Multiple sequence alignment - TraesCS5B01G495400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G495400 chr5B 100.000 2252 0 0 1 2252 662974421 662976672 0.000000e+00 4159.0
1 TraesCS5B01G495400 chr5B 100.000 293 0 0 1 293 356191101 356190809 1.970000e-150 542.0
2 TraesCS5B01G495400 chr5B 100.000 31 0 0 1798 1828 662976177 662976207 8.690000e-05 58.4
3 TraesCS5B01G495400 chr5B 100.000 31 0 0 1757 1787 662976218 662976248 8.690000e-05 58.4
4 TraesCS5B01G495400 chr5D 88.644 1585 107 34 293 1836 526905339 526906891 0.000000e+00 1862.0
5 TraesCS5B01G495400 chr5D 90.071 282 10 7 1971 2252 526907365 526907628 1.280000e-92 350.0
6 TraesCS5B01G495400 chr5A 88.569 1181 80 28 412 1555 654083526 654084688 0.000000e+00 1382.0
7 TraesCS5B01G495400 chr5A 100.000 293 0 0 1 293 534122789 534122497 1.970000e-150 542.0
8 TraesCS5B01G495400 chr4B 91.566 581 28 9 1175 1746 68885176 68884608 0.000000e+00 782.0
9 TraesCS5B01G495400 chr4B 90.278 288 26 2 1 287 659699082 659698796 2.110000e-100 375.0
10 TraesCS5B01G495400 chr2B 91.394 581 30 8 1175 1746 66788610 66788041 0.000000e+00 778.0
11 TraesCS5B01G495400 chr2B 90.000 290 27 2 1 289 526409641 526409929 7.590000e-100 374.0
12 TraesCS5B01G495400 chr7B 91.222 581 31 8 1175 1746 598352195 598351626 0.000000e+00 773.0
13 TraesCS5B01G495400 chr7B 90.378 291 26 2 1 290 504236643 504236932 4.540000e-102 381.0
14 TraesCS5B01G495400 chr6B 91.050 581 32 8 1175 1746 63966742 63967311 0.000000e+00 767.0
15 TraesCS5B01G495400 chr4A 91.034 580 34 8 1175 1746 737126830 737126261 0.000000e+00 767.0
16 TraesCS5B01G495400 chr1B 91.050 581 32 8 1175 1746 89402339 89402908 0.000000e+00 767.0
17 TraesCS5B01G495400 chr1B 91.050 581 32 8 1175 1746 594688436 594687867 0.000000e+00 767.0
18 TraesCS5B01G495400 chr3B 100.000 293 0 0 1 293 760381225 760381517 1.970000e-150 542.0
19 TraesCS5B01G495400 chr2D 100.000 293 0 0 1 293 490469273 490469565 1.970000e-150 542.0
20 TraesCS5B01G495400 chr4D 100.000 292 0 0 1 292 382741435 382741144 7.080000e-150 540.0
21 TraesCS5B01G495400 chr2A 100.000 256 0 0 37 292 642716005 642715750 7.280000e-130 473.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G495400 chr5B 662974421 662976672 2251 False 1425.266667 4159 100.0000 1 2252 3 chr5B.!!$F1 2251
1 TraesCS5B01G495400 chr5D 526905339 526907628 2289 False 1106.000000 1862 89.3575 293 2252 2 chr5D.!!$F1 1959
2 TraesCS5B01G495400 chr5A 654083526 654084688 1162 False 1382.000000 1382 88.5690 412 1555 1 chr5A.!!$F1 1143
3 TraesCS5B01G495400 chr4B 68884608 68885176 568 True 782.000000 782 91.5660 1175 1746 1 chr4B.!!$R1 571
4 TraesCS5B01G495400 chr2B 66788041 66788610 569 True 778.000000 778 91.3940 1175 1746 1 chr2B.!!$R1 571
5 TraesCS5B01G495400 chr7B 598351626 598352195 569 True 773.000000 773 91.2220 1175 1746 1 chr7B.!!$R1 571
6 TraesCS5B01G495400 chr6B 63966742 63967311 569 False 767.000000 767 91.0500 1175 1746 1 chr6B.!!$F1 571
7 TraesCS5B01G495400 chr4A 737126261 737126830 569 True 767.000000 767 91.0340 1175 1746 1 chr4A.!!$R1 571
8 TraesCS5B01G495400 chr1B 89402339 89402908 569 False 767.000000 767 91.0500 1175 1746 1 chr1B.!!$F1 571
9 TraesCS5B01G495400 chr1B 594687867 594688436 569 True 767.000000 767 91.0500 1175 1746 1 chr1B.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 498 0.0293 CGGTGTGCAGTGGTTTTCAG 59.971 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2401 0.164432 GCCGTGTACGCTGGTTAAAC 59.836 55.0 15.43 0.0 38.18 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.787473 TCCCTGACTATGCTTGTTGG 57.213 50.000 0.00 0.00 0.00 3.77
20 21 1.985159 TCCCTGACTATGCTTGTTGGT 59.015 47.619 0.00 0.00 0.00 3.67
21 22 2.375174 TCCCTGACTATGCTTGTTGGTT 59.625 45.455 0.00 0.00 0.00 3.67
22 23 2.489329 CCCTGACTATGCTTGTTGGTTG 59.511 50.000 0.00 0.00 0.00 3.77
23 24 2.489329 CCTGACTATGCTTGTTGGTTGG 59.511 50.000 0.00 0.00 0.00 3.77
24 25 2.489329 CTGACTATGCTTGTTGGTTGGG 59.511 50.000 0.00 0.00 0.00 4.12
25 26 2.158534 TGACTATGCTTGTTGGTTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
26 27 2.488153 GACTATGCTTGTTGGTTGGGTC 59.512 50.000 0.00 0.00 0.00 4.46
27 28 2.158534 ACTATGCTTGTTGGTTGGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
28 29 2.014010 ATGCTTGTTGGTTGGGTCAT 57.986 45.000 0.00 0.00 0.00 3.06
29 30 1.786937 TGCTTGTTGGTTGGGTCATT 58.213 45.000 0.00 0.00 0.00 2.57
30 31 2.114616 TGCTTGTTGGTTGGGTCATTT 58.885 42.857 0.00 0.00 0.00 2.32
31 32 2.158986 TGCTTGTTGGTTGGGTCATTTG 60.159 45.455 0.00 0.00 0.00 2.32
32 33 2.806382 GCTTGTTGGTTGGGTCATTTGG 60.806 50.000 0.00 0.00 0.00 3.28
33 34 2.461300 TGTTGGTTGGGTCATTTGGA 57.539 45.000 0.00 0.00 0.00 3.53
34 35 2.752030 TGTTGGTTGGGTCATTTGGAA 58.248 42.857 0.00 0.00 0.00 3.53
35 36 2.432510 TGTTGGTTGGGTCATTTGGAAC 59.567 45.455 0.00 0.00 0.00 3.62
36 37 1.323412 TGGTTGGGTCATTTGGAACG 58.677 50.000 0.00 0.00 32.36 3.95
37 38 1.133761 TGGTTGGGTCATTTGGAACGA 60.134 47.619 0.00 0.00 32.36 3.85
38 39 1.539827 GGTTGGGTCATTTGGAACGAG 59.460 52.381 0.00 0.00 32.36 4.18
39 40 2.500229 GTTGGGTCATTTGGAACGAGA 58.500 47.619 0.00 0.00 32.36 4.04
40 41 2.472695 TGGGTCATTTGGAACGAGAG 57.527 50.000 0.00 0.00 32.36 3.20
41 42 1.974957 TGGGTCATTTGGAACGAGAGA 59.025 47.619 0.00 0.00 32.36 3.10
42 43 2.370519 TGGGTCATTTGGAACGAGAGAA 59.629 45.455 0.00 0.00 32.36 2.87
43 44 3.181449 TGGGTCATTTGGAACGAGAGAAA 60.181 43.478 0.00 0.00 32.36 2.52
44 45 3.188667 GGGTCATTTGGAACGAGAGAAAC 59.811 47.826 0.00 0.00 32.36 2.78
45 46 3.813166 GGTCATTTGGAACGAGAGAAACA 59.187 43.478 0.00 0.00 0.00 2.83
46 47 4.319549 GGTCATTTGGAACGAGAGAAACAC 60.320 45.833 0.00 0.00 0.00 3.32
47 48 4.511826 GTCATTTGGAACGAGAGAAACACT 59.488 41.667 0.00 0.00 0.00 3.55
