24
5779 8170 4.782195 GCGTGGAAGATATTTTAGTGCGTG 60.782 45.833 0.00 0.00 0.00 5.34
5780 8171 4.565166 CGTGGAAGATATTTTAGTGCGTGA 59.435 41.667 0.00 0.00 0.00 4.35
5781 8172 5.276395 CGTGGAAGATATTTTAGTGCGTGAG 60.276 44.000 0.00 0.00 0.00 3.51
5782 8173 5.006746 GTGGAAGATATTTTAGTGCGTGAGG 59.993 44.000 0.00 0.00 0.00 3.86
5783 8174 5.116882 GGAAGATATTTTAGTGCGTGAGGT 58.883 41.667 0.00 0.00 0.00 3.85
5784 8175 5.234543 GGAAGATATTTTAGTGCGTGAGGTC 59.765 44.000 0.00 0.00 0.00 3.85
5785 8176 5.599999 AGATATTTTAGTGCGTGAGGTCT 57.400 39.130 0.00 0.00 0.00 3.85
5786 8177 5.352284 AGATATTTTAGTGCGTGAGGTCTG 58.648 41.667 0.00 0.00 0.00 3.51
5787 8178 1.508632 TTTTAGTGCGTGAGGTCTGC 58.491 50.000 0.00 0.00 0.00 4.26
5788 8179 0.679505 TTTAGTGCGTGAGGTCTGCT 59.320 50.000 0.00 0.00 0.00 4.24
5789 8180 0.243907 TTAGTGCGTGAGGTCTGCTC 59.756 55.000 0.00 0.00 0.00 4.26
5790 8181 1.595993 TAGTGCGTGAGGTCTGCTCC 61.596 60.000 0.00 0.00 0.00 4.70
5791 8182 2.917227 TGCGTGAGGTCTGCTCCA 60.917 61.111 0.00 0.00 0.00 3.86
5792 8183 2.343758 GCGTGAGGTCTGCTCCAA 59.656 61.111 0.00 0.00 0.00 3.53
5793 8184 1.301716 GCGTGAGGTCTGCTCCAAA 60.302 57.895 0.00 0.00 0.00 3.28
5794 8185 0.674895 GCGTGAGGTCTGCTCCAAAT 60.675 55.000 0.00 0.00 0.00 2.32
5795 8186 1.813513 CGTGAGGTCTGCTCCAAATT 58.186 50.000 0.00 0.00 0.00 1.82
5796 8187 2.154462 CGTGAGGTCTGCTCCAAATTT 58.846 47.619 0.00 0.00 0.00 1.82
5797 8188 2.160417 CGTGAGGTCTGCTCCAAATTTC 59.840 50.000 0.00 0.00 0.00 2.17
5798 8189 3.149196 GTGAGGTCTGCTCCAAATTTCA 58.851 45.455 0.00 0.00 0.00 2.69
5799 8190 3.760684 GTGAGGTCTGCTCCAAATTTCAT 59.239 43.478 0.00 0.00 0.00 2.57
5800 8191 4.012374 TGAGGTCTGCTCCAAATTTCATC 58.988 43.478 0.00 0.00 0.00 2.92
5801 8192 3.012518 AGGTCTGCTCCAAATTTCATCG 58.987 45.455 0.00 0.00 0.00 3.84
5802 8193 2.478539 GGTCTGCTCCAAATTTCATCGC 60.479 50.000 0.00 0.00 0.00 4.58
5803 8194 2.162208 GTCTGCTCCAAATTTCATCGCA 59.838 45.455 0.00 0.00 0.00 5.10
5804 8195 3.018856 TCTGCTCCAAATTTCATCGCAT 58.981 40.909 0.00 0.00 0.00 4.73
5805 8196 3.444742 TCTGCTCCAAATTTCATCGCATT 59.555 39.130 0.00 0.00 0.00 3.56
5806 8197 4.082081 TCTGCTCCAAATTTCATCGCATTT 60.082 37.500 0.00 0.00 0.00 2.32
5807 8198 3.927758 TGCTCCAAATTTCATCGCATTTG 59.072 39.130 0.00 0.00 39.25 2.32
5811 8202 4.587211 CAAATTTCATCGCATTTGGGTG 57.413 40.909 0.00 0.00 36.93 4.61
5812 8203 2.298411 ATTTCATCGCATTTGGGTGC 57.702 45.000 0.00 0.00 41.65 5.01
5813 8204 0.964700 TTTCATCGCATTTGGGTGCA 59.035 45.000 0.00 0.00 45.30 4.57
5814 8205 1.184431 TTCATCGCATTTGGGTGCAT 58.816 45.000 0.00 0.00 45.30 3.96
5815 8206 0.456628 TCATCGCATTTGGGTGCATG 59.543 50.000 0.00 0.00 45.30 4.06
5816 8207 0.456628 CATCGCATTTGGGTGCATGA 59.543 50.000 0.00 0.00 45.30 3.07
5817 8208 1.135053 CATCGCATTTGGGTGCATGAA 60.135 47.619 0.00 0.00 45.30 2.57
5818 8209 0.243365 TCGCATTTGGGTGCATGAAC 59.757 50.000 0.00 0.00 45.30 3.18
5819 8210 0.038435 CGCATTTGGGTGCATGAACA 60.038 50.000 6.08 0.00 45.30 3.18
5820 8211 1.717194 GCATTTGGGTGCATGAACAG 58.283 50.000 6.08 0.00 44.43 3.16
5821 8212 1.001181 GCATTTGGGTGCATGAACAGT 59.999 47.619 6.08 0.00 44.43 3.55
5822 8213 2.230992 GCATTTGGGTGCATGAACAGTA 59.769 45.455 6.08 0.00 44.43 2.74
5823 8214 3.305950 GCATTTGGGTGCATGAACAGTAA 60.306 43.478 6.08 0.00 44.43 2.24
5824 8215 4.798924 GCATTTGGGTGCATGAACAGTAAA 60.799 41.667 6.08 4.17 44.43 2.01
5825 8216 4.314740 TTTGGGTGCATGAACAGTAAAC 57.685 40.909 6.08 0.00 0.00 2.01
5826 8217 3.222173 TGGGTGCATGAACAGTAAACT 57.778 42.857 6.08 0.00 0.00 2.66
5827 8218 3.561143 TGGGTGCATGAACAGTAAACTT 58.439 40.909 6.08 0.00 0.00 2.66
5828 8219 3.957497 TGGGTGCATGAACAGTAAACTTT 59.043 39.130 6.08 0.00 0.00 2.66
5829 8220 4.404073 TGGGTGCATGAACAGTAAACTTTT 59.596 37.500 6.08 0.00 0.00 2.27
5830 8221 5.105146 TGGGTGCATGAACAGTAAACTTTTT 60.105 36.000 6.08 0.00 0.00 1.94
5850 8241 6.627395 TTTTTCACATACCTCGATTGTGTT 57.373 33.333 13.93 0.00 41.14 3.32
5851 8242 6.627395 TTTTCACATACCTCGATTGTGTTT 57.373 33.333 13.93 0.00 41.14 2.83
5852 8243 6.627395 TTTCACATACCTCGATTGTGTTTT 57.373 33.333 13.93 0.00 41.14 2.43
5853 8244 6.627395 TTCACATACCTCGATTGTGTTTTT 57.373 33.333 13.93 0.00 41.14 1.94
5883 8274 6.674694 AAGAGCTGCTTAGATGTACAAATG 57.325 37.500 2.53 0.00 34.31 2.32
5884 8275 5.121811 AGAGCTGCTTAGATGTACAAATGG 58.878 41.667 2.53 0.00 0.00 3.16
5885 8276 5.102953 AGCTGCTTAGATGTACAAATGGA 57.897 39.130 0.00 0.00 0.00 3.41
5886 8277 4.878397 AGCTGCTTAGATGTACAAATGGAC 59.122 41.667 0.00 0.00 0.00 4.02
5887 8278 4.878397 GCTGCTTAGATGTACAAATGGACT 59.122 41.667 0.00 0.00 0.00 3.85
5888 8279 6.049149 GCTGCTTAGATGTACAAATGGACTA 58.951 40.000 0.00 0.00 0.00 2.59
5889 8280 6.538742 GCTGCTTAGATGTACAAATGGACTAA 59.461 38.462 0.00 3.37 0.00 2.24
