Multiple sequence alignment - TraesCS5B01G495100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G495100 | chr5B | 100.000 | 2463 | 0 | 0 | 1 | 2463 | 662941324 | 662943786 | 0.000000e+00 | 4549.0 |
1 | TraesCS5B01G495100 | chr5B | 100.000 | 534 | 0 | 0 | 2782 | 3315 | 662944105 | 662944638 | 0.000000e+00 | 987.0 |
2 | TraesCS5B01G495100 | chr5B | 90.262 | 534 | 48 | 4 | 2785 | 3315 | 134047624 | 134047092 | 0.000000e+00 | 695.0 |
3 | TraesCS5B01G495100 | chr5B | 91.489 | 94 | 3 | 5 | 2372 | 2463 | 686255426 | 686255336 | 1.250000e-24 | 124.0 |
4 | TraesCS5B01G495100 | chr5D | 91.715 | 1557 | 64 | 27 | 843 | 2371 | 526872195 | 526873714 | 0.000000e+00 | 2100.0 |
5 | TraesCS5B01G495100 | chr5D | 90.650 | 492 | 41 | 5 | 2829 | 3315 | 509681987 | 509682478 | 0.000000e+00 | 649.0 |
6 | TraesCS5B01G495100 | chr5D | 89.954 | 219 | 10 | 6 | 537 | 753 | 526870746 | 526870954 | 4.210000e-69 | 272.0 |
7 | TraesCS5B01G495100 | chr5D | 92.473 | 93 | 4 | 3 | 2372 | 2463 | 197126062 | 197125972 | 2.680000e-26 | 130.0 |
8 | TraesCS5B01G495100 | chr5D | 90.217 | 92 | 8 | 1 | 2372 | 2463 | 189973223 | 189973313 | 5.810000e-23 | 119.0 |
9 | TraesCS5B01G495100 | chr5D | 96.491 | 57 | 1 | 1 | 756 | 811 | 526871038 | 526871094 | 3.520000e-15 | 93.5 |
10 | TraesCS5B01G495100 | chr5A | 95.209 | 814 | 36 | 1 | 1538 | 2348 | 654074344 | 654075157 | 0.000000e+00 | 1284.0 |
11 | TraesCS5B01G495100 | chr5A | 92.254 | 710 | 28 | 11 | 756 | 1456 | 654073559 | 654074250 | 0.000000e+00 | 981.0 |
12 | TraesCS5B01G495100 | chr5A | 85.992 | 771 | 86 | 11 | 1540 | 2302 | 700850369 | 700849613 | 0.000000e+00 | 806.0 |
13 | TraesCS5B01G495100 | chr5A | 85.045 | 448 | 47 | 14 | 1021 | 1455 | 700851587 | 700851147 | 3.930000e-119 | 438.0 |
14 | TraesCS5B01G495100 | chr5A | 87.209 | 172 | 9 | 7 | 588 | 753 | 654073308 | 654073472 | 2.030000e-42 | 183.0 |
15 | TraesCS5B01G495100 | chr5A | 76.235 | 324 | 46 | 19 | 1 | 298 | 444063636 | 444063318 | 3.450000e-30 | 143.0 |
16 | TraesCS5B01G495100 | chrUn | 85.733 | 771 | 91 | 8 | 1540 | 2302 | 110767507 | 110766748 | 0.000000e+00 | 797.0 |
17 | TraesCS5B01G495100 | chrUn | 84.309 | 427 | 50 | 11 | 1039 | 1455 | 110768029 | 110767610 | 5.150000e-108 | 401.0 |
18 | TraesCS5B01G495100 | chrUn | 76.226 | 265 | 53 | 8 | 3 | 265 | 134447716 | 134447460 | 7.460000e-27 | 132.0 |
19 | TraesCS5B01G495100 | chr6D | 90.841 | 535 | 46 | 3 | 2782 | 3314 | 445457471 | 445456938 | 0.000000e+00 | 713.0 |
20 | TraesCS5B01G495100 | chr6D | 77.491 | 271 | 52 | 4 | 1189 | 1456 | 379339357 | 379339093 | 1.590000e-33 | 154.0 |
21 | TraesCS5B01G495100 | chr6D | 95.181 | 83 | 3 | 1 | 2371 | 2453 | 445457605 | 445457524 | 2.680000e-26 | 130.0 |
22 | TraesCS5B01G495100 | chr6D | 93.902 | 82 | 4 | 1 | 2372 | 2453 | 445421584 | 445421504 | 4.490000e-24 | 122.0 |
23 | TraesCS5B01G495100 | chr4B | 84.542 | 731 | 98 | 9 | 1578 | 2302 | 660706016 | 660705295 | 0.000000e+00 | 710.0 |
24 | TraesCS5B01G495100 | chr4B | 83.628 | 452 | 46 | 15 | 1021 | 1455 | 660707208 | 660706768 | 1.850000e-107 | 399.0 |
25 | TraesCS5B01G495100 | chr2D | 90.280 | 535 | 48 | 4 | 2784 | 3315 | 404379299 | 404378766 | 0.000000e+00 | 697.0 |
26 | TraesCS5B01G495100 | chr2D | 89.159 | 535 | 53 | 3 | 2786 | 3315 | 599936259 | 599936793 | 0.000000e+00 | 662.0 |
27 | TraesCS5B01G495100 | chr1B | 92.719 | 467 | 33 | 1 | 2850 | 3315 | 593759564 | 593760030 | 0.000000e+00 | 673.0 |
28 | TraesCS5B01G495100 | chr4D | 91.232 | 479 | 40 | 2 | 2838 | 3315 | 277000153 | 277000630 | 0.000000e+00 | 651.0 |
29 | TraesCS5B01G495100 | chr4D | 93.103 | 87 | 6 | 0 | 2371 | 2457 | 65187216 | 65187302 | 9.650000e-26 | 128.0 |
30 | TraesCS5B01G495100 | chr4D | 91.398 | 93 | 5 | 3 | 2372 | 2463 | 212096603 | 212096693 | 1.250000e-24 | 124.0 |
31 | TraesCS5B01G495100 | chr7A | 90.554 | 487 | 43 | 3 | 2832 | 3315 | 722230681 | 722230195 | 2.790000e-180 | 641.0 |
32 | TraesCS5B01G495100 | chr7A | 80.282 | 426 | 73 | 10 | 3 | 420 | 700644856 | 700644434 | 8.930000e-81 | 311.0 |
33 | TraesCS5B01G495100 | chr7A | 80.047 | 426 | 74 | 10 | 3 | 420 | 700628135 | 700627713 | 4.150000e-79 | 305.0 |
34 | TraesCS5B01G495100 | chr7A | 76.694 | 369 | 57 | 19 | 1 | 361 | 714575098 | 714575445 | 9.450000e-41 | 178.0 |
35 | TraesCS5B01G495100 | chr7B | 87.759 | 531 | 63 | 2 | 2787 | 3315 | 682844704 | 682845234 | 1.310000e-173 | 619.0 |
36 | TraesCS5B01G495100 | chr7B | 78.055 | 401 | 49 | 22 | 53 | 435 | 130581454 | 130581075 | 2.000000e-52 | 217.0 |
37 | TraesCS5B01G495100 | chr7B | 76.163 | 344 | 66 | 14 | 3 | 340 | 674601315 | 674601648 | 2.050000e-37 | 167.0 |
38 | TraesCS5B01G495100 | chr2B | 79.176 | 461 | 59 | 28 | 3 | 436 | 449660958 | 449660508 | 5.410000e-73 | 285.0 |
39 | TraesCS5B01G495100 | chr2B | 82.692 | 156 | 17 | 7 | 188 | 336 | 690722801 | 690722649 | 2.680000e-26 | 130.0 |
40 | TraesCS5B01G495100 | chr6B | 79.832 | 238 | 39 | 4 | 1189 | 1423 | 567611426 | 567611657 | 7.360000e-37 | 165.0 |
41 | TraesCS5B01G495100 | chr6A | 78.992 | 238 | 41 | 4 | 1189 | 1423 | 521648669 | 521648900 | 1.590000e-33 | 154.0 |
42 | TraesCS5B01G495100 | chr3D | 79.532 | 171 | 23 | 9 | 209 | 369 | 66144690 | 66144858 | 9.720000e-21 | 111.0 |
43 | TraesCS5B01G495100 | chr2A | 92.754 | 69 | 4 | 1 | 2388 | 2456 | 22666587 | 22666654 | 7.570000e-17 | 99.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G495100 | chr5B | 662941324 | 662944638 | 3314 | False | 2768.000000 | 4549 | 100.000000 | 1 | 3315 | 2 | chr5B.!!$F1 | 3314 |
1 | TraesCS5B01G495100 | chr5B | 134047092 | 134047624 | 532 | True | 695.000000 | 695 | 90.262000 | 2785 | 3315 | 1 | chr5B.!!$R1 | 530 |
2 | TraesCS5B01G495100 | chr5D | 526870746 | 526873714 | 2968 | False | 821.833333 | 2100 | 92.720000 | 537 | 2371 | 3 | chr5D.!!$F3 | 1834 |
3 | TraesCS5B01G495100 | chr5A | 654073308 | 654075157 | 1849 | False | 816.000000 | 1284 | 91.557333 | 588 | 2348 | 3 | chr5A.!!$F1 | 1760 |
4 | TraesCS5B01G495100 | chr5A | 700849613 | 700851587 | 1974 | True | 622.000000 | 806 | 85.518500 | 1021 | 2302 | 2 | chr5A.!!$R2 | 1281 |