48 49 5.694910 GTCATTTGGAACGAGAGAAACACTA 59.305 40.000 0.00 0.00 0.00 2.74
49 50 5.926542 TCATTTGGAACGAGAGAAACACTAG 59.073 40.000 0.00 0.00 0.00 2.57
50 51 5.524971 TTTGGAACGAGAGAAACACTAGA 57.475 39.130 0.00 0.00 0.00 2.43
51 52 4.768130 TGGAACGAGAGAAACACTAGAG 57.232 45.455 0.00 0.00 0.00 2.43
52 53 4.142790 TGGAACGAGAGAAACACTAGAGT 58.857 43.478 0.00 0.00 0.00 3.24
53 54 4.583489 TGGAACGAGAGAAACACTAGAGTT 59.417 41.667 0.00 0.00 0.00 3.01
54 55 5.068723 TGGAACGAGAGAAACACTAGAGTTT 59.931 40.000 16.81 16.81 43.90 2.66
55 56 5.984323 GGAACGAGAGAAACACTAGAGTTTT 59.016 40.000 17.68 9.18 41.48 2.43
56 57 6.144241 GGAACGAGAGAAACACTAGAGTTTTC 59.856 42.308 17.68 15.62 41.48 2.29
57 58 6.145338 ACGAGAGAAACACTAGAGTTTTCA 57.855 37.500 17.68 0.00 41.48 2.69
58 59 6.210078 ACGAGAGAAACACTAGAGTTTTCAG 58.790 40.000 17.68 15.20 41.48 3.02
59 60 5.631512 CGAGAGAAACACTAGAGTTTTCAGG 59.368 44.000 17.68 9.95 41.48 3.86
60 61 6.515200 CGAGAGAAACACTAGAGTTTTCAGGA 60.515 42.308 17.68 0.00 41.48 3.86
61 62 7.125792 AGAGAAACACTAGAGTTTTCAGGAA 57.874 36.000 17.68 0.00 41.48 3.36
62 63 7.213678 AGAGAAACACTAGAGTTTTCAGGAAG 58.786 38.462 17.68 0.00 41.48 3.46
63 64 7.070074 AGAGAAACACTAGAGTTTTCAGGAAGA 59.930 37.037 17.68 0.00 41.48 2.87
64 65 7.565680 AGAAACACTAGAGTTTTCAGGAAGAA 58.434 34.615 17.68 0.00 41.48 2.52
65 66 8.047310 AGAAACACTAGAGTTTTCAGGAAGAAA 58.953 33.333 17.68 0.00 44.21 2.52
66 67 8.753497 AAACACTAGAGTTTTCAGGAAGAAAT 57.247 30.769 11.92 0.00 45.15 2.17
67 68 7.971183 ACACTAGAGTTTTCAGGAAGAAATC 57.029 36.000 0.00 0.00 45.15 2.17
68 69 7.509546 ACACTAGAGTTTTCAGGAAGAAATCA 58.490 34.615 0.00 0.00 45.15 2.57
69 70 7.993183 ACACTAGAGTTTTCAGGAAGAAATCAA 59.007 33.333 0.00 0.00 45.15 2.57
70 71 8.286097 CACTAGAGTTTTCAGGAAGAAATCAAC 58.714 37.037 0.00 0.00 45.15 3.18
71 72 6.305693 AGAGTTTTCAGGAAGAAATCAACG 57.694 37.500 0.00 0.00 45.15 4.10
72 73 4.860072 AGTTTTCAGGAAGAAATCAACGC 58.140 39.130 0.00 0.00 45.15 4.84
73 74 3.915437 TTTCAGGAAGAAATCAACGCC 57.085 42.857 0.00 0.00 41.17 5.68
74 75 1.438651 TCAGGAAGAAATCAACGCCG 58.561 50.000 0.00 0.00 0.00 6.46
75 76 0.179189 CAGGAAGAAATCAACGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
76 77 1.136774 GGAAGAAATCAACGCCGCC 59.863 57.895 0.00 0.00 0.00 6.13
77 78 1.136774 GAAGAAATCAACGCCGCCC 59.863 57.895 0.00 0.00 0.00 6.13
78 79 1.303317 AAGAAATCAACGCCGCCCT 60.303 52.632 0.00 0.00 0.00 5.19
79 80 0.893727 AAGAAATCAACGCCGCCCTT 60.894 50.000 0.00 0.00 0.00 3.95
80 81 1.136774 GAAATCAACGCCGCCCTTC 59.863 57.895 0.00 0.00 0.00 3.46
81 82 1.303317 AAATCAACGCCGCCCTTCT 60.303 52.632 0.00 0.00 0.00 2.85
82 83 0.035820 AAATCAACGCCGCCCTTCTA 60.036 50.000 0.00 0.00 0.00 2.10
83 84 0.743345 AATCAACGCCGCCCTTCTAC 60.743 55.000 0.00 0.00 0.00 2.59
84 85 1.895020 ATCAACGCCGCCCTTCTACA 61.895 55.000 0.00 0.00 0.00 2.74
85 86 1.449601 CAACGCCGCCCTTCTACAT 60.450 57.895 0.00 0.00 0.00 2.29
86 87 1.024579 CAACGCCGCCCTTCTACATT 61.025 55.000 0.00 0.00 0.00 2.71
87 88 0.743345 AACGCCGCCCTTCTACATTC 60.743 55.000 0.00 0.00 0.00 2.67
88 89 1.144057 CGCCGCCCTTCTACATTCT 59.856 57.895 0.00 0.00 0.00 2.40
89 90 0.387929 CGCCGCCCTTCTACATTCTA 59.612 55.000 0.00 0.00 0.00 2.10
90 91 1.202486 CGCCGCCCTTCTACATTCTAA 60.202 52.381 0.00 0.00 0.00 2.10
91 92 2.740580 CGCCGCCCTTCTACATTCTAAA 60.741 50.000 0.00 0.00 0.00 1.85
92 93 3.275999 GCCGCCCTTCTACATTCTAAAA 58.724 45.455 0.00 0.00 0.00 1.52
93 94 3.064958 GCCGCCCTTCTACATTCTAAAAC 59.935 47.826 0.00 0.00 0.00 2.43
94 95 4.514401 CCGCCCTTCTACATTCTAAAACT 58.486 43.478 0.00 0.00 0.00 2.66
95 96 4.941873 CCGCCCTTCTACATTCTAAAACTT 59.058 41.667 0.00 0.00 0.00 2.66
96 97 6.110707 CCGCCCTTCTACATTCTAAAACTTA 58.889 40.000 0.00 0.00 0.00 2.24
97 98 6.766467 CCGCCCTTCTACATTCTAAAACTTAT 59.234 38.462 0.00 0.00 0.00 1.73
98 99 7.041984 CCGCCCTTCTACATTCTAAAACTTATC 60.042 40.741 0.00 0.00 0.00 1.75
99 100 7.041984 CGCCCTTCTACATTCTAAAACTTATCC 60.042 40.741 0.00 0.00 0.00 2.59
100 101 7.773690 GCCCTTCTACATTCTAAAACTTATCCA 59.226 37.037 0.00 0.00 0.00 3.41
101 102 9.681062 CCCTTCTACATTCTAAAACTTATCCAA 57.319 33.333 0.00 0.00 0.00 3.53
109 110 9.727627 CATTCTAAAACTTATCCAAGATGAAGC 57.272 33.333 0.00 0.00 35.60 3.86
110 111 7.539712 TCTAAAACTTATCCAAGATGAAGCG 57.460 36.000 0.00 0.00 35.60 4.68
111 112 7.327975 TCTAAAACTTATCCAAGATGAAGCGA 58.672 34.615 0.00 0.00 35.60 4.93
112 113 6.817765 AAAACTTATCCAAGATGAAGCGAA 57.182 33.333 0.00 0.00 35.60 4.70
113 114 6.428385 AAACTTATCCAAGATGAAGCGAAG 57.572 37.500 0.00 0.00 35.60 3.79
114 115 3.873952 ACTTATCCAAGATGAAGCGAAGC 59.126 43.478 0.00 0.00 44.72 3.86
126 127 3.253955 CGAAGCTTTGGGTCACGG 58.746 61.111 5.72 0.00 0.00 4.94
127 128 2.954611 GAAGCTTTGGGTCACGGC 59.045 61.111 0.00 0.00 0.00 5.68
128 129 2.966309 GAAGCTTTGGGTCACGGCG 61.966 63.158 4.80 4.80 0.00 6.46
131 132 4.323477 CTTTGGGTCACGGCGGGA 62.323 66.667 8.28 8.28 0.00 5.14
132 133 4.323477 TTTGGGTCACGGCGGGAG 62.323 66.667 14.43 0.00 0.00 4.30
146 147 1.686355 CGGGAGCTAGACATCTGAGT 58.314 55.000 0.00 0.00 0.00 3.41
147 148 2.852449 CGGGAGCTAGACATCTGAGTA 58.148 52.381 0.00 0.00 0.00 2.59
148 149 3.417101 CGGGAGCTAGACATCTGAGTAT 58.583 50.000 0.00 0.00 0.00 2.12
149 150 3.438781 CGGGAGCTAGACATCTGAGTATC 59.561 52.174 0.00 0.00 0.00 2.24
160 161 3.199764 TGAGTATCATCATGCCGCG 57.800 52.632 0.00 0.00 42.56 6.46
161 162 0.673437 TGAGTATCATCATGCCGCGA 59.327 50.000 8.23 0.00 42.56 5.87
162 163 1.336240 TGAGTATCATCATGCCGCGAG 60.336 52.381 8.23 0.00 42.56 5.03
163 164 0.961753 AGTATCATCATGCCGCGAGA 59.038 50.000 8.23 0.00 0.00 4.04
164 165 1.067985 AGTATCATCATGCCGCGAGAG 60.068 52.381 8.23 0.00 0.00 3.20