5890 8281 7.065803 GCTGCTTAGATGTACAAATGGACTAAA 59.934 37.037 0.00 0.00 0.00 1.85
5891 8282 8.856153 TGCTTAGATGTACAAATGGACTAAAA 57.144 30.769 0.00 0.00 0.00 1.52
5892 8283 9.461312 TGCTTAGATGTACAAATGGACTAAAAT 57.539 29.630 0.00 0.00 0.00 1.82
5897 8288 9.010029 AGATGTACAAATGGACTAAAATTTCGT 57.990 29.630 0.00 0.00 0.00 3.85
5903 8294 9.620660 ACAAATGGACTAAAATTTCGTATGAAC 57.379 29.630 0.00 0.00 32.71 3.18
5904 8295 9.072294 CAAATGGACTAAAATTTCGTATGAACC 57.928 33.333 0.00 0.00 32.71 3.62
5905 8296 8.575649 AATGGACTAAAATTTCGTATGAACCT 57.424 30.769 0.00 0.00 32.71 3.50
5906 8297 7.605410 TGGACTAAAATTTCGTATGAACCTC 57.395 36.000 0.00 0.00 32.71 3.85
5907 8298 7.162761 TGGACTAAAATTTCGTATGAACCTCA 58.837 34.615 0.00 0.00 32.71 3.86
5908 8299 7.118680 TGGACTAAAATTTCGTATGAACCTCAC 59.881 37.037 0.00 0.00 32.71 3.51
5909 8300 7.057149 ACTAAAATTTCGTATGAACCTCACG 57.943 36.000 0.00 0.00 37.03 4.35
5910 8301 4.336532 AAATTTCGTATGAACCTCACGC 57.663 40.909 0.00 0.00 35.70 5.34
5911 8302 2.442212 TTTCGTATGAACCTCACGCA 57.558 45.000 0.00 0.00 35.70 5.24
5912 8303 1.705256 TTCGTATGAACCTCACGCAC 58.295 50.000 0.00 0.00 35.70 5.34
5913 8304 0.885879 TCGTATGAACCTCACGCACT 59.114 50.000 0.00 0.00 35.70 4.40
5914 8305 2.086094 TCGTATGAACCTCACGCACTA 58.914 47.619 0.00 0.00 35.70 2.74
5915 8306 2.488937 TCGTATGAACCTCACGCACTAA 59.511 45.455 0.00 0.00 35.70 2.24
5916 8307 2.597305 CGTATGAACCTCACGCACTAAC 59.403 50.000 0.00 0.00 0.00 2.34
5917 8308 2.831685 ATGAACCTCACGCACTAACA 57.168 45.000 0.00 0.00 0.00 2.41
5918 8309 1.860676 TGAACCTCACGCACTAACAC 58.139 50.000 0.00 0.00 0.00 3.32
5919 8310 1.137282 TGAACCTCACGCACTAACACA 59.863 47.619 0.00 0.00 0.00 3.72
5920 8311 2.224185 TGAACCTCACGCACTAACACAT 60.224 45.455 0.00 0.00 0.00 3.21
5921 8312 2.080286 ACCTCACGCACTAACACATC 57.920 50.000 0.00 0.00 0.00 3.06
5922 8313 1.618837 ACCTCACGCACTAACACATCT 59.381 47.619 0.00 0.00 0.00 2.90
5923 8314 2.037251 ACCTCACGCACTAACACATCTT 59.963 45.455 0.00 0.00 0.00 2.40
5924 8315 2.668457 CCTCACGCACTAACACATCTTC 59.332 50.000 0.00 0.00 0.00 2.87
5925 8316 2.668457 CTCACGCACTAACACATCTTCC 59.332 50.000 0.00 0.00 0.00 3.46
5926 8317 2.036604 TCACGCACTAACACATCTTCCA 59.963 45.455 0.00 0.00 0.00 3.53
5927 8318 3.002791 CACGCACTAACACATCTTCCAT 58.997 45.455 0.00 0.00 0.00 3.41
5928 8319 3.002791 ACGCACTAACACATCTTCCATG 58.997 45.455 0.00 0.00 0.00 3.66
5929 8320 2.352651 CGCACTAACACATCTTCCATGG 59.647 50.000 4.97 4.97 0.00 3.66
5930 8321 3.609853 GCACTAACACATCTTCCATGGA 58.390 45.455 11.44 11.44 0.00 3.41
5931 8322 4.009675 GCACTAACACATCTTCCATGGAA 58.990 43.478 25.53 25.53 0.00 3.53
5932 8323 4.458989 GCACTAACACATCTTCCATGGAAA 59.541 41.667 26.87 17.85 33.34 3.13
5933 8324 5.048083 GCACTAACACATCTTCCATGGAAAA 60.048 40.000 26.87 16.21 33.34 2.29
5934 8325 6.516527 GCACTAACACATCTTCCATGGAAAAA 60.517 38.462 26.87 18.32 33.34 1.94
5970 8361 8.801715 TTTCTTGATCTTTTTACTGTTCATGC 57.198 30.769 0.00 0.00 0.00 4.06
5971 8362 7.509141 TCTTGATCTTTTTACTGTTCATGCA 57.491 32.000 0.00 0.00 0.00 3.96
5972 8363 7.362662 TCTTGATCTTTTTACTGTTCATGCAC 58.637 34.615 0.00 0.00 0.00 4.57
5973 8364 6.631971 TGATCTTTTTACTGTTCATGCACA 57.368 33.333 0.00 0.00 0.00 4.57
5974 8365 7.036996 TGATCTTTTTACTGTTCATGCACAA 57.963 32.000 0.00 0.00 0.00 3.33
5975 8366 7.140705 TGATCTTTTTACTGTTCATGCACAAG 58.859 34.615 0.00 0.00 0.00 3.16
5976 8367 6.691754 TCTTTTTACTGTTCATGCACAAGA 57.308 33.333 0.00 0.00 0.00 3.02
5977 8368 6.728200 TCTTTTTACTGTTCATGCACAAGAG 58.272 36.000 0.00 0.00 0.00 2.85
5978 8369 4.488126 TTTACTGTTCATGCACAAGAGC 57.512 40.909 0.00 0.00 0.00 4.09
5986 8377 2.850439 TGCACAAGAGCAGATGAGC 58.150 52.632 0.00 0.00 40.11 4.26
5993 8384 4.674306 AGCAGATGAGCTCTCGGA 57.326 55.556 16.19 0.00 42.18 4.55
5994 8385 2.417978 AGCAGATGAGCTCTCGGAG 58.582 57.895 16.19 0.00 42.18 4.63
6004 8395 3.297391 CTCTCGGAGCCATTTAGCC 57.703 57.895 0.00 0.00 0.00 3.93
6005 8396 0.598680 CTCTCGGAGCCATTTAGCCG 60.599 60.000 0.00 0.00 44.83 5.52
6006 8397 2.203015 TCGGAGCCATTTAGCCGC 60.203 61.111 0.00 0.00 43.26 6.53
6007 8398 2.203070 CGGAGCCATTTAGCCGCT 60.203 61.111 0.00 0.00 37.08 5.52
6008 8399 2.247437 CGGAGCCATTTAGCCGCTC 61.247 63.158 0.00 0.00 46.67 5.03
6009 8400 1.147153 GGAGCCATTTAGCCGCTCT 59.853 57.895 0.00 0.00 46.60 4.09
6010 8401 0.882484 GGAGCCATTTAGCCGCTCTC 60.882 60.000 0.00 0.00 46.60 3.20
6011 8402 0.179073 GAGCCATTTAGCCGCTCTCA 60.179 55.000 0.00 0.00 44.52 3.27
6012 8403 0.179062 AGCCATTTAGCCGCTCTCAG 60.179 55.000 0.00 0.00 0.00 3.35
6020 8411 0.033504 AGCCGCTCTCAGAAACGAAA 59.966 50.000 0.00 0.00 0.00 3.46
6028 8419 4.633565 GCTCTCAGAAACGAAAGGATCATT 59.366 41.667 0.00 0.00 0.00 2.57
6037 8428 1.064654 GAAAGGATCATTCAGCGTGCC 59.935 52.381 0.00 0.00 0.00 5.01