5 | TraesCS5B01G495100 | chrUn | 110766748 | 110768029 | 1281 | True | 599.000000 | 797 | 85.021000 | 1039 | 2302 | 2 | chrUn.!!$R2 | 1263 |
6 | TraesCS5B01G495100 | chr6D | 445456938 | 445457605 | 667 | True | 421.500000 | 713 | 93.011000 | 2371 | 3314 | 2 | chr6D.!!$R3 | 943 |
7 | TraesCS5B01G495100 | chr4B | 660705295 | 660707208 | 1913 | True | 554.500000 | 710 | 84.085000 | 1021 | 2302 | 2 | chr4B.!!$R1 | 1281 |
8 | TraesCS5B01G495100 | chr2D | 404378766 | 404379299 | 533 | True | 697.000000 | 697 | 90.280000 | 2784 | 3315 | 1 | chr2D.!!$R1 | 531 |
9 | TraesCS5B01G495100 | chr2D | 599936259 | 599936793 | 534 | False | 662.000000 | 662 | 89.159000 | 2786 | 3315 | 1 | chr2D.!!$F1 | 529 |
10 | TraesCS5B01G495100 | chr7B | 682844704 | 682845234 | 530 | False | 619.000000 | 619 | 87.759000 | 2787 | 3315 | 1 | chr7B.!!$F2 | 528 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
448 | 449 | 0.036010 | ATTCAGCCAAGTGGTCCTCG | 60.036 | 55.0 | 0.00 | 0.00 | 37.57 | 4.63 | F |
623 | 625 | 0.036010 | AACCTGTTGGATCCTCGCAG | 60.036 | 55.0 | 14.23 | 16.55 | 37.04 | 5.18 | F |
907 | 2076 | 0.397535 | ATTGCCTCGCCATTCCCATT | 60.398 | 50.0 | 0.00 | 0.00 | 0.00 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1507 | 3048 | 0.247736 | GAATGAGAGCACACGGTCCT | 59.752 | 55.000 | 0.00 | 0.0 | 40.69 | 3.85 | R |
1521 | 3062 | 2.473610 | GCACGTGCACCTTCAGAATGA | 61.474 | 52.381 | 34.52 | 0.0 | 42.34 | 2.57 | R |
2826 | 4795 | 1.175983 | TTGCGGGGGTGTTGAACATC | 61.176 | 55.000 | 0.00 | 0.0 | 0.00 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 9.859427 | TGCTTGATTAAAAAGTTTATCTCCATG | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 3.66 |
119 | 120 | 6.998968 | AAAAATTCAAATGCTTGGTCAACA | 57.001 | 29.167 | 0.00 | 0.00 | 33.01 | 3.33 |
120 | 121 | 7.571080 | AAAAATTCAAATGCTTGGTCAACAT | 57.429 | 28.000 | 0.00 | 0.00 | 33.01 | 2.71 |
121 | 122 | 7.571080 | AAAATTCAAATGCTTGGTCAACATT | 57.429 | 28.000 | 0.00 | 0.00 | 35.59 | 2.71 |
122 | 123 | 7.571080 | AAATTCAAATGCTTGGTCAACATTT | 57.429 | 28.000 | 13.30 | 13.30 | 43.01 | 2.32 |
123 | 124 | 6.790285 | ATTCAAATGCTTGGTCAACATTTC | 57.210 | 33.333 | 14.86 | 0.00 | 40.94 | 2.17 |
124 | 125 | 5.534207 | TCAAATGCTTGGTCAACATTTCT | 57.466 | 34.783 | 14.86 | 2.22 | 40.94 | 2.52 |
125 | 126 | 5.531634 | TCAAATGCTTGGTCAACATTTCTC | 58.468 | 37.500 | 14.86 | 0.00 | 40.94 | 2.87 |
126 | 127 | 5.068855 | TCAAATGCTTGGTCAACATTTCTCA | 59.931 | 36.000 | 14.86 | 6.21 | 40.94 | 3.27 |
127 | 128 | 5.534207 | AATGCTTGGTCAACATTTCTCAA | 57.466 | 34.783 | 0.00 | 0.00 | 29.94 | 3.02 |
128 | 129 | 4.998671 | TGCTTGGTCAACATTTCTCAAA | 57.001 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
129 | 130 | 5.534207 | TGCTTGGTCAACATTTCTCAAAT | 57.466 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
130 | 131 | 6.647334 | TGCTTGGTCAACATTTCTCAAATA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
131 | 132 | 7.230849 | TGCTTGGTCAACATTTCTCAAATAT | 57.769 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
132 | 133 | 7.669427 | TGCTTGGTCAACATTTCTCAAATATT | 58.331 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
133 | 134 | 8.149647 | TGCTTGGTCAACATTTCTCAAATATTT | 58.850 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
134 | 135 | 8.437742 | GCTTGGTCAACATTTCTCAAATATTTG | 58.562 | 33.333 | 20.13 | 20.13 | 39.48 | 2.32 |
135 | 136 | 9.480053 | CTTGGTCAACATTTCTCAAATATTTGT | 57.520 | 29.630 | 23.95 | 5.40 | 39.18 | 2.83 |
136 | 137 | 9.829507 | TTGGTCAACATTTCTCAAATATTTGTT | 57.170 | 25.926 | 23.95 | 10.14 | 39.18 | 2.83 |
137 | 138 | 9.474920 | TGGTCAACATTTCTCAAATATTTGTTC | 57.525 | 29.630 | 23.95 | 3.48 | 39.18 | 3.18 |
138 | 139 | 9.474920 | GGTCAACATTTCTCAAATATTTGTTCA | 57.525 | 29.630 | 23.95 | 7.78 | 39.18 | 3.18 |
218 | 219 | 9.906660 | ACATTTTTCATGTACGTGATAAACATT | 57.093 | 25.926 | 26.05 | 14.20 | 33.82 | 2.71 |
251 | 252 | 7.556733 | ACACATTTCACATTTTTCAAATGCT | 57.443 | 28.000 | 8.77 | 0.00 | 39.04 | 3.79 |
252 | 253 | 7.987649 | ACACATTTCACATTTTTCAAATGCTT | 58.012 | 26.923 | 8.77 | 0.00 | 39.04 | 3.91 |
253 | 254 | 7.911205 | ACACATTTCACATTTTTCAAATGCTTG | 59.089 | 29.630 | 8.77 | 2.35 | 39.04 | 4.01 |
254 | 255 | 7.377397 | CACATTTCACATTTTTCAAATGCTTGG | 59.623 | 33.333 | 8.77 | 0.00 | 39.04 | 3.61 |
255 | 256 | 6.998968 | TTTCACATTTTTCAAATGCTTGGT | 57.001 | 29.167 | 8.77 | 0.00 | 33.01 | 3.67 |
256 | 257 | 8.557864 | CATTTCACATTTTTCAAATGCTTGGTA | 58.442 | 29.630 | 8.77 | 0.00 | 31.38 | 3.25 |
257 | 258 | 8.498054 | TTTCACATTTTTCAAATGCTTGGTAA | 57.502 | 26.923 | 8.77 | 0.00 | 33.01 | 2.85 |
258 | 259 | 7.712264 | TCACATTTTTCAAATGCTTGGTAAG | 57.288 | 32.000 | 8.77 | 0.00 | 33.01 | 2.34 |
274 | 275 | 7.481275 | CTTGGTAAGCATTTTCACATGTTTT | 57.519 | 32.000 | 0.00 | 0.00 | 30.93 | 2.43 |
275 | 276 | 7.856145 | TTGGTAAGCATTTTCACATGTTTTT | 57.144 | 28.000 | 0.00 | 0.00 | 30.93 | 1.94 |
276 | 277 | 8.948631 | TTGGTAAGCATTTTCACATGTTTTTA | 57.051 | 26.923 | 0.00 | 0.00 | 30.93 | 1.52 |
277 | 278 | 9.553064 | TTGGTAAGCATTTTCACATGTTTTTAT | 57.447 | 25.926 | 0.00 | 0.00 | 30.93 | 1.40 |
283 | 284 | 9.630098 | AGCATTTTCACATGTTTTTATAGAGTG | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
284 | 285 | 9.410556 | GCATTTTCACATGTTTTTATAGAGTGT | 57.589 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
395 | 396 | 3.946242 | AAAAAGGAGGTTGTGGCCT | 57.054 | 47.368 | 3.32 | 0.00 | 42.53 | 5.19 |
401 | 402 | 3.168528 | AGGTTGTGGCCTCCGTGT | 61.169 | 61.111 | 3.32 | 0.00 | 32.39 | 4.49 |
402 | 403 | 2.203294 | GGTTGTGGCCTCCGTGTT | 60.203 | 61.111 | 3.32 | 0.00 | 0.00 | 3.32 |
403 | 404 | 2.258726 | GGTTGTGGCCTCCGTGTTC | 61.259 | 63.158 | 3.32 | 0.00 | 0.00 | 3.18 |
404 | 405 | 2.112297 | TTGTGGCCTCCGTGTTCC | 59.888 | 61.111 | 3.32 | 0.00 | 0.00 | 3.62 |
405 | 406 | 2.448582 | TTGTGGCCTCCGTGTTCCT | 61.449 | 57.895 | 3.32 | 0.00 | 0.00 | 3.36 |
406 | 407 | 2.358737 | GTGGCCTCCGTGTTCCTG | 60.359 | 66.667 | 3.32 | 0.00 | 0.00 | 3.86 |
407 | 408 | 3.636231 | TGGCCTCCGTGTTCCTGG | 61.636 | 66.667 | 3.32 | 0.00 | 0.00 | 4.45 |