165 166 0.961753 TATCATCATGCCGCGAGAGT 59.038 50.000 8.23 0.00 0.00 3.24
166 167 0.961753 ATCATCATGCCGCGAGAGTA 59.038 50.000 8.23 0.00 0.00 2.59
167 168 0.312102 TCATCATGCCGCGAGAGTAG 59.688 55.000 8.23 0.00 0.00 2.57
168 169 1.006805 ATCATGCCGCGAGAGTAGC 60.007 57.895 8.23 0.58 0.00 3.58
169 170 1.459455 ATCATGCCGCGAGAGTAGCT 61.459 55.000 8.23 0.00 33.31 3.32
170 171 0.818040 TCATGCCGCGAGAGTAGCTA 60.818 55.000 8.23 0.00 33.31 3.32
171 172 0.661780 CATGCCGCGAGAGTAGCTAC 60.662 60.000 16.43 16.43 33.31 3.58
172 173 0.820074 ATGCCGCGAGAGTAGCTACT 60.820 55.000 26.35 26.35 39.71 2.57
173 174 1.009449 GCCGCGAGAGTAGCTACTG 60.009 63.158 30.70 17.18 36.50 2.74
174 175 1.009449 CCGCGAGAGTAGCTACTGC 60.009 63.158 30.70 24.37 36.50 4.40
189 190 3.968724 GCTACTGCTTTCTTTTGTTGTCG 59.031 43.478 0.00 0.00 36.03 4.35
190 191 3.420839 ACTGCTTTCTTTTGTTGTCGG 57.579 42.857 0.00 0.00 0.00 4.79
191 192 3.013921 ACTGCTTTCTTTTGTTGTCGGA 58.986 40.909 0.00 0.00 0.00 4.55
192 193 3.181500 ACTGCTTTCTTTTGTTGTCGGAC 60.181 43.478 0.00 0.00 0.00 4.79
193 194 2.223157 TGCTTTCTTTTGTTGTCGGACG 60.223 45.455 3.34 0.00 0.00 4.79
194 195 2.853281 GCTTTCTTTTGTTGTCGGACGG 60.853 50.000 3.34 0.00 0.00 4.79
195 196 1.301423 TTCTTTTGTTGTCGGACGGG 58.699 50.000 3.34 0.00 0.00 5.28
196 197 1.161563 TCTTTTGTTGTCGGACGGGC 61.162 55.000 3.34 0.00 0.00 6.13
197 198 1.153127 TTTTGTTGTCGGACGGGCT 60.153 52.632 3.34 0.00 0.00 5.19
198 199 0.106335 TTTTGTTGTCGGACGGGCTA 59.894 50.000 3.34 0.00 0.00 3.93
199 200 0.322322 TTTGTTGTCGGACGGGCTAT 59.678 50.000 3.34 0.00 0.00 2.97
200 201 0.390603 TTGTTGTCGGACGGGCTATG 60.391 55.000 3.34 0.00 0.00 2.23
201 202 1.252215 TGTTGTCGGACGGGCTATGA 61.252 55.000 3.34 0.00 0.00 2.15
202 203 0.104304 GTTGTCGGACGGGCTATGAT 59.896 55.000 3.34 0.00 0.00 2.45
203 204 0.104120 TTGTCGGACGGGCTATGATG 59.896 55.000 3.34 0.00 0.00 3.07
204 205 1.040893 TGTCGGACGGGCTATGATGT 61.041 55.000 3.34 0.00 0.00 3.06
205 206 0.597637 GTCGGACGGGCTATGATGTG 60.598 60.000 0.00 0.00 0.00 3.21
206 207 0.753848 TCGGACGGGCTATGATGTGA 60.754 55.000 0.00 0.00 0.00 3.58
207 208 0.104120 CGGACGGGCTATGATGTGAA 59.896 55.000 0.00 0.00 0.00 3.18
208 209 1.869754 CGGACGGGCTATGATGTGAAG 60.870 57.143 0.00 0.00 0.00 3.02
209 210 1.221414 GACGGGCTATGATGTGAAGC 58.779 55.000 0.00 0.00 35.47 3.86
218 219 6.564709 GCTATGATGTGAAGCCATTAATCA 57.435 37.500 0.00 0.00 0.00 2.57
219 220 7.154435 GCTATGATGTGAAGCCATTAATCAT 57.846 36.000 0.00 0.00 35.85 2.45
220 221 7.027760 GCTATGATGTGAAGCCATTAATCATG 58.972 38.462 10.45 0.00 34.70 3.07
221 222 6.971726 ATGATGTGAAGCCATTAATCATGT 57.028 33.333 0.00 0.00 33.16 3.21
222 223 9.223099 CTATGATGTGAAGCCATTAATCATGTA 57.777 33.333 10.45 0.00 34.70 2.29
223 224 7.263100 TGATGTGAAGCCATTAATCATGTAC 57.737 36.000 0.00 0.00 0.00 2.90
224 225 7.056006 TGATGTGAAGCCATTAATCATGTACT 58.944 34.615 0.00 0.00 0.00 2.73
225 226 6.925610 TGTGAAGCCATTAATCATGTACTC 57.074 37.500 0.00 0.00 0.00 2.59
226 227 6.653020 TGTGAAGCCATTAATCATGTACTCT 58.347 36.000 0.00 0.00 0.00 3.24
227 228 7.791029 TGTGAAGCCATTAATCATGTACTCTA 58.209 34.615 0.00 0.00 0.00 2.43
228 229 8.264347 TGTGAAGCCATTAATCATGTACTCTAA 58.736 33.333 0.00 0.00 0.00 2.10
229 230 9.109393 GTGAAGCCATTAATCATGTACTCTAAA 57.891 33.333 0.00 0.00 0.00 1.85
230 231 9.679661 TGAAGCCATTAATCATGTACTCTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
231 232 9.937175 GAAGCCATTAATCATGTACTCTAAAAC 57.063 33.333 0.00 0.00 0.00 2.43
232 233 9.686683 AAGCCATTAATCATGTACTCTAAAACT 57.313 29.630 0.00 0.00 0.00 2.66
233 234 9.331282 AGCCATTAATCATGTACTCTAAAACTC 57.669 33.333 0.00 0.00 0.00 3.01
234 235 9.331282 GCCATTAATCATGTACTCTAAAACTCT 57.669 33.333 0.00 0.00 0.00 3.24
240 241 8.602472 ATCATGTACTCTAAAACTCTTCTCCT 57.398 34.615 0.00 0.00 0.00 3.69
241 242 8.423906 TCATGTACTCTAAAACTCTTCTCCTT 57.576 34.615 0.00 0.00 0.00 3.36
242 243 8.871125 TCATGTACTCTAAAACTCTTCTCCTTT 58.129 33.333 0.00 0.00 0.00 3.11
256 257 9.844257 ACTCTTCTCCTTTATTAATGAATGAGG 57.156 33.333 18.65 7.47 33.86 3.86
257 258 8.682936 TCTTCTCCTTTATTAATGAATGAGGC 57.317 34.615 18.65 0.00 33.17 4.70
258 259 8.274322 TCTTCTCCTTTATTAATGAATGAGGCA 58.726 33.333 18.65 9.73 33.17 4.75
259 260 8.821686 TTCTCCTTTATTAATGAATGAGGCAA 57.178 30.769 18.65 9.03 33.17 4.52
260 261 8.821686 TCTCCTTTATTAATGAATGAGGCAAA 57.178 30.769 18.65 4.03 33.17 3.68
261 262 9.425248 TCTCCTTTATTAATGAATGAGGCAAAT 57.575 29.630 18.65 0.00 33.17 2.32
262 263 9.688592 CTCCTTTATTAATGAATGAGGCAAATC 57.311 33.333 13.93 0.00 33.17 2.17
263 264 9.425248 TCCTTTATTAATGAATGAGGCAAATCT 57.575 29.630 0.00 0.00 33.17 2.40
268 269 7.599630 TTAATGAATGAGGCAAATCTTTTGC 57.400 32.000 14.88 14.88 44.22 3.68
277 278 4.979564 GCAAATCTTTTGCCTCTGTTTC 57.020 40.909 12.74 0.00 39.38 2.78
278 279 4.370917 GCAAATCTTTTGCCTCTGTTTCA 58.629 39.130 12.74 0.00 39.38 2.69
279 280 4.810491 GCAAATCTTTTGCCTCTGTTTCAA 59.190 37.500 12.74 0.00 39.38 2.69
280 281 5.294060 GCAAATCTTTTGCCTCTGTTTCAAA 59.706 36.000 12.74 0.00 39.38 2.69
281 282 6.183360 GCAAATCTTTTGCCTCTGTTTCAAAA 60.183 34.615 12.74 0.00 39.38 2.44
282 283 7.626028 GCAAATCTTTTGCCTCTGTTTCAAAAA 60.626 33.333 12.74 0.00 38.65 1.94
341 342 2.194212 GCTCGCCTCGGATCCACTA 61.194 63.158 13.41 0.00 0.00 2.74
342 343 1.735376 GCTCGCCTCGGATCCACTAA 61.735 60.000 13.41 0.00 0.00 2.24
345 346 1.069935 GCCTCGGATCCACTAAGCC 59.930 63.158 13.41 0.00 0.00 4.35
363 364 4.400961 GCCCAGCTGCCTCGTCTT 62.401 66.667 8.66 0.00 0.00 3.01
369 370 2.621338 CAGCTGCCTCGTCTTAAATGA 58.379 47.619 0.00 0.00 0.00 2.57
372 373 2.223135 GCTGCCTCGTCTTAAATGAAGC 60.223 50.000 0.00 0.00 34.87 3.86
378 379 2.607635 TCGTCTTAAATGAAGCCGATGC 59.392 45.455 0.00 0.00 40.42 3.91