6038 8429 1.091771 AAGGATCATTCAGCGTGCCG 61.092 55.000 0.00 0.00 0.00 5.69
6039 8430 2.537560 GGATCATTCAGCGTGCCGG 61.538 63.158 0.00 0.00 0.00 6.13
6040 8431 3.173390 GATCATTCAGCGTGCCGGC 62.173 63.158 22.73 22.73 0.00 6.13
6041 8432 3.687321 ATCATTCAGCGTGCCGGCT 62.687 57.895 29.70 3.37 46.13 5.52
6062 8453 3.470888 CCGCCATCCTCCGTCCTT 61.471 66.667 0.00 0.00 0.00 3.36
6063 8454 2.202932 CGCCATCCTCCGTCCTTG 60.203 66.667 0.00 0.00 0.00 3.61
6064 8455 2.721167 CGCCATCCTCCGTCCTTGA 61.721 63.158 0.00 0.00 0.00 3.02
6065 8456 1.153349 GCCATCCTCCGTCCTTGAC 60.153 63.158 0.00 0.00 0.00 3.18
6066 8457 1.899437 GCCATCCTCCGTCCTTGACA 61.899 60.000 0.00 0.00 32.09 3.58
6067 8458 0.613260 CCATCCTCCGTCCTTGACAA 59.387 55.000 0.00 0.00 32.09 3.18
6068 8459 1.003118 CCATCCTCCGTCCTTGACAAA 59.997 52.381 0.00 0.00 32.09 2.83
6069 8460 2.350522 CATCCTCCGTCCTTGACAAAG 58.649 52.381 0.00 0.00 32.09 2.77
6080 8471 2.084546 CTTGACAAAGGATTCCCGTCC 58.915 52.381 12.52 0.00 38.62 4.79
6081 8472 1.060729 TGACAAAGGATTCCCGTCCA 58.939 50.000 12.52 0.00 40.90 4.02
6082 8473 1.003118 TGACAAAGGATTCCCGTCCAG 59.997 52.381 12.52 0.00 40.90 3.86
6083 8474 0.322546 ACAAAGGATTCCCGTCCAGC 60.323 55.000 0.00 0.00 40.90 4.85
6084 8475 1.032114 CAAAGGATTCCCGTCCAGCC 61.032 60.000 0.00 0.00 40.90 4.85
6085 8476 1.497309 AAAGGATTCCCGTCCAGCCA 61.497 55.000 0.00 0.00 40.90 4.75
6086 8477 1.281925 AAGGATTCCCGTCCAGCCAT 61.282 55.000 0.00 0.00 40.90 4.40
6087 8478 1.526917 GGATTCCCGTCCAGCCATG 60.527 63.158 0.00 0.00 38.20 3.66
6088 8479 2.124151 ATTCCCGTCCAGCCATGC 60.124 61.111 0.00 0.00 0.00 4.06
6089 8480 2.615227 GATTCCCGTCCAGCCATGCT 62.615 60.000 0.00 0.00 40.77 3.79
6099 8490 2.575108 AGCCATGCTGTCATGTTGG 58.425 52.632 9.91 0.00 46.64 3.77
6100 8491 0.038599 AGCCATGCTGTCATGTTGGA 59.961 50.000 9.91 0.00 46.64 3.53
6101 8492 0.454600 GCCATGCTGTCATGTTGGAG 59.545 55.000 9.91 0.00 46.64 3.86
6102 8493 1.951895 GCCATGCTGTCATGTTGGAGA 60.952 52.381 9.91 0.00 46.64 3.71
6103 8494 2.014857 CCATGCTGTCATGTTGGAGAG 58.985 52.381 9.91 0.00 46.64 3.20
6104 8495 2.014857 CATGCTGTCATGTTGGAGAGG 58.985 52.381 0.00 0.00 43.85 3.69
6105 8496 0.321919 TGCTGTCATGTTGGAGAGGC 60.322 55.000 0.00 0.00 0.00 4.70
6106 8497 1.028868 GCTGTCATGTTGGAGAGGCC 61.029 60.000 0.00 0.00 37.10 5.19
6107 8498 0.742281 CTGTCATGTTGGAGAGGCCG 60.742 60.000 0.00 0.00 40.66 6.13
6108 8499 1.296715 GTCATGTTGGAGAGGCCGT 59.703 57.895 0.00 0.00 40.66 5.68
6109 8500 0.741221 GTCATGTTGGAGAGGCCGTC 60.741 60.000 0.00 0.00 40.66 4.79
6110 8501 1.191489 TCATGTTGGAGAGGCCGTCA 61.191 55.000 10.03 0.00 40.66 4.35
6111 8502 1.021390 CATGTTGGAGAGGCCGTCAC 61.021 60.000 10.03 1.54 40.66 3.67
6112 8503 2.432628 GTTGGAGAGGCCGTCACG 60.433 66.667 10.03 0.00 40.66 4.35
6131 8522 1.441016 GCGCGCTTTCTGAAGGTTG 60.441 57.895 26.67 0.00 33.34 3.77
6136 8527 0.875059 GCTTTCTGAAGGTTGGACCG 59.125 55.000 1.37 0.00 44.90 4.79
6137 8528 1.523758 CTTTCTGAAGGTTGGACCGG 58.476 55.000 0.00 0.00 44.90 5.28
6138 8529 0.109723 TTTCTGAAGGTTGGACCGGG 59.890 55.000 6.32 0.00 44.90 5.73
6143 8534 0.321034 GAAGGTTGGACCGGGTGTAC 60.321 60.000 3.30 0.00 44.90 2.90
6147 8538 0.393820 GTTGGACCGGGTGTACAGAA 59.606 55.000 3.30 0.00 39.56 3.02
6155 8546 2.482721 CCGGGTGTACAGAAAATGACAC 59.517 50.000 0.00 0.00 38.32 3.67
6180 8571 4.763793 TGAGTAAGTTCACGTTAGTAGGCT 59.236 41.667 0.00 0.00 0.00 4.58
6181 8572 5.242393 TGAGTAAGTTCACGTTAGTAGGCTT 59.758 40.000 0.00 0.00 0.00 4.35
6182 8573 6.430925 TGAGTAAGTTCACGTTAGTAGGCTTA 59.569 38.462 0.00 0.00 0.00 3.09
6236 8629 5.890985 TGTTTTCCTGAGTCTGAAAAATGGA 59.109 36.000 17.21 0.00 40.87 3.41
6237 8630 6.039717 TGTTTTCCTGAGTCTGAAAAATGGAG 59.960 38.462 17.21 0.00 40.87 3.86
6244 8637 2.094854 GTCTGAAAAATGGAGGCAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
6257 8651 0.815213 GCAGCAGCGACCATAATCCA 60.815 55.000 0.00 0.00 0.00 3.41
6258 8652 1.888215 CAGCAGCGACCATAATCCAT 58.112 50.000 0.00 0.00 0.00 3.41
6277 8671 3.495100 CCATTTCCGATCCCTACCAGAAG 60.495 52.174 0.00 0.00 0.00 2.85
6278 8672 2.840640 TTCCGATCCCTACCAGAAGA 57.159 50.000 0.00 0.00 0.00 2.87
6279 8673 2.366640 TCCGATCCCTACCAGAAGAG 57.633 55.000 0.00 0.00 0.00 2.85
6280 8674 1.569548 TCCGATCCCTACCAGAAGAGT 59.430 52.381 0.00 0.00 0.00 3.24
6281 8675 2.781757 TCCGATCCCTACCAGAAGAGTA 59.218 50.000 0.00 0.00 0.00 2.59
6282 8676 3.150767 CCGATCCCTACCAGAAGAGTAG 58.849 54.545 0.00 0.00 37.53 2.57
6283 8677 2.554893 CGATCCCTACCAGAAGAGTAGC 59.445 54.545 0.00 0.00 36.65 3.58
6284 8678 3.567397 GATCCCTACCAGAAGAGTAGCA 58.433 50.000 0.00 0.00 36.65 3.49
6285 8679 3.689872 TCCCTACCAGAAGAGTAGCAT 57.310 47.619 0.00 0.00 36.65 3.79
6286 8680 4.808767 TCCCTACCAGAAGAGTAGCATA 57.191 45.455 0.00 0.00 36.65 3.14