408 | 409 | 4.410400 | GGCCTCCGTGTTCCTGGG | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 4.45 |
410 | 411 | 4.410400 | CCTCCGTGTTCCTGGGCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
411 | 412 | 4.760047 | CTCCGTGTTCCTGGGCCG | 62.760 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
425 | 426 | 4.115199 | GCCGGCCCATCTTGGTCT | 62.115 | 66.667 | 18.11 | 0.00 | 35.17 | 3.85 |
426 | 427 | 2.677228 | CCGGCCCATCTTGGTCTT | 59.323 | 61.111 | 0.00 | 0.00 | 35.17 | 3.01 |
427 | 428 | 1.452108 | CCGGCCCATCTTGGTCTTC | 60.452 | 63.158 | 0.00 | 0.00 | 35.17 | 2.87 |
428 | 429 | 1.452108 | CGGCCCATCTTGGTCTTCC | 60.452 | 63.158 | 0.00 | 0.00 | 35.17 | 3.46 |
429 | 430 | 1.691219 | GGCCCATCTTGGTCTTCCA | 59.309 | 57.895 | 0.00 | 0.00 | 42.66 | 3.53 |
430 | 431 | 0.259938 | GGCCCATCTTGGTCTTCCAT | 59.740 | 55.000 | 0.00 | 0.00 | 43.91 | 3.41 |
431 | 432 | 1.342374 | GGCCCATCTTGGTCTTCCATT | 60.342 | 52.381 | 0.00 | 0.00 | 43.91 | 3.16 |
432 | 433 | 2.027385 | GCCCATCTTGGTCTTCCATTC | 58.973 | 52.381 | 0.00 | 0.00 | 43.91 | 2.67 |
433 | 434 | 2.621407 | GCCCATCTTGGTCTTCCATTCA | 60.621 | 50.000 | 0.00 | 0.00 | 43.91 | 2.57 |
434 | 435 | 3.285484 | CCCATCTTGGTCTTCCATTCAG | 58.715 | 50.000 | 0.00 | 0.00 | 43.91 | 3.02 |
435 | 436 | 2.686915 | CCATCTTGGTCTTCCATTCAGC | 59.313 | 50.000 | 0.00 | 0.00 | 43.91 | 4.26 |
436 | 437 | 2.496899 | TCTTGGTCTTCCATTCAGCC | 57.503 | 50.000 | 0.00 | 0.00 | 43.91 | 4.85 |
437 | 438 | 1.704628 | TCTTGGTCTTCCATTCAGCCA | 59.295 | 47.619 | 0.00 | 0.00 | 43.91 | 4.75 |
438 | 439 | 2.108075 | TCTTGGTCTTCCATTCAGCCAA | 59.892 | 45.455 | 0.00 | 0.00 | 43.91 | 4.52 |
439 | 440 | 2.205022 | TGGTCTTCCATTCAGCCAAG | 57.795 | 50.000 | 0.00 | 0.00 | 39.03 | 3.61 |
440 | 441 | 1.425066 | TGGTCTTCCATTCAGCCAAGT | 59.575 | 47.619 | 0.00 | 0.00 | 39.03 | 3.16 |
441 | 442 | 1.815003 | GGTCTTCCATTCAGCCAAGTG | 59.185 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
442 | 443 | 1.815003 | GTCTTCCATTCAGCCAAGTGG | 59.185 | 52.381 | 0.00 | 0.00 | 38.53 | 4.00 |
443 | 444 | 1.425066 | TCTTCCATTCAGCCAAGTGGT | 59.575 | 47.619 | 0.00 | 0.00 | 37.57 | 4.16 |
444 | 445 | 1.815003 | CTTCCATTCAGCCAAGTGGTC | 59.185 | 52.381 | 0.00 | 0.00 | 37.57 | 4.02 |
445 | 446 | 0.038166 | TCCATTCAGCCAAGTGGTCC | 59.962 | 55.000 | 0.00 | 0.00 | 37.57 | 4.46 |
446 | 447 | 0.038744 | CCATTCAGCCAAGTGGTCCT | 59.961 | 55.000 | 0.00 | 0.00 | 37.57 | 3.85 |
447 | 448 | 1.457346 | CATTCAGCCAAGTGGTCCTC | 58.543 | 55.000 | 0.00 | 0.00 | 37.57 | 3.71 |
448 | 449 | 0.036010 | ATTCAGCCAAGTGGTCCTCG | 60.036 | 55.000 | 0.00 | 0.00 | 37.57 | 4.63 |
449 | 450 | 2.046892 | CAGCCAAGTGGTCCTCGG | 60.047 | 66.667 | 0.00 | 0.00 | 37.57 | 4.63 |
450 | 451 | 4.021925 | AGCCAAGTGGTCCTCGGC | 62.022 | 66.667 | 0.00 | 2.53 | 43.31 | 5.54 |
451 | 452 | 4.021925 | GCCAAGTGGTCCTCGGCT | 62.022 | 66.667 | 0.00 | 0.00 | 39.73 | 5.52 |
452 | 453 | 2.266055 | CCAAGTGGTCCTCGGCTC | 59.734 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
453 | 454 | 2.583441 | CCAAGTGGTCCTCGGCTCA | 61.583 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
454 | 455 | 1.371183 | CAAGTGGTCCTCGGCTCAA | 59.629 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
455 | 456 | 0.951040 | CAAGTGGTCCTCGGCTCAAC | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
456 | 457 | 2.432628 | GTGGTCCTCGGCTCAACG | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
457 | 458 | 2.599281 | TGGTCCTCGGCTCAACGA | 60.599 | 61.111 | 0.00 | 0.00 | 41.13 | 3.85 |
463 | 464 | 3.759544 | TCGGCTCAACGAGTGTCT | 58.240 | 55.556 | 0.00 | 0.00 | 38.06 | 3.41 |
464 | 465 | 1.285950 | TCGGCTCAACGAGTGTCTG | 59.714 | 57.895 | 0.00 | 0.00 | 38.06 | 3.51 |
465 | 466 | 1.170290 | TCGGCTCAACGAGTGTCTGA | 61.170 | 55.000 | 0.00 | 0.00 | 38.06 | 3.27 |
466 | 467 | 0.109086 | CGGCTCAACGAGTGTCTGAT | 60.109 | 55.000 | 0.00 | 0.00 | 35.47 | 2.90 |
467 | 468 | 1.634702 | GGCTCAACGAGTGTCTGATC | 58.365 | 55.000 | 0.00 | 0.00 | 31.39 | 2.92 |
468 | 469 | 1.067565 | GGCTCAACGAGTGTCTGATCA | 60.068 | 52.381 | 0.00 | 0.00 | 31.39 | 2.92 |
469 | 470 | 2.610479 | GGCTCAACGAGTGTCTGATCAA | 60.610 | 50.000 | 0.00 | 0.00 | 31.39 | 2.57 |
470 | 471 | 3.257393 | GCTCAACGAGTGTCTGATCAAT | 58.743 | 45.455 | 0.00 | 0.00 | 31.39 | 2.57 |
471 | 472 | 3.061831 | GCTCAACGAGTGTCTGATCAATG | 59.938 | 47.826 | 0.00 | 0.00 | 31.39 | 2.82 |
472 | 473 | 3.588955 | TCAACGAGTGTCTGATCAATGG | 58.411 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
473 | 474 | 2.015736 | ACGAGTGTCTGATCAATGGC | 57.984 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
474 | 475 | 1.276138 | ACGAGTGTCTGATCAATGGCA | 59.724 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
475 | 476 | 1.931841 | CGAGTGTCTGATCAATGGCAG | 59.068 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
476 | 477 | 2.286872 | GAGTGTCTGATCAATGGCAGG | 58.713 | 52.381 | 0.00 | 0.00 | 33.05 | 4.85 |
477 | 478 | 1.632409 | AGTGTCTGATCAATGGCAGGT | 59.368 | 47.619 | 0.00 | 0.00 | 33.05 | 4.00 |
478 | 479 | 1.741706 | GTGTCTGATCAATGGCAGGTG | 59.258 | 52.381 | 0.00 | 0.00 | 33.05 | 4.00 |
479 | 480 | 0.737219 | GTCTGATCAATGGCAGGTGC | 59.263 | 55.000 | 0.00 | 0.00 | 41.14 | 5.01 |
480 | 481 | 0.745486 | TCTGATCAATGGCAGGTGCG | 60.745 | 55.000 | 0.00 | 0.00 | 43.26 | 5.34 |
481 | 482 | 1.721664 | CTGATCAATGGCAGGTGCGG | 61.722 | 60.000 | 0.00 | 0.00 | 43.26 | 5.69 |
482 | 483 | 3.129913 | GATCAATGGCAGGTGCGGC | 62.130 | 63.158 | 0.00 | 0.00 | 43.26 | 6.53 |
496 | 497 | 3.680786 | CGGCGTGTGGGAGAGACA | 61.681 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
497 | 498 | 2.982130 | GGCGTGTGGGAGAGACAT | 59.018 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
498 | 499 | 1.663379 | CGGCGTGTGGGAGAGACATA | 61.663 | 60.000 | 0.00 | 0.00 | 0.00 | 2.29 |
499 | 500 | 0.103208 | GGCGTGTGGGAGAGACATAG | 59.897 | 60.000 | 0.00 | 0.00 | 0.00 | 2.23 |
500 | 501 | 1.103803 | GCGTGTGGGAGAGACATAGA | 58.896 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
501 | 502 | 1.683917 | GCGTGTGGGAGAGACATAGAT | 59.316 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