406 407 1.766069 GCCGACGCAAAGAACAAAAT 58.234 45.000 0.00 0.00 34.03 1.82
410 411 1.792367 GACGCAAAGAACAAAATGGGC 59.208 47.619 0.00 0.00 0.00 5.36
426 428 8.147058 ACAAAATGGGCATAAATATATTTCGCA 58.853 29.630 23.55 18.90 32.83 5.10
433 435 7.413438 GGGCATAAATATATTTCGCAGACAGAG 60.413 40.741 23.55 4.76 34.32 3.35
493 497 1.380403 CCGGTGTGCAGTGGTTTTCA 61.380 55.000 0.00 0.00 0.00 2.69
494 498 0.029300 CGGTGTGCAGTGGTTTTCAG 59.971 55.000 0.00 0.00 0.00 3.02
495 499 0.385390 GGTGTGCAGTGGTTTTCAGG 59.615 55.000 0.00 0.00 0.00 3.86
496 500 0.385390 GTGTGCAGTGGTTTTCAGGG 59.615 55.000 0.00 0.00 0.00 4.45
732 746 3.792736 GACAGCGGGGCCCACATA 61.793 66.667 26.86 0.00 0.00 2.29
766 780 1.805120 CGGTTCATGGCGTAGGTTAGG 60.805 57.143 0.00 0.00 0.00 2.69
817 839 0.896479 TGCCGCTGTACTCCACTACA 60.896 55.000 0.00 0.00 0.00 2.74
819 841 0.172803 CCGCTGTACTCCACTACACC 59.827 60.000 0.00 0.00 0.00 4.16
846 868 3.438087 GCTCGTACCGCTATATTACTCCA 59.562 47.826 0.00 0.00 0.00 3.86
847 869 4.671250 GCTCGTACCGCTATATTACTCCAC 60.671 50.000 0.00 0.00 0.00 4.02
849 871 3.425359 CGTACCGCTATATTACTCCACCG 60.425 52.174 0.00 0.00 0.00 4.94
942 964 2.558286 GCTGCTGCTGCTCAAACCA 61.558 57.895 22.10 0.00 40.48 3.67
948 970 1.136695 CTGCTGCTCAAACCAAAACCA 59.863 47.619 0.00 0.00 0.00 3.67
955 977 1.134551 TCAAACCAAAACCAGCTTGGC 60.135 47.619 1.10 0.00 46.20 4.52
961 983 0.185901 AAAACCAGCTTGGCAGGAGA 59.814 50.000 0.00 0.00 42.67 3.71
962 984 0.185901 AAACCAGCTTGGCAGGAGAA 59.814 50.000 0.00 0.00 42.67 2.87
963 985 0.251077 AACCAGCTTGGCAGGAGAAG 60.251 55.000 0.00 0.00 42.67 2.85
964 986 1.378250 CCAGCTTGGCAGGAGAAGG 60.378 63.158 0.00 0.00 37.40 3.46
965 987 1.377994 CAGCTTGGCAGGAGAAGGT 59.622 57.895 0.00 0.00 0.00 3.50
966 988 0.615331 CAGCTTGGCAGGAGAAGGTA 59.385 55.000 0.00 0.00 0.00 3.08
967 989 0.908198 AGCTTGGCAGGAGAAGGTAG 59.092 55.000 0.00 0.00 0.00 3.18
968 990 0.905357 GCTTGGCAGGAGAAGGTAGA 59.095 55.000 0.00 0.00 0.00 2.59
969 991 1.488393 GCTTGGCAGGAGAAGGTAGAT 59.512 52.381 0.00 0.00 0.00 1.98
972 994 3.689872 TGGCAGGAGAAGGTAGATAGT 57.310 47.619 0.00 0.00 0.00 2.12
974 996 2.894765 GGCAGGAGAAGGTAGATAGTCC 59.105 54.545 0.00 0.00 0.00 3.85
975 997 3.567397 GCAGGAGAAGGTAGATAGTCCA 58.433 50.000 0.00 0.00 0.00 4.02
976 998 3.572255 GCAGGAGAAGGTAGATAGTCCAG 59.428 52.174 0.00 0.00 0.00 3.86
1254 1283 1.666553 CTCCACCTGCGCGTAAACA 60.667 57.895 8.43 0.00 0.00 2.83
1255 1284 1.225376 CTCCACCTGCGCGTAAACAA 61.225 55.000 8.43 0.00 0.00 2.83
1256 1285 0.814410 TCCACCTGCGCGTAAACAAA 60.814 50.000 8.43 0.00 0.00 2.83
1257 1286 0.385473 CCACCTGCGCGTAAACAAAG 60.385 55.000 8.43 0.00 0.00 2.77
1258 1287 0.306533 CACCTGCGCGTAAACAAAGT 59.693 50.000 8.43 0.00 0.00 2.66
1273 1302 2.289945 ACAAAGTGATCCTCTGCAGACC 60.290 50.000 13.74 3.08 0.00 3.85
1313 1348 2.124560 AGGGAATAGCCACTAGCCAT 57.875 50.000 0.00 0.00 45.47 4.40
1317 1352 2.551071 GGAATAGCCACTAGCCATGGAC 60.551 54.545 18.40 7.03 45.47 4.02
1395 1432 2.811317 GCCTCAGTTCCTGACGCG 60.811 66.667 3.53 3.53 35.39 6.01
1403 1440 2.223144 CAGTTCCTGACGCGAAAAATGA 59.777 45.455 15.93 0.00 32.44 2.57
1532 1584 0.721718 GCCGTACAGAAGTGTGCATC 59.278 55.000 0.00 0.00 39.13 3.91
1594 1652 0.182775 ACTTGGCCTTTTGTCCGTCT 59.817 50.000 3.32 0.00 0.00 4.18
1595 1653 0.875059 CTTGGCCTTTTGTCCGTCTC 59.125 55.000 3.32 0.00 0.00 3.36
1597 1655 0.181587 TGGCCTTTTGTCCGTCTCAA 59.818 50.000 3.32 0.00 0.00 3.02
1598 1656 0.591659 GGCCTTTTGTCCGTCTCAAC 59.408 55.000 0.00 0.00 0.00 3.18
1702 1766 1.263776 GATCTCTGTCGACGCTTGTG 58.736 55.000 11.62 2.70 0.00 3.33
1703 1767 0.109086 ATCTCTGTCGACGCTTGTGG 60.109 55.000 11.62 0.00 0.00 4.17
1710 1774 2.946762 GACGCTTGTGGGTTGCTC 59.053 61.111 0.00 0.00 39.55 4.26
1731 1795 1.405872 CATGACCATGGGGGATGTTG 58.594 55.000 18.09 0.00 41.15 3.33
1797 1861 2.681152 AGATTGGTTCGACGTTTTGC 57.319 45.000 0.00 0.00 0.00 3.68
1798 1862 1.944024 AGATTGGTTCGACGTTTTGCA 59.056 42.857 0.00 0.00 0.00 4.08
1799 1863 2.356382 AGATTGGTTCGACGTTTTGCAA 59.644 40.909 0.00 0.00 0.00 4.08
1800 1864 2.631418 TTGGTTCGACGTTTTGCAAA 57.369 40.000 8.05 8.05 0.00 3.68
1801 1865 2.631418 TGGTTCGACGTTTTGCAAAA 57.369 40.000 20.46 20.46 0.00 2.44
1845 2123 4.585879 TGGTTTGAGATTTAGCAGGGTAC 58.414 43.478 0.00 0.00 0.00 3.34
1873 2151 0.038618 GGCAATCCGAAACACAACCC 60.039 55.000 0.00 0.00 0.00 4.11
1878 2163 4.376146 CAATCCGAAACACAACCCAAATT 58.624 39.130 0.00 0.00 0.00 1.82
1913 2198 3.178267 TCTAACGTTAATTGTACGGCCG 58.822 45.455 26.86 26.86 42.99 6.13
1915 2200 1.070038 ACGTTAATTGTACGGCCGTG 58.930 50.000 40.02 22.03 42.99 4.94
1916 2201 1.336702 ACGTTAATTGTACGGCCGTGA 60.337 47.619 40.02 25.14 42.99 4.35
1919 2204 3.551082 CGTTAATTGTACGGCCGTGATTA 59.449 43.478 40.02 31.42 35.47 1.75
1920 2205 4.317558 CGTTAATTGTACGGCCGTGATTAG 60.318 45.833 40.02 22.18 35.47 1.73
1926 2211 2.684001 ACGGCCGTGATTAGAAATGA 57.316 45.000 33.75 0.00 0.00 2.57
1934 2219 6.876257 GGCCGTGATTAGAAATGAATAGATCT 59.124 38.462 0.00 0.00 0.00 2.75
1936 2221 9.081997 GCCGTGATTAGAAATGAATAGATCTAG 57.918 37.037 8.70 0.00 0.00 2.43
1996 2401 6.404074 GGCATATTCTTCTCTCCTGTTTGTTG 60.404 42.308 0.00 0.00 0.00 3.33
1997 2402 6.150140 GCATATTCTTCTCTCCTGTTTGTTGT 59.850 38.462 0.00 0.00 0.00 3.32
1998 2403 7.308830 GCATATTCTTCTCTCCTGTTTGTTGTT 60.309 37.037 0.00 0.00 0.00 2.83
2006 2411 4.097286 TCTCCTGTTTGTTGTTTAACCAGC 59.903 41.667 0.00 0.00 35.92 4.85
2033 2438 1.063183 GCCCATAAGAGAGGAGGCAT 58.937 55.000 0.00 0.00 40.20 4.40
2037 2442 3.393941 CCCATAAGAGAGGAGGCATTTCT 59.606 47.826 0.00 0.00 0.00 2.52
2038 2443 4.594920 CCCATAAGAGAGGAGGCATTTCTA 59.405 45.833 0.00 0.00 0.00 2.10
2039 2444 5.279910 CCCATAAGAGAGGAGGCATTTCTAG 60.280 48.000 0.00 0.00 0.00 2.43