6287 8681 5.138758 TCCCTACCAGAAGAGTAGCATAA 57.861 43.478 0.00 0.00 36.65 1.90
6288 8682 5.525484 TCCCTACCAGAAGAGTAGCATAAA 58.475 41.667 0.00 0.00 36.65 1.40
6289 8683 5.962031 TCCCTACCAGAAGAGTAGCATAAAA 59.038 40.000 0.00 0.00 36.65 1.52
6290 8684 6.049790 CCCTACCAGAAGAGTAGCATAAAAC 58.950 44.000 0.00 0.00 36.65 2.43
6291 8685 6.127026 CCCTACCAGAAGAGTAGCATAAAACT 60.127 42.308 0.00 0.00 36.65 2.66
6292 8686 7.069578 CCCTACCAGAAGAGTAGCATAAAACTA 59.930 40.741 0.00 0.00 36.65 2.24
6293 8687 7.921745 CCTACCAGAAGAGTAGCATAAAACTAC 59.078 40.741 0.00 0.00 40.28 2.73
6307 8701 8.711170 AGCATAAAACTACTACTTTATAGGCCA 58.289 33.333 5.01 0.00 0.00 5.36
6308 8702 8.989980 GCATAAAACTACTACTTTATAGGCCAG 58.010 37.037 5.01 0.00 0.00 4.85
6309 8703 9.490379 CATAAAACTACTACTTTATAGGCCAGG 57.510 37.037 5.01 0.00 0.00 4.45
6310 8704 6.496144 AAACTACTACTTTATAGGCCAGGG 57.504 41.667 5.01 0.00 0.00 4.45
6311 8705 5.153670 ACTACTACTTTATAGGCCAGGGT 57.846 43.478 5.01 0.00 0.00 4.34
6312 8706 5.535990 ACTACTACTTTATAGGCCAGGGTT 58.464 41.667 5.01 0.00 0.00 4.11
6313 8707 6.686544 ACTACTACTTTATAGGCCAGGGTTA 58.313 40.000 5.01 0.00 0.00 2.85
6314 8708 7.311407 ACTACTACTTTATAGGCCAGGGTTAT 58.689 38.462 5.01 0.00 0.00 1.89
6315 8709 8.459394 ACTACTACTTTATAGGCCAGGGTTATA 58.541 37.037 5.01 0.00 0.00 0.98
6316 8710 9.317827 CTACTACTTTATAGGCCAGGGTTATAA 57.682 37.037 5.01 1.03 0.00 0.98
6317 8711 8.571460 ACTACTTTATAGGCCAGGGTTATAAA 57.429 34.615 5.01 9.50 31.81 1.40
6318 8712 9.006405 ACTACTTTATAGGCCAGGGTTATAAAA 57.994 33.333 5.01 0.00 32.13 1.52
6319 8713 9.856162 CTACTTTATAGGCCAGGGTTATAAAAA 57.144 33.333 5.01 1.63 32.13 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.280797 TGTTGCCACACTCGCCTC 60.281 61.111 0.00 0.00 0.00 4.70
74 75 7.768582 TGTTCAAGTCTGATCTTGTCTGTTTTA 59.231 33.333 14.95 0.00 43.44 1.52
77 78 5.674525 TGTTCAAGTCTGATCTTGTCTGTT 58.325 37.500 14.95 0.00 43.44 3.16
81 82 5.537188 ACTCTGTTCAAGTCTGATCTTGTC 58.463 41.667 14.95 11.57 43.44 3.18
85 86 7.658525 ATCATACTCTGTTCAAGTCTGATCT 57.341 36.000 0.00 0.00 36.43 2.75
148 152 3.446507 GGACGCTGGTTTATCCGAA 57.553 52.632 0.00 0.00 39.52 4.30
156 167 2.978010 CAAAGGCGGACGCTGGTT 60.978 61.111 16.72 5.30 41.60 3.67
570 581 1.080501 CAGACGACGACCATGCAGT 60.081 57.895 0.00 0.00 0.00 4.40
571 582 2.447887 GCAGACGACGACCATGCAG 61.448 63.158 0.00 0.00 36.88 4.41
656 679 2.889503 CTGCTGCAGCTACGCCTC 60.890 66.667 36.61 8.49 42.66 4.70
668 691 2.436292 GTGCTGGAGAGGCTGCTG 60.436 66.667 0.00 0.00 0.00 4.41
673 696 4.400961 AAGCGGTGCTGGAGAGGC 62.401 66.667 0.00 0.00 39.62 4.70
757 864 2.737679 GCTTCCCATATATACGCGACCC 60.738 54.545 15.93 0.00 0.00 4.46
785 892 4.021632 AGTTACTGTTCTACTCGGTTTCCC 60.022 45.833 0.00 0.00 0.00 3.97
797 904 1.677552 CCCGGCCAGTTACTGTTCT 59.322 57.895 11.68 0.00 0.00 3.01
828 948 2.281276 GAAACGAGGTTGGGCCGT 60.281 61.111 0.00 0.00 43.70 5.68
890 1014 1.748493 GAAATGCTATGCGGTTGGGAA 59.252 47.619 0.00 0.00 0.00 3.97
924 1048 4.965062 TCGATTTGATTTCGTTACCAAGC 58.035 39.130 0.00 0.00 37.82 4.01
932 1064 2.160813 CGGGGTTTCGATTTGATTTCGT 59.839 45.455 0.00 0.00 37.82 3.85
934 1066 2.750712 TCCGGGGTTTCGATTTGATTTC 59.249 45.455 0.00 0.00 0.00 2.17
1545 1992 2.223829 GGTGATGTAGGTCATGAGGTCG 60.224 54.545 0.00 0.00 36.83 4.79
1779 2226 2.663602 CTCGAACTTCTGAATGTCGGTG 59.336 50.000 17.46 10.40 0.00 4.94
1780 2227 2.352814 CCTCGAACTTCTGAATGTCGGT 60.353 50.000 17.46 0.00 0.00 4.69
1786 2233 0.608640 ACCGCCTCGAACTTCTGAAT 59.391 50.000 0.00 0.00 0.00 2.57
2182 2630 6.928979 TTCGTGAAAGAGTAAAAACATGGA 57.071 33.333 0.00 0.00 0.00 3.41
2183 2631 6.582295 CCATTCGTGAAAGAGTAAAAACATGG 59.418 38.462 0.00 0.00 0.00 3.66
2203 2652 7.126398 GTGCTTAGATAACAATCGAACCATTC 58.874 38.462 0.00 0.00 0.00 2.67
2465 3326 0.871722 TGTAAACTGCATGACCGCAC 59.128 50.000 0.00 0.00 36.86 5.34
2546 3445 8.911247 AACAAGCAGTAAAACAAGTTAAGAAG 57.089 30.769 0.00 0.00 0.00 2.85
2728 3651 5.389935 CCAGATCTTAAGAACAAACGACTGC 60.390 44.000 9.71 0.00 0.00 4.40
3017 3946 3.365832 GCCGATTTGCAACATGATACTG 58.634 45.455 0.00 0.00 0.00 2.74
3048 3977 2.322161 CTTGCTGGAAATGCTTTCACG 58.678 47.619 9.75 0.00 41.43 4.35
3112 4050 3.873801 GCCTAAACATGTGTCCATCACCT 60.874 47.826 0.00 0.00 45.61 4.00
3369 4314 8.258007 CACTGAGGGACAATACTTAAGAATACA 58.742 37.037 10.09 0.00 0.00 2.29
3400 4345 2.928801 TGCTTCAGTCTGCCACTAAA 57.071 45.000 0.00 0.00 32.21 1.85
3652 4614 4.874966 GTCTCATTAGCAAGAGCATTCAGT 59.125 41.667 0.00 0.00 45.49 3.41
3655 4617 7.405769 GTTTAGTCTCATTAGCAAGAGCATTC 58.594 38.462 0.00 0.00 45.49 2.67
3686 4648 6.915544 TGACTCATCATGCTTTGAGATAAC 57.084 37.500 20.23 11.89 41.53 1.89
3854 4819 4.407365 AGGGTTAAAATGGACTTCAGGTG 58.593 43.478 0.00 0.00 0.00 4.00
4043 5015 3.627577 AGCCAACTGTTTTCTACACTGTG 59.372 43.478 6.19 6.19 32.10 3.66