502 | 503 | 2.544694 | GCGTGTGGGAGAGACATAGATG | 60.545 | 54.545 | 0.00 | 0.00 | 0.00 | 2.90 |
503 | 504 | 2.952310 | CGTGTGGGAGAGACATAGATGA | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
504 | 505 | 3.243234 | CGTGTGGGAGAGACATAGATGAC | 60.243 | 52.174 | 0.00 | 0.00 | 0.00 | 3.06 |
505 | 506 | 3.068873 | GTGTGGGAGAGACATAGATGACC | 59.931 | 52.174 | 0.00 | 0.00 | 0.00 | 4.02 |
506 | 507 | 3.052566 | TGTGGGAGAGACATAGATGACCT | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
507 | 508 | 3.572255 | GTGGGAGAGACATAGATGACCTC | 59.428 | 52.174 | 0.00 | 3.13 | 34.12 | 3.85 |
508 | 509 | 3.205282 | TGGGAGAGACATAGATGACCTCA | 59.795 | 47.826 | 14.36 | 0.00 | 35.31 | 3.86 |
509 | 510 | 4.219115 | GGGAGAGACATAGATGACCTCAA | 58.781 | 47.826 | 14.36 | 0.00 | 35.31 | 3.02 |
510 | 511 | 4.651503 | GGGAGAGACATAGATGACCTCAAA | 59.348 | 45.833 | 14.36 | 0.00 | 35.31 | 2.69 |
511 | 512 | 5.129485 | GGGAGAGACATAGATGACCTCAAAA | 59.871 | 44.000 | 14.36 | 0.00 | 35.31 | 2.44 |
512 | 513 | 6.183361 | GGGAGAGACATAGATGACCTCAAAAT | 60.183 | 42.308 | 14.36 | 0.79 | 35.31 | 1.82 |
513 | 514 | 7.278875 | GGAGAGACATAGATGACCTCAAAATT | 58.721 | 38.462 | 14.36 | 0.00 | 35.31 | 1.82 |
514 | 515 | 7.772757 | GGAGAGACATAGATGACCTCAAAATTT | 59.227 | 37.037 | 14.36 | 0.00 | 35.31 | 1.82 |
515 | 516 | 8.729805 | AGAGACATAGATGACCTCAAAATTTC | 57.270 | 34.615 | 14.36 | 0.00 | 35.31 | 2.17 |
516 | 517 | 7.772757 | AGAGACATAGATGACCTCAAAATTTCC | 59.227 | 37.037 | 14.36 | 0.00 | 35.31 | 3.13 |
517 | 518 | 7.405292 | AGACATAGATGACCTCAAAATTTCCA | 58.595 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
518 | 519 | 8.057623 | AGACATAGATGACCTCAAAATTTCCAT | 58.942 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
519 | 520 | 9.342308 | GACATAGATGACCTCAAAATTTCCATA | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
520 | 521 | 9.872684 | ACATAGATGACCTCAAAATTTCCATAT | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
527 | 528 | 8.757877 | TGACCTCAAAATTTCCATATTTTAGGG | 58.242 | 33.333 | 1.04 | 0.00 | 35.98 | 3.53 |
528 | 529 | 8.909423 | ACCTCAAAATTTCCATATTTTAGGGA | 57.091 | 30.769 | 13.83 | 0.00 | 35.98 | 4.20 |
529 | 530 | 9.332713 | ACCTCAAAATTTCCATATTTTAGGGAA | 57.667 | 29.630 | 13.83 | 0.00 | 45.87 | 3.97 |
541 | 542 | 1.874129 | TTAGGGAAAGATGGCCTCGA | 58.126 | 50.000 | 3.32 | 0.00 | 0.00 | 4.04 |
542 | 543 | 1.874129 | TAGGGAAAGATGGCCTCGAA | 58.126 | 50.000 | 3.32 | 0.00 | 0.00 | 3.71 |
568 | 569 | 9.480053 | AATGTTTATCAATTTGTGAAGAACCAG | 57.520 | 29.630 | 0.00 | 0.00 | 40.50 | 4.00 |
620 | 622 | 1.550524 | TCAGAACCTGTTGGATCCTCG | 59.449 | 52.381 | 14.23 | 0.00 | 35.96 | 4.63 |
621 | 623 | 0.250513 | AGAACCTGTTGGATCCTCGC | 59.749 | 55.000 | 14.23 | 3.62 | 35.96 | 5.03 |
622 | 624 | 0.036388 | GAACCTGTTGGATCCTCGCA | 60.036 | 55.000 | 14.23 | 8.17 | 37.04 | 5.10 |
623 | 625 | 0.036010 | AACCTGTTGGATCCTCGCAG | 60.036 | 55.000 | 14.23 | 16.55 | 37.04 | 5.18 |
624 | 626 | 1.194781 | ACCTGTTGGATCCTCGCAGT | 61.195 | 55.000 | 14.23 | 2.36 | 37.04 | 4.40 |
625 | 627 | 0.460987 | CCTGTTGGATCCTCGCAGTC | 60.461 | 60.000 | 14.23 | 0.00 | 34.57 | 3.51 |
626 | 628 | 0.803768 | CTGTTGGATCCTCGCAGTCG | 60.804 | 60.000 | 14.23 | 0.00 | 0.00 | 4.18 |
663 | 665 | 4.442052 | CCTGAGATCGGTATCTTCTGCAAA | 60.442 | 45.833 | 0.00 | 0.00 | 42.73 | 3.68 |
734 | 741 | 4.648626 | GCTGTGGGCTGGCTGTGA | 62.649 | 66.667 | 0.00 | 0.00 | 38.06 | 3.58 |
740 | 747 | 2.356278 | GGCTGGCTGTGATGGGAA | 59.644 | 61.111 | 0.00 | 0.00 | 0.00 | 3.97 |
811 | 903 | 7.335422 | TGGCATAGAGAAGAGAAGAAAACAATC | 59.665 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
836 | 928 | 4.996122 | GTGAGCCAATCATCCTCTATCAAG | 59.004 | 45.833 | 0.00 | 0.00 | 40.92 | 3.02 |
837 | 929 | 4.041321 | TGAGCCAATCATCCTCTATCAAGG | 59.959 | 45.833 | 0.00 | 0.00 | 33.31 | 3.61 |
903 | 2072 | 0.749454 | AGTGATTGCCTCGCCATTCC | 60.749 | 55.000 | 0.00 | 0.00 | 34.78 | 3.01 |
907 | 2076 | 0.397535 | ATTGCCTCGCCATTCCCATT | 60.398 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
908 | 2077 | 1.037030 | TTGCCTCGCCATTCCCATTC | 61.037 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
968 | 2137 | 4.053295 | GCACAATCAAACTCAAATGCACT | 58.947 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
969 | 2138 | 4.149396 | GCACAATCAAACTCAAATGCACTC | 59.851 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
970 | 2139 | 5.526115 | CACAATCAAACTCAAATGCACTCT | 58.474 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
971 | 2140 | 5.628193 | CACAATCAAACTCAAATGCACTCTC | 59.372 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
972 | 2141 | 5.159209 | CAATCAAACTCAAATGCACTCTCC | 58.841 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
991 | 2160 | 2.983192 | TCCACTGAATAACTCCCCACAA | 59.017 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
1004 | 2173 | 2.304761 | TCCCCACAAGTAGAACCATGAC | 59.695 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1005 | 2174 | 2.618045 | CCCCACAAGTAGAACCATGACC | 60.618 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
1006 | 2175 | 2.039746 | CCCACAAGTAGAACCATGACCA | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1007 | 2176 | 3.308402 | CCCACAAGTAGAACCATGACCAT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
1008 | 2177 | 3.691118 | CCACAAGTAGAACCATGACCATG | 59.309 | 47.826 | 0.00 | 3.11 | 38.51 | 3.66 |
1009 | 2178 | 4.565444 | CCACAAGTAGAACCATGACCATGA | 60.565 | 45.833 | 11.28 | 0.00 | 41.20 | 3.07 |
1010 | 2179 | 4.633126 | CACAAGTAGAACCATGACCATGAG | 59.367 | 45.833 | 11.28 | 4.65 | 41.20 | 2.90 |
1011 | 2180 | 4.194640 | CAAGTAGAACCATGACCATGAGG | 58.805 | 47.826 | 11.28 | 0.00 | 41.20 | 3.86 |
1045 | 2238 | 2.268920 | GCAGATGCTTCGTCCCCA | 59.731 | 61.111 | 0.00 | 0.00 | 38.21 | 4.96 |
1095 | 2288 | 3.435186 | GCGGCTTCCAACCTGCTC | 61.435 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1096 | 2289 | 2.747855 | CGGCTTCCAACCTGCTCC | 60.748 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
1097 | 2290 | 2.436109 | GGCTTCCAACCTGCTCCA | 59.564 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