2040 2445 5.541868 CCATAAGAGAGGAGGCATTTCTAGA 59.458 44.000 0.00 0.00 0.00 2.43
2041 2446 6.213195 CCATAAGAGAGGAGGCATTTCTAGAT 59.787 42.308 0.00 0.00 0.00 1.98
2042 2447 7.398618 CCATAAGAGAGGAGGCATTTCTAGATA 59.601 40.741 0.00 0.00 0.00 1.98
2043 2448 8.811017 CATAAGAGAGGAGGCATTTCTAGATAA 58.189 37.037 0.00 0.00 0.00 1.75
2072 2477 0.600557 CCGAGGGCTGAGCTGTATAG 59.399 60.000 3.72 0.00 0.00 1.31
2089 2494 7.963532 GCTGTATAGCCTAATATAGCCCAATA 58.036 38.462 0.00 0.00 44.33 1.90
2120 2525 1.204704 GCCCAGTTATTCAAACAGGCC 59.795 52.381 0.00 0.00 36.46 5.19
2152 2557 2.202892 GATCACGGCCCGAAGACC 60.203 66.667 11.71 0.00 0.00 3.85
2161 2566 1.963464 GCCCGAAGACCCCGATACAA 61.963 60.000 0.00 0.00 0.00 2.41
2170 2575 2.681344 GACCCCGATACAATGACAAACC 59.319 50.000 0.00 0.00 0.00 3.27
2171 2576 2.307686 ACCCCGATACAATGACAAACCT 59.692 45.455 0.00 0.00 0.00 3.50
2176 2581 3.551890 CGATACAATGACAAACCTCGGAG 59.448 47.826 0.00 0.00 0.00 4.63
2207 2612 0.967887 CGCTTCTCCTCCTCACCTCA 60.968 60.000 0.00 0.00 0.00 3.86
2208 2613 0.534873 GCTTCTCCTCCTCACCTCAC 59.465 60.000 0.00 0.00 0.00 3.51
2209 2614 1.190643 CTTCTCCTCCTCACCTCACC 58.809 60.000 0.00 0.00 0.00 4.02
2210 2615 0.787084 TTCTCCTCCTCACCTCACCT 59.213 55.000 0.00 0.00 0.00 4.00
2211 2616 0.333312 TCTCCTCCTCACCTCACCTC 59.667 60.000 0.00 0.00 0.00 3.85
2243 2648 1.752198 CAGGTTCCGGAACACTCCA 59.248 57.895 40.12 7.72 42.58 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.985159 ACCAACAAGCATAGTCAGGGA 59.015 47.619 0.00 0.00 0.00 4.20
1 2 2.489329 CAACCAACAAGCATAGTCAGGG 59.511 50.000 0.00 0.00 0.00 4.45
2 3 2.489329 CCAACCAACAAGCATAGTCAGG 59.511 50.000 0.00 0.00 0.00 3.86
3 4 2.489329 CCCAACCAACAAGCATAGTCAG 59.511 50.000 0.00 0.00 0.00 3.51
4 5 2.158534 ACCCAACCAACAAGCATAGTCA 60.159 45.455 0.00 0.00 0.00 3.41
5 6 2.488153 GACCCAACCAACAAGCATAGTC 59.512 50.000 0.00 0.00 0.00 2.59
6 7 2.158534 TGACCCAACCAACAAGCATAGT 60.159 45.455 0.00 0.00 0.00 2.12
7 8 2.513753 TGACCCAACCAACAAGCATAG 58.486 47.619 0.00 0.00 0.00 2.23
8 9 2.666272 TGACCCAACCAACAAGCATA 57.334 45.000 0.00 0.00 0.00 3.14
9 10 2.014010 ATGACCCAACCAACAAGCAT 57.986 45.000 0.00 0.00 0.00 3.79
10 11 1.786937 AATGACCCAACCAACAAGCA 58.213 45.000 0.00 0.00 0.00 3.91
11 12 2.482864 CAAATGACCCAACCAACAAGC 58.517 47.619 0.00 0.00 0.00 4.01
12 13 2.697751 TCCAAATGACCCAACCAACAAG 59.302 45.455 0.00 0.00 0.00 3.16
13 14 2.752030 TCCAAATGACCCAACCAACAA 58.248 42.857 0.00 0.00 0.00 2.83
14 15 2.432510 GTTCCAAATGACCCAACCAACA 59.567 45.455 0.00 0.00 0.00 3.33
15 16 2.544903 CGTTCCAAATGACCCAACCAAC 60.545 50.000 0.00 0.00 0.00 3.77
16 17 1.683917 CGTTCCAAATGACCCAACCAA 59.316 47.619 0.00 0.00 0.00 3.67
17 18 1.133761 TCGTTCCAAATGACCCAACCA 60.134 47.619 0.00 0.00 0.00 3.67
18 19 1.539827 CTCGTTCCAAATGACCCAACC 59.460 52.381 0.00 0.00 0.00 3.77
19 20 2.484264 CTCTCGTTCCAAATGACCCAAC 59.516 50.000 0.00 0.00 0.00 3.77
20 21 2.370519 TCTCTCGTTCCAAATGACCCAA 59.629 45.455 0.00 0.00 0.00 4.12
21 22 1.974957 TCTCTCGTTCCAAATGACCCA 59.025 47.619 0.00 0.00 0.00 4.51
22 23 2.762535 TCTCTCGTTCCAAATGACCC 57.237 50.000 0.00 0.00 0.00 4.46
23 24 3.813166 TGTTTCTCTCGTTCCAAATGACC 59.187 43.478 0.00 0.00 0.00 4.02
24 25 4.511826 AGTGTTTCTCTCGTTCCAAATGAC 59.488 41.667 0.00 0.00 0.00 3.06
25 26 4.703897 AGTGTTTCTCTCGTTCCAAATGA 58.296 39.130 0.00 0.00 0.00 2.57
26 27 5.926542 TCTAGTGTTTCTCTCGTTCCAAATG 59.073 40.000 0.00 0.00 0.00 2.32
27 28 6.097915 TCTAGTGTTTCTCTCGTTCCAAAT 57.902 37.500 0.00 0.00 0.00 2.32
28 29 5.068723 ACTCTAGTGTTTCTCTCGTTCCAAA 59.931 40.000 0.00 0.00 0.00 3.28
29 30 4.583489 ACTCTAGTGTTTCTCTCGTTCCAA 59.417 41.667 0.00 0.00 0.00 3.53
30 31 4.142790 ACTCTAGTGTTTCTCTCGTTCCA 58.857 43.478 0.00 0.00 0.00 3.53
31 32 4.769859 ACTCTAGTGTTTCTCTCGTTCC 57.230 45.455 0.00 0.00 0.00 3.62
32 33 6.696148 TGAAAACTCTAGTGTTTCTCTCGTTC 59.304 38.462 20.05 13.49 38.98 3.95
33 34 6.570692 TGAAAACTCTAGTGTTTCTCTCGTT 58.429 36.000 20.05 5.95 38.98 3.85
34 35 6.145338 TGAAAACTCTAGTGTTTCTCTCGT 57.855 37.500 20.05 6.57 38.98 4.18
35 36 5.631512 CCTGAAAACTCTAGTGTTTCTCTCG 59.368 44.000 20.05 14.08 38.98 4.04
36 37 6.750148 TCCTGAAAACTCTAGTGTTTCTCTC 58.250 40.000 20.05 15.17 38.98 3.20
37 38 6.732896 TCCTGAAAACTCTAGTGTTTCTCT 57.267 37.500 20.05 7.83 38.98 3.10
38 39 7.210873 TCTTCCTGAAAACTCTAGTGTTTCTC 58.789 38.462 20.05 18.13 38.98 2.87
39 40 7.125792 TCTTCCTGAAAACTCTAGTGTTTCT 57.874 36.000 20.05 12.05 38.98 2.52
40 41 7.787725 TTCTTCCTGAAAACTCTAGTGTTTC 57.212 36.000 20.05 14.52 38.98 2.78
41 42 8.753497 ATTTCTTCCTGAAAACTCTAGTGTTT 57.247 30.769 15.43 15.43 46.32 2.83
42 43 7.993183 TGATTTCTTCCTGAAAACTCTAGTGTT 59.007 33.333 4.35 4.35 46.32 3.32
43 44 7.509546 TGATTTCTTCCTGAAAACTCTAGTGT 58.490 34.615 0.00 0.00 46.32 3.55
44 45 7.969536 TGATTTCTTCCTGAAAACTCTAGTG 57.030 36.000 0.00 0.00 46.32 2.74
45 46 7.171678 CGTTGATTTCTTCCTGAAAACTCTAGT 59.828 37.037 0.00 0.00 46.32 2.57
46 47 7.513968 CGTTGATTTCTTCCTGAAAACTCTAG 58.486 38.462 0.00 0.00 46.32 2.43
47 48 6.073222 GCGTTGATTTCTTCCTGAAAACTCTA 60.073 38.462 0.00 0.00 46.32 2.43
48 49 5.278022 GCGTTGATTTCTTCCTGAAAACTCT 60.278 40.000 0.00 0.00 46.32 3.24
49 50 4.912187 GCGTTGATTTCTTCCTGAAAACTC 59.088 41.667 0.00 0.00 46.32 3.01
50 51 4.261614 GGCGTTGATTTCTTCCTGAAAACT 60.262 41.667 0.00 0.00 46.32 2.66
51 52 3.981416 GGCGTTGATTTCTTCCTGAAAAC 59.019 43.478 0.00 0.00 46.32 2.43
52 53 3.304391 CGGCGTTGATTTCTTCCTGAAAA 60.304 43.478 0.00 0.00 46.32 2.29
54 55 1.804151 CGGCGTTGATTTCTTCCTGAA 59.196 47.619 0.00 0.00 0.00 3.02
55 56 1.438651 CGGCGTTGATTTCTTCCTGA 58.561 50.000 0.00 0.00 0.00 3.86
56 57 0.179189 GCGGCGTTGATTTCTTCCTG 60.179 55.000 9.37 0.00 0.00 3.86