4057 5029 6.094048 ACAGCACATAACTAATAAGCCAACTG 59.906 38.462 0.00 0.00 0.00 3.16
4242 5303 8.515414 GCTAACTTATTCATCTGAAAACCAACT 58.485 33.333 0.00 0.00 37.61 3.16
4304 5365 5.103940 ACAGTATGATTAGGTTTGCCCTGAT 60.104 40.000 0.00 0.00 41.61 2.90
4351 5412 9.042008 TCTCTAACTTTGACAACTGATGTTTAC 57.958 33.333 0.00 0.00 44.12 2.01
4674 5887 3.324117 CAAGATATGGCATCTGACTCCG 58.676 50.000 1.65 0.00 0.00 4.63
4741 5961 6.425114 TCTCTTCATGTTGTTTCTAGCAAGTC 59.575 38.462 0.00 0.00 0.00 3.01
4795 6019 8.677300 TCTTAAGCATCCATGTCATTTAAAGAC 58.323 33.333 0.00 9.52 36.55 3.01
4813 6037 3.508845 AAGGCAACCTTCTCTTAAGCA 57.491 42.857 0.00 0.00 40.17 3.91
5002 7060 5.003804 TGTGATGTTCCTTTTTCTCTAGCC 58.996 41.667 0.00 0.00 0.00 3.93
5048 7106 6.040504 ACCATGTTACCTTCAAAAACTCTTCC 59.959 38.462 0.00 0.00 0.00 3.46
5099 7158 1.063006 CTACGTGTGCCATGCATGC 59.937 57.895 21.69 11.82 41.91 4.06
5100 7159 1.063006 GCTACGTGTGCCATGCATG 59.937 57.895 20.19 20.19 41.91 4.06
5101 7160 1.377072 TGCTACGTGTGCCATGCAT 60.377 52.632 11.79 0.00 41.91 3.96
5102 7161 2.031768 TGCTACGTGTGCCATGCA 59.968 55.556 11.79 0.00 35.60 3.96
5117 7176 5.170021 TGCAAACAATTTATCTGATGGTGC 58.830 37.500 0.00 0.62 0.00 5.01
5147 7206 0.730834 CGAGTTCTGCCGAGTCACAG 60.731 60.000 4.17 4.17 35.15 3.66
5279 7338 0.526524 CTTCATCTCGGCAGTCGACC 60.527 60.000 13.01 0.00 43.74 4.79
5346 7405 3.735208 CGTGTAACCAGCCTCAGACTATG 60.735 52.174 0.00 0.00 0.00 2.23
5374 7433 3.004419 CGAGGGAATACATCTAACTCGCA 59.996 47.826 0.00 0.00 38.67 5.10
5389 7448 1.562008 TGCATTATGGAACCGAGGGAA 59.438 47.619 0.00 0.00 0.00 3.97
5427 7516 7.317390 TCTAAACGCATCATACAAACTACTCA 58.683 34.615 0.00 0.00 0.00 3.41
5435 7711 7.333174 TCAACAATCTCTAAACGCATCATACAA 59.667 33.333 0.00 0.00 0.00 2.41
5487 7764 7.094805 TGCACAAGACCTGTTAGTAATGAAATC 60.095 37.037 0.00 0.00 35.47 2.17
5536 7844 3.889227 GCTAATGGCTGTGCGTGA 58.111 55.556 0.00 0.00 38.06 4.35
5561 7869 6.013725 TGTTTCCCTACTTTCAATCAGCTCTA 60.014 38.462 0.00 0.00 0.00 2.43
5568 7876 4.379918 GCTGCTGTTTCCCTACTTTCAATC 60.380 45.833 0.00 0.00 0.00 2.67
5570 7878 2.884639 GCTGCTGTTTCCCTACTTTCAA 59.115 45.455 0.00 0.00 0.00 2.69
5622 7960 1.018148 TGTTGAATTGAACGCGGTGT 58.982 45.000 12.47 0.00 0.00 4.16
5626 7964 2.036217 CTGTGTGTTGAATTGAACGCG 58.964 47.619 15.08 3.53 38.87 6.01
5651 8042 6.126623 TGTCCATATACCCATGCTAAAAGTGA 60.127 38.462 0.00 0.00 0.00 3.41
5670 8061 7.645058 ATGGATATTCGTTTCTTTTGTCCAT 57.355 32.000 0.00 0.00 38.68 3.41
5680 8071 4.319549 GGAGCCGAAATGGATATTCGTTTC 60.320 45.833 16.08 16.08 46.11 2.78
5753 8144 4.570772 GCACTAAAATATCTTCCACGCAGA 59.429 41.667 0.00 0.00 0.00 4.26
5754 8145 4.550831 CGCACTAAAATATCTTCCACGCAG 60.551 45.833 0.00 0.00 0.00 5.18
5755 8146 3.308595 CGCACTAAAATATCTTCCACGCA 59.691 43.478 0.00 0.00 0.00 5.24
5756 8147 3.308866 ACGCACTAAAATATCTTCCACGC 59.691 43.478 0.00 0.00 0.00 5.34
5757 8148 4.565166 TCACGCACTAAAATATCTTCCACG 59.435 41.667 0.00 0.00 0.00 4.94
5758 8149 5.006746 CCTCACGCACTAAAATATCTTCCAC 59.993 44.000 0.00 0.00 0.00 4.02
5759 8150 5.116180 CCTCACGCACTAAAATATCTTCCA 58.884 41.667 0.00 0.00 0.00 3.53
5761 8152 6.019479 CAGACCTCACGCACTAAAATATCTTC 60.019 42.308 0.00 0.00 0.00 2.87
5762 8153 5.812642 CAGACCTCACGCACTAAAATATCTT 59.187 40.000 0.00 0.00 0.00 2.40
5763 8154 5.352284 CAGACCTCACGCACTAAAATATCT 58.648 41.667 0.00 0.00 0.00 1.98
5764 8155 4.025647 GCAGACCTCACGCACTAAAATATC 60.026 45.833 0.00 0.00 0.00 1.63
5765 8156 3.871594 GCAGACCTCACGCACTAAAATAT 59.128 43.478 0.00 0.00 0.00 1.28
5766 8157 3.056107 AGCAGACCTCACGCACTAAAATA 60.056 43.478 0.00 0.00 0.00 1.40
5767 8158 2.076863 GCAGACCTCACGCACTAAAAT 58.923 47.619 0.00 0.00 0.00 1.82
5768 8159 1.070134 AGCAGACCTCACGCACTAAAA 59.930 47.619 0.00 0.00 0.00 1.52
5769 8160 0.679505 AGCAGACCTCACGCACTAAA 59.320 50.000 0.00 0.00 0.00 1.85
5770 8161 0.243907 GAGCAGACCTCACGCACTAA 59.756 55.000 0.00 0.00 40.45 2.24
5771 8162 1.595993 GGAGCAGACCTCACGCACTA 61.596 60.000 0.00 0.00 42.62 2.74
5772 8163 2.653702 GAGCAGACCTCACGCACT 59.346 61.111 0.00 0.00 40.45 4.40
5773 8164 2.433318 GGAGCAGACCTCACGCAC 60.433 66.667 0.00 0.00 42.62 5.34
5774 8165 2.038814 TTTGGAGCAGACCTCACGCA 62.039 55.000 0.00 0.00 42.62 5.24
5775 8166 0.674895 ATTTGGAGCAGACCTCACGC 60.675 55.000 0.00 0.00 42.62 5.34
5776 8167 1.813513 AATTTGGAGCAGACCTCACG 58.186 50.000 0.00 0.00 42.62 4.35
5777 8168 3.149196 TGAAATTTGGAGCAGACCTCAC 58.851 45.455 0.00 0.00 42.62 3.51
5778 8169 3.507162 TGAAATTTGGAGCAGACCTCA 57.493 42.857 0.00 0.00 42.62 3.86
5779 8170 3.064545 CGATGAAATTTGGAGCAGACCTC 59.935 47.826 0.00 0.00 39.98 3.85
5780 8171 3.012518 CGATGAAATTTGGAGCAGACCT 58.987 45.455 0.00 0.00 0.00 3.85