1137 | 2333 | 1.132640 | GCGCGCGTTTTCTTCTCAT | 59.867 | 52.632 | 32.35 | 0.00 | 0.00 | 2.90 |
1501 | 3042 | 7.969690 | ATACTATAATGATCAGGAGGTGAGG | 57.030 | 40.000 | 0.09 | 0.00 | 39.07 | 3.86 |
1503 | 3044 | 6.015918 | ACTATAATGATCAGGAGGTGAGGAG | 58.984 | 44.000 | 0.09 | 0.00 | 39.07 | 3.69 |
1505 | 3046 | 1.010795 | TGATCAGGAGGTGAGGAGGA | 58.989 | 55.000 | 0.00 | 0.00 | 39.07 | 3.71 |
1507 | 3048 | 0.712979 | ATCAGGAGGTGAGGAGGACA | 59.287 | 55.000 | 0.00 | 0.00 | 39.07 | 4.02 |
1512 | 3053 | 0.973496 | GAGGTGAGGAGGACAGGACC | 60.973 | 65.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1514 | 3055 | 1.606889 | GTGAGGAGGACAGGACCGT | 60.607 | 63.158 | 0.00 | 0.00 | 34.73 | 4.83 |
1515 | 3056 | 1.606601 | TGAGGAGGACAGGACCGTG | 60.607 | 63.158 | 0.00 | 0.00 | 34.73 | 4.94 |
1516 | 3057 | 1.606889 | GAGGAGGACAGGACCGTGT | 60.607 | 63.158 | 0.00 | 0.00 | 34.73 | 4.49 |
1517 | 3058 | 1.878656 | GAGGAGGACAGGACCGTGTG | 61.879 | 65.000 | 0.00 | 0.00 | 34.73 | 3.82 |
1518 | 3059 | 2.048127 | GAGGACAGGACCGTGTGC | 60.048 | 66.667 | 6.29 | 6.29 | 38.97 | 4.57 |
1521 | 3062 | 2.574955 | GGACAGGACCGTGTGCTCT | 61.575 | 63.158 | 7.02 | 0.00 | 35.97 | 4.09 |
1524 | 3065 | 1.188219 | ACAGGACCGTGTGCTCTCAT | 61.188 | 55.000 | 0.00 | 0.00 | 30.21 | 2.90 |
1525 | 3066 | 0.036952 | CAGGACCGTGTGCTCTCATT | 60.037 | 55.000 | 0.00 | 0.00 | 30.21 | 2.57 |
1527 | 3068 | 0.247736 | GGACCGTGTGCTCTCATTCT | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1528 | 3069 | 1.354040 | GACCGTGTGCTCTCATTCTG | 58.646 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1529 | 3070 | 0.969149 | ACCGTGTGCTCTCATTCTGA | 59.031 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1531 | 3072 | 1.998315 | CCGTGTGCTCTCATTCTGAAG | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1532 | 3073 | 1.998315 | CGTGTGCTCTCATTCTGAAGG | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
1535 | 3492 | 1.736681 | GTGCTCTCATTCTGAAGGTGC | 59.263 | 52.381 | 1.70 | 6.30 | 0.00 | 5.01 |
1536 | 3493 | 1.348696 | TGCTCTCATTCTGAAGGTGCA | 59.651 | 47.619 | 12.73 | 12.73 | 0.00 | 4.57 |
2402 | 4371 | 2.356535 | GGAGAGAGGGATTGTGTGCATT | 60.357 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2407 | 4376 | 4.858850 | AGAGGGATTGTGTGCATTGATAA | 58.141 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
2416 | 4385 | 8.867112 | ATTGTGTGCATTGATAATTCTCATTC | 57.133 | 30.769 | 0.00 | 0.00 | 0.00 | 2.67 |
2427 | 4396 | 4.611310 | AATTCTCATTCATCGTGCACTG | 57.389 | 40.909 | 16.19 | 7.56 | 0.00 | 3.66 |
2453 | 4422 | 5.488341 | CACATATATAGGTACAAGGGGTGC | 58.512 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
2455 | 4424 | 0.754472 | TATAGGTACAAGGGGTGCGC | 59.246 | 55.000 | 0.00 | 0.00 | 32.16 | 6.09 |
2456 | 4425 | 1.979619 | ATAGGTACAAGGGGTGCGCC | 61.980 | 60.000 | 8.12 | 8.12 | 32.16 | 6.53 |
2802 | 4771 | 0.231279 | CGACAGGTGCAACGTACAAC | 59.769 | 55.000 | 0.00 | 0.00 | 38.12 | 3.32 |
2816 | 4785 | 5.051891 | ACGTACAACACACAGACCTATAC | 57.948 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
2826 | 4795 | 6.037940 | ACACACAGACCTATACACGTATGTAG | 59.962 | 42.308 | 0.00 | 0.00 | 44.51 | 2.74 |
2845 | 4816 | 1.152652 | ATGTTCAACACCCCCGCAA | 60.153 | 52.632 | 0.00 | 0.00 | 0.00 | 4.85 |
2964 | 4935 | 1.654105 | GGTACATGCAAGACTCGAACG | 59.346 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
2967 | 4938 | 2.730672 | ATGCAAGACTCGAACGCGC | 61.731 | 57.895 | 5.73 | 0.00 | 37.46 | 6.86 |
3037 | 5008 | 0.875908 | CGTCCGGCGATGATGAACAT | 60.876 | 55.000 | 9.30 | 0.00 | 44.77 | 2.71 |
3055 | 5026 | 1.134280 | CATGGTTGGCAGAGAGGTAGG | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
3057 | 5028 | 1.553690 | GGTTGGCAGAGAGGTAGGCA | 61.554 | 60.000 | 0.00 | 0.00 | 35.94 | 4.75 |
3059 | 5030 | 0.545309 | TTGGCAGAGAGGTAGGCAGT | 60.545 | 55.000 | 0.00 | 0.00 | 39.08 | 4.40 |
3095 | 5066 | 0.392461 | TAGACAATCGTGGCCTTGGC | 60.392 | 55.000 | 3.32 | 1.35 | 30.22 | 4.52 |
3129 | 5100 | 1.178276 | ACTCCTGAAGTAGCTGTCGG | 58.822 | 55.000 | 0.00 | 0.00 | 36.07 | 4.79 |
3180 | 5155 | 3.138798 | GCCTGTACTCGGCCTCGA | 61.139 | 66.667 | 13.72 | 0.00 | 41.73 | 4.04 |
3199 | 5175 | 1.007336 | ACACTCGATCGTGAAACCGC | 61.007 | 55.000 | 22.80 | 0.00 | 38.27 | 5.68 |
3206 | 5182 | 4.676586 | CGTGAAACCGCGGGTTGC | 62.677 | 66.667 | 37.08 | 24.05 | 46.20 | 4.17 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
14 | 15 | 9.859427 | CATGGAGATAAACTTTTTAATCAAGCA | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
96 | 97 | 6.998968 | TGTTGACCAAGCATTTGAATTTTT | 57.001 | 29.167 | 0.00 | 0.00 | 36.36 | 1.94 |
97 | 98 | 7.571080 | AATGTTGACCAAGCATTTGAATTTT | 57.429 | 28.000 | 0.00 | 0.00 | 36.36 | 1.82 |
98 | 99 | 7.499895 | AGAAATGTTGACCAAGCATTTGAATTT | 59.500 | 29.630 | 18.56 | 0.00 | 41.24 | 1.82 |
99 | 100 | 6.993902 | AGAAATGTTGACCAAGCATTTGAATT | 59.006 | 30.769 | 18.56 | 0.00 | 41.24 | 2.17 |
100 | 101 | 6.527423 | AGAAATGTTGACCAAGCATTTGAAT | 58.473 | 32.000 | 18.56 | 8.95 | 41.24 | 2.57 |
101 | 102 | 5.916318 | AGAAATGTTGACCAAGCATTTGAA | 58.084 | 33.333 | 18.56 | 0.00 | 41.24 | 2.69 |
102 | 103 | 5.068855 | TGAGAAATGTTGACCAAGCATTTGA | 59.931 | 36.000 | 18.56 | 7.81 | 41.24 | 2.69 |
103 | 104 | 5.291178 | TGAGAAATGTTGACCAAGCATTTG | 58.709 | 37.500 | 18.56 | 0.00 | 41.24 | 2.32 |
104 | 105 | 5.534207 | TGAGAAATGTTGACCAAGCATTT | 57.466 | 34.783 | 15.91 | 15.91 | 43.06 | 2.32 |
105 | 106 | 5.534207 | TTGAGAAATGTTGACCAAGCATT | 57.466 | 34.783 | 0.00 | 0.00 | 34.69 | 3.56 |
106 | 107 | 5.534207 | TTTGAGAAATGTTGACCAAGCAT | 57.466 | 34.783 | 0.00 | 0.00 | 0.00 | 3.79 |
107 | 108 | 4.998671 | TTTGAGAAATGTTGACCAAGCA | 57.001 | 36.364 | 0.00 | 0.00 | 0.00 | 3.91 |
108 | 109 | 8.437742 | CAAATATTTGAGAAATGTTGACCAAGC | 58.562 | 33.333 | 21.35 | 0.00 | 40.55 | 4.01 |
109 | 110 | 9.480053 | ACAAATATTTGAGAAATGTTGACCAAG | 57.520 | 29.630 | 30.18 | 2.18 | 40.55 | 3.61 |
110 | 111 | 9.829507 | AACAAATATTTGAGAAATGTTGACCAA | 57.170 | 25.926 | 30.18 | 0.00 | 40.55 | 3.67 |
111 | 112 | 9.474920 | GAACAAATATTTGAGAAATGTTGACCA | 57.525 | 29.630 | 30.18 | 0.00 | 40.55 | 4.02 |