57 58 1.305930 GGCGGCGTTGATTTCTTCCT 61.306 55.000 9.37 0.00 0.00 3.36
58 59 1.136774 GGCGGCGTTGATTTCTTCC 59.863 57.895 9.37 0.00 0.00 3.46
59 60 1.136774 GGGCGGCGTTGATTTCTTC 59.863 57.895 9.37 0.00 0.00 2.87
60 61 0.893727 AAGGGCGGCGTTGATTTCTT 60.894 50.000 16.61 1.44 0.00 2.52
61 62 1.303317 AAGGGCGGCGTTGATTTCT 60.303 52.632 16.61 0.00 0.00 2.52
62 63 1.136774 GAAGGGCGGCGTTGATTTC 59.863 57.895 22.21 2.95 0.00 2.17
63 64 0.035820 TAGAAGGGCGGCGTTGATTT 60.036 50.000 22.21 7.03 0.00 2.17
64 65 0.743345 GTAGAAGGGCGGCGTTGATT 60.743 55.000 22.21 9.39 0.00 2.57
65 66 1.153429 GTAGAAGGGCGGCGTTGAT 60.153 57.895 22.21 12.17 0.00 2.57
66 67 1.895020 ATGTAGAAGGGCGGCGTTGA 61.895 55.000 22.21 6.58 0.00 3.18
67 68 1.024579 AATGTAGAAGGGCGGCGTTG 61.025 55.000 22.21 0.00 0.00 4.10
68 69 0.743345 GAATGTAGAAGGGCGGCGTT 60.743 55.000 17.33 17.33 0.00 4.84
69 70 1.153429 GAATGTAGAAGGGCGGCGT 60.153 57.895 9.37 0.00 0.00 5.68
70 71 0.387929 TAGAATGTAGAAGGGCGGCG 59.612 55.000 0.51 0.51 0.00 6.46
71 72 2.614829 TTAGAATGTAGAAGGGCGGC 57.385 50.000 0.00 0.00 0.00 6.53
72 73 4.514401 AGTTTTAGAATGTAGAAGGGCGG 58.486 43.478 0.00 0.00 0.00 6.13
73 74 7.041984 GGATAAGTTTTAGAATGTAGAAGGGCG 60.042 40.741 0.00 0.00 0.00 6.13
74 75 7.773690 TGGATAAGTTTTAGAATGTAGAAGGGC 59.226 37.037 0.00 0.00 0.00 5.19
75 76 9.681062 TTGGATAAGTTTTAGAATGTAGAAGGG 57.319 33.333 0.00 0.00 0.00 3.95
83 84 9.727627 GCTTCATCTTGGATAAGTTTTAGAATG 57.272 33.333 0.00 0.00 35.38 2.67
84 85 8.616076 CGCTTCATCTTGGATAAGTTTTAGAAT 58.384 33.333 0.00 0.00 35.38 2.40
85 86 7.822334 TCGCTTCATCTTGGATAAGTTTTAGAA 59.178 33.333 0.00 0.00 35.38 2.10
86 87 7.327975 TCGCTTCATCTTGGATAAGTTTTAGA 58.672 34.615 0.00 0.00 35.38 2.10
87 88 7.539712 TCGCTTCATCTTGGATAAGTTTTAG 57.460 36.000 0.00 0.00 35.38 1.85
88 89 7.414098 GCTTCGCTTCATCTTGGATAAGTTTTA 60.414 37.037 0.00 0.00 35.38 1.52
89 90 6.623767 GCTTCGCTTCATCTTGGATAAGTTTT 60.624 38.462 0.00 0.00 35.38 2.43
90 91 5.163713 GCTTCGCTTCATCTTGGATAAGTTT 60.164 40.000 0.00 0.00 35.38 2.66
91 92 4.333926 GCTTCGCTTCATCTTGGATAAGTT 59.666 41.667 0.00 0.00 35.38 2.66
92 93 3.873952 GCTTCGCTTCATCTTGGATAAGT 59.126 43.478 0.00 0.00 35.38 2.24
93 94 4.125703 AGCTTCGCTTCATCTTGGATAAG 58.874 43.478 0.00 0.00 33.89 1.73
94 95 4.142609 AGCTTCGCTTCATCTTGGATAA 57.857 40.909 0.00 0.00 33.89 1.75
95 96 3.827008 AGCTTCGCTTCATCTTGGATA 57.173 42.857 0.00 0.00 33.89 2.59
96 97 2.706339 AGCTTCGCTTCATCTTGGAT 57.294 45.000 0.00 0.00 33.89 3.41
97 98 2.479566 AAGCTTCGCTTCATCTTGGA 57.520 45.000 0.00 0.00 46.77 3.53
107 108 1.961277 CGTGACCCAAAGCTTCGCT 60.961 57.895 0.00 0.00 42.56 4.93
108 109 2.556287 CGTGACCCAAAGCTTCGC 59.444 61.111 0.00 0.00 0.00 4.70
109 110 2.966309 GCCGTGACCCAAAGCTTCG 61.966 63.158 0.00 0.00 0.00 3.79
110 111 2.954611 GCCGTGACCCAAAGCTTC 59.045 61.111 0.00 0.00 0.00 3.86
111 112 2.978010 CGCCGTGACCCAAAGCTT 60.978 61.111 0.00 0.00 0.00 3.74
114 115 4.323477 TCCCGCCGTGACCCAAAG 62.323 66.667 0.00 0.00 0.00 2.77
115 116 4.323477 CTCCCGCCGTGACCCAAA 62.323 66.667 0.00 0.00 0.00 3.28
119 120 4.208686 CTAGCTCCCGCCGTGACC 62.209 72.222 0.00 0.00 36.60 4.02
120 121 3.138798 TCTAGCTCCCGCCGTGAC 61.139 66.667 0.00 0.00 36.60 3.67
121 122 3.138798 GTCTAGCTCCCGCCGTGA 61.139 66.667 0.00 0.00 36.60 4.35
122 123 2.685387 GATGTCTAGCTCCCGCCGTG 62.685 65.000 0.00 0.00 36.60 4.94
123 124 2.442272 ATGTCTAGCTCCCGCCGT 60.442 61.111 0.00 0.00 36.60 5.68
124 125 2.196925 AGATGTCTAGCTCCCGCCG 61.197 63.158 0.00 0.00 36.60 6.46
125 126 1.109920 TCAGATGTCTAGCTCCCGCC 61.110 60.000 0.00 0.00 36.60 6.13
126 127 0.313672 CTCAGATGTCTAGCTCCCGC 59.686 60.000 0.00 0.00 0.00 6.13
127 128 1.686355 ACTCAGATGTCTAGCTCCCG 58.314 55.000 0.00 0.00 0.00 5.14
128 129 4.402829 TGATACTCAGATGTCTAGCTCCC 58.597 47.826 0.00 0.00 0.00 4.30
129 130 5.709631 TGATGATACTCAGATGTCTAGCTCC 59.290 44.000 0.00 0.00 0.00 4.70
130 131 6.816134 TGATGATACTCAGATGTCTAGCTC 57.184 41.667 0.00 0.00 0.00 4.09
131 132 6.350361 GCATGATGATACTCAGATGTCTAGCT 60.350 42.308 0.00 0.00 0.00 3.32
132 133 5.806502 GCATGATGATACTCAGATGTCTAGC 59.193 44.000 0.00 0.00 0.00 3.42
133 134 6.331845 GGCATGATGATACTCAGATGTCTAG 58.668 44.000 0.00 0.00 28.01 2.43
134 135 5.105997 CGGCATGATGATACTCAGATGTCTA 60.106 44.000 0.00 0.00 28.21 2.59
135 136 4.321824 CGGCATGATGATACTCAGATGTCT 60.322 45.833 0.00 0.00 28.21 3.41
136 137 3.925299 CGGCATGATGATACTCAGATGTC 59.075 47.826 0.00 0.00 0.00 3.06
137 138 3.863780 GCGGCATGATGATACTCAGATGT 60.864 47.826 0.00 0.00 0.00 3.06
138 139 2.671888 GCGGCATGATGATACTCAGATG 59.328 50.000 0.00 0.00 0.00 2.90
139 140 2.673326 CGCGGCATGATGATACTCAGAT 60.673 50.000 0.00 0.00 0.00 2.90
140 141 1.336240 CGCGGCATGATGATACTCAGA 60.336 52.381 0.00 0.00 0.00 3.27
141 142 1.066136 CGCGGCATGATGATACTCAG 58.934 55.000 0.00 0.00 0.00 3.35
142 143 0.673437 TCGCGGCATGATGATACTCA 59.327 50.000 6.13 0.00 0.00 3.41
143 144 1.068264 TCTCGCGGCATGATGATACTC 60.068 52.381 6.13 0.00 0.00 2.59
144 145 0.961753 TCTCGCGGCATGATGATACT 59.038 50.000 6.13 0.00 0.00 2.12
145 146 1.336332 ACTCTCGCGGCATGATGATAC 60.336 52.381 6.13 0.00 0.00 2.24
146 147 0.961753 ACTCTCGCGGCATGATGATA 59.038 50.000 6.13 0.00 0.00 2.15
147 148 0.961753 TACTCTCGCGGCATGATGAT 59.038 50.000 6.13 0.00 0.00 2.45
148 149 0.312102 CTACTCTCGCGGCATGATGA 59.688 55.000 6.13 0.00 0.00 2.92
149 150 1.280886 GCTACTCTCGCGGCATGATG 61.281 60.000 6.13 0.00 0.00 3.07
150 151 1.006805 GCTACTCTCGCGGCATGAT 60.007 57.895 6.13 0.00 0.00 2.45
151 152 0.818040 TAGCTACTCTCGCGGCATGA 60.818 55.000 6.13 0.00 0.00 3.07
152 153 0.661780 GTAGCTACTCTCGCGGCATG 60.662 60.000 16.88 0.00 0.00 4.06