5781 8172 2.478539 GCGATGAAATTTGGAGCAGACC 60.479 50.000 0.00 0.00 0.00 3.85
5782 8173 2.162208 TGCGATGAAATTTGGAGCAGAC 59.838 45.455 0.00 0.00 0.00 3.51
5783 8174 2.435422 TGCGATGAAATTTGGAGCAGA 58.565 42.857 0.00 0.00 0.00 4.26
5784 8175 2.925578 TGCGATGAAATTTGGAGCAG 57.074 45.000 0.00 0.00 0.00 4.24
5785 8176 3.872511 AATGCGATGAAATTTGGAGCA 57.127 38.095 0.00 2.55 37.54 4.26
5786 8177 4.509915 CAAATGCGATGAAATTTGGAGC 57.490 40.909 0.00 0.00 39.19 4.70
5790 8181 3.181518 GCACCCAAATGCGATGAAATTTG 60.182 43.478 0.00 0.00 41.41 2.32
5791 8182 3.002102 GCACCCAAATGCGATGAAATTT 58.998 40.909 0.00 0.00 35.50 1.82
5792 8183 2.620242 GCACCCAAATGCGATGAAATT 58.380 42.857 0.00 0.00 35.50 1.82
5793 8184 2.298411 GCACCCAAATGCGATGAAAT 57.702 45.000 0.00 0.00 35.50 2.17
5794 8185 3.810579 GCACCCAAATGCGATGAAA 57.189 47.368 0.00 0.00 35.50 2.69
5801 8192 1.001181 ACTGTTCATGCACCCAAATGC 59.999 47.619 0.00 0.00 46.32 3.56
5802 8193 4.517952 TTACTGTTCATGCACCCAAATG 57.482 40.909 0.00 0.00 0.00 2.32
5803 8194 4.588528 AGTTTACTGTTCATGCACCCAAAT 59.411 37.500 0.00 0.00 0.00 2.32
5804 8195 3.957497 AGTTTACTGTTCATGCACCCAAA 59.043 39.130 0.00 0.00 0.00 3.28
5805 8196 3.561143 AGTTTACTGTTCATGCACCCAA 58.439 40.909 0.00 0.00 0.00 4.12
5806 8197 3.222173 AGTTTACTGTTCATGCACCCA 57.778 42.857 0.00 0.00 0.00 4.51
5807 8198 4.584327 AAAGTTTACTGTTCATGCACCC 57.416 40.909 0.00 0.00 0.00 4.61
5827 8218 6.627395 AACACAATCGAGGTATGTGAAAAA 57.373 33.333 22.34 0.00 45.61 1.94
5828 8219 6.627395 AAACACAATCGAGGTATGTGAAAA 57.373 33.333 22.34 0.00 45.61 2.29
5829 8220 6.627395 AAAACACAATCGAGGTATGTGAAA 57.373 33.333 22.34 0.00 45.61 2.69
5830 8221 6.627395 AAAAACACAATCGAGGTATGTGAA 57.373 33.333 22.34 0.00 45.61 3.18
5859 8250 6.763135 CCATTTGTACATCTAAGCAGCTCTTA 59.237 38.462 0.00 0.00 36.25 2.10
5860 8251 5.587844 CCATTTGTACATCTAAGCAGCTCTT 59.412 40.000 0.00 4.26 38.79 2.85
5861 8252 5.104776 TCCATTTGTACATCTAAGCAGCTCT 60.105 40.000 0.00 0.00 0.00 4.09
5862 8253 5.007136 GTCCATTTGTACATCTAAGCAGCTC 59.993 44.000 0.00 0.00 0.00 4.09
5863 8254 4.878397 GTCCATTTGTACATCTAAGCAGCT 59.122 41.667 0.00 0.00 0.00 4.24
5864 8255 4.878397 AGTCCATTTGTACATCTAAGCAGC 59.122 41.667 0.00 0.00 0.00 5.25
5865 8256 8.492673 TTTAGTCCATTTGTACATCTAAGCAG 57.507 34.615 0.00 0.00 0.00 4.24
5866 8257 8.856153 TTTTAGTCCATTTGTACATCTAAGCA 57.144 30.769 0.00 0.00 0.00 3.91
5871 8262 9.010029 ACGAAATTTTAGTCCATTTGTACATCT 57.990 29.630 0.00 0.00 0.00 2.90
5877 8268 9.620660 GTTCATACGAAATTTTAGTCCATTTGT 57.379 29.630 0.00 0.00 31.43 2.83
5878 8269 9.072294 GGTTCATACGAAATTTTAGTCCATTTG 57.928 33.333 0.00 0.00 31.43 2.32
5879 8270 9.020731 AGGTTCATACGAAATTTTAGTCCATTT 57.979 29.630 0.00 0.00 31.43 2.32
5880 8271 8.575649 AGGTTCATACGAAATTTTAGTCCATT 57.424 30.769 0.00 0.00 31.43 3.16
5881 8272 7.827236 TGAGGTTCATACGAAATTTTAGTCCAT 59.173 33.333 0.00 0.00 31.43 3.41
5882 8273 7.118680 GTGAGGTTCATACGAAATTTTAGTCCA 59.881 37.037 0.00 0.00 31.43 4.02
5883 8274 7.461918 GTGAGGTTCATACGAAATTTTAGTCC 58.538 38.462 0.00 0.00 31.43 3.85
5884 8275 7.171434 CGTGAGGTTCATACGAAATTTTAGTC 58.829 38.462 0.00 0.00 40.01 2.59
5885 8276 6.401796 GCGTGAGGTTCATACGAAATTTTAGT 60.402 38.462 0.00 0.59 40.01 2.24
5886 8277 5.957796 GCGTGAGGTTCATACGAAATTTTAG 59.042 40.000 0.00 0.00 40.01 1.85
5887 8278 5.408909 TGCGTGAGGTTCATACGAAATTTTA 59.591 36.000 0.00 0.00 40.01 1.52
5888 8279 4.214545 TGCGTGAGGTTCATACGAAATTTT 59.785 37.500 0.00 0.00 40.01 1.82
5889 8280 3.749088 TGCGTGAGGTTCATACGAAATTT 59.251 39.130 0.00 0.00 40.01 1.82
5890 8281 3.124636 GTGCGTGAGGTTCATACGAAATT 59.875 43.478 0.00 0.00 40.01 1.82
5891 8282 2.671396 GTGCGTGAGGTTCATACGAAAT 59.329 45.455 0.00 0.00 40.01 2.17
5892 8283 2.063266 GTGCGTGAGGTTCATACGAAA 58.937 47.619 0.00 0.00 40.01 3.46
5893 8284 1.271379 AGTGCGTGAGGTTCATACGAA 59.729 47.619 0.00 0.00 40.01 3.85
5894 8285 0.885879 AGTGCGTGAGGTTCATACGA 59.114 50.000 0.00 0.00 40.01 3.43
5895 8286 2.554806 TAGTGCGTGAGGTTCATACG 57.445 50.000 0.00 0.00 40.52 3.06
5896 8287 3.367025 GTGTTAGTGCGTGAGGTTCATAC 59.633 47.826 0.00 0.00 0.00 2.39
5897 8288 3.006003 TGTGTTAGTGCGTGAGGTTCATA 59.994 43.478 0.00 0.00 0.00 2.15
5898 8289 2.224185 TGTGTTAGTGCGTGAGGTTCAT 60.224 45.455 0.00 0.00 0.00 2.57
5899 8290 1.137282 TGTGTTAGTGCGTGAGGTTCA 59.863 47.619 0.00 0.00 0.00 3.18
5900 8291 1.860676 TGTGTTAGTGCGTGAGGTTC 58.139 50.000 0.00 0.00 0.00 3.62
5901 8292 2.037251 AGATGTGTTAGTGCGTGAGGTT 59.963 45.455 0.00 0.00 0.00 3.50
5902 8293 1.618837 AGATGTGTTAGTGCGTGAGGT 59.381 47.619 0.00 0.00 0.00 3.85
5903 8294 2.370281 AGATGTGTTAGTGCGTGAGG 57.630 50.000 0.00 0.00 0.00 3.86
5904 8295 2.668457 GGAAGATGTGTTAGTGCGTGAG 59.332 50.000 0.00 0.00 0.00 3.51
5905 8296 2.036604 TGGAAGATGTGTTAGTGCGTGA 59.963 45.455 0.00 0.00 0.00 4.35