112 | 113 | 9.474920 | TGAACAAATATTTGAGAAATGTTGACC | 57.525 | 29.630 | 30.18 | 6.27 | 40.55 | 4.02 |
192 | 193 | 9.906660 | AATGTTTATCACGTACATGAAAAATGT | 57.093 | 25.926 | 0.00 | 0.00 | 33.10 | 2.71 |
225 | 226 | 9.275398 | AGCATTTGAAAAATGTGAAATGTGTAT | 57.725 | 25.926 | 12.82 | 0.00 | 37.85 | 2.29 |
226 | 227 | 8.659925 | AGCATTTGAAAAATGTGAAATGTGTA | 57.340 | 26.923 | 12.82 | 0.00 | 37.85 | 2.90 |
227 | 228 | 7.556733 | AGCATTTGAAAAATGTGAAATGTGT | 57.443 | 28.000 | 12.82 | 0.00 | 37.85 | 3.72 |
228 | 229 | 7.377397 | CCAAGCATTTGAAAAATGTGAAATGTG | 59.623 | 33.333 | 12.82 | 0.00 | 37.85 | 3.21 |
229 | 230 | 7.067251 | ACCAAGCATTTGAAAAATGTGAAATGT | 59.933 | 29.630 | 12.82 | 3.17 | 37.85 | 2.71 |
230 | 231 | 7.419204 | ACCAAGCATTTGAAAAATGTGAAATG | 58.581 | 30.769 | 12.82 | 0.00 | 38.35 | 2.32 |
231 | 232 | 7.571080 | ACCAAGCATTTGAAAAATGTGAAAT | 57.429 | 28.000 | 12.82 | 0.00 | 36.36 | 2.17 |
232 | 233 | 6.998968 | ACCAAGCATTTGAAAAATGTGAAA | 57.001 | 29.167 | 12.82 | 0.00 | 36.36 | 2.69 |
233 | 234 | 8.140677 | CTTACCAAGCATTTGAAAAATGTGAA | 57.859 | 30.769 | 12.82 | 0.00 | 36.36 | 3.18 |
234 | 235 | 7.712264 | CTTACCAAGCATTTGAAAAATGTGA | 57.288 | 32.000 | 12.82 | 0.00 | 36.36 | 3.58 |
250 | 251 | 7.481275 | AAAACATGTGAAAATGCTTACCAAG | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 3.61 |
251 | 252 | 7.856145 | AAAAACATGTGAAAATGCTTACCAA | 57.144 | 28.000 | 0.00 | 0.00 | 0.00 | 3.67 |
257 | 258 | 9.630098 | CACTCTATAAAAACATGTGAAAATGCT | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
258 | 259 | 9.410556 | ACACTCTATAAAAACATGTGAAAATGC | 57.589 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
377 | 378 | 3.946242 | AGGCCACAACCTCCTTTTT | 57.054 | 47.368 | 5.01 | 0.00 | 33.62 | 1.94 |
384 | 385 | 2.676163 | GAACACGGAGGCCACAACCT | 62.676 | 60.000 | 5.01 | 0.00 | 45.04 | 3.50 |
385 | 386 | 2.203294 | AACACGGAGGCCACAACC | 60.203 | 61.111 | 5.01 | 1.45 | 0.00 | 3.77 |
386 | 387 | 2.258726 | GGAACACGGAGGCCACAAC | 61.259 | 63.158 | 5.01 | 0.00 | 0.00 | 3.32 |
387 | 388 | 2.112297 | GGAACACGGAGGCCACAA | 59.888 | 61.111 | 5.01 | 0.00 | 0.00 | 3.33 |
388 | 389 | 2.847234 | AGGAACACGGAGGCCACA | 60.847 | 61.111 | 5.01 | 0.00 | 0.00 | 4.17 |
389 | 390 | 2.358737 | CAGGAACACGGAGGCCAC | 60.359 | 66.667 | 5.01 | 0.00 | 0.00 | 5.01 |
390 | 391 | 3.636231 | CCAGGAACACGGAGGCCA | 61.636 | 66.667 | 5.01 | 0.00 | 0.00 | 5.36 |
391 | 392 | 4.410400 | CCCAGGAACACGGAGGCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
393 | 394 | 4.410400 | GGCCCAGGAACACGGAGG | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
394 | 395 | 4.760047 | CGGCCCAGGAACACGGAG | 62.760 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
421 | 422 | 1.815003 | CACTTGGCTGAATGGAAGACC | 59.185 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
422 | 423 | 1.815003 | CCACTTGGCTGAATGGAAGAC | 59.185 | 52.381 | 0.00 | 0.00 | 33.80 | 3.01 |
423 | 424 | 1.425066 | ACCACTTGGCTGAATGGAAGA | 59.575 | 47.619 | 0.00 | 0.00 | 39.32 | 2.87 |
424 | 425 | 1.815003 | GACCACTTGGCTGAATGGAAG | 59.185 | 52.381 | 0.00 | 0.00 | 39.32 | 3.46 |
425 | 426 | 1.547675 | GGACCACTTGGCTGAATGGAA | 60.548 | 52.381 | 0.00 | 0.00 | 39.32 | 3.53 |
426 | 427 | 0.038166 | GGACCACTTGGCTGAATGGA | 59.962 | 55.000 | 0.00 | 0.00 | 39.32 | 3.41 |
427 | 428 | 0.038744 | AGGACCACTTGGCTGAATGG | 59.961 | 55.000 | 0.00 | 0.00 | 39.32 | 3.16 |
428 | 429 | 1.457346 | GAGGACCACTTGGCTGAATG | 58.543 | 55.000 | 0.00 | 0.00 | 39.32 | 2.67 |
429 | 430 | 0.036010 | CGAGGACCACTTGGCTGAAT | 60.036 | 55.000 | 0.00 | 0.00 | 39.32 | 2.57 |
430 | 431 | 1.371183 | CGAGGACCACTTGGCTGAA | 59.629 | 57.895 | 0.00 | 0.00 | 39.32 | 3.02 |
431 | 432 | 2.583441 | CCGAGGACCACTTGGCTGA | 61.583 | 63.158 | 0.00 | 0.00 | 43.78 | 4.26 |
432 | 433 | 2.046892 | CCGAGGACCACTTGGCTG | 60.047 | 66.667 | 0.00 | 0.00 | 43.78 | 4.85 |
436 | 437 | 0.951040 | GTTGAGCCGAGGACCACTTG | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
437 | 438 | 1.371558 | GTTGAGCCGAGGACCACTT | 59.628 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
438 | 439 | 2.932234 | CGTTGAGCCGAGGACCACT | 61.932 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
439 | 440 | 2.432628 | CGTTGAGCCGAGGACCAC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
440 | 441 | 2.599281 | TCGTTGAGCCGAGGACCA | 60.599 | 61.111 | 0.00 | 0.00 | 32.18 | 4.02 |
446 | 447 | 1.170290 | TCAGACACTCGTTGAGCCGA | 61.170 | 55.000 | 0.00 | 0.00 | 32.04 | 5.54 |
447 | 448 | 0.109086 | ATCAGACACTCGTTGAGCCG | 60.109 | 55.000 | 0.00 | 0.00 | 32.04 | 5.52 |
448 | 449 | 1.067565 | TGATCAGACACTCGTTGAGCC | 60.068 | 52.381 | 0.00 | 0.00 | 32.04 | 4.70 |
449 | 450 | 2.354109 | TGATCAGACACTCGTTGAGC | 57.646 | 50.000 | 0.00 | 0.00 | 32.04 | 4.26 |
450 | 451 | 3.615937 | CCATTGATCAGACACTCGTTGAG | 59.384 | 47.826 | 0.00 | 0.00 | 35.52 | 3.02 |
451 | 452 | 3.588955 | CCATTGATCAGACACTCGTTGA | 58.411 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
452 | 453 | 2.094894 | GCCATTGATCAGACACTCGTTG | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
453 | 454 | 2.289631 | TGCCATTGATCAGACACTCGTT | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
454 | 455 | 1.276138 | TGCCATTGATCAGACACTCGT | 59.724 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
455 | 456 | 1.931841 | CTGCCATTGATCAGACACTCG | 59.068 | 52.381 | 0.00 | 0.00 | 32.26 | 4.18 |
456 | 457 | 2.286872 | CCTGCCATTGATCAGACACTC | 58.713 | 52.381 | 0.00 | 0.00 | 32.26 | 3.51 |
457 | 458 | 1.632409 | ACCTGCCATTGATCAGACACT | 59.368 | 47.619 | 0.00 | 0.00 | 32.26 | 3.55 |
458 | 459 | 1.741706 | CACCTGCCATTGATCAGACAC | 59.258 | 52.381 | 0.00 | 0.00 | 32.26 | 3.67 |
459 | 460 | 1.951895 | GCACCTGCCATTGATCAGACA | 60.952 | 52.381 | 0.00 | 0.00 | 34.31 | 3.41 |
460 | 461 | 0.737219 | GCACCTGCCATTGATCAGAC | 59.263 | 55.000 | 0.00 | 0.00 | 34.31 | 3.51 |
461 | 462 | 0.745486 | CGCACCTGCCATTGATCAGA | 60.745 | 55.000 | 0.00 | 0.00 | 37.91 | 3.27 |
462 | 463 | 1.721664 | CCGCACCTGCCATTGATCAG | 61.722 | 60.000 | 0.00 | 0.00 | 37.91 | 2.90 |
463 | 464 | 1.750018 | CCGCACCTGCCATTGATCA | 60.750 | 57.895 | 0.00 | 0.00 | 37.91 | 2.92 |