153 154 0.820074 AGTAGCTACTCTCGCGGCAT 60.820 55.000 20.95 0.00 0.00 4.40
154 155 1.451567 AGTAGCTACTCTCGCGGCA 60.452 57.895 20.95 0.00 0.00 5.69
155 156 1.009449 CAGTAGCTACTCTCGCGGC 60.009 63.158 23.68 0.00 33.46 6.53
156 157 1.009449 GCAGTAGCTACTCTCGCGG 60.009 63.158 23.68 12.34 37.91 6.46
157 158 4.599417 GCAGTAGCTACTCTCGCG 57.401 61.111 23.68 13.06 37.91 5.87
167 168 3.968724 CGACAACAAAAGAAAGCAGTAGC 59.031 43.478 0.00 0.00 42.56 3.58
168 169 4.272504 TCCGACAACAAAAGAAAGCAGTAG 59.727 41.667 0.00 0.00 0.00 2.57
169 170 4.034742 GTCCGACAACAAAAGAAAGCAGTA 59.965 41.667 0.00 0.00 0.00 2.74
170 171 3.013921 TCCGACAACAAAAGAAAGCAGT 58.986 40.909 0.00 0.00 0.00 4.40
171 172 3.363178 GTCCGACAACAAAAGAAAGCAG 58.637 45.455 0.00 0.00 0.00 4.24
172 173 2.223157 CGTCCGACAACAAAAGAAAGCA 60.223 45.455 0.00 0.00 0.00 3.91
173 174 2.372350 CGTCCGACAACAAAAGAAAGC 58.628 47.619 0.00 0.00 0.00 3.51
174 175 2.286772 CCCGTCCGACAACAAAAGAAAG 60.287 50.000 0.00 0.00 0.00 2.62
175 176 1.671845 CCCGTCCGACAACAAAAGAAA 59.328 47.619 0.00 0.00 0.00 2.52
176 177 1.301423 CCCGTCCGACAACAAAAGAA 58.699 50.000 0.00 0.00 0.00 2.52
177 178 1.161563 GCCCGTCCGACAACAAAAGA 61.162 55.000 0.00 0.00 0.00 2.52
178 179 1.164041 AGCCCGTCCGACAACAAAAG 61.164 55.000 0.00 0.00 0.00 2.27
179 180 0.106335 TAGCCCGTCCGACAACAAAA 59.894 50.000 0.00 0.00 0.00 2.44
180 181 0.322322 ATAGCCCGTCCGACAACAAA 59.678 50.000 0.00 0.00 0.00 2.83
181 182 0.390603 CATAGCCCGTCCGACAACAA 60.391 55.000 0.00 0.00 0.00 2.83
182 183 1.216977 CATAGCCCGTCCGACAACA 59.783 57.895 0.00 0.00 0.00 3.33
183 184 0.104304 ATCATAGCCCGTCCGACAAC 59.896 55.000 0.00 0.00 0.00 3.32
184 185 0.104120 CATCATAGCCCGTCCGACAA 59.896 55.000 0.00 0.00 0.00 3.18
185 186 1.040893 ACATCATAGCCCGTCCGACA 61.041 55.000 0.00 0.00 0.00 4.35
186 187 0.597637 CACATCATAGCCCGTCCGAC 60.598 60.000 0.00 0.00 0.00 4.79
187 188 0.753848 TCACATCATAGCCCGTCCGA 60.754 55.000 0.00 0.00 0.00 4.55
188 189 0.104120 TTCACATCATAGCCCGTCCG 59.896 55.000 0.00 0.00 0.00 4.79
189 190 1.871080 CTTCACATCATAGCCCGTCC 58.129 55.000 0.00 0.00 0.00 4.79
190 191 1.221414 GCTTCACATCATAGCCCGTC 58.779 55.000 0.00 0.00 0.00 4.79
191 192 0.179045 GGCTTCACATCATAGCCCGT 60.179 55.000 0.00 0.00 46.94 5.28
192 193 2.621763 GGCTTCACATCATAGCCCG 58.378 57.895 0.00 0.00 46.94 6.13
195 196 6.564709 TGATTAATGGCTTCACATCATAGC 57.435 37.500 0.00 0.00 0.00 2.97
196 197 8.107399 ACATGATTAATGGCTTCACATCATAG 57.893 34.615 0.00 0.00 40.94 2.23
197 198 9.002600 GTACATGATTAATGGCTTCACATCATA 57.997 33.333 0.00 0.00 40.94 2.15
198 199 6.971726 ACATGATTAATGGCTTCACATCAT 57.028 33.333 0.00 0.00 40.94 2.45
199 200 7.056006 AGTACATGATTAATGGCTTCACATCA 58.944 34.615 0.00 0.00 40.94 3.07
200 201 7.443575 AGAGTACATGATTAATGGCTTCACATC 59.556 37.037 0.00 0.00 40.94 3.06
201 202 7.285566 AGAGTACATGATTAATGGCTTCACAT 58.714 34.615 0.00 0.00 40.94 3.21
202 203 6.653020 AGAGTACATGATTAATGGCTTCACA 58.347 36.000 0.00 0.00 40.94 3.58
203 204 8.662781 TTAGAGTACATGATTAATGGCTTCAC 57.337 34.615 0.00 0.00 40.94 3.18
204 205 9.679661 TTTTAGAGTACATGATTAATGGCTTCA 57.320 29.630 0.00 0.00 40.94 3.02
205 206 9.937175 GTTTTAGAGTACATGATTAATGGCTTC 57.063 33.333 0.00 0.00 40.94 3.86
206 207 9.686683 AGTTTTAGAGTACATGATTAATGGCTT 57.313 29.630 0.00 0.00 40.94 4.35
207 208 9.331282 GAGTTTTAGAGTACATGATTAATGGCT 57.669 33.333 0.00 0.00 40.94 4.75
208 209 9.331282 AGAGTTTTAGAGTACATGATTAATGGC 57.669 33.333 0.00 0.00 40.94 4.40
214 215 9.041354 AGGAGAAGAGTTTTAGAGTACATGATT 57.959 33.333 0.00 0.00 0.00 2.57
215 216 8.602472 AGGAGAAGAGTTTTAGAGTACATGAT 57.398 34.615 0.00 0.00 0.00 2.45
216 217 8.423906 AAGGAGAAGAGTTTTAGAGTACATGA 57.576 34.615 0.00 0.00 0.00 3.07
230 231 9.844257 CCTCATTCATTAATAAAGGAGAAGAGT 57.156 33.333 13.45 0.00 35.81 3.24
231 232 8.782144 GCCTCATTCATTAATAAAGGAGAAGAG 58.218 37.037 13.45 8.20 35.81 2.85
232 233 8.274322 TGCCTCATTCATTAATAAAGGAGAAGA 58.726 33.333 13.45 0.00 35.81 2.87
233 234 8.455903 TGCCTCATTCATTAATAAAGGAGAAG 57.544 34.615 13.45 0.87 35.81 2.85
234 235 8.821686 TTGCCTCATTCATTAATAAAGGAGAA 57.178 30.769 13.45 0.00 35.81 2.87
235 236 8.821686 TTTGCCTCATTCATTAATAAAGGAGA 57.178 30.769 13.45 0.00 35.81 3.71
236 237 9.688592 GATTTGCCTCATTCATTAATAAAGGAG 57.311 33.333 6.10 6.10 32.54 3.69
237 238 9.425248 AGATTTGCCTCATTCATTAATAAAGGA 57.575 29.630 4.98 0.00 32.54 3.36
242 243 9.316730 GCAAAAGATTTGCCTCATTCATTAATA 57.683 29.630 15.12 0.00 39.38 0.98
243 244 8.205131 GCAAAAGATTTGCCTCATTCATTAAT 57.795 30.769 15.12 0.00 39.38 1.40
244 245 7.599630 GCAAAAGATTTGCCTCATTCATTAA 57.400 32.000 15.12 0.00 39.38 1.40
256 257 4.370917 TGAAACAGAGGCAAAAGATTTGC 58.629 39.130 17.18 17.18 44.22 3.68
257 258 6.907206 TTTGAAACAGAGGCAAAAGATTTG 57.093 33.333 0.00 0.00 0.00 2.32
258 259 7.920160 TTTTTGAAACAGAGGCAAAAGATTT 57.080 28.000 0.00 0.00 41.02 2.17
299 300 1.291877 CGGTTCAAACTCGGCCTCAG 61.292 60.000 0.00 0.00 0.00 3.35
306 307 3.419759 CCGGGCGGTTCAAACTCG 61.420 66.667 0.00 0.00 0.00 4.18
363 364 1.295792 GGTCGCATCGGCTTCATTTA 58.704 50.000 0.00 0.00 38.10 1.40
369 370 2.125106 GAAGGGTCGCATCGGCTT 60.125 61.111 0.00 0.00 38.10 4.35
390 391 1.792367 GCCCATTTTGTTCTTTGCGTC 59.208 47.619 0.00 0.00 0.00 5.19
406 407 6.000840 TGTCTGCGAAATATATTTATGCCCA 58.999 36.000 22.48 16.45 33.07 5.36
446 450 2.194271 GATCCAAGACACCGATCGAAC 58.806 52.381 18.66 4.75 0.00 3.95
449 453 0.595053 CGGATCCAAGACACCGATCG 60.595 60.000 13.41 8.51 46.94 3.69
493 497 3.461773 CGTGATCGTGCCCTCCCT 61.462 66.667 0.00 0.00 0.00 4.20
494 498 3.458163 TCGTGATCGTGCCCTCCC 61.458 66.667 0.00 0.00 38.33 4.30
495 499 2.202756 GTCGTGATCGTGCCCTCC 60.203 66.667 0.00 0.00 38.33 4.30
496 500 2.579787 CGTCGTGATCGTGCCCTC 60.580 66.667 0.00 0.00 38.33 4.30