5906 8297 2.412870 TGGAAGATGTGTTAGTGCGTG 58.587 47.619 0.00 0.00 0.00 5.34
5907 8298 2.831685 TGGAAGATGTGTTAGTGCGT 57.168 45.000 0.00 0.00 0.00 5.24
5908 8299 2.352651 CCATGGAAGATGTGTTAGTGCG 59.647 50.000 5.56 0.00 0.00 5.34
5909 8300 3.609853 TCCATGGAAGATGTGTTAGTGC 58.390 45.455 13.46 0.00 0.00 4.40
5910 8301 6.573664 TTTTCCATGGAAGATGTGTTAGTG 57.426 37.500 25.69 0.00 35.38 2.74
5944 8335 9.415544 GCATGAACAGTAAAAAGATCAAGAAAT 57.584 29.630 0.00 0.00 0.00 2.17
5945 8336 8.412456 TGCATGAACAGTAAAAAGATCAAGAAA 58.588 29.630 0.00 0.00 0.00 2.52
5946 8337 7.862372 GTGCATGAACAGTAAAAAGATCAAGAA 59.138 33.333 0.00 0.00 0.00 2.52
5947 8338 7.013178 TGTGCATGAACAGTAAAAAGATCAAGA 59.987 33.333 1.03 0.00 0.00 3.02
5948 8339 7.140705 TGTGCATGAACAGTAAAAAGATCAAG 58.859 34.615 1.03 0.00 0.00 3.02
5949 8340 7.036996 TGTGCATGAACAGTAAAAAGATCAA 57.963 32.000 1.03 0.00 0.00 2.57
5950 8341 6.631971 TGTGCATGAACAGTAAAAAGATCA 57.368 33.333 1.03 0.00 0.00 2.92
5951 8342 7.362662 TCTTGTGCATGAACAGTAAAAAGATC 58.637 34.615 6.62 0.00 0.00 2.75
5952 8343 7.275888 TCTTGTGCATGAACAGTAAAAAGAT 57.724 32.000 6.62 0.00 0.00 2.40
5953 8344 6.691754 TCTTGTGCATGAACAGTAAAAAGA 57.308 33.333 6.62 3.05 0.00 2.52
5954 8345 5.400485 GCTCTTGTGCATGAACAGTAAAAAG 59.600 40.000 6.62 0.42 0.00 2.27
5955 8346 5.163571 TGCTCTTGTGCATGAACAGTAAAAA 60.164 36.000 6.62 0.00 38.12 1.94
5956 8347 4.337836 TGCTCTTGTGCATGAACAGTAAAA 59.662 37.500 6.62 0.00 38.12 1.52
5957 8348 3.882288 TGCTCTTGTGCATGAACAGTAAA 59.118 39.130 6.62 0.00 38.12 2.01
5958 8349 3.475575 TGCTCTTGTGCATGAACAGTAA 58.524 40.909 6.62 0.00 38.12 2.24
5959 8350 3.069289 CTGCTCTTGTGCATGAACAGTA 58.931 45.455 6.62 0.00 42.48 2.74
5960 8351 1.878088 CTGCTCTTGTGCATGAACAGT 59.122 47.619 6.62 0.00 42.48 3.55
5961 8352 2.148768 TCTGCTCTTGTGCATGAACAG 58.851 47.619 6.62 1.92 42.48 3.16
5962 8353 2.259266 TCTGCTCTTGTGCATGAACA 57.741 45.000 1.03 1.03 42.48 3.18
5963 8354 2.745821 TCATCTGCTCTTGTGCATGAAC 59.254 45.455 0.00 0.00 42.48 3.18
5964 8355 3.007635 CTCATCTGCTCTTGTGCATGAA 58.992 45.455 0.00 0.00 42.48 2.57
5965 8356 2.629051 CTCATCTGCTCTTGTGCATGA 58.371 47.619 0.00 0.51 42.48 3.07
5966 8357 1.064208 GCTCATCTGCTCTTGTGCATG 59.936 52.381 0.00 0.00 42.48 4.06
5967 8358 1.065345 AGCTCATCTGCTCTTGTGCAT 60.065 47.619 0.00 0.00 42.48 3.96
5968 8359 0.323957 AGCTCATCTGCTCTTGTGCA 59.676 50.000 9.05 0.00 39.34 4.57
5969 8360 3.156157 AGCTCATCTGCTCTTGTGC 57.844 52.632 0.00 0.00 39.34 4.57
5986 8377 0.598680 CGGCTAAATGGCTCCGAGAG 60.599 60.000 0.00 0.00 44.23 3.20
5987 8378 1.441729 CGGCTAAATGGCTCCGAGA 59.558 57.895 0.00 0.00 44.23 4.04
5988 8379 2.247437 GCGGCTAAATGGCTCCGAG 61.247 63.158 3.51 0.00 44.23 4.63
5989 8380 2.203015 GCGGCTAAATGGCTCCGA 60.203 61.111 3.51 0.00 44.23 4.55
5990 8381 2.203070 AGCGGCTAAATGGCTCCG 60.203 61.111 0.00 0.00 44.29 4.63
5991 8382 3.737824 GAGCGGCTAAATGGCTCC 58.262 61.111 0.60 0.00 45.67 4.70
5993 8384 0.179062 CTGAGAGCGGCTAAATGGCT 60.179 55.000 0.60 0.00 40.29 4.75
5994 8385 0.179073 TCTGAGAGCGGCTAAATGGC 60.179 55.000 0.60 0.00 37.94 4.40
5995 8386 2.315925 TTCTGAGAGCGGCTAAATGG 57.684 50.000 0.60 0.00 0.00 3.16
5996 8387 2.029728 CGTTTCTGAGAGCGGCTAAATG 59.970 50.000 0.60 1.06 0.00 2.32
5997 8388 2.094182 TCGTTTCTGAGAGCGGCTAAAT 60.094 45.455 0.60 0.00 0.00 1.40
5998 8389 1.271379 TCGTTTCTGAGAGCGGCTAAA 59.729 47.619 0.60 0.00 0.00 1.85
5999 8390 0.885879 TCGTTTCTGAGAGCGGCTAA 59.114 50.000 0.60 0.00 0.00 3.09
6000 8391 0.885879 TTCGTTTCTGAGAGCGGCTA 59.114 50.000 0.60 0.00 0.00 3.93
6001 8392 0.033504 TTTCGTTTCTGAGAGCGGCT 59.966 50.000 0.00 0.00 0.00 5.52
6002 8393 0.440371 CTTTCGTTTCTGAGAGCGGC 59.560 55.000 8.24 0.00 0.00 6.53
6003 8394 1.071605 CCTTTCGTTTCTGAGAGCGG 58.928 55.000 8.24 0.00 0.00 5.52
6004 8395 2.065993 TCCTTTCGTTTCTGAGAGCG 57.934 50.000 2.80 2.80 0.00 5.03
6005 8396 3.589988 TGATCCTTTCGTTTCTGAGAGC 58.410 45.455 0.00 0.00 0.00 4.09
6006 8397 5.871524 TGAATGATCCTTTCGTTTCTGAGAG 59.128 40.000 0.00 0.00 33.61 3.20
6007 8398 5.793817 TGAATGATCCTTTCGTTTCTGAGA 58.206 37.500 0.00 0.00 33.61 3.27
6008 8399 5.447010 GCTGAATGATCCTTTCGTTTCTGAG 60.447 44.000 0.00 0.00 33.61 3.35
6009 8400 4.393062 GCTGAATGATCCTTTCGTTTCTGA 59.607 41.667 0.00 0.00 33.61 3.27
6010 8401 4.656041 GCTGAATGATCCTTTCGTTTCTG 58.344 43.478 0.00 0.00 33.61 3.02
6011 8402 3.372206 CGCTGAATGATCCTTTCGTTTCT 59.628 43.478 0.00 0.00 33.61 2.52
6012 8403 3.125316 ACGCTGAATGATCCTTTCGTTTC 59.875 43.478 0.00 0.00 33.61 2.78
6020 8411 4.547859 GGCACGCTGAATGATCCT 57.452 55.556 0.00 0.00 0.00 3.24
6045 8436 3.470888 AAGGACGGAGGATGGCGG 61.471 66.667 0.00 0.00 0.00 6.13
6062 8453 1.003118 CTGGACGGGAATCCTTTGTCA 59.997 52.381 16.93 6.86 39.75 3.58