464 | 465 | 3.113745 | CCGCACCTGCCATTGATC | 58.886 | 61.111 | 0.00 | 0.00 | 37.91 | 2.92 |
465 | 466 | 3.142838 | GCCGCACCTGCCATTGAT | 61.143 | 61.111 | 0.00 | 0.00 | 37.91 | 2.57 |
479 | 480 | 1.663379 | TATGTCTCTCCCACACGCCG | 61.663 | 60.000 | 0.00 | 0.00 | 0.00 | 6.46 |
480 | 481 | 0.103208 | CTATGTCTCTCCCACACGCC | 59.897 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
481 | 482 | 1.103803 | TCTATGTCTCTCCCACACGC | 58.896 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
482 | 483 | 2.952310 | TCATCTATGTCTCTCCCACACG | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
483 | 484 | 3.068873 | GGTCATCTATGTCTCTCCCACAC | 59.931 | 52.174 | 0.00 | 0.00 | 0.00 | 3.82 |
484 | 485 | 3.052566 | AGGTCATCTATGTCTCTCCCACA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
485 | 486 | 3.571590 | AGGTCATCTATGTCTCTCCCAC | 58.428 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
486 | 487 | 3.205282 | TGAGGTCATCTATGTCTCTCCCA | 59.795 | 47.826 | 13.11 | 0.00 | 33.68 | 4.37 |
487 | 488 | 3.838565 | TGAGGTCATCTATGTCTCTCCC | 58.161 | 50.000 | 13.11 | 0.00 | 33.68 | 4.30 |
488 | 489 | 5.860941 | TTTGAGGTCATCTATGTCTCTCC | 57.139 | 43.478 | 13.11 | 0.00 | 33.68 | 3.71 |
489 | 490 | 8.729805 | AAATTTTGAGGTCATCTATGTCTCTC | 57.270 | 34.615 | 13.11 | 8.87 | 33.68 | 3.20 |
490 | 491 | 7.772757 | GGAAATTTTGAGGTCATCTATGTCTCT | 59.227 | 37.037 | 0.00 | 2.03 | 33.68 | 3.10 |
491 | 492 | 7.554118 | TGGAAATTTTGAGGTCATCTATGTCTC | 59.446 | 37.037 | 0.00 | 8.21 | 33.39 | 3.36 |
492 | 493 | 7.405292 | TGGAAATTTTGAGGTCATCTATGTCT | 58.595 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
493 | 494 | 7.630242 | TGGAAATTTTGAGGTCATCTATGTC | 57.370 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
494 | 495 | 9.872684 | ATATGGAAATTTTGAGGTCATCTATGT | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
501 | 502 | 8.757877 | CCCTAAAATATGGAAATTTTGAGGTCA | 58.242 | 33.333 | 5.12 | 0.00 | 38.98 | 4.02 |
502 | 503 | 8.977412 | TCCCTAAAATATGGAAATTTTGAGGTC | 58.023 | 33.333 | 5.12 | 0.00 | 38.98 | 3.85 |
503 | 504 | 8.909423 | TCCCTAAAATATGGAAATTTTGAGGT | 57.091 | 30.769 | 5.12 | 0.00 | 38.98 | 3.85 |
510 | 511 | 8.432013 | GCCATCTTTCCCTAAAATATGGAAATT | 58.568 | 33.333 | 15.23 | 0.00 | 46.86 | 1.82 |
511 | 512 | 7.016563 | GGCCATCTTTCCCTAAAATATGGAAAT | 59.983 | 37.037 | 15.23 | 0.00 | 46.86 | 2.17 |
512 | 513 | 6.326323 | GGCCATCTTTCCCTAAAATATGGAAA | 59.674 | 38.462 | 15.23 | 6.48 | 46.86 | 3.13 |
513 | 514 | 5.838521 | GGCCATCTTTCCCTAAAATATGGAA | 59.161 | 40.000 | 15.23 | 0.00 | 46.86 | 3.53 |
514 | 515 | 5.136048 | AGGCCATCTTTCCCTAAAATATGGA | 59.864 | 40.000 | 5.01 | 0.00 | 46.86 | 3.41 |
515 | 516 | 5.397360 | AGGCCATCTTTCCCTAAAATATGG | 58.603 | 41.667 | 5.01 | 9.40 | 46.73 | 2.74 |
516 | 517 | 5.182001 | CGAGGCCATCTTTCCCTAAAATATG | 59.818 | 44.000 | 5.01 | 0.00 | 33.44 | 1.78 |
517 | 518 | 5.073144 | TCGAGGCCATCTTTCCCTAAAATAT | 59.927 | 40.000 | 5.01 | 0.00 | 0.00 | 1.28 |
518 | 519 | 4.410883 | TCGAGGCCATCTTTCCCTAAAATA | 59.589 | 41.667 | 5.01 | 0.00 | 0.00 | 1.40 |
519 | 520 | 3.202151 | TCGAGGCCATCTTTCCCTAAAAT | 59.798 | 43.478 | 5.01 | 0.00 | 0.00 | 1.82 |
520 | 521 | 2.574369 | TCGAGGCCATCTTTCCCTAAAA | 59.426 | 45.455 | 5.01 | 0.00 | 0.00 | 1.52 |
521 | 522 | 2.193127 | TCGAGGCCATCTTTCCCTAAA | 58.807 | 47.619 | 5.01 | 0.00 | 0.00 | 1.85 |
522 | 523 | 1.874129 | TCGAGGCCATCTTTCCCTAA | 58.126 | 50.000 | 5.01 | 0.00 | 0.00 | 2.69 |
523 | 524 | 1.874129 | TTCGAGGCCATCTTTCCCTA | 58.126 | 50.000 | 5.01 | 0.00 | 0.00 | 3.53 |
524 | 525 | 0.991920 | TTTCGAGGCCATCTTTCCCT | 59.008 | 50.000 | 5.01 | 0.00 | 0.00 | 4.20 |
525 | 526 | 1.678101 | CATTTCGAGGCCATCTTTCCC | 59.322 | 52.381 | 5.01 | 0.00 | 0.00 | 3.97 |
526 | 527 | 2.369394 | ACATTTCGAGGCCATCTTTCC | 58.631 | 47.619 | 5.01 | 0.00 | 0.00 | 3.13 |
527 | 528 | 4.440839 | AAACATTTCGAGGCCATCTTTC | 57.559 | 40.909 | 5.01 | 0.00 | 0.00 | 2.62 |
528 | 529 | 5.652014 | TGATAAACATTTCGAGGCCATCTTT | 59.348 | 36.000 | 5.01 | 0.00 | 0.00 | 2.52 |
529 | 530 | 5.192927 | TGATAAACATTTCGAGGCCATCTT | 58.807 | 37.500 | 5.01 | 0.00 | 0.00 | 2.40 |
530 | 531 | 4.780815 | TGATAAACATTTCGAGGCCATCT | 58.219 | 39.130 | 5.01 | 0.00 | 0.00 | 2.90 |
531 | 532 | 5.499139 | TTGATAAACATTTCGAGGCCATC | 57.501 | 39.130 | 5.01 | 0.00 | 0.00 | 3.51 |
532 | 533 | 6.469782 | AATTGATAAACATTTCGAGGCCAT | 57.530 | 33.333 | 5.01 | 0.00 | 0.00 | 4.40 |
533 | 534 | 5.913137 | AATTGATAAACATTTCGAGGCCA | 57.087 | 34.783 | 5.01 | 0.00 | 0.00 | 5.36 |
534 | 535 | 6.034898 | CACAAATTGATAAACATTTCGAGGCC | 59.965 | 38.462 | 0.00 | 0.00 | 0.00 | 5.19 |
535 | 536 | 6.806249 | TCACAAATTGATAAACATTTCGAGGC | 59.194 | 34.615 | 0.00 | 0.00 | 0.00 | 4.70 |
541 | 542 | 9.829507 | TGGTTCTTCACAAATTGATAAACATTT | 57.170 | 25.926 | 0.00 | 0.00 | 33.57 | 2.32 |
542 | 543 | 9.480053 | CTGGTTCTTCACAAATTGATAAACATT | 57.520 | 29.630 | 0.00 | 0.00 | 33.57 | 2.71 |
602 | 603 | 0.250513 | GCGAGGATCCAACAGGTTCT | 59.749 | 55.000 | 15.82 | 0.00 | 0.00 | 3.01 |
620 | 622 | 1.661112 | GATTGAACTACCTGCGACTGC | 59.339 | 52.381 | 0.00 | 0.00 | 43.20 | 4.40 |
621 | 623 | 2.093973 | AGGATTGAACTACCTGCGACTG | 60.094 | 50.000 | 0.00 | 0.00 | 32.39 | 3.51 |
622 | 624 | 2.093973 | CAGGATTGAACTACCTGCGACT | 60.094 | 50.000 | 0.00 | 0.00 | 43.32 | 4.18 |
623 | 625 | 2.271800 | CAGGATTGAACTACCTGCGAC | 58.728 | 52.381 | 0.00 | 0.00 | 43.32 | 5.19 |
624 | 626 | 2.672961 | CAGGATTGAACTACCTGCGA | 57.327 | 50.000 | 0.00 | 0.00 | 43.32 | 5.10 |
663 | 665 | 5.012328 | AGTTCACGACAGAAGAGTCTTTT | 57.988 | 39.130 | 6.88 | 0.00 | 36.38 | 2.27 |
679 | 683 | 3.618690 | ACCATAGCCTCAAGAGTTCAC | 57.381 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
747 | 754 | 1.091537 | GGGCTGCGCACACTAATTAA | 58.908 | 50.000 | 5.66 | 0.00 | 0.00 | 1.40 |
811 | 903 | 4.040095 | TGATAGAGGATGATTGGCTCACTG | 59.960 | 45.833 | 0.00 | 0.00 | 36.48 | 3.66 |
836 | 928 | 3.644884 | ATCTTGATCCATCGTACGTCC | 57.355 | 47.619 | 16.05 | 0.36 | 0.00 | 4.79 |
837 | 929 | 4.083217 | AGCTATCTTGATCCATCGTACGTC | 60.083 | 45.833 | 16.05 | 5.49 | 0.00 | 4.34 |