515 519 0.820891 GATGGATCATGGCTGGCGTT 60.821 55.000 0.00 0.00 0.00 4.84
723 737 4.499633 CCCCGGTGTATGTGGGCC 62.500 72.222 0.00 0.00 41.88 5.80
747 761 1.483415 TCCTAACCTACGCCATGAACC 59.517 52.381 0.00 0.00 0.00 3.62
766 780 0.946221 CGCGGCTCTGGGATTGTATC 60.946 60.000 0.00 0.00 0.00 2.24
942 964 0.185901 TCTCCTGCCAAGCTGGTTTT 59.814 50.000 11.62 0.00 45.76 2.43
948 970 0.908198 CTACCTTCTCCTGCCAAGCT 59.092 55.000 0.00 0.00 0.00 3.74
955 977 4.141135 TCCTGGACTATCTACCTTCTCCTG 60.141 50.000 0.00 0.00 0.00 3.86
961 983 5.459831 CCATACCTCCTGGACTATCTACCTT 60.460 48.000 0.00 0.00 35.70 3.50
962 984 4.044825 CCATACCTCCTGGACTATCTACCT 59.955 50.000 0.00 0.00 35.70 3.08
963 985 4.044317 TCCATACCTCCTGGACTATCTACC 59.956 50.000 0.00 0.00 37.87 3.18
964 986 5.258051 CTCCATACCTCCTGGACTATCTAC 58.742 50.000 0.00 0.00 37.87 2.59
965 987 4.292571 CCTCCATACCTCCTGGACTATCTA 59.707 50.000 0.00 0.00 37.87 1.98
966 988 3.076785 CCTCCATACCTCCTGGACTATCT 59.923 52.174 0.00 0.00 37.87 1.98
967 989 3.181416 ACCTCCATACCTCCTGGACTATC 60.181 52.174 0.00 0.00 37.87 2.08
968 990 2.798368 ACCTCCATACCTCCTGGACTAT 59.202 50.000 0.00 0.00 37.87 2.12
969 991 2.091278 CACCTCCATACCTCCTGGACTA 60.091 54.545 0.00 0.00 37.87 2.59
972 994 0.031111 CCACCTCCATACCTCCTGGA 60.031 60.000 0.00 0.00 40.49 3.86
974 996 1.418334 CTCCACCTCCATACCTCCTG 58.582 60.000 0.00 0.00 0.00 3.86
975 997 0.266152 CCTCCACCTCCATACCTCCT 59.734 60.000 0.00 0.00 0.00 3.69
976 998 0.031010 ACCTCCACCTCCATACCTCC 60.031 60.000 0.00 0.00 0.00 4.30
1173 1202 3.766691 TCCGGCGGCTGGAAGTAC 61.767 66.667 27.79 0.00 35.75 2.73
1254 1283 1.980765 TGGTCTGCAGAGGATCACTTT 59.019 47.619 18.89 0.00 37.82 2.66
1255 1284 1.277557 GTGGTCTGCAGAGGATCACTT 59.722 52.381 18.89 0.00 40.48 3.16
1256 1285 0.901124 GTGGTCTGCAGAGGATCACT 59.099 55.000 18.89 0.00 40.48 3.41
1257 1286 0.610174 TGTGGTCTGCAGAGGATCAC 59.390 55.000 18.89 21.10 43.00 3.06
1258 1287 0.900421 CTGTGGTCTGCAGAGGATCA 59.100 55.000 18.89 12.83 37.82 2.92
1313 1348 1.965930 GATGTGCAGCCAACGTCCA 60.966 57.895 0.00 0.00 0.00 4.02
1317 1352 0.311790 AACAAGATGTGCAGCCAACG 59.688 50.000 0.00 0.00 0.00 4.10
1395 1432 5.186996 TCTTCTTGGTGCTGTCATTTTTC 57.813 39.130 0.00 0.00 0.00 2.29
1403 1440 2.283145 AGCATTCTTCTTGGTGCTGT 57.717 45.000 0.00 0.00 45.44 4.40
1532 1584 3.845178 TGCAAGAACATCTACACGGTAG 58.155 45.455 5.09 5.09 0.00 3.18
1673 1733 5.729732 GCGTCGACAGAGATCAACAACTATA 60.730 44.000 17.16 0.00 0.00 1.31
1674 1734 4.663166 CGTCGACAGAGATCAACAACTAT 58.337 43.478 17.16 0.00 0.00 2.12
1731 1795 1.533129 GGCAACCTTCGACACAAACAC 60.533 52.381 0.00 0.00 0.00 3.32
1832 1896 4.016444 CACCAATGTGTACCCTGCTAAAT 58.984 43.478 0.00 0.00 37.72 1.40
1845 2123 0.887247 TTCGGATTGCCACCAATGTG 59.113 50.000 0.00 0.00 41.60 3.21
1895 2180 1.460359 CACGGCCGTACAATTAACGTT 59.540 47.619 33.70 5.88 38.67 3.99
1897 2182 1.348276 TCACGGCCGTACAATTAACG 58.652 50.000 33.70 15.65 40.01 3.18
1902 2187 3.530265 TTCTAATCACGGCCGTACAAT 57.470 42.857 33.70 21.43 0.00 2.71
1909 2194 6.876257 AGATCTATTCATTTCTAATCACGGCC 59.124 38.462 0.00 0.00 0.00 6.13
1955 2240 3.803186 ATGCCTCTAAGATGATTGGGG 57.197 47.619 0.00 0.00 0.00 4.96
1956 2241 6.719301 AGAATATGCCTCTAAGATGATTGGG 58.281 40.000 0.00 0.00 0.00 4.12
1957 2242 8.102047 AGAAGAATATGCCTCTAAGATGATTGG 58.898 37.037 0.00 0.00 0.00 3.16
1958 2243 9.153721 GAGAAGAATATGCCTCTAAGATGATTG 57.846 37.037 0.00 0.00 0.00 2.67
1959 2244 9.103582 AGAGAAGAATATGCCTCTAAGATGATT 57.896 33.333 0.00 0.00 34.54 2.57
1960 2245 8.669055 AGAGAAGAATATGCCTCTAAGATGAT 57.331 34.615 0.00 0.00 34.54 2.45
1961 2246 7.178274 GGAGAGAAGAATATGCCTCTAAGATGA 59.822 40.741 0.00 0.00 36.25 2.92
1962 2247 7.178983 AGGAGAGAAGAATATGCCTCTAAGATG 59.821 40.741 0.00 0.00 36.25 2.90
1966 2251 6.139671 ACAGGAGAGAAGAATATGCCTCTAA 58.860 40.000 0.00 0.00 36.25 2.10
1967 2252 5.710646 ACAGGAGAGAAGAATATGCCTCTA 58.289 41.667 0.00 0.00 36.25 2.43
1969 2254 4.953940 ACAGGAGAGAAGAATATGCCTC 57.046 45.455 0.00 0.00 0.00 4.70
1996 2401 0.164432 GCCGTGTACGCTGGTTAAAC 59.836 55.000 15.43 0.00 38.18 2.01
1997 2402 0.950071 GGCCGTGTACGCTGGTTAAA 60.950 55.000 15.43 0.00 38.18 1.52
1998 2403 1.374505 GGCCGTGTACGCTGGTTAA 60.375 57.895 15.43 0.00 38.18 2.01
2006 2411 0.742505 TCTCTTATGGGCCGTGTACG 59.257 55.000 8.97 0.00 39.44 3.67
2033 2438 3.429822 CGGGCCGTTCACTTATCTAGAAA 60.430 47.826 19.97 0.00 0.00 2.52
2037 2442 1.679680 CTCGGGCCGTTCACTTATCTA 59.320 52.381 27.32 0.00 0.00 1.98
2038 2443 0.460311 CTCGGGCCGTTCACTTATCT 59.540 55.000 27.32 0.00 0.00 1.98
2039 2444 0.529992 CCTCGGGCCGTTCACTTATC 60.530 60.000 27.32 0.00 0.00 1.75
2040 2445 1.520666 CCTCGGGCCGTTCACTTAT 59.479 57.895 27.32 0.00 0.00 1.73
2041 2446 2.652095 CCCTCGGGCCGTTCACTTA 61.652 63.158 27.32 2.99 0.00 2.24
2042 2447 4.016706 CCCTCGGGCCGTTCACTT 62.017 66.667 27.32 0.00 0.00 3.16
2111 2516 1.541588 GTGGAAAGCTAGGCCTGTTTG 59.458 52.381 17.99 3.91 0.00 2.93
2120 2525 3.310774 CCGTGATCAATGTGGAAAGCTAG 59.689 47.826 0.00 0.00 0.00 3.42
2152 2557 2.607635 CGAGGTTTGTCATTGTATCGGG 59.392 50.000 0.00 0.00 0.00 5.14
2161 2566 1.079127 CGGCTCCGAGGTTTGTCAT 60.079 57.895 1.35 0.00 42.83 3.06
2185 2590 0.968393 GGTGAGGAGGAGAAGCGTCT 60.968 60.000 0.31 0.31 36.55 4.18
2207 2612 2.743718 CGGTGTGCTTCCTGAGGT 59.256 61.111 0.00 0.00 0.00 3.85
2208 2613 2.743928 GCGGTGTGCTTCCTGAGG 60.744 66.667 0.00 0.00 41.73 3.86
2209 2614 2.031012 TGCGGTGTGCTTCCTGAG 59.969 61.111 0.00 0.00 46.63 3.35
2210 2615 2.031012 CTGCGGTGTGCTTCCTGA 59.969 61.111 0.00 0.00 46.63 3.86
2211 2616 3.052082 CCTGCGGTGTGCTTCCTG 61.052 66.667 0.00 0.00 46.63 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.