6063 8454 1.739067 CTGGACGGGAATCCTTTGTC 58.261 55.000 0.00 5.36 39.75 3.18
6064 8455 0.322546 GCTGGACGGGAATCCTTTGT 60.323 55.000 0.00 0.00 39.75 2.83
6065 8456 1.032114 GGCTGGACGGGAATCCTTTG 61.032 60.000 0.00 0.00 39.75 2.77
6066 8457 1.303282 GGCTGGACGGGAATCCTTT 59.697 57.895 0.00 0.00 39.75 3.11
6067 8458 1.281925 ATGGCTGGACGGGAATCCTT 61.282 55.000 0.00 0.00 39.75 3.36
6068 8459 1.694169 ATGGCTGGACGGGAATCCT 60.694 57.895 0.00 0.00 39.75 3.24
6069 8460 1.526917 CATGGCTGGACGGGAATCC 60.527 63.158 0.00 0.00 39.45 3.01
6070 8461 2.189499 GCATGGCTGGACGGGAATC 61.189 63.158 0.00 0.00 0.00 2.52
6071 8462 2.124151 GCATGGCTGGACGGGAAT 60.124 61.111 0.00 0.00 0.00 3.01
6072 8463 3.329889 AGCATGGCTGGACGGGAA 61.330 61.111 0.00 0.00 37.57 3.97
6085 8476 1.681166 GCCTCTCCAACATGACAGCAT 60.681 52.381 0.00 0.00 34.29 3.79
6086 8477 0.321919 GCCTCTCCAACATGACAGCA 60.322 55.000 0.00 0.00 0.00 4.41
6087 8478 1.028868 GGCCTCTCCAACATGACAGC 61.029 60.000 0.00 0.00 34.01 4.40
6088 8479 0.742281 CGGCCTCTCCAACATGACAG 60.742 60.000 0.00 0.00 34.01 3.51
6089 8480 1.296392 CGGCCTCTCCAACATGACA 59.704 57.895 0.00 0.00 34.01 3.58
6090 8481 0.741221 GACGGCCTCTCCAACATGAC 60.741 60.000 0.00 0.00 34.01 3.06
6091 8482 1.191489 TGACGGCCTCTCCAACATGA 61.191 55.000 0.00 0.00 34.01 3.07
6092 8483 1.021390 GTGACGGCCTCTCCAACATG 61.021 60.000 0.00 0.00 34.01 3.21
6093 8484 1.296715 GTGACGGCCTCTCCAACAT 59.703 57.895 0.00 0.00 34.01 2.71
6094 8485 2.741092 GTGACGGCCTCTCCAACA 59.259 61.111 0.00 0.00 34.01 3.33
6095 8486 2.432628 CGTGACGGCCTCTCCAAC 60.433 66.667 0.00 0.00 34.01 3.77
6096 8487 3.691342 CCGTGACGGCCTCTCCAA 61.691 66.667 12.53 0.00 41.17 3.53
6107 8498 4.430423 CAGAAAGCGCGCCGTGAC 62.430 66.667 30.33 14.98 0.00 3.67
6108 8499 4.656117 TCAGAAAGCGCGCCGTGA 62.656 61.111 30.33 21.66 0.00 4.35
6109 8500 3.635734 CTTCAGAAAGCGCGCCGTG 62.636 63.158 30.33 19.63 0.00 4.94
6110 8501 3.414700 CTTCAGAAAGCGCGCCGT 61.415 61.111 30.33 16.89 0.00 5.68
6111 8502 4.152625 CCTTCAGAAAGCGCGCCG 62.153 66.667 30.33 11.69 0.00 6.46
6112 8503 2.617274 AACCTTCAGAAAGCGCGCC 61.617 57.895 30.33 13.31 0.00 6.53
6113 8504 1.441016 CAACCTTCAGAAAGCGCGC 60.441 57.895 26.66 26.66 0.00 6.86
6114 8505 1.207593 CCAACCTTCAGAAAGCGCG 59.792 57.895 0.00 0.00 0.00 6.86
6115 8506 0.238553 GTCCAACCTTCAGAAAGCGC 59.761 55.000 0.00 0.00 0.00 5.92
6116 8507 0.875059 GGTCCAACCTTCAGAAAGCG 59.125 55.000 0.00 0.00 34.73 4.68
6117 8508 0.875059 CGGTCCAACCTTCAGAAAGC 59.125 55.000 0.00 0.00 35.66 3.51
6118 8509 1.523758 CCGGTCCAACCTTCAGAAAG 58.476 55.000 0.00 0.00 35.66 2.62
6131 8522 2.081462 CATTTTCTGTACACCCGGTCC 58.919 52.381 0.00 0.00 0.00 4.46
6136 8527 4.759693 TCATGTGTCATTTTCTGTACACCC 59.240 41.667 0.00 0.00 41.17 4.61
6137 8528 5.470098 ACTCATGTGTCATTTTCTGTACACC 59.530 40.000 0.00 0.00 41.17 4.16
6138 8529 6.545504 ACTCATGTGTCATTTTCTGTACAC 57.454 37.500 0.00 0.00 42.00 2.90
6143 8534 7.800380 GTGAACTTACTCATGTGTCATTTTCTG 59.200 37.037 3.19 0.00 0.00 3.02
6147 8538 5.758296 ACGTGAACTTACTCATGTGTCATTT 59.242 36.000 3.19 0.00 42.63 2.32
6155 8546 5.515626 GCCTACTAACGTGAACTTACTCATG 59.484 44.000 0.00 0.00 38.16 3.07
6220 8611 3.415212 CTGCCTCCATTTTTCAGACTCA 58.585 45.455 0.00 0.00 0.00 3.41
6236 8629 0.533755 GATTATGGTCGCTGCTGCCT 60.534 55.000 10.24 0.00 35.36 4.75
6237 8630 1.510480 GGATTATGGTCGCTGCTGCC 61.510 60.000 10.24 0.00 35.36 4.85
6244 8637 2.489971 TCGGAAATGGATTATGGTCGC 58.510 47.619 0.00 0.00 0.00 5.19
6257 8651 3.643792 CTCTTCTGGTAGGGATCGGAAAT 59.356 47.826 0.00 0.00 30.42 2.17
6258 8652 3.031736 CTCTTCTGGTAGGGATCGGAAA 58.968 50.000 0.00 0.00 30.42 3.13
6281 8675 8.711170 TGGCCTATAAAGTAGTAGTTTTATGCT 58.289 33.333 3.32 0.00 33.06 3.79
6282 8676 8.897872 TGGCCTATAAAGTAGTAGTTTTATGC 57.102 34.615 3.32 8.82 33.06 3.14
6283 8677 9.490379 CCTGGCCTATAAAGTAGTAGTTTTATG 57.510 37.037 3.32 0.29 33.06 1.90
6284 8678 8.657712 CCCTGGCCTATAAAGTAGTAGTTTTAT 58.342 37.037 3.32 6.56 34.71 1.40
6285 8679 7.624879 ACCCTGGCCTATAAAGTAGTAGTTTTA 59.375 37.037 3.32 0.00 0.00 1.52
6286 8680 6.446110 ACCCTGGCCTATAAAGTAGTAGTTTT 59.554 38.462 3.32 0.00 0.00 2.43
6287 8681 5.968784 ACCCTGGCCTATAAAGTAGTAGTTT 59.031 40.000 3.32 8.04 0.00 2.66
6288 8682 5.535990 ACCCTGGCCTATAAAGTAGTAGTT 58.464 41.667 3.32 0.00 0.00 2.24
6289 8683 5.153670 ACCCTGGCCTATAAAGTAGTAGT 57.846 43.478 3.32 0.00 0.00 2.73
6290 8684 7.793948 ATAACCCTGGCCTATAAAGTAGTAG 57.206 40.000 3.32 0.00 0.00 2.57
6291 8685 9.673283 TTTATAACCCTGGCCTATAAAGTAGTA 57.327 33.333 3.32 0.00 0.00 1.82
6292 8686 8.571460 TTTATAACCCTGGCCTATAAAGTAGT 57.429 34.615 3.32 0.00 0.00 2.73
6293 8687 9.856162 TTTTTATAACCCTGGCCTATAAAGTAG 57.144 33.333 3.32 0.00 32.13 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.