839 | 931 | 4.162072 | CAGCTATCTTGATCCATCGTACG | 58.838 | 47.826 | 9.53 | 9.53 | 0.00 | 3.67 |
840 | 932 | 3.923461 | GCAGCTATCTTGATCCATCGTAC | 59.077 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
841 | 933 | 3.829026 | AGCAGCTATCTTGATCCATCGTA | 59.171 | 43.478 | 0.00 | 0.00 | 0.00 | 3.43 |
903 | 2072 | 5.415701 | TGATGATGATCATGCATGAGAATGG | 59.584 | 40.000 | 31.36 | 3.52 | 37.20 | 3.16 |
907 | 2076 | 9.494271 | CATATATGATGATGATCATGCATGAGA | 57.506 | 33.333 | 31.36 | 21.59 | 46.83 | 3.27 |
908 | 2077 | 8.725148 | CCATATATGATGATGATCATGCATGAG | 58.275 | 37.037 | 31.36 | 13.58 | 46.83 | 2.90 |
968 | 2137 | 2.838202 | GTGGGGAGTTATTCAGTGGAGA | 59.162 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
969 | 2138 | 2.571653 | TGTGGGGAGTTATTCAGTGGAG | 59.428 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
970 | 2139 | 2.626785 | TGTGGGGAGTTATTCAGTGGA | 58.373 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
971 | 2140 | 3.244911 | ACTTGTGGGGAGTTATTCAGTGG | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
972 | 2141 | 4.021102 | ACTTGTGGGGAGTTATTCAGTG | 57.979 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
991 | 2160 | 2.774234 | CCCTCATGGTCATGGTTCTACT | 59.226 | 50.000 | 10.61 | 0.00 | 39.24 | 2.57 |
1004 | 2173 | 0.465097 | GCTCACATGGACCCTCATGG | 60.465 | 60.000 | 9.25 | 0.12 | 46.33 | 3.66 |
1006 | 2175 | 0.545171 | CTGCTCACATGGACCCTCAT | 59.455 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1007 | 2176 | 1.985614 | CTGCTCACATGGACCCTCA | 59.014 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
1008 | 2177 | 1.451028 | GCTGCTCACATGGACCCTC | 60.451 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
1009 | 2178 | 2.194388 | CTGCTGCTCACATGGACCCT | 62.194 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1010 | 2179 | 1.748122 | CTGCTGCTCACATGGACCC | 60.748 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
1011 | 2180 | 2.404995 | GCTGCTGCTCACATGGACC | 61.405 | 63.158 | 8.53 | 0.00 | 36.03 | 4.46 |
1045 | 2238 | 0.689080 | AGGAGCATGAGGGACACGAT | 60.689 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
1095 | 2288 | 1.528309 | GTGTGGGAAGGTGGTGTGG | 60.528 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
1096 | 2289 | 1.528309 | GGTGTGGGAAGGTGGTGTG | 60.528 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
1097 | 2290 | 2.763645 | GGGTGTGGGAAGGTGGTGT | 61.764 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
1137 | 2333 | 1.335597 | GGTCGTGATCGTGTGTGAAGA | 60.336 | 52.381 | 0.00 | 0.00 | 38.33 | 2.87 |
1491 | 3032 | 1.149782 | TCCTGTCCTCCTCACCTCCT | 61.150 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1493 | 3034 | 0.973496 | GGTCCTGTCCTCCTCACCTC | 60.973 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1494 | 3035 | 1.079438 | GGTCCTGTCCTCCTCACCT | 59.921 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
1495 | 3036 | 2.352032 | CGGTCCTGTCCTCCTCACC | 61.352 | 68.421 | 0.00 | 0.00 | 0.00 | 4.02 |
1496 | 3037 | 1.606889 | ACGGTCCTGTCCTCCTCAC | 60.607 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
1497 | 3038 | 1.606601 | CACGGTCCTGTCCTCCTCA | 60.607 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1498 | 3039 | 1.606889 | ACACGGTCCTGTCCTCCTC | 60.607 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
1499 | 3040 | 1.908793 | CACACGGTCCTGTCCTCCT | 60.909 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
1500 | 3041 | 2.657237 | CACACGGTCCTGTCCTCC | 59.343 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1501 | 3042 | 2.048127 | GCACACGGTCCTGTCCTC | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1503 | 3044 | 2.048127 | GAGCACACGGTCCTGTCC | 60.048 | 66.667 | 0.00 | 0.00 | 33.34 | 4.02 |
1505 | 3046 | 1.188219 | ATGAGAGCACACGGTCCTGT | 61.188 | 55.000 | 0.00 | 0.00 | 40.69 | 4.00 |
1507 | 3048 | 0.247736 | GAATGAGAGCACACGGTCCT | 59.752 | 55.000 | 0.00 | 0.00 | 40.69 | 3.85 |
1521 | 3062 | 2.473610 | GCACGTGCACCTTCAGAATGA | 61.474 | 52.381 | 34.52 | 0.00 | 42.34 | 2.57 |
1524 | 3065 | 3.731136 | GCACGTGCACCTTCAGAA | 58.269 | 55.556 | 34.52 | 0.00 | 41.59 | 3.02 |
2037 | 3994 | 3.986116 | AAGCCCTCGACCCTCCTCC | 62.986 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
2290 | 4256 | 7.839680 | TTATGTAGAGTTGAGCATATGGAGA | 57.160 | 36.000 | 4.56 | 0.00 | 0.00 | 3.71 |
2356 | 4325 | 3.914312 | ACTTACAACAGTCACCAGATCG | 58.086 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2361 | 4330 | 3.054287 | TCCCAAACTTACAACAGTCACCA | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
2402 | 4371 | 6.018507 | CAGTGCACGATGAATGAGAATTATCA | 60.019 | 38.462 | 12.01 | 5.04 | 0.00 | 2.15 |
2407 | 4376 | 2.941064 | CCAGTGCACGATGAATGAGAAT | 59.059 | 45.455 | 12.01 | 0.00 | 0.00 | 2.40 |
2427 | 4396 | 4.080526 | CCCCTTGTACCTATATATGTGCCC | 60.081 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2802 | 4771 | 5.244785 | ACATACGTGTATAGGTCTGTGTG | 57.755 | 43.478 | 0.00 | 0.00 | 36.63 | 3.82 |
2816 | 4785 | 4.328983 | GGGTGTTGAACATCTACATACGTG | 59.671 | 45.833 | 8.65 | 0.00 | 34.89 | 4.49 |
2826 | 4795 | 1.175983 | TTGCGGGGGTGTTGAACATC | 61.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2941 | 4912 | 1.831106 | TCGAGTCTTGCATGTACCCAT | 59.169 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
2964 | 4935 | 4.980903 | CACGTTGCACTTGGGCGC | 62.981 | 66.667 | 0.00 | 0.00 | 36.28 | 6.53 |
3037 | 5008 | 1.553690 | GCCTACCTCTCTGCCAACCA | 61.554 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3055 | 5026 | 0.529773 | TGTGACAACGTCTCCACTGC | 60.530 | 55.000 | 12.98 | 0.00 | 33.15 | 4.40 |
3057 | 5028 | 1.112113 | ACTGTGACAACGTCTCCACT | 58.888 | 50.000 | 12.98 | 0.00 | 33.15 | 4.00 |
3059 | 5030 | 2.292569 | GTCTACTGTGACAACGTCTCCA | 59.707 | 50.000 | 0.00 | 0.00 | 36.97 | 3.86 |
3095 | 5066 | 3.005554 | CAGGAGTTGCTATGTGAGGTTG | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3129 | 5100 | 2.817396 | GCGGAGTGCTCTTGGCTC | 60.817 | 66.667 | 0.00 | 0.00 | 42.39 | 4.70 |
3180 | 5155 | 1.007336 | GCGGTTTCACGATCGAGTGT | 61.007 | 55.000 | 24.34 | 0.00 | 42.40 | 3.55 